Multiple sequence alignment - TraesCS2D01G507400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G507400 chr2D 100.000 3915 0 0 1 3915 601058619 601054705 0.000000e+00 7230.0
1 TraesCS2D01G507400 chr2D 85.380 342 46 4 45 384 185374624 185374963 6.220000e-93 351.0
2 TraesCS2D01G507400 chr2D 91.393 244 21 0 705 948 60174990 60175233 6.270000e-88 335.0
3 TraesCS2D01G507400 chr2D 90.909 242 22 0 707 948 60184239 60183998 3.770000e-85 326.0
4 TraesCS2D01G507400 chr4A 95.721 2407 84 6 707 3108 532160342 532162734 0.000000e+00 3856.0
5 TraesCS2D01G507400 chr4A 94.470 217 12 0 3131 3347 532162722 532162938 6.270000e-88 335.0
6 TraesCS2D01G507400 chr7D 96.670 2012 49 9 1348 3343 332691734 332693743 0.000000e+00 3328.0
7 TraesCS2D01G507400 chr7D 97.064 545 16 0 707 1251 332690822 332691366 0.000000e+00 918.0
8 TraesCS2D01G507400 chr5A 93.850 2195 80 15 946 3104 576583021 576585196 0.000000e+00 3254.0
9 TraesCS2D01G507400 chr5A 86.932 352 36 8 35 385 409333906 409333564 1.710000e-103 387.0
10 TraesCS2D01G507400 chr5A 100.000 29 0 0 2 30 409333926 409333898 2.000000e-03 54.7
11 TraesCS2D01G507400 chr5B 94.346 2034 74 20 944 2941 562046867 562048895 0.000000e+00 3081.0
12 TraesCS2D01G507400 chr5B 93.067 851 57 2 707 1556 530921251 530922100 0.000000e+00 1243.0
13 TraesCS2D01G507400 chr5B 95.174 373 17 1 2539 2910 530922096 530922468 4.360000e-164 588.0
14 TraesCS2D01G507400 chr5B 91.748 206 17 0 3146 3351 663517459 663517254 1.780000e-73 287.0
15 TraesCS2D01G507400 chr5B 87.692 195 14 5 2935 3124 562048919 562049108 6.590000e-53 219.0
16 TraesCS2D01G507400 chr5D 93.923 2024 91 13 944 2941 458631187 458633204 0.000000e+00 3027.0
17 TraesCS2D01G507400 chr5D 91.322 242 20 1 707 948 532658374 532658134 2.920000e-86 329.0
18 TraesCS2D01G507400 chr5D 90.574 244 21 2 706 948 387823925 387823683 4.880000e-84 322.0
19 TraesCS2D01G507400 chr5D 87.879 198 14 6 2935 3124 458633230 458633425 1.420000e-54 224.0
20 TraesCS2D01G507400 chr5D 84.091 176 26 2 2360 2534 476462519 476462693 6.730000e-38 169.0
21 TraesCS2D01G507400 chr2A 92.790 1595 79 16 706 2283 461411591 461413166 0.000000e+00 2276.0
22 TraesCS2D01G507400 chr2A 94.444 612 33 1 2308 2918 461413372 461413983 0.000000e+00 941.0
23 TraesCS2D01G507400 chr2A 94.987 399 20 0 3517 3915 734512328 734511930 9.230000e-176 627.0
24 TraesCS2D01G507400 chr2A 91.457 199 17 0 3147 3345 703558320 703558122 1.390000e-69 274.0
25 TraesCS2D01G507400 chr2A 90.659 182 10 1 3346 3527 734512758 734512584 6.540000e-58 235.0
26 TraesCS2D01G507400 chr1B 92.595 1607 81 18 695 2283 520243471 520245057 0.000000e+00 2274.0
27 TraesCS2D01G507400 chr1B 94.118 612 35 1 2308 2918 520245263 520245874 0.000000e+00 929.0
28 TraesCS2D01G507400 chr1A 92.539 1595 81 18 707 2283 64842838 64844412 0.000000e+00 2252.0
29 TraesCS2D01G507400 chr1A 94.444 612 33 1 2308 2918 64844618 64845229 0.000000e+00 941.0
30 TraesCS2D01G507400 chr3B 92.150 1223 64 14 721 1930 568297324 568296121 0.000000e+00 1698.0
31 TraesCS2D01G507400 chr1D 95.604 728 31 1 705 1432 467357034 467357760 0.000000e+00 1166.0
32 TraesCS2D01G507400 chr1D 94.077 726 31 2 707 1432 476219404 476218691 0.000000e+00 1092.0
33 TraesCS2D01G507400 chr1D 97.423 194 5 0 3152 3345 467359766 467359959 8.110000e-87 331.0
34 TraesCS2D01G507400 chr1D 90.574 244 22 1 706 948 359714690 359714447 4.880000e-84 322.0
35 TraesCS2D01G507400 chr1D 93.500 200 12 1 3146 3345 476219206 476219404 2.960000e-76 296.0
36 TraesCS2D01G507400 chr1D 91.919 198 13 1 3152 3346 476217088 476216891 1.390000e-69 274.0
37 TraesCS2D01G507400 chr2B 94.857 525 20 1 3391 3915 731247610 731247093 0.000000e+00 813.0
38 TraesCS2D01G507400 chr3A 87.915 662 53 9 2 663 741090255 741090889 0.000000e+00 754.0
39 TraesCS2D01G507400 chr3A 86.611 478 43 9 221 698 741107050 741107506 3.490000e-140 508.0
40 TraesCS2D01G507400 chr3A 77.143 560 112 10 3346 3902 185156226 185156772 1.060000e-80 311.0
41 TraesCS2D01G507400 chr6D 86.156 679 73 16 35 697 193210077 193209404 0.000000e+00 713.0
42 TraesCS2D01G507400 chr6D 93.000 200 14 0 3146 3345 454293555 454293754 3.830000e-75 292.0
43 TraesCS2D01G507400 chr3D 91.500 200 17 0 3146 3345 519327689 519327490 3.850000e-70 276.0
44 TraesCS2D01G507400 chr3D 91.089 202 13 2 3146 3347 231173109 231173305 6.450000e-68 268.0
45 TraesCS2D01G507400 chr3D 84.127 63 9 1 3708 3769 560280038 560279976 4.220000e-05 60.2
46 TraesCS2D01G507400 chrUn 87.037 54 6 1 3708 3760 221378464 221378517 4.220000e-05 60.2
47 TraesCS2D01G507400 chrUn 87.037 54 6 1 3708 3760 225551589 225551642 4.220000e-05 60.2
48 TraesCS2D01G507400 chrUn 87.037 54 6 1 3708 3760 285618197 285618250 4.220000e-05 60.2
49 TraesCS2D01G507400 chrUn 84.127 63 9 1 3708 3769 306577314 306577252 4.220000e-05 60.2
50 TraesCS2D01G507400 chrUn 84.127 63 9 1 3708 3769 387971487 387971425 4.220000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G507400 chr2D 601054705 601058619 3914 True 7230.0 7230 100.0000 1 3915 1 chr2D.!!$R2 3914
1 TraesCS2D01G507400 chr4A 532160342 532162938 2596 False 2095.5 3856 95.0955 707 3347 2 chr4A.!!$F1 2640
2 TraesCS2D01G507400 chr7D 332690822 332693743 2921 False 2123.0 3328 96.8670 707 3343 2 chr7D.!!$F1 2636
3 TraesCS2D01G507400 chr5A 576583021 576585196 2175 False 3254.0 3254 93.8500 946 3104 1 chr5A.!!$F1 2158
4 TraesCS2D01G507400 chr5B 562046867 562049108 2241 False 1650.0 3081 91.0190 944 3124 2 chr5B.!!$F2 2180
5 TraesCS2D01G507400 chr5B 530921251 530922468 1217 False 915.5 1243 94.1205 707 2910 2 chr5B.!!$F1 2203
6 TraesCS2D01G507400 chr5D 458631187 458633425 2238 False 1625.5 3027 90.9010 944 3124 2 chr5D.!!$F2 2180
7 TraesCS2D01G507400 chr2A 461411591 461413983 2392 False 1608.5 2276 93.6170 706 2918 2 chr2A.!!$F1 2212
8 TraesCS2D01G507400 chr2A 734511930 734512758 828 True 431.0 627 92.8230 3346 3915 2 chr2A.!!$R2 569
9 TraesCS2D01G507400 chr1B 520243471 520245874 2403 False 1601.5 2274 93.3565 695 2918 2 chr1B.!!$F1 2223
10 TraesCS2D01G507400 chr1A 64842838 64845229 2391 False 1596.5 2252 93.4915 707 2918 2 chr1A.!!$F1 2211
11 TraesCS2D01G507400 chr3B 568296121 568297324 1203 True 1698.0 1698 92.1500 721 1930 1 chr3B.!!$R1 1209
12 TraesCS2D01G507400 chr1D 467357034 467359959 2925 False 748.5 1166 96.5135 705 3345 2 chr1D.!!$F2 2640
13 TraesCS2D01G507400 chr1D 476216891 476219404 2513 True 683.0 1092 92.9980 707 3346 2 chr1D.!!$R2 2639
14 TraesCS2D01G507400 chr2B 731247093 731247610 517 True 813.0 813 94.8570 3391 3915 1 chr2B.!!$R1 524
15 TraesCS2D01G507400 chr3A 741090255 741090889 634 False 754.0 754 87.9150 2 663 1 chr3A.!!$F2 661
16 TraesCS2D01G507400 chr3A 185156226 185156772 546 False 311.0 311 77.1430 3346 3902 1 chr3A.!!$F1 556
17 TraesCS2D01G507400 chr6D 193209404 193210077 673 True 713.0 713 86.1560 35 697 1 chr6D.!!$R1 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
649 650 0.031585 TGACTTTGTCTGTAGCGCGT 59.968 50.0 8.43 0.0 33.15 6.01 F
667 668 0.100682 GTGCGCTCCAGAGAACGATA 59.899 55.0 9.73 0.0 33.35 2.92 F
668 669 0.382158 TGCGCTCCAGAGAACGATAG 59.618 55.0 9.73 0.0 33.35 2.08 F
669 670 0.663688 GCGCTCCAGAGAACGATAGA 59.336 55.0 0.00 0.0 33.35 1.98 F
674 675 0.382158 CCAGAGAACGATAGAGCGCA 59.618 55.0 11.47 0.0 41.38 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 3508 2.049433 AGGAACTTCGCGGTCACG 60.049 61.111 6.13 0.0 38.60 4.35 R
2653 4780 0.322816 TTTGGCTCTCCTGCACCATC 60.323 55.000 0.00 0.0 34.04 3.51 R
2654 4781 0.610232 GTTTGGCTCTCCTGCACCAT 60.610 55.000 0.00 0.0 34.04 3.55 R
2655 4782 1.228245 GTTTGGCTCTCCTGCACCA 60.228 57.895 0.00 0.0 34.04 4.17 R
3128 5600 0.959372 AACGGACGGACGAGATGAGT 60.959 55.000 8.01 0.0 37.61 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 1.252904 GGTACGCCCTAGTGGACACA 61.253 60.000 5.14 0.00 39.28 3.72
121 122 4.143333 ATGGACTCGTTCGCCCCG 62.143 66.667 0.00 0.00 0.00 5.73
159 160 1.579698 CAGATGTCGCTCCTTCCATG 58.420 55.000 0.00 0.00 0.00 3.66
223 224 1.228862 GGTGCCACCCTTTCATGGT 60.229 57.895 1.17 0.00 38.34 3.55
224 225 1.250840 GGTGCCACCCTTTCATGGTC 61.251 60.000 1.17 0.00 38.34 4.02
225 226 0.251341 GTGCCACCCTTTCATGGTCT 60.251 55.000 0.00 0.00 38.34 3.85
226 227 0.038166 TGCCACCCTTTCATGGTCTC 59.962 55.000 0.00 0.00 38.34 3.36
227 228 0.681243 GCCACCCTTTCATGGTCTCC 60.681 60.000 0.00 0.00 38.34 3.71
228 229 0.698238 CCACCCTTTCATGGTCTCCA 59.302 55.000 0.00 0.00 38.19 3.86
229 230 1.285962 CCACCCTTTCATGGTCTCCAT 59.714 52.381 0.00 0.00 46.37 3.41
239 240 3.589951 ATGGTCTCCATGGAATCCTTG 57.410 47.619 25.62 8.09 43.39 3.61
240 241 2.561187 TGGTCTCCATGGAATCCTTGA 58.439 47.619 25.62 13.68 31.33 3.02
241 242 2.507058 TGGTCTCCATGGAATCCTTGAG 59.493 50.000 25.62 10.90 31.33 3.02
242 243 2.570135 GTCTCCATGGAATCCTTGAGC 58.430 52.381 17.00 0.40 31.33 4.26
243 244 2.092753 GTCTCCATGGAATCCTTGAGCA 60.093 50.000 17.00 0.18 31.33 4.26
244 245 2.092753 TCTCCATGGAATCCTTGAGCAC 60.093 50.000 17.00 0.00 31.33 4.40
245 246 1.064463 TCCATGGAATCCTTGAGCACC 60.064 52.381 13.46 0.00 31.33 5.01
246 247 1.341285 CCATGGAATCCTTGAGCACCA 60.341 52.381 15.80 0.00 31.33 4.17
247 248 2.449464 CATGGAATCCTTGAGCACCAA 58.551 47.619 9.34 0.00 31.33 3.67
248 249 1.909700 TGGAATCCTTGAGCACCAAC 58.090 50.000 0.00 0.00 0.00 3.77
249 250 1.144708 TGGAATCCTTGAGCACCAACA 59.855 47.619 0.00 0.00 0.00 3.33
250 251 2.225091 TGGAATCCTTGAGCACCAACAT 60.225 45.455 0.00 0.00 0.00 2.71
251 252 2.424956 GGAATCCTTGAGCACCAACATC 59.575 50.000 0.00 0.00 0.00 3.06
252 253 2.885135 ATCCTTGAGCACCAACATCA 57.115 45.000 0.00 0.00 0.00 3.07
253 254 2.189594 TCCTTGAGCACCAACATCAG 57.810 50.000 0.00 0.00 0.00 2.90
254 255 0.524862 CCTTGAGCACCAACATCAGC 59.475 55.000 0.00 0.00 0.00 4.26
255 256 0.167470 CTTGAGCACCAACATCAGCG 59.833 55.000 0.00 0.00 0.00 5.18
256 257 1.855213 TTGAGCACCAACATCAGCGC 61.855 55.000 0.00 0.00 0.00 5.92
257 258 3.044059 GAGCACCAACATCAGCGCC 62.044 63.158 2.29 0.00 0.00 6.53
258 259 4.120331 GCACCAACATCAGCGCCC 62.120 66.667 2.29 0.00 0.00 6.13
259 260 3.803082 CACCAACATCAGCGCCCG 61.803 66.667 2.29 0.00 0.00 6.13
263 264 3.781307 AACATCAGCGCCCGCCTA 61.781 61.111 2.29 0.00 43.17 3.93
264 265 3.740128 AACATCAGCGCCCGCCTAG 62.740 63.158 2.29 0.16 43.17 3.02
265 266 4.227134 CATCAGCGCCCGCCTAGT 62.227 66.667 2.29 0.00 43.17 2.57
266 267 4.227134 ATCAGCGCCCGCCTAGTG 62.227 66.667 2.29 1.19 43.17 2.74
275 276 3.956377 CGCCTAGTGGAGGGATGT 58.044 61.111 0.00 0.00 46.81 3.06
276 277 3.127099 CGCCTAGTGGAGGGATGTA 57.873 57.895 0.00 0.00 46.81 2.29
277 278 0.962489 CGCCTAGTGGAGGGATGTAG 59.038 60.000 0.00 0.00 46.81 2.74
278 279 1.478837 CGCCTAGTGGAGGGATGTAGA 60.479 57.143 0.00 0.00 46.81 2.59
279 280 2.679082 GCCTAGTGGAGGGATGTAGAA 58.321 52.381 0.00 0.00 46.81 2.10
280 281 2.365941 GCCTAGTGGAGGGATGTAGAAC 59.634 54.545 0.00 0.00 46.81 3.01
281 282 2.623889 CCTAGTGGAGGGATGTAGAACG 59.376 54.545 0.00 0.00 42.39 3.95
282 283 1.486211 AGTGGAGGGATGTAGAACGG 58.514 55.000 0.00 0.00 0.00 4.44
283 284 0.464452 GTGGAGGGATGTAGAACGGG 59.536 60.000 0.00 0.00 0.00 5.28
284 285 1.335132 TGGAGGGATGTAGAACGGGC 61.335 60.000 0.00 0.00 0.00 6.13
285 286 1.049289 GGAGGGATGTAGAACGGGCT 61.049 60.000 0.00 0.00 0.00 5.19
286 287 0.105039 GAGGGATGTAGAACGGGCTG 59.895 60.000 0.00 0.00 0.00 4.85
287 288 1.146263 GGGATGTAGAACGGGCTGG 59.854 63.158 0.00 0.00 0.00 4.85
288 289 1.523938 GGATGTAGAACGGGCTGGC 60.524 63.158 0.00 0.00 0.00 4.85
289 290 1.883084 GATGTAGAACGGGCTGGCG 60.883 63.158 0.00 0.00 0.00 5.69
290 291 2.292794 GATGTAGAACGGGCTGGCGA 62.293 60.000 0.00 0.00 0.00 5.54
291 292 2.508663 GTAGAACGGGCTGGCGAC 60.509 66.667 0.00 0.00 0.00 5.19
292 293 3.766691 TAGAACGGGCTGGCGACC 61.767 66.667 0.00 0.00 33.68 4.79
313 314 4.373116 GCGCAGGTGACCGAGGAA 62.373 66.667 0.30 0.00 0.00 3.36
314 315 2.125912 CGCAGGTGACCGAGGAAG 60.126 66.667 0.00 0.00 0.00 3.46
315 316 2.435059 GCAGGTGACCGAGGAAGC 60.435 66.667 0.00 0.00 0.00 3.86
316 317 3.059982 CAGGTGACCGAGGAAGCA 58.940 61.111 0.00 0.00 0.00 3.91
317 318 1.371183 CAGGTGACCGAGGAAGCAA 59.629 57.895 0.00 0.00 0.00 3.91
318 319 0.671781 CAGGTGACCGAGGAAGCAAG 60.672 60.000 0.00 0.00 0.00 4.01
319 320 2.035442 GGTGACCGAGGAAGCAAGC 61.035 63.158 0.00 0.00 0.00 4.01
320 321 2.035442 GTGACCGAGGAAGCAAGCC 61.035 63.158 0.00 0.00 0.00 4.35
321 322 2.436824 GACCGAGGAAGCAAGCCC 60.437 66.667 0.00 0.00 0.00 5.19
322 323 2.930562 ACCGAGGAAGCAAGCCCT 60.931 61.111 0.00 0.00 35.02 5.19
323 324 2.437359 CCGAGGAAGCAAGCCCTG 60.437 66.667 0.00 0.00 31.84 4.45
345 346 4.408821 GAGTGGCGTGCATCCCCA 62.409 66.667 5.63 2.61 0.00 4.96
346 347 4.415150 AGTGGCGTGCATCCCCAG 62.415 66.667 3.51 0.00 0.00 4.45
349 350 4.864334 GGCGTGCATCCCCAGGAG 62.864 72.222 0.00 0.00 34.05 3.69
350 351 4.864334 GCGTGCATCCCCAGGAGG 62.864 72.222 0.00 0.00 36.49 4.30
351 352 3.083349 CGTGCATCCCCAGGAGGA 61.083 66.667 0.00 0.00 35.26 3.71
352 353 2.914289 GTGCATCCCCAGGAGGAG 59.086 66.667 0.00 0.00 39.95 3.69
353 354 2.367377 TGCATCCCCAGGAGGAGG 60.367 66.667 0.00 4.66 39.95 4.30
355 356 2.367377 CATCCCCAGGAGGAGGCA 60.367 66.667 3.33 0.00 39.95 4.75
356 357 2.040043 ATCCCCAGGAGGAGGCAG 60.040 66.667 3.33 0.00 39.95 4.85
357 358 3.728305 ATCCCCAGGAGGAGGCAGG 62.728 68.421 3.33 0.00 39.95 4.85
358 359 4.421554 CCCCAGGAGGAGGCAGGA 62.422 72.222 0.00 0.00 38.24 3.86
359 360 2.767496 CCCAGGAGGAGGCAGGAG 60.767 72.222 0.00 0.00 38.24 3.69
360 361 2.767496 CCAGGAGGAGGCAGGAGG 60.767 72.222 0.00 0.00 36.89 4.30
361 362 2.366167 CAGGAGGAGGCAGGAGGA 59.634 66.667 0.00 0.00 0.00 3.71
362 363 1.761667 CAGGAGGAGGCAGGAGGAG 60.762 68.421 0.00 0.00 0.00 3.69
363 364 2.445654 GGAGGAGGCAGGAGGAGG 60.446 72.222 0.00 0.00 0.00 4.30
364 365 2.445654 GAGGAGGCAGGAGGAGGG 60.446 72.222 0.00 0.00 0.00 4.30
365 366 4.101077 AGGAGGCAGGAGGAGGGG 62.101 72.222 0.00 0.00 0.00 4.79
367 368 4.423209 GAGGCAGGAGGAGGGGGT 62.423 72.222 0.00 0.00 0.00 4.95
368 369 4.748798 AGGCAGGAGGAGGGGGTG 62.749 72.222 0.00 0.00 0.00 4.61
371 372 2.689034 CAGGAGGAGGGGGTGGTC 60.689 72.222 0.00 0.00 0.00 4.02
372 373 4.400251 AGGAGGAGGGGGTGGTCG 62.400 72.222 0.00 0.00 0.00 4.79
409 410 4.253257 GCTCGTCGCCGGGAGTAG 62.253 72.222 2.18 0.66 36.35 2.57
410 411 3.584052 CTCGTCGCCGGGAGTAGG 61.584 72.222 2.18 0.00 36.35 3.18
411 412 4.415150 TCGTCGCCGGGAGTAGGT 62.415 66.667 2.18 0.00 33.95 3.08
412 413 2.514592 CGTCGCCGGGAGTAGGTA 60.515 66.667 2.18 0.00 0.00 3.08
413 414 2.114670 CGTCGCCGGGAGTAGGTAA 61.115 63.158 2.18 0.00 0.00 2.85
414 415 1.732308 GTCGCCGGGAGTAGGTAAG 59.268 63.158 2.18 0.00 0.00 2.34
415 416 0.749454 GTCGCCGGGAGTAGGTAAGA 60.749 60.000 2.18 0.00 0.00 2.10
416 417 0.465097 TCGCCGGGAGTAGGTAAGAG 60.465 60.000 2.18 0.00 0.00 2.85
417 418 1.453762 CGCCGGGAGTAGGTAAGAGG 61.454 65.000 2.18 0.00 0.00 3.69
418 419 1.114119 GCCGGGAGTAGGTAAGAGGG 61.114 65.000 2.18 0.00 0.00 4.30
419 420 0.554792 CCGGGAGTAGGTAAGAGGGA 59.445 60.000 0.00 0.00 0.00 4.20
420 421 1.479021 CCGGGAGTAGGTAAGAGGGAG 60.479 61.905 0.00 0.00 0.00 4.30
421 422 1.707106 GGGAGTAGGTAAGAGGGAGC 58.293 60.000 0.00 0.00 0.00 4.70
422 423 1.320507 GGAGTAGGTAAGAGGGAGCG 58.679 60.000 0.00 0.00 0.00 5.03
423 424 1.320507 GAGTAGGTAAGAGGGAGCGG 58.679 60.000 0.00 0.00 0.00 5.52
424 425 0.756070 AGTAGGTAAGAGGGAGCGGC 60.756 60.000 0.00 0.00 0.00 6.53
425 426 1.826921 TAGGTAAGAGGGAGCGGCG 60.827 63.158 0.51 0.51 0.00 6.46
426 427 4.222847 GGTAAGAGGGAGCGGCGG 62.223 72.222 9.78 0.00 0.00 6.13
427 428 4.893601 GTAAGAGGGAGCGGCGGC 62.894 72.222 9.78 8.43 40.37 6.53
448 449 4.700365 GGGTTTGCTTGGCGCGAC 62.700 66.667 12.10 8.22 43.27 5.19
449 450 3.959975 GGTTTGCTTGGCGCGACA 61.960 61.111 12.71 12.71 43.27 4.35
450 451 2.725815 GTTTGCTTGGCGCGACAC 60.726 61.111 18.02 4.32 43.27 3.67
461 462 2.879462 GCGACACGCGTAGAAGGG 60.879 66.667 13.44 0.00 44.55 3.95
462 463 2.872557 CGACACGCGTAGAAGGGA 59.127 61.111 13.44 0.00 34.64 4.20
463 464 1.226323 CGACACGCGTAGAAGGGAG 60.226 63.158 13.44 0.00 34.64 4.30
464 465 1.139095 GACACGCGTAGAAGGGAGG 59.861 63.158 13.44 0.00 0.00 4.30
465 466 1.303888 ACACGCGTAGAAGGGAGGA 60.304 57.895 13.44 0.00 0.00 3.71
466 467 1.313812 ACACGCGTAGAAGGGAGGAG 61.314 60.000 13.44 0.00 0.00 3.69
467 468 1.753463 ACGCGTAGAAGGGAGGAGG 60.753 63.158 11.67 0.00 0.00 4.30
468 469 1.453379 CGCGTAGAAGGGAGGAGGA 60.453 63.158 0.00 0.00 0.00 3.71
469 470 1.726533 CGCGTAGAAGGGAGGAGGAC 61.727 65.000 0.00 0.00 0.00 3.85
470 471 1.393487 GCGTAGAAGGGAGGAGGACC 61.393 65.000 0.00 0.00 0.00 4.46
471 472 0.033405 CGTAGAAGGGAGGAGGACCA 60.033 60.000 0.00 0.00 38.94 4.02
472 473 1.783071 GTAGAAGGGAGGAGGACCAG 58.217 60.000 0.00 0.00 38.94 4.00
473 474 0.637195 TAGAAGGGAGGAGGACCAGG 59.363 60.000 0.00 0.00 38.94 4.45
474 475 2.285743 AAGGGAGGAGGACCAGGC 60.286 66.667 0.00 0.00 38.94 4.85
475 476 4.787280 AGGGAGGAGGACCAGGCG 62.787 72.222 0.00 0.00 38.94 5.52
509 510 3.812019 GAGGAGGAGCGCGACGAA 61.812 66.667 12.10 0.00 0.00 3.85
510 511 3.743091 GAGGAGGAGCGCGACGAAG 62.743 68.421 12.10 0.00 0.00 3.79
511 512 4.856607 GGAGGAGCGCGACGAAGG 62.857 72.222 12.10 0.00 0.00 3.46
512 513 4.856607 GAGGAGCGCGACGAAGGG 62.857 72.222 12.10 0.00 0.00 3.95
555 556 2.185350 CGGCAGTCGCTTCTCCAT 59.815 61.111 0.00 0.00 38.60 3.41
556 557 2.169789 CGGCAGTCGCTTCTCCATG 61.170 63.158 0.00 0.00 38.60 3.66
557 558 1.817099 GGCAGTCGCTTCTCCATGG 60.817 63.158 4.97 4.97 38.60 3.66
558 559 1.219124 GCAGTCGCTTCTCCATGGA 59.781 57.895 15.27 15.27 34.30 3.41
559 560 0.809241 GCAGTCGCTTCTCCATGGAG 60.809 60.000 32.60 32.60 38.18 3.86
560 561 0.179089 CAGTCGCTTCTCCATGGAGG 60.179 60.000 35.95 24.09 42.20 4.30
561 562 0.324738 AGTCGCTTCTCCATGGAGGA 60.325 55.000 35.95 29.56 46.75 3.71
568 569 3.745546 TCCATGGAGGAGGCTTGG 58.254 61.111 11.44 0.00 43.07 3.61
569 570 2.002977 TCCATGGAGGAGGCTTGGG 61.003 63.158 11.44 0.00 43.07 4.12
570 571 2.123982 CATGGAGGAGGCTTGGGC 60.124 66.667 0.00 0.00 37.82 5.36
571 572 3.801997 ATGGAGGAGGCTTGGGCG 61.802 66.667 0.00 0.00 39.81 6.13
588 589 3.936203 GGCAGGTGGTGTGACGGA 61.936 66.667 0.00 0.00 0.00 4.69
589 590 2.357517 GCAGGTGGTGTGACGGAG 60.358 66.667 0.00 0.00 0.00 4.63
590 591 2.343758 CAGGTGGTGTGACGGAGG 59.656 66.667 0.00 0.00 0.00 4.30
591 592 2.122989 AGGTGGTGTGACGGAGGT 60.123 61.111 0.00 0.00 0.00 3.85
592 593 2.030562 GGTGGTGTGACGGAGGTG 59.969 66.667 0.00 0.00 0.00 4.00
593 594 2.803817 GGTGGTGTGACGGAGGTGT 61.804 63.158 0.00 0.00 0.00 4.16
594 595 1.594293 GTGGTGTGACGGAGGTGTG 60.594 63.158 0.00 0.00 0.00 3.82
595 596 2.030562 GGTGTGACGGAGGTGTGG 59.969 66.667 0.00 0.00 0.00 4.17
596 597 2.030562 GTGTGACGGAGGTGTGGG 59.969 66.667 0.00 0.00 0.00 4.61
597 598 2.445085 TGTGACGGAGGTGTGGGT 60.445 61.111 0.00 0.00 0.00 4.51
598 599 2.030562 GTGACGGAGGTGTGGGTG 59.969 66.667 0.00 0.00 0.00 4.61
599 600 3.238497 TGACGGAGGTGTGGGTGG 61.238 66.667 0.00 0.00 0.00 4.61
600 601 3.239253 GACGGAGGTGTGGGTGGT 61.239 66.667 0.00 0.00 0.00 4.16
601 602 3.530910 GACGGAGGTGTGGGTGGTG 62.531 68.421 0.00 0.00 0.00 4.17
602 603 4.329545 CGGAGGTGTGGGTGGTGG 62.330 72.222 0.00 0.00 0.00 4.61
603 604 3.966543 GGAGGTGTGGGTGGTGGG 61.967 72.222 0.00 0.00 0.00 4.61
604 605 3.175710 GAGGTGTGGGTGGTGGGT 61.176 66.667 0.00 0.00 0.00 4.51
605 606 3.491598 GAGGTGTGGGTGGTGGGTG 62.492 68.421 0.00 0.00 0.00 4.61
606 607 3.494254 GGTGTGGGTGGTGGGTGA 61.494 66.667 0.00 0.00 0.00 4.02
607 608 2.113139 GTGTGGGTGGTGGGTGAG 59.887 66.667 0.00 0.00 0.00 3.51
608 609 2.367648 TGTGGGTGGTGGGTGAGT 60.368 61.111 0.00 0.00 0.00 3.41
609 610 2.113139 GTGGGTGGTGGGTGAGTG 59.887 66.667 0.00 0.00 0.00 3.51
610 611 3.174987 TGGGTGGTGGGTGAGTGG 61.175 66.667 0.00 0.00 0.00 4.00
611 612 2.852075 GGGTGGTGGGTGAGTGGA 60.852 66.667 0.00 0.00 0.00 4.02
612 613 2.231380 GGGTGGTGGGTGAGTGGAT 61.231 63.158 0.00 0.00 0.00 3.41
613 614 0.912487 GGGTGGTGGGTGAGTGGATA 60.912 60.000 0.00 0.00 0.00 2.59
614 615 0.988832 GGTGGTGGGTGAGTGGATAA 59.011 55.000 0.00 0.00 0.00 1.75
615 616 1.065418 GGTGGTGGGTGAGTGGATAAG 60.065 57.143 0.00 0.00 0.00 1.73
616 617 0.618458 TGGTGGGTGAGTGGATAAGC 59.382 55.000 0.00 0.00 0.00 3.09
617 618 0.618458 GGTGGGTGAGTGGATAAGCA 59.382 55.000 0.00 0.00 0.00 3.91
618 619 1.407437 GGTGGGTGAGTGGATAAGCAG 60.407 57.143 0.00 0.00 0.00 4.24
619 620 1.279271 GTGGGTGAGTGGATAAGCAGT 59.721 52.381 0.00 0.00 0.00 4.40
620 621 1.278985 TGGGTGAGTGGATAAGCAGTG 59.721 52.381 0.00 0.00 0.00 3.66
621 622 1.407437 GGGTGAGTGGATAAGCAGTGG 60.407 57.143 0.00 0.00 0.00 4.00
622 623 1.407437 GGTGAGTGGATAAGCAGTGGG 60.407 57.143 0.00 0.00 0.00 4.61
623 624 1.555075 GTGAGTGGATAAGCAGTGGGA 59.445 52.381 0.00 0.00 0.00 4.37
624 625 1.833630 TGAGTGGATAAGCAGTGGGAG 59.166 52.381 0.00 0.00 0.00 4.30
625 626 2.111384 GAGTGGATAAGCAGTGGGAGA 58.889 52.381 0.00 0.00 0.00 3.71
626 627 2.703007 GAGTGGATAAGCAGTGGGAGAT 59.297 50.000 0.00 0.00 0.00 2.75
627 628 2.437281 AGTGGATAAGCAGTGGGAGATG 59.563 50.000 0.00 0.00 0.00 2.90
628 629 1.770658 TGGATAAGCAGTGGGAGATGG 59.229 52.381 0.00 0.00 0.00 3.51
629 630 1.544314 GGATAAGCAGTGGGAGATGGC 60.544 57.143 0.00 0.00 0.00 4.40
630 631 1.419387 GATAAGCAGTGGGAGATGGCT 59.581 52.381 0.00 0.00 36.13 4.75
631 632 0.543277 TAAGCAGTGGGAGATGGCTG 59.457 55.000 0.00 0.00 34.56 4.85
632 633 1.203441 AAGCAGTGGGAGATGGCTGA 61.203 55.000 0.00 0.00 34.56 4.26
633 634 1.451028 GCAGTGGGAGATGGCTGAC 60.451 63.158 0.00 0.00 0.00 3.51
634 635 1.908340 GCAGTGGGAGATGGCTGACT 61.908 60.000 0.00 0.00 0.00 3.41
635 636 0.617413 CAGTGGGAGATGGCTGACTT 59.383 55.000 0.00 0.00 0.00 3.01
636 637 1.004044 CAGTGGGAGATGGCTGACTTT 59.996 52.381 0.00 0.00 0.00 2.66
637 638 1.004044 AGTGGGAGATGGCTGACTTTG 59.996 52.381 0.00 0.00 0.00 2.77
638 639 1.067295 TGGGAGATGGCTGACTTTGT 58.933 50.000 0.00 0.00 0.00 2.83
639 640 1.003580 TGGGAGATGGCTGACTTTGTC 59.996 52.381 0.00 0.00 0.00 3.18
640 641 1.280421 GGGAGATGGCTGACTTTGTCT 59.720 52.381 0.00 0.00 33.15 3.41
641 642 2.354259 GGAGATGGCTGACTTTGTCTG 58.646 52.381 0.00 0.32 35.18 3.51
642 643 2.289945 GGAGATGGCTGACTTTGTCTGT 60.290 50.000 6.49 0.00 34.68 3.41
643 644 3.055819 GGAGATGGCTGACTTTGTCTGTA 60.056 47.826 6.49 0.00 34.68 2.74
644 645 4.180057 GAGATGGCTGACTTTGTCTGTAG 58.820 47.826 6.49 0.00 34.68 2.74
645 646 2.169832 TGGCTGACTTTGTCTGTAGC 57.830 50.000 6.49 0.00 34.68 3.58
646 647 1.071605 GGCTGACTTTGTCTGTAGCG 58.928 55.000 6.49 0.00 34.68 4.26
647 648 0.440371 GCTGACTTTGTCTGTAGCGC 59.560 55.000 0.00 0.00 34.68 5.92
648 649 0.710567 CTGACTTTGTCTGTAGCGCG 59.289 55.000 0.00 0.00 33.15 6.86
649 650 0.031585 TGACTTTGTCTGTAGCGCGT 59.968 50.000 8.43 0.00 33.15 6.01
650 651 0.435008 GACTTTGTCTGTAGCGCGTG 59.565 55.000 8.43 0.00 0.00 5.34
651 652 1.130613 CTTTGTCTGTAGCGCGTGC 59.869 57.895 14.39 14.39 43.24 5.34
663 664 3.482783 GCGTGCGCTCCAGAGAAC 61.483 66.667 9.73 0.00 38.26 3.01
664 665 3.175240 CGTGCGCTCCAGAGAACG 61.175 66.667 9.73 3.16 34.69 3.95
665 666 2.258591 GTGCGCTCCAGAGAACGA 59.741 61.111 9.73 0.00 33.35 3.85
666 667 1.153745 GTGCGCTCCAGAGAACGAT 60.154 57.895 9.73 0.00 33.35 3.73
667 668 0.100682 GTGCGCTCCAGAGAACGATA 59.899 55.000 9.73 0.00 33.35 2.92
668 669 0.382158 TGCGCTCCAGAGAACGATAG 59.618 55.000 9.73 0.00 33.35 2.08
669 670 0.663688 GCGCTCCAGAGAACGATAGA 59.336 55.000 0.00 0.00 33.35 1.98
670 671 1.334599 GCGCTCCAGAGAACGATAGAG 60.335 57.143 0.00 0.00 33.35 2.43
671 672 1.334599 CGCTCCAGAGAACGATAGAGC 60.335 57.143 0.00 0.00 42.53 4.09
672 673 1.334599 GCTCCAGAGAACGATAGAGCG 60.335 57.143 0.00 0.00 37.59 5.03
673 674 0.663688 TCCAGAGAACGATAGAGCGC 59.336 55.000 0.00 0.00 41.38 5.92
674 675 0.382158 CCAGAGAACGATAGAGCGCA 59.618 55.000 11.47 0.00 41.38 6.09
675 676 1.599171 CCAGAGAACGATAGAGCGCAG 60.599 57.143 11.47 0.00 41.38 5.18
689 690 4.192000 GCAGCTGCGCTTTCTAGA 57.808 55.556 25.23 0.00 36.40 2.43
690 691 2.460330 GCAGCTGCGCTTTCTAGAA 58.540 52.632 25.23 0.00 36.40 2.10
691 692 1.012841 GCAGCTGCGCTTTCTAGAAT 58.987 50.000 25.23 0.00 36.40 2.40
692 693 1.399791 GCAGCTGCGCTTTCTAGAATT 59.600 47.619 25.23 0.00 36.40 2.17
693 694 2.159462 GCAGCTGCGCTTTCTAGAATTT 60.159 45.455 25.23 0.00 36.40 1.82
694 695 3.063997 GCAGCTGCGCTTTCTAGAATTTA 59.936 43.478 25.23 0.00 36.40 1.40
695 696 4.784710 GCAGCTGCGCTTTCTAGAATTTAG 60.785 45.833 25.23 2.05 36.40 1.85
696 697 3.873952 AGCTGCGCTTTCTAGAATTTAGG 59.126 43.478 9.73 0.00 33.89 2.69
697 698 3.623510 GCTGCGCTTTCTAGAATTTAGGT 59.376 43.478 9.73 0.00 0.00 3.08
698 699 4.095036 GCTGCGCTTTCTAGAATTTAGGTT 59.905 41.667 9.73 0.00 0.00 3.50
699 700 5.545658 TGCGCTTTCTAGAATTTAGGTTG 57.454 39.130 9.73 0.00 0.00 3.77
700 701 5.001232 TGCGCTTTCTAGAATTTAGGTTGT 58.999 37.500 9.73 0.00 0.00 3.32
701 702 5.472137 TGCGCTTTCTAGAATTTAGGTTGTT 59.528 36.000 9.73 0.00 0.00 2.83
702 703 6.016610 TGCGCTTTCTAGAATTTAGGTTGTTT 60.017 34.615 9.73 0.00 0.00 2.83
703 704 6.523546 GCGCTTTCTAGAATTTAGGTTGTTTC 59.476 38.462 5.89 0.00 0.00 2.78
724 725 1.294068 AGGAGGTAATAGCACCCCAGA 59.706 52.381 2.39 0.00 39.62 3.86
803 804 3.149196 ACCATACCTCAACTTGCACTTG 58.851 45.455 0.00 0.00 0.00 3.16
916 918 3.640967 CCCTGTTGTTTCCCTGAATCAAA 59.359 43.478 2.79 0.00 34.46 2.69
917 919 4.284234 CCCTGTTGTTTCCCTGAATCAAAT 59.716 41.667 2.79 0.00 34.46 2.32
2165 3896 3.433456 CCAACCTGAAGCCAACCAAATTT 60.433 43.478 0.00 0.00 0.00 1.82
2175 3906 2.545532 CCAACCAAATTTTGCGAGCTCA 60.546 45.455 15.40 0.00 0.00 4.26
2505 4626 1.004080 TGCTGCAGGTGCTCTTCTC 60.004 57.895 17.12 0.00 42.66 2.87
2988 5455 2.411748 GCGACATGTTTCACGATCAGAA 59.588 45.455 8.68 0.00 0.00 3.02
3128 5600 1.011968 CGACGCACCCGATTCTCAAA 61.012 55.000 0.00 0.00 38.29 2.69
3136 5608 3.868077 CACCCGATTCTCAAACTCATCTC 59.132 47.826 0.00 0.00 0.00 2.75
3283 5766 4.142038 GGTATGGTGGAGTCAAGTTTTGT 58.858 43.478 0.00 0.00 0.00 2.83
3395 5878 0.678048 ACCAAGCTCATCCGAAAGCC 60.678 55.000 0.00 0.00 39.39 4.35
3443 5926 2.169789 CGCCTTCTGACATGGCTCG 61.170 63.158 0.00 0.00 42.24 5.03
3605 6354 4.583073 CCATGATGGAGAATGATGCAAAGA 59.417 41.667 5.27 0.00 40.96 2.52
3701 6450 7.819415 TGCCTAATATAGATGAAGGTGAAATCG 59.181 37.037 2.05 0.00 0.00 3.34
3702 6451 7.819900 GCCTAATATAGATGAAGGTGAAATCGT 59.180 37.037 2.05 0.00 0.00 3.73
3746 6495 1.221414 GGCGGCAGACAGATACAATC 58.779 55.000 3.07 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.303155 GGCTTGCTGCTGAAGAGGT 60.303 57.895 0.00 0.00 42.39 3.85
9 10 2.987547 GGCTGGCTTGCTGCTGAA 60.988 61.111 0.00 0.00 42.39 3.02
84 85 1.835267 TGTGTGTCCACTAGGGCGT 60.835 57.895 0.00 0.00 44.71 5.68
100 101 1.374252 GGCGAACGAGTCCATGTGT 60.374 57.895 0.00 0.00 0.00 3.72
121 122 3.112709 GACGCCGAGTTGCTGGTC 61.113 66.667 0.00 0.00 0.00 4.02
129 130 3.685214 GACATCTGCGACGCCGAGT 62.685 63.158 18.69 15.27 38.22 4.18
139 140 0.179062 ATGGAAGGAGCGACATCTGC 60.179 55.000 0.00 0.00 0.00 4.26
142 143 1.162800 GCCATGGAAGGAGCGACATC 61.163 60.000 18.40 0.00 0.00 3.06
164 165 3.391382 GTGAGGGTCCTGGACGGG 61.391 72.222 19.98 0.00 32.65 5.28
167 168 0.836400 TCAAGGTGAGGGTCCTGGAC 60.836 60.000 18.65 18.65 35.27 4.02
219 220 3.125656 TCAAGGATTCCATGGAGACCAT 58.874 45.455 28.77 20.21 46.37 3.55
223 224 2.092753 GTGCTCAAGGATTCCATGGAGA 60.093 50.000 15.53 6.74 0.00 3.71
224 225 2.295885 GTGCTCAAGGATTCCATGGAG 58.704 52.381 15.53 10.15 0.00 3.86
225 226 1.064463 GGTGCTCAAGGATTCCATGGA 60.064 52.381 11.44 11.44 0.00 3.41
226 227 1.341285 TGGTGCTCAAGGATTCCATGG 60.341 52.381 4.97 4.97 0.00 3.66
227 228 2.133281 TGGTGCTCAAGGATTCCATG 57.867 50.000 5.29 3.23 0.00 3.66
228 229 2.225091 TGTTGGTGCTCAAGGATTCCAT 60.225 45.455 5.29 0.00 35.80 3.41
229 230 1.144708 TGTTGGTGCTCAAGGATTCCA 59.855 47.619 5.29 0.00 35.80 3.53
230 231 1.909700 TGTTGGTGCTCAAGGATTCC 58.090 50.000 0.00 0.00 35.80 3.01
231 232 3.084039 TGATGTTGGTGCTCAAGGATTC 58.916 45.455 0.00 0.00 35.80 2.52
232 233 3.087031 CTGATGTTGGTGCTCAAGGATT 58.913 45.455 0.00 0.00 35.80 3.01
233 234 2.719739 CTGATGTTGGTGCTCAAGGAT 58.280 47.619 0.00 0.00 35.80 3.24
234 235 1.883638 GCTGATGTTGGTGCTCAAGGA 60.884 52.381 0.00 0.00 35.80 3.36
235 236 0.524862 GCTGATGTTGGTGCTCAAGG 59.475 55.000 0.00 0.00 35.80 3.61
236 237 0.167470 CGCTGATGTTGGTGCTCAAG 59.833 55.000 0.00 0.00 35.80 3.02
237 238 1.855213 GCGCTGATGTTGGTGCTCAA 61.855 55.000 0.00 0.00 36.23 3.02
238 239 2.327343 GCGCTGATGTTGGTGCTCA 61.327 57.895 0.00 0.00 36.23 4.26
239 240 2.482374 GCGCTGATGTTGGTGCTC 59.518 61.111 0.00 0.00 36.23 4.26
240 241 3.058160 GGCGCTGATGTTGGTGCT 61.058 61.111 7.64 0.00 38.76 4.40
241 242 4.120331 GGGCGCTGATGTTGGTGC 62.120 66.667 7.64 0.00 38.12 5.01
242 243 3.803082 CGGGCGCTGATGTTGGTG 61.803 66.667 7.64 0.00 0.00 4.17
246 247 3.740128 CTAGGCGGGCGCTGATGTT 62.740 63.158 7.64 0.00 41.60 2.71
247 248 4.227134 CTAGGCGGGCGCTGATGT 62.227 66.667 7.64 0.00 41.60 3.06
248 249 4.227134 ACTAGGCGGGCGCTGATG 62.227 66.667 7.64 0.00 41.60 3.07
249 250 4.227134 CACTAGGCGGGCGCTGAT 62.227 66.667 7.64 0.00 41.60 2.90
257 258 0.469331 TACATCCCTCCACTAGGCGG 60.469 60.000 0.00 0.00 45.03 6.13
258 259 0.962489 CTACATCCCTCCACTAGGCG 59.038 60.000 0.00 0.00 45.03 5.52
259 260 2.365941 GTTCTACATCCCTCCACTAGGC 59.634 54.545 0.00 0.00 45.03 3.93
260 261 2.623889 CGTTCTACATCCCTCCACTAGG 59.376 54.545 0.00 0.00 46.09 3.02
261 262 2.623889 CCGTTCTACATCCCTCCACTAG 59.376 54.545 0.00 0.00 0.00 2.57
262 263 2.662866 CCGTTCTACATCCCTCCACTA 58.337 52.381 0.00 0.00 0.00 2.74
263 264 1.486211 CCGTTCTACATCCCTCCACT 58.514 55.000 0.00 0.00 0.00 4.00
264 265 0.464452 CCCGTTCTACATCCCTCCAC 59.536 60.000 0.00 0.00 0.00 4.02
265 266 1.335132 GCCCGTTCTACATCCCTCCA 61.335 60.000 0.00 0.00 0.00 3.86
266 267 1.049289 AGCCCGTTCTACATCCCTCC 61.049 60.000 0.00 0.00 0.00 4.30
267 268 0.105039 CAGCCCGTTCTACATCCCTC 59.895 60.000 0.00 0.00 0.00 4.30
268 269 1.338136 CCAGCCCGTTCTACATCCCT 61.338 60.000 0.00 0.00 0.00 4.20
269 270 1.146263 CCAGCCCGTTCTACATCCC 59.854 63.158 0.00 0.00 0.00 3.85
270 271 1.523938 GCCAGCCCGTTCTACATCC 60.524 63.158 0.00 0.00 0.00 3.51
271 272 1.883084 CGCCAGCCCGTTCTACATC 60.883 63.158 0.00 0.00 0.00 3.06
272 273 2.186903 CGCCAGCCCGTTCTACAT 59.813 61.111 0.00 0.00 0.00 2.29
273 274 2.992689 TCGCCAGCCCGTTCTACA 60.993 61.111 0.00 0.00 0.00 2.74
274 275 2.508663 GTCGCCAGCCCGTTCTAC 60.509 66.667 0.00 0.00 0.00 2.59
275 276 3.766691 GGTCGCCAGCCCGTTCTA 61.767 66.667 0.00 0.00 0.00 2.10
296 297 4.373116 TTCCTCGGTCACCTGCGC 62.373 66.667 0.00 0.00 0.00 6.09
297 298 2.125912 CTTCCTCGGTCACCTGCG 60.126 66.667 0.00 0.00 0.00 5.18
298 299 2.435059 GCTTCCTCGGTCACCTGC 60.435 66.667 0.00 0.00 0.00 4.85
299 300 0.671781 CTTGCTTCCTCGGTCACCTG 60.672 60.000 0.00 0.00 0.00 4.00
300 301 1.674057 CTTGCTTCCTCGGTCACCT 59.326 57.895 0.00 0.00 0.00 4.00
301 302 2.035442 GCTTGCTTCCTCGGTCACC 61.035 63.158 0.00 0.00 0.00 4.02
302 303 2.035442 GGCTTGCTTCCTCGGTCAC 61.035 63.158 0.00 0.00 0.00 3.67
303 304 2.347490 GGCTTGCTTCCTCGGTCA 59.653 61.111 0.00 0.00 0.00 4.02
304 305 2.436824 GGGCTTGCTTCCTCGGTC 60.437 66.667 0.00 0.00 0.00 4.79
305 306 2.930562 AGGGCTTGCTTCCTCGGT 60.931 61.111 0.00 0.00 0.00 4.69
306 307 2.437359 CAGGGCTTGCTTCCTCGG 60.437 66.667 0.00 0.00 0.00 4.63
333 334 4.864334 CCTCCTGGGGATGCACGC 62.864 72.222 0.00 0.00 0.00 5.34
334 335 3.083349 TCCTCCTGGGGATGCACG 61.083 66.667 0.00 0.00 35.33 5.34
335 336 2.750657 CCTCCTCCTGGGGATGCAC 61.751 68.421 0.00 0.00 35.23 4.57
336 337 2.367377 CCTCCTCCTGGGGATGCA 60.367 66.667 0.00 0.00 35.23 3.96
337 338 3.883549 GCCTCCTCCTGGGGATGC 61.884 72.222 12.90 12.90 39.16 3.91
338 339 2.367377 TGCCTCCTCCTGGGGATG 60.367 66.667 0.00 0.00 35.23 3.51
339 340 2.040043 CTGCCTCCTCCTGGGGAT 60.040 66.667 0.00 0.00 35.23 3.85
340 341 4.421554 CCTGCCTCCTCCTGGGGA 62.422 72.222 0.00 0.00 35.23 4.81
341 342 4.421554 TCCTGCCTCCTCCTGGGG 62.422 72.222 0.00 0.00 35.33 4.96
342 343 2.767496 CTCCTGCCTCCTCCTGGG 60.767 72.222 0.00 0.00 0.00 4.45
343 344 2.767496 CCTCCTGCCTCCTCCTGG 60.767 72.222 0.00 0.00 0.00 4.45
344 345 1.761667 CTCCTCCTGCCTCCTCCTG 60.762 68.421 0.00 0.00 0.00 3.86
345 346 2.695597 CTCCTCCTGCCTCCTCCT 59.304 66.667 0.00 0.00 0.00 3.69
346 347 2.445654 CCTCCTCCTGCCTCCTCC 60.446 72.222 0.00 0.00 0.00 4.30
347 348 2.445654 CCCTCCTCCTGCCTCCTC 60.446 72.222 0.00 0.00 0.00 3.71
348 349 4.101077 CCCCTCCTCCTGCCTCCT 62.101 72.222 0.00 0.00 0.00 3.69
350 351 4.423209 ACCCCCTCCTCCTGCCTC 62.423 72.222 0.00 0.00 0.00 4.70
351 352 4.748798 CACCCCCTCCTCCTGCCT 62.749 72.222 0.00 0.00 0.00 4.75
354 355 2.689034 GACCACCCCCTCCTCCTG 60.689 72.222 0.00 0.00 0.00 3.86
355 356 4.400251 CGACCACCCCCTCCTCCT 62.400 72.222 0.00 0.00 0.00 3.69
396 397 0.749454 TCTTACCTACTCCCGGCGAC 60.749 60.000 9.30 0.00 0.00 5.19
397 398 0.465097 CTCTTACCTACTCCCGGCGA 60.465 60.000 9.30 0.00 0.00 5.54
398 399 1.453762 CCTCTTACCTACTCCCGGCG 61.454 65.000 0.00 0.00 0.00 6.46
399 400 1.114119 CCCTCTTACCTACTCCCGGC 61.114 65.000 0.00 0.00 0.00 6.13
400 401 0.554792 TCCCTCTTACCTACTCCCGG 59.445 60.000 0.00 0.00 0.00 5.73
401 402 1.984066 CTCCCTCTTACCTACTCCCG 58.016 60.000 0.00 0.00 0.00 5.14
402 403 1.707106 GCTCCCTCTTACCTACTCCC 58.293 60.000 0.00 0.00 0.00 4.30
403 404 1.320507 CGCTCCCTCTTACCTACTCC 58.679 60.000 0.00 0.00 0.00 3.85
404 405 1.320507 CCGCTCCCTCTTACCTACTC 58.679 60.000 0.00 0.00 0.00 2.59
405 406 0.756070 GCCGCTCCCTCTTACCTACT 60.756 60.000 0.00 0.00 0.00 2.57
406 407 1.740905 GCCGCTCCCTCTTACCTAC 59.259 63.158 0.00 0.00 0.00 3.18
407 408 1.826921 CGCCGCTCCCTCTTACCTA 60.827 63.158 0.00 0.00 0.00 3.08
408 409 3.148279 CGCCGCTCCCTCTTACCT 61.148 66.667 0.00 0.00 0.00 3.08
409 410 4.222847 CCGCCGCTCCCTCTTACC 62.223 72.222 0.00 0.00 0.00 2.85
410 411 4.893601 GCCGCCGCTCCCTCTTAC 62.894 72.222 0.00 0.00 0.00 2.34
445 446 1.226323 CTCCCTTCTACGCGTGTCG 60.226 63.158 24.59 10.42 45.38 4.35
446 447 1.139095 CCTCCCTTCTACGCGTGTC 59.861 63.158 24.59 0.00 0.00 3.67
447 448 1.303888 TCCTCCCTTCTACGCGTGT 60.304 57.895 24.59 6.91 0.00 4.49
448 449 1.433879 CTCCTCCCTTCTACGCGTG 59.566 63.158 24.59 12.26 0.00 5.34
449 450 1.753463 CCTCCTCCCTTCTACGCGT 60.753 63.158 19.17 19.17 0.00 6.01
450 451 1.453379 TCCTCCTCCCTTCTACGCG 60.453 63.158 3.53 3.53 0.00 6.01
451 452 1.393487 GGTCCTCCTCCCTTCTACGC 61.393 65.000 0.00 0.00 0.00 4.42
452 453 0.033405 TGGTCCTCCTCCCTTCTACG 60.033 60.000 0.00 0.00 34.23 3.51
453 454 1.689892 CCTGGTCCTCCTCCCTTCTAC 60.690 61.905 0.00 0.00 34.23 2.59
454 455 0.637195 CCTGGTCCTCCTCCCTTCTA 59.363 60.000 0.00 0.00 34.23 2.10
455 456 1.394151 CCTGGTCCTCCTCCCTTCT 59.606 63.158 0.00 0.00 34.23 2.85
456 457 2.371259 GCCTGGTCCTCCTCCCTTC 61.371 68.421 0.00 0.00 34.23 3.46
457 458 2.285743 GCCTGGTCCTCCTCCCTT 60.286 66.667 0.00 0.00 34.23 3.95
458 459 4.787280 CGCCTGGTCCTCCTCCCT 62.787 72.222 0.00 0.00 34.23 4.20
483 484 2.907917 CTCCTCCTCCCGGCTACG 60.908 72.222 0.00 0.00 40.55 3.51
484 485 3.228017 GCTCCTCCTCCCGGCTAC 61.228 72.222 0.00 0.00 0.00 3.58
485 486 4.896829 CGCTCCTCCTCCCGGCTA 62.897 72.222 0.00 0.00 0.00 3.93
492 493 3.743091 CTTCGTCGCGCTCCTCCTC 62.743 68.421 5.56 0.00 0.00 3.71
493 494 3.816524 CTTCGTCGCGCTCCTCCT 61.817 66.667 5.56 0.00 0.00 3.69
494 495 4.856607 CCTTCGTCGCGCTCCTCC 62.857 72.222 5.56 0.00 0.00 4.30
495 496 4.856607 CCCTTCGTCGCGCTCCTC 62.857 72.222 5.56 0.00 0.00 3.71
514 515 4.559063 CTGCTCCTCCGGGCCATG 62.559 72.222 4.39 0.00 0.00 3.66
538 539 2.169789 CATGGAGAAGCGACTGCCG 61.170 63.158 0.00 0.00 44.31 5.69
539 540 1.817099 CCATGGAGAAGCGACTGCC 60.817 63.158 5.56 0.00 44.31 4.85
540 541 0.809241 CTCCATGGAGAAGCGACTGC 60.809 60.000 34.54 0.00 44.53 4.40
541 542 0.179089 CCTCCATGGAGAAGCGACTG 60.179 60.000 38.37 18.03 44.53 3.51
542 543 0.324738 TCCTCCATGGAGAAGCGACT 60.325 55.000 38.37 0.00 44.53 4.18
543 544 2.202866 TCCTCCATGGAGAAGCGAC 58.797 57.895 38.37 0.00 44.53 5.19
544 545 4.785575 TCCTCCATGGAGAAGCGA 57.214 55.556 38.37 25.13 44.53 4.93
551 552 2.002977 CCCAAGCCTCCTCCATGGA 61.003 63.158 15.27 15.27 43.86 3.41
552 553 2.599597 CCCAAGCCTCCTCCATGG 59.400 66.667 4.97 4.97 37.10 3.66
553 554 2.123982 GCCCAAGCCTCCTCCATG 60.124 66.667 0.00 0.00 0.00 3.66
554 555 3.801997 CGCCCAAGCCTCCTCCAT 61.802 66.667 0.00 0.00 34.57 3.41
571 572 3.883744 CTCCGTCACACCACCTGCC 62.884 68.421 0.00 0.00 0.00 4.85
572 573 2.357517 CTCCGTCACACCACCTGC 60.358 66.667 0.00 0.00 0.00 4.85
573 574 2.343758 CCTCCGTCACACCACCTG 59.656 66.667 0.00 0.00 0.00 4.00
574 575 2.122989 ACCTCCGTCACACCACCT 60.123 61.111 0.00 0.00 0.00 4.00
575 576 2.030562 CACCTCCGTCACACCACC 59.969 66.667 0.00 0.00 0.00 4.61
576 577 1.594293 CACACCTCCGTCACACCAC 60.594 63.158 0.00 0.00 0.00 4.16
577 578 2.802724 CCACACCTCCGTCACACCA 61.803 63.158 0.00 0.00 0.00 4.17
578 579 2.030562 CCACACCTCCGTCACACC 59.969 66.667 0.00 0.00 0.00 4.16
579 580 2.030562 CCCACACCTCCGTCACAC 59.969 66.667 0.00 0.00 0.00 3.82
580 581 2.445085 ACCCACACCTCCGTCACA 60.445 61.111 0.00 0.00 0.00 3.58
581 582 2.030562 CACCCACACCTCCGTCAC 59.969 66.667 0.00 0.00 0.00 3.67
582 583 3.238497 CCACCCACACCTCCGTCA 61.238 66.667 0.00 0.00 0.00 4.35
583 584 3.239253 ACCACCCACACCTCCGTC 61.239 66.667 0.00 0.00 0.00 4.79
584 585 3.556306 CACCACCCACACCTCCGT 61.556 66.667 0.00 0.00 0.00 4.69
585 586 4.329545 CCACCACCCACACCTCCG 62.330 72.222 0.00 0.00 0.00 4.63
586 587 3.966543 CCCACCACCCACACCTCC 61.967 72.222 0.00 0.00 0.00 4.30
587 588 3.175710 ACCCACCACCCACACCTC 61.176 66.667 0.00 0.00 0.00 3.85
588 589 3.498071 CACCCACCACCCACACCT 61.498 66.667 0.00 0.00 0.00 4.00
589 590 3.491598 CTCACCCACCACCCACACC 62.492 68.421 0.00 0.00 0.00 4.16
590 591 2.113139 CTCACCCACCACCCACAC 59.887 66.667 0.00 0.00 0.00 3.82
591 592 2.367648 ACTCACCCACCACCCACA 60.368 61.111 0.00 0.00 0.00 4.17
592 593 2.113139 CACTCACCCACCACCCAC 59.887 66.667 0.00 0.00 0.00 4.61
593 594 3.174987 CCACTCACCCACCACCCA 61.175 66.667 0.00 0.00 0.00 4.51
594 595 0.912487 TATCCACTCACCCACCACCC 60.912 60.000 0.00 0.00 0.00 4.61
595 596 0.988832 TTATCCACTCACCCACCACC 59.011 55.000 0.00 0.00 0.00 4.61
596 597 1.679032 GCTTATCCACTCACCCACCAC 60.679 57.143 0.00 0.00 0.00 4.16
597 598 0.618458 GCTTATCCACTCACCCACCA 59.382 55.000 0.00 0.00 0.00 4.17
598 599 0.618458 TGCTTATCCACTCACCCACC 59.382 55.000 0.00 0.00 0.00 4.61
599 600 1.279271 ACTGCTTATCCACTCACCCAC 59.721 52.381 0.00 0.00 0.00 4.61
600 601 1.278985 CACTGCTTATCCACTCACCCA 59.721 52.381 0.00 0.00 0.00 4.51
601 602 1.407437 CCACTGCTTATCCACTCACCC 60.407 57.143 0.00 0.00 0.00 4.61
602 603 1.407437 CCCACTGCTTATCCACTCACC 60.407 57.143 0.00 0.00 0.00 4.02
603 604 1.555075 TCCCACTGCTTATCCACTCAC 59.445 52.381 0.00 0.00 0.00 3.51
604 605 1.833630 CTCCCACTGCTTATCCACTCA 59.166 52.381 0.00 0.00 0.00 3.41
605 606 2.111384 TCTCCCACTGCTTATCCACTC 58.889 52.381 0.00 0.00 0.00 3.51
606 607 2.254152 TCTCCCACTGCTTATCCACT 57.746 50.000 0.00 0.00 0.00 4.00
607 608 2.486191 CCATCTCCCACTGCTTATCCAC 60.486 54.545 0.00 0.00 0.00 4.02
608 609 1.770658 CCATCTCCCACTGCTTATCCA 59.229 52.381 0.00 0.00 0.00 3.41
609 610 1.544314 GCCATCTCCCACTGCTTATCC 60.544 57.143 0.00 0.00 0.00 2.59
610 611 1.419387 AGCCATCTCCCACTGCTTATC 59.581 52.381 0.00 0.00 0.00 1.75
611 612 1.142465 CAGCCATCTCCCACTGCTTAT 59.858 52.381 0.00 0.00 0.00 1.73
612 613 0.543277 CAGCCATCTCCCACTGCTTA 59.457 55.000 0.00 0.00 0.00 3.09
613 614 1.203441 TCAGCCATCTCCCACTGCTT 61.203 55.000 0.00 0.00 0.00 3.91
614 615 1.614525 TCAGCCATCTCCCACTGCT 60.615 57.895 0.00 0.00 0.00 4.24
615 616 1.451028 GTCAGCCATCTCCCACTGC 60.451 63.158 0.00 0.00 0.00 4.40
616 617 0.617413 AAGTCAGCCATCTCCCACTG 59.383 55.000 0.00 0.00 0.00 3.66
617 618 1.004044 CAAAGTCAGCCATCTCCCACT 59.996 52.381 0.00 0.00 0.00 4.00
618 619 1.271597 ACAAAGTCAGCCATCTCCCAC 60.272 52.381 0.00 0.00 0.00 4.61
619 620 1.003580 GACAAAGTCAGCCATCTCCCA 59.996 52.381 0.00 0.00 32.09 4.37
620 621 1.280421 AGACAAAGTCAGCCATCTCCC 59.720 52.381 0.00 0.00 34.60 4.30
621 622 2.289945 ACAGACAAAGTCAGCCATCTCC 60.290 50.000 0.00 0.00 34.60 3.71
622 623 3.051081 ACAGACAAAGTCAGCCATCTC 57.949 47.619 0.00 0.00 34.60 2.75
623 624 3.618507 GCTACAGACAAAGTCAGCCATCT 60.619 47.826 0.00 0.00 34.60 2.90
624 625 2.675348 GCTACAGACAAAGTCAGCCATC 59.325 50.000 0.00 0.00 34.60 3.51
625 626 2.704572 GCTACAGACAAAGTCAGCCAT 58.295 47.619 0.00 0.00 34.60 4.40
626 627 1.605457 CGCTACAGACAAAGTCAGCCA 60.605 52.381 0.00 0.00 34.60 4.75
627 628 1.071605 CGCTACAGACAAAGTCAGCC 58.928 55.000 0.00 0.00 34.60 4.85
628 629 0.440371 GCGCTACAGACAAAGTCAGC 59.560 55.000 0.00 0.00 34.60 4.26
629 630 0.710567 CGCGCTACAGACAAAGTCAG 59.289 55.000 5.56 0.00 34.60 3.51
630 631 0.031585 ACGCGCTACAGACAAAGTCA 59.968 50.000 5.73 0.00 34.60 3.41
631 632 0.435008 CACGCGCTACAGACAAAGTC 59.565 55.000 5.73 0.00 0.00 3.01
632 633 1.557443 GCACGCGCTACAGACAAAGT 61.557 55.000 5.73 0.00 34.30 2.66
633 634 1.130613 GCACGCGCTACAGACAAAG 59.869 57.895 5.73 0.00 34.30 2.77
634 635 2.653967 CGCACGCGCTACAGACAAA 61.654 57.895 5.73 0.00 35.30 2.83
635 636 3.103289 CGCACGCGCTACAGACAA 61.103 61.111 5.73 0.00 35.30 3.18
646 647 3.482783 GTTCTCTGGAGCGCACGC 61.483 66.667 11.47 6.99 42.33 5.34
647 648 2.874010 ATCGTTCTCTGGAGCGCACG 62.874 60.000 11.47 8.40 43.95 5.34
648 649 0.100682 TATCGTTCTCTGGAGCGCAC 59.899 55.000 11.47 1.97 43.95 5.34
649 650 0.382158 CTATCGTTCTCTGGAGCGCA 59.618 55.000 11.47 0.00 43.95 6.09
650 651 0.663688 TCTATCGTTCTCTGGAGCGC 59.336 55.000 0.00 0.00 43.95 5.92
651 652 1.334599 GCTCTATCGTTCTCTGGAGCG 60.335 57.143 0.00 0.00 45.26 5.03
652 653 1.334599 CGCTCTATCGTTCTCTGGAGC 60.335 57.143 0.00 0.00 41.59 4.70
653 654 1.334599 GCGCTCTATCGTTCTCTGGAG 60.335 57.143 0.00 0.00 0.00 3.86
654 655 0.663688 GCGCTCTATCGTTCTCTGGA 59.336 55.000 0.00 0.00 0.00 3.86
655 656 0.382158 TGCGCTCTATCGTTCTCTGG 59.618 55.000 9.73 0.00 0.00 3.86
656 657 1.752753 CTGCGCTCTATCGTTCTCTG 58.247 55.000 9.73 0.00 0.00 3.35
657 658 0.030101 GCTGCGCTCTATCGTTCTCT 59.970 55.000 9.73 0.00 0.00 3.10
658 659 0.030101 AGCTGCGCTCTATCGTTCTC 59.970 55.000 9.73 0.00 30.62 2.87
659 660 0.248825 CAGCTGCGCTCTATCGTTCT 60.249 55.000 9.73 0.00 36.40 3.01
660 661 1.816214 GCAGCTGCGCTCTATCGTTC 61.816 60.000 25.23 0.00 36.40 3.95
661 662 1.880340 GCAGCTGCGCTCTATCGTT 60.880 57.895 25.23 0.00 36.40 3.85
662 663 2.279120 GCAGCTGCGCTCTATCGT 60.279 61.111 25.23 0.00 36.40 3.73
676 677 5.122396 ACAACCTAAATTCTAGAAAGCGCAG 59.878 40.000 11.47 0.00 0.00 5.18
677 678 5.001232 ACAACCTAAATTCTAGAAAGCGCA 58.999 37.500 11.47 0.00 0.00 6.09
678 679 5.547181 ACAACCTAAATTCTAGAAAGCGC 57.453 39.130 9.71 0.00 0.00 5.92
679 680 7.581476 TGAAACAACCTAAATTCTAGAAAGCG 58.419 34.615 9.71 0.32 0.00 4.68
680 681 8.023706 CCTGAAACAACCTAAATTCTAGAAAGC 58.976 37.037 9.71 0.00 0.00 3.51
681 682 9.284968 TCCTGAAACAACCTAAATTCTAGAAAG 57.715 33.333 9.71 2.39 0.00 2.62
682 683 9.284968 CTCCTGAAACAACCTAAATTCTAGAAA 57.715 33.333 9.71 0.00 0.00 2.52
683 684 7.883311 CCTCCTGAAACAACCTAAATTCTAGAA 59.117 37.037 7.82 7.82 0.00 2.10
684 685 7.017254 ACCTCCTGAAACAACCTAAATTCTAGA 59.983 37.037 0.00 0.00 0.00 2.43
685 686 7.168905 ACCTCCTGAAACAACCTAAATTCTAG 58.831 38.462 0.00 0.00 0.00 2.43
686 687 7.086685 ACCTCCTGAAACAACCTAAATTCTA 57.913 36.000 0.00 0.00 0.00 2.10
687 688 5.953571 ACCTCCTGAAACAACCTAAATTCT 58.046 37.500 0.00 0.00 0.00 2.40
688 689 7.754851 TTACCTCCTGAAACAACCTAAATTC 57.245 36.000 0.00 0.00 0.00 2.17
689 690 9.462606 CTATTACCTCCTGAAACAACCTAAATT 57.537 33.333 0.00 0.00 0.00 1.82
690 691 7.556635 GCTATTACCTCCTGAAACAACCTAAAT 59.443 37.037 0.00 0.00 0.00 1.40
691 692 6.882678 GCTATTACCTCCTGAAACAACCTAAA 59.117 38.462 0.00 0.00 0.00 1.85
692 693 6.013206 TGCTATTACCTCCTGAAACAACCTAA 60.013 38.462 0.00 0.00 0.00 2.69
693 694 5.486063 TGCTATTACCTCCTGAAACAACCTA 59.514 40.000 0.00 0.00 0.00 3.08
694 695 4.288626 TGCTATTACCTCCTGAAACAACCT 59.711 41.667 0.00 0.00 0.00 3.50
695 696 4.395231 GTGCTATTACCTCCTGAAACAACC 59.605 45.833 0.00 0.00 0.00 3.77
696 697 4.395231 GGTGCTATTACCTCCTGAAACAAC 59.605 45.833 0.00 0.00 37.74 3.32
697 698 4.566907 GGGTGCTATTACCTCCTGAAACAA 60.567 45.833 0.00 0.00 40.66 2.83
698 699 3.054655 GGGTGCTATTACCTCCTGAAACA 60.055 47.826 0.00 0.00 40.66 2.83
699 700 3.542648 GGGTGCTATTACCTCCTGAAAC 58.457 50.000 0.00 0.00 40.66 2.78
700 701 2.508300 GGGGTGCTATTACCTCCTGAAA 59.492 50.000 0.00 0.00 40.66 2.69
701 702 2.124411 GGGGTGCTATTACCTCCTGAA 58.876 52.381 0.00 0.00 40.66 3.02
702 703 1.009060 TGGGGTGCTATTACCTCCTGA 59.991 52.381 0.00 0.00 40.68 3.86
703 704 1.417890 CTGGGGTGCTATTACCTCCTG 59.582 57.143 0.00 0.00 40.68 3.86
724 725 3.055385 ACATCGTGTGCAAGTTAGGGTAT 60.055 43.478 0.00 0.00 0.00 2.73
803 804 3.817647 GCCTGGGACTAAATCATCACATC 59.182 47.826 0.00 0.00 0.00 3.06
865 867 3.506312 AAAAGTGTGCGCGCTGACG 62.506 57.895 33.29 0.00 44.07 4.35
876 878 1.065782 GGGGGTTTTGTGCAAAAGTGT 60.066 47.619 9.98 0.00 40.53 3.55
916 918 2.031870 TCAGGTGTGCTATACTGCGAT 58.968 47.619 0.00 0.00 35.36 4.58
917 919 1.470051 TCAGGTGTGCTATACTGCGA 58.530 50.000 0.00 0.00 35.36 5.10
1785 3508 2.049433 AGGAACTTCGCGGTCACG 60.049 61.111 6.13 0.00 38.60 4.35
2342 4463 2.259281 CATGCATGCACCAGTCACA 58.741 52.632 25.37 0.00 0.00 3.58
2653 4780 0.322816 TTTGGCTCTCCTGCACCATC 60.323 55.000 0.00 0.00 34.04 3.51
2654 4781 0.610232 GTTTGGCTCTCCTGCACCAT 60.610 55.000 0.00 0.00 34.04 3.55
2655 4782 1.228245 GTTTGGCTCTCCTGCACCA 60.228 57.895 0.00 0.00 34.04 4.17
3128 5600 0.959372 AACGGACGGACGAGATGAGT 60.959 55.000 8.01 0.00 37.61 3.41
3136 5608 1.657094 CCTTTTATCAACGGACGGACG 59.343 52.381 0.00 0.00 40.31 4.79
3395 5878 2.126467 CAAATTCTTGTGTTGTGGGCG 58.874 47.619 0.00 0.00 0.00 6.13
3443 5926 4.082463 TCTCCAAAATACGGCCAAATTGAC 60.082 41.667 2.24 0.00 0.00 3.18
3503 5986 3.703127 AAAGGTCTCCCCGCGGAC 61.703 66.667 30.73 17.23 38.74 4.79
3504 5987 3.702048 CAAAGGTCTCCCCGCGGA 61.702 66.667 30.73 6.52 38.74 5.54
3605 6354 6.933521 GCTTCCATGTCATCAATCTGTATACT 59.066 38.462 4.17 0.00 0.00 2.12
3701 6450 2.286872 CAGATGTTGAGCCATCTCCAC 58.713 52.381 0.84 0.00 46.70 4.02
3702 6451 1.911357 ACAGATGTTGAGCCATCTCCA 59.089 47.619 0.84 0.00 46.70 3.86
3842 6591 0.608640 ACCTCCTTAAGCCTGTCACG 59.391 55.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.