Multiple sequence alignment - TraesCS2D01G507200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G507200 chr2D 100.000 7096 0 0 1 7096 600981997 600974902 0.000000e+00 13104
1 TraesCS2D01G507200 chr2D 97.000 200 3 1 4892 5091 565656069 565656265 4.100000e-87 333
2 TraesCS2D01G507200 chr2B 90.571 3818 221 62 1138 4898 731004631 731000896 0.000000e+00 4927
3 TraesCS2D01G507200 chr2B 92.692 1122 58 12 5087 6202 731000903 730999800 0.000000e+00 1596
4 TraesCS2D01G507200 chr2B 83.412 850 95 30 262 1073 731018968 731018127 0.000000e+00 747
5 TraesCS2D01G507200 chr2B 86.176 680 57 15 6423 7096 730998683 730998035 0.000000e+00 701
6 TraesCS2D01G507200 chr2B 82.034 590 83 11 1 571 731006071 731005486 1.380000e-131 481
7 TraesCS2D01G507200 chr2B 82.857 315 29 12 613 905 731005473 731005162 7.060000e-65 259
8 TraesCS2D01G507200 chr2B 90.698 129 6 4 3341 3468 166470772 166470895 4.400000e-37 167
9 TraesCS2D01G507200 chr2B 89.922 129 7 3 3341 3468 288943596 288943719 2.050000e-35 161
10 TraesCS2D01G507200 chr2B 85.161 155 8 6 944 1097 731004764 731004624 2.060000e-30 145
11 TraesCS2D01G507200 chr2A 89.898 2752 160 58 901 3595 734352383 734349693 0.000000e+00 3434
12 TraesCS2D01G507200 chr2A 98.580 1268 18 0 3631 4898 734349692 734348425 0.000000e+00 2242
13 TraesCS2D01G507200 chr2A 94.847 1339 52 7 5087 6418 734348432 734347104 0.000000e+00 2074
14 TraesCS2D01G507200 chr2A 94.100 678 26 8 6423 7096 734346766 734346099 0.000000e+00 1018
15 TraesCS2D01G507200 chr2A 85.981 428 48 8 1 418 734353498 734353073 1.400000e-121 448
16 TraesCS2D01G507200 chr2A 89.844 128 6 4 3341 3467 586454802 586454923 2.650000e-34 158
17 TraesCS2D01G507200 chr2A 85.294 136 15 5 478 609 734353055 734352921 1.240000e-27 135
18 TraesCS2D01G507200 chr5B 94.811 212 6 3 4881 5091 508165175 508164968 6.860000e-85 326
19 TraesCS2D01G507200 chr5B 90.000 130 6 4 3341 3468 170586051 170586175 2.050000e-35 161
20 TraesCS2D01G507200 chr3B 94.009 217 8 3 4898 5113 23958436 23958224 2.470000e-84 324
21 TraesCS2D01G507200 chrUn 94.340 212 7 3 4881 5091 235812593 235812386 3.190000e-83 320
22 TraesCS2D01G507200 chrUn 94.340 212 7 3 4881 5091 382475382 382475589 3.190000e-83 320
23 TraesCS2D01G507200 chr6D 96.891 193 3 1 4899 5091 291261939 291261750 3.190000e-83 320
24 TraesCS2D01G507200 chr6D 90.698 129 6 3 3341 3468 365847010 365846887 4.400000e-37 167
25 TraesCS2D01G507200 chr4D 94.340 212 7 3 4881 5091 120795279 120795486 3.190000e-83 320
26 TraesCS2D01G507200 chr4D 94.340 212 7 3 4881 5091 439899006 439898799 3.190000e-83 320
27 TraesCS2D01G507200 chr1B 94.340 212 7 3 4881 5091 164197012 164196805 3.190000e-83 320
28 TraesCS2D01G507200 chr6A 90.698 129 6 3 3341 3468 506642955 506642832 4.400000e-37 167
29 TraesCS2D01G507200 chr3A 89.844 128 7 3 3342 3468 466795848 466795726 7.370000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G507200 chr2D 600974902 600981997 7095 True 13104.0 13104 100.000000 1 7096 1 chr2D.!!$R1 7095
1 TraesCS2D01G507200 chr2B 730998035 731006071 8036 True 1351.5 4927 86.581833 1 7096 6 chr2B.!!$R2 7095
2 TraesCS2D01G507200 chr2B 731018127 731018968 841 True 747.0 747 83.412000 262 1073 1 chr2B.!!$R1 811
3 TraesCS2D01G507200 chr2A 734346099 734353498 7399 True 1558.5 3434 91.450000 1 7096 6 chr2A.!!$R1 7095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 502 0.179250 CACGTCAATGGAGCGAAACG 60.179 55.000 0.00 0.00 36.29 3.60 F
1053 1653 0.034089 CCTCCGGCTTCCTCCAATTT 60.034 55.000 0.00 0.00 0.00 1.82 F
1443 2056 0.181587 TTGTTCCTGTCCCGCTTTCA 59.818 50.000 0.00 0.00 0.00 2.69 F
1905 2549 0.033090 GTAATCTTACGGCCGGGGAG 59.967 60.000 31.76 22.57 0.00 4.30 F
2120 2773 0.693049 AGAAACATGGGAGAAGGCGT 59.307 50.000 0.00 0.00 0.00 5.68 F
2666 3341 0.951558 ACGTGCCACTTGGAATCAAC 59.048 50.000 0.00 0.00 37.39 3.18 F
3628 4321 2.035704 TGTGAATGTGGTGATTGCAACC 59.964 45.455 0.00 0.00 0.00 3.77 F
4933 5627 0.725117 GCTAGGCGTTAATTGTGCGT 59.275 50.000 0.00 0.00 0.00 5.24 F
5039 5733 0.109735 GTTTTGCCAACGCCTAGAGC 60.110 55.000 0.00 0.00 38.52 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1560 2175 0.034198 TTTCAGAATCCGCACCGACA 59.966 50.000 0.00 0.00 0.00 4.35 R
1901 2545 0.112412 TCTTGGGCAAAGTTCCTCCC 59.888 55.000 0.67 0.00 37.18 4.30 R
2328 2981 0.253044 AACATGTCAGGGGATGTCCG 59.747 55.000 0.00 0.00 36.71 4.79 R
3615 4308 0.469705 AGGCTTGGTTGCAATCACCA 60.470 50.000 13.08 8.47 34.04 4.17 R
4033 4727 1.522580 GCTGGAGGGCTCGACATTC 60.523 63.158 0.00 0.00 0.00 2.67 R
4169 4863 5.865085 TGTCACAGGTTAGCATAGAGTTTT 58.135 37.500 0.00 0.00 0.00 2.43 R
5020 5714 0.109735 GCTCTAGGCGTTGGCAAAAC 60.110 55.000 0.00 0.00 42.47 2.43 R
6026 6732 0.094730 GCACGACAGCCACGATTTAC 59.905 55.000 0.00 0.00 34.70 2.01 R
6202 6908 0.249911 ACAGGAAGACGCAACCAGAC 60.250 55.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.095919 GGACGCATATAAATGAACCCGC 60.096 50.000 0.00 0.00 34.84 6.13
32 33 1.265635 GCATATAAATGAACCCGCGCA 59.734 47.619 8.75 0.00 34.84 6.09
39 40 1.447317 ATGAACCCGCGCAATGGATC 61.447 55.000 8.75 9.49 0.00 3.36
64 65 8.914654 TCGAAATTATTTCAAAATGTTGCTCAG 58.085 29.630 16.57 0.00 39.63 3.35
65 66 8.914654 CGAAATTATTTCAAAATGTTGCTCAGA 58.085 29.630 16.57 0.00 39.63 3.27
79 87 5.874810 TGTTGCTCAGACATATAAGGTCAAC 59.125 40.000 9.70 0.00 37.74 3.18
88 96 8.186163 CAGACATATAAGGTCAACGTTGTAGTA 58.814 37.037 26.47 15.02 37.74 1.82
105 113 6.563398 TGTAGTAGTGTTTGATAAATCGCG 57.437 37.500 0.00 0.00 0.00 5.87
137 145 7.001073 AGGTCATCTCAAAGCTTTTACTCTTT 58.999 34.615 9.53 0.00 33.20 2.52
138 146 7.040823 AGGTCATCTCAAAGCTTTTACTCTTTG 60.041 37.037 9.53 8.04 46.27 2.77
174 193 4.802051 TCGTCTCCCCCGGGTACG 62.802 72.222 21.85 21.95 42.49 3.67
216 235 3.490249 CGTCGGTATATGTGAGGAAAGCA 60.490 47.826 0.00 0.00 0.00 3.91
238 257 4.344865 GGAGGAGTTGGCGGCCAA 62.345 66.667 29.66 29.66 41.69 4.52
313 335 0.534412 AGGAAGTGGCAGACTCATCG 59.466 55.000 0.00 0.00 31.73 3.84
316 338 0.969149 AAGTGGCAGACTCATCGACA 59.031 50.000 0.00 0.00 31.73 4.35
332 356 1.202417 CGACACGCTATGAGGTGGATT 60.202 52.381 0.00 0.00 38.46 3.01
348 372 2.094675 GGATTGTGTGGGTGATTCTGG 58.905 52.381 0.00 0.00 0.00 3.86
362 386 5.243283 GGTGATTCTGGTATACGGTCAGTAT 59.757 44.000 7.29 1.19 46.90 2.12
370 394 4.684703 GGTATACGGTCAGTATCACAATGC 59.315 45.833 0.00 0.00 44.41 3.56
376 400 3.489738 GGTCAGTATCACAATGCCAATGC 60.490 47.826 0.00 0.00 38.26 3.56
390 416 2.226200 GCCAATGCAATGGTCAAAAACC 59.774 45.455 21.75 0.00 42.75 3.27
418 444 2.260869 GCAACAAGGCGCCAAGAGA 61.261 57.895 31.54 0.00 0.00 3.10
421 447 3.121030 CAAGGCGCCAAGAGACCG 61.121 66.667 31.54 2.97 0.00 4.79
422 448 3.311110 AAGGCGCCAAGAGACCGA 61.311 61.111 31.54 0.00 0.00 4.69
452 478 3.285484 AGGGTGCTATCATGCAAAAGAG 58.715 45.455 0.00 0.00 45.12 2.85
457 483 3.371898 TGCTATCATGCAAAAGAGACACG 59.628 43.478 0.00 0.00 40.29 4.49
462 488 3.814842 TCATGCAAAAGAGACACGTCAAT 59.185 39.130 0.00 0.00 0.00 2.57
463 489 3.607422 TGCAAAAGAGACACGTCAATG 57.393 42.857 0.00 0.00 0.00 2.82
472 501 0.865769 ACACGTCAATGGAGCGAAAC 59.134 50.000 0.00 0.00 0.00 2.78
473 502 0.179250 CACGTCAATGGAGCGAAACG 60.179 55.000 0.00 0.00 36.29 3.60
474 503 1.289109 ACGTCAATGGAGCGAAACGG 61.289 55.000 0.00 0.00 34.63 4.44
540 569 5.827797 GGCATGGATAAGAAGAACCATACAA 59.172 40.000 0.00 0.00 40.55 2.41
541 570 6.238759 GGCATGGATAAGAAGAACCATACAAC 60.239 42.308 0.00 0.00 40.55 3.32
544 576 7.016153 TGGATAAGAAGAACCATACAACAGT 57.984 36.000 0.00 0.00 0.00 3.55
624 807 5.702209 GGACTTAGTCTCTTAGATACCCGAG 59.298 48.000 12.41 0.00 32.47 4.63
641 824 4.021719 ACCCGAGAAATCTTCGAAGTTACA 60.022 41.667 23.85 5.89 34.02 2.41
643 826 5.232414 CCCGAGAAATCTTCGAAGTTACATC 59.768 44.000 23.85 15.92 34.02 3.06
647 830 8.436200 CGAGAAATCTTCGAAGTTACATCTTTT 58.564 33.333 23.85 11.64 34.02 2.27
648 831 9.748100 GAGAAATCTTCGAAGTTACATCTTTTC 57.252 33.333 23.85 17.60 34.02 2.29
649 832 8.436200 AGAAATCTTCGAAGTTACATCTTTTCG 58.564 33.333 23.85 0.00 42.61 3.46
651 834 5.775686 TCTTCGAAGTTACATCTTTTCGGA 58.224 37.500 23.85 0.00 41.82 4.55
654 837 7.386848 TCTTCGAAGTTACATCTTTTCGGAAAT 59.613 33.333 23.85 0.00 41.82 2.17
655 838 7.057149 TCGAAGTTACATCTTTTCGGAAATC 57.943 36.000 3.67 0.00 41.82 2.17
709 914 7.968405 CAGTTAAACATCAAATTACTGCCTACC 59.032 37.037 0.00 0.00 0.00 3.18
715 920 5.630415 TCAAATTACTGCCTACCAGCTAT 57.370 39.130 0.00 0.00 45.78 2.97
717 922 6.055588 TCAAATTACTGCCTACCAGCTATTC 58.944 40.000 0.00 0.00 45.78 1.75
742 947 9.173021 TCACTACCAAAAATAGGACACATATTG 57.827 33.333 0.00 0.00 0.00 1.90
777 987 9.585099 TTTGAGTTGGCACATATTTATTCATTC 57.415 29.630 0.00 0.00 39.30 2.67
782 992 7.275888 TGGCACATATTTATTCATTCACTCC 57.724 36.000 0.00 0.00 0.00 3.85
810 1020 2.134789 ATCCATGGCAGGTTGTCTTC 57.865 50.000 6.96 0.00 0.00 2.87
847 1072 8.709386 ATTCATTGCTACTGTAGAACTACTTG 57.291 34.615 18.64 5.74 37.00 3.16
892 1117 2.965147 ACTGCCAAGTGCCAAAGTATTT 59.035 40.909 0.00 0.00 40.16 1.40
898 1123 5.408299 GCCAAGTGCCAAAGTATTTTAAAGG 59.592 40.000 0.00 0.00 35.03 3.11
1023 1623 2.926242 TCCGCCGGTCCCTCTTTT 60.926 61.111 1.63 0.00 0.00 2.27
1024 1624 1.610086 TCCGCCGGTCCCTCTTTTA 60.610 57.895 1.63 0.00 0.00 1.52
1025 1625 0.979187 TCCGCCGGTCCCTCTTTTAT 60.979 55.000 1.63 0.00 0.00 1.40
1027 1627 0.464452 CGCCGGTCCCTCTTTTATCT 59.536 55.000 1.90 0.00 0.00 1.98
1029 1629 1.485066 GCCGGTCCCTCTTTTATCTCA 59.515 52.381 1.90 0.00 0.00 3.27
1030 1630 2.483889 GCCGGTCCCTCTTTTATCTCAG 60.484 54.545 1.90 0.00 0.00 3.35
1039 1639 0.837272 TTTTATCTCAGCCCCCTCCG 59.163 55.000 0.00 0.00 0.00 4.63
1053 1653 0.034089 CCTCCGGCTTCCTCCAATTT 60.034 55.000 0.00 0.00 0.00 1.82
1061 1661 3.429410 GGCTTCCTCCAATTTTCATTCCG 60.429 47.826 0.00 0.00 0.00 4.30
1063 1663 4.082245 GCTTCCTCCAATTTTCATTCCGAA 60.082 41.667 0.00 0.00 0.00 4.30
1093 1693 1.874129 ACGAGAGAGAGGGAGAGAGA 58.126 55.000 0.00 0.00 0.00 3.10
1105 1705 2.092103 GGGAGAGAGAGAGGAGCAGTTA 60.092 54.545 0.00 0.00 0.00 2.24
1224 1827 3.082701 AGGAGCAGGAGCAGGAGC 61.083 66.667 0.00 0.00 45.49 4.70
1225 1828 3.397439 GGAGCAGGAGCAGGAGCA 61.397 66.667 0.00 0.00 45.49 4.26
1227 1830 2.926779 AGCAGGAGCAGGAGCACA 60.927 61.111 0.00 0.00 45.49 4.57
1229 1832 2.039405 GCAGGAGCAGGAGCACAAG 61.039 63.158 0.00 0.00 45.49 3.16
1230 1833 1.376942 CAGGAGCAGGAGCACAAGG 60.377 63.158 0.00 0.00 45.49 3.61
1231 1834 1.537397 AGGAGCAGGAGCACAAGGA 60.537 57.895 0.00 0.00 45.49 3.36
1232 1835 1.078567 GGAGCAGGAGCACAAGGAG 60.079 63.158 0.00 0.00 45.49 3.69
1233 1836 1.744741 GAGCAGGAGCACAAGGAGC 60.745 63.158 0.00 0.00 45.49 4.70
1234 1837 2.033141 GCAGGAGCACAAGGAGCA 59.967 61.111 0.00 0.00 41.58 4.26
1235 1838 2.039405 GCAGGAGCACAAGGAGCAG 61.039 63.158 0.00 0.00 41.58 4.24
1236 1839 1.376942 CAGGAGCACAAGGAGCAGG 60.377 63.158 0.00 0.00 0.00 4.85
1237 1840 1.537397 AGGAGCACAAGGAGCAGGA 60.537 57.895 0.00 0.00 0.00 3.86
1238 1841 1.078567 GGAGCACAAGGAGCAGGAG 60.079 63.158 0.00 0.00 0.00 3.69
1249 1852 4.792804 GCAGGAGACCCAGCAGCC 62.793 72.222 0.00 0.00 43.64 4.85
1386 1996 1.729881 GTGATTCTGCCGGATTGCC 59.270 57.895 5.05 0.00 0.00 4.52
1422 2034 3.625764 CGGGTGTTCTTCTTGTTCTTGAA 59.374 43.478 0.00 0.00 0.00 2.69
1423 2035 4.260784 CGGGTGTTCTTCTTGTTCTTGAAG 60.261 45.833 0.00 0.00 40.53 3.02
1424 2036 4.640647 GGGTGTTCTTCTTGTTCTTGAAGT 59.359 41.667 0.00 0.00 40.20 3.01
1432 2045 5.818136 TCTTGTTCTTGAAGTTGTTCCTG 57.182 39.130 0.00 0.00 0.00 3.86
1443 2056 0.181587 TTGTTCCTGTCCCGCTTTCA 59.818 50.000 0.00 0.00 0.00 2.69
1453 2066 1.695242 TCCCGCTTTCACCTGTTCTTA 59.305 47.619 0.00 0.00 0.00 2.10
1478 2093 2.125952 GCTTTCGCATTGGCACCC 60.126 61.111 0.00 0.00 41.24 4.61
1481 2096 4.652131 TTCGCATTGGCACCCCGT 62.652 61.111 0.00 0.00 41.24 5.28
1560 2175 3.379445 CGTGGGGAGTGCGTAGGT 61.379 66.667 0.00 0.00 0.00 3.08
1577 2192 1.080093 GTGTCGGTGCGGATTCTGA 60.080 57.895 0.00 0.00 0.00 3.27
1623 2248 3.879998 TGCTGTTCAAGTGTTGTTCCTA 58.120 40.909 0.00 0.00 0.00 2.94
1624 2249 4.460263 TGCTGTTCAAGTGTTGTTCCTAT 58.540 39.130 0.00 0.00 0.00 2.57
1625 2250 4.515191 TGCTGTTCAAGTGTTGTTCCTATC 59.485 41.667 0.00 0.00 0.00 2.08
1681 2306 2.091885 AGTTTCCTGAACCTTTGCCTGA 60.092 45.455 0.00 0.00 39.13 3.86
1695 2320 6.151817 ACCTTTGCCTGATGTTAAGAAATCTC 59.848 38.462 0.00 0.00 0.00 2.75
1696 2321 6.151648 CCTTTGCCTGATGTTAAGAAATCTCA 59.848 38.462 0.00 0.00 0.00 3.27
1713 2351 8.398743 AGAAATCTCAAGTTAGGGGGAATTTTA 58.601 33.333 0.00 0.00 0.00 1.52
1735 2373 1.523032 GGCCGTGTTCTTATCCGGG 60.523 63.158 0.00 0.00 40.74 5.73
1778 2416 1.737793 CTGGAAATCTGGCGTTACCAC 59.262 52.381 0.00 0.00 46.36 4.16
1821 2465 7.603404 TCATGGTTGATTTAATGGCAAGAAAAG 59.397 33.333 0.00 0.00 0.00 2.27
1822 2466 5.700373 TGGTTGATTTAATGGCAAGAAAAGC 59.300 36.000 0.00 0.00 0.00 3.51
1823 2467 5.163963 GGTTGATTTAATGGCAAGAAAAGCG 60.164 40.000 0.00 0.00 0.00 4.68
1824 2468 3.925913 TGATTTAATGGCAAGAAAAGCGC 59.074 39.130 0.00 0.00 0.00 5.92
1825 2469 3.377346 TTTAATGGCAAGAAAAGCGCA 57.623 38.095 11.47 0.00 0.00 6.09
1883 2527 9.140286 GGCAAATCTTTTCTTATCAAGTTAACC 57.860 33.333 0.88 0.00 0.00 2.85
1899 2543 5.181009 AGTTAACCAAGTAATCTTACGGCC 58.819 41.667 0.88 0.00 38.65 6.13
1901 2545 1.134610 ACCAAGTAATCTTACGGCCGG 60.135 52.381 31.76 12.37 38.65 6.13
1905 2549 0.033090 GTAATCTTACGGCCGGGGAG 59.967 60.000 31.76 22.57 0.00 4.30
2019 2664 5.767816 AAGTTTTTAGTTCAACCGCTGAT 57.232 34.783 0.00 0.00 32.78 2.90
2021 2666 5.758924 AGTTTTTAGTTCAACCGCTGATTC 58.241 37.500 0.00 0.00 32.78 2.52
2060 2707 2.872858 CTCTTTAGGCCGCTTACATTCC 59.127 50.000 0.00 0.00 0.00 3.01
2119 2772 1.339055 TGAGAAACATGGGAGAAGGCG 60.339 52.381 0.00 0.00 0.00 5.52
2120 2773 0.693049 AGAAACATGGGAGAAGGCGT 59.307 50.000 0.00 0.00 0.00 5.68
2121 2774 1.906574 AGAAACATGGGAGAAGGCGTA 59.093 47.619 0.00 0.00 0.00 4.42
2122 2775 2.505819 AGAAACATGGGAGAAGGCGTAT 59.494 45.455 0.00 0.00 0.00 3.06
2328 2981 6.694411 TCACAACGTTGAACTACTAGTCTTTC 59.306 38.462 33.66 3.99 0.00 2.62
2336 2989 5.125097 TGAACTACTAGTCTTTCGGACATCC 59.875 44.000 0.00 0.00 46.72 3.51
2460 3120 1.009675 GGCATATTTGTCGGCTGCG 60.010 57.895 0.00 0.00 33.69 5.18
2488 3148 2.419673 TGCATTGTTCAGCTATTCACCG 59.580 45.455 0.00 0.00 0.00 4.94
2492 3152 5.559035 GCATTGTTCAGCTATTCACCGTATC 60.559 44.000 0.00 0.00 0.00 2.24
2515 3175 3.006659 TGCCACGTTAATTTGTTCTGC 57.993 42.857 0.00 0.00 0.00 4.26
2565 3228 8.050778 TGTAAGGTTTGGCTAATGTCTATTTG 57.949 34.615 0.00 0.00 0.00 2.32
2567 3230 7.539034 AAGGTTTGGCTAATGTCTATTTGTT 57.461 32.000 0.00 0.00 0.00 2.83
2603 3278 6.040209 TCAATTAATTGGCTGCTGTGAAAT 57.960 33.333 24.40 0.00 38.30 2.17
2625 3300 5.296151 TGATGGATCCTGTATTGGAGTTC 57.704 43.478 14.23 0.00 39.78 3.01
2666 3341 0.951558 ACGTGCCACTTGGAATCAAC 59.048 50.000 0.00 0.00 37.39 3.18
2758 3434 4.429108 ACAACGGTTGGAGAAAACAATTG 58.571 39.130 23.51 3.24 34.79 2.32
2765 3441 5.507985 GGTTGGAGAAAACAATTGAGTCCAG 60.508 44.000 13.59 0.00 34.20 3.86
2790 3466 6.263168 GCACATATAATTTGCTAGGTCCAGTT 59.737 38.462 0.00 0.00 33.26 3.16
2924 3605 4.503910 TGAATAATTCAGAGTGGACCACG 58.496 43.478 18.93 5.33 35.55 4.94
3104 3785 2.545113 CGGGGTATCATACAAGTCGTGG 60.545 54.545 0.00 0.00 0.00 4.94
3345 4026 3.949754 AGTGCACAATTCTATGTCATGGG 59.050 43.478 21.04 0.00 0.00 4.00
3377 4058 5.739358 GCGTGGAAGTTAGTTAGCTATCCAT 60.739 44.000 12.02 0.00 0.00 3.41
3615 4308 2.229784 GCTTTTGCTAGCCTGTGAATGT 59.770 45.455 13.29 0.00 43.35 2.71
3628 4321 2.035704 TGTGAATGTGGTGATTGCAACC 59.964 45.455 0.00 0.00 0.00 3.77
4033 4727 6.377327 AATTATTAGGTCTGGAATGTTGCG 57.623 37.500 0.00 0.00 0.00 4.85
4266 4960 1.070445 CCTCAAAAAGCAATGGCACCA 59.930 47.619 0.00 0.00 44.61 4.17
4890 5584 9.793252 AATCTGCATGATTCTGTTAAAATGTAC 57.207 29.630 0.00 0.00 41.17 2.90
4891 5585 8.565896 TCTGCATGATTCTGTTAAAATGTACT 57.434 30.769 0.00 0.00 0.00 2.73
4892 5586 9.013229 TCTGCATGATTCTGTTAAAATGTACTT 57.987 29.630 0.00 0.00 0.00 2.24
4893 5587 8.969121 TGCATGATTCTGTTAAAATGTACTTG 57.031 30.769 0.00 0.00 0.00 3.16
4894 5588 7.541783 TGCATGATTCTGTTAAAATGTACTTGC 59.458 33.333 0.00 0.00 0.00 4.01
4895 5589 7.541783 GCATGATTCTGTTAAAATGTACTTGCA 59.458 33.333 0.00 0.00 0.00 4.08
4896 5590 9.409312 CATGATTCTGTTAAAATGTACTTGCAA 57.591 29.630 0.00 0.00 0.00 4.08
4897 5591 9.630098 ATGATTCTGTTAAAATGTACTTGCAAG 57.370 29.630 24.84 24.84 0.00 4.01
4898 5592 7.594758 TGATTCTGTTAAAATGTACTTGCAAGC 59.405 33.333 26.27 11.58 0.00 4.01
4899 5593 6.384258 TCTGTTAAAATGTACTTGCAAGCA 57.616 33.333 26.27 17.00 0.00 3.91
4900 5594 6.980593 TCTGTTAAAATGTACTTGCAAGCAT 58.019 32.000 26.27 18.47 0.00 3.79
4901 5595 8.105097 TCTGTTAAAATGTACTTGCAAGCATA 57.895 30.769 26.27 12.69 0.00 3.14
4902 5596 8.236586 TCTGTTAAAATGTACTTGCAAGCATAG 58.763 33.333 26.27 13.99 0.00 2.23
4903 5597 7.881142 TGTTAAAATGTACTTGCAAGCATAGT 58.119 30.769 26.27 8.55 0.00 2.12
4904 5598 8.356657 TGTTAAAATGTACTTGCAAGCATAGTT 58.643 29.630 26.27 14.42 0.00 2.24
4905 5599 8.850452 GTTAAAATGTACTTGCAAGCATAGTTC 58.150 33.333 26.27 5.78 0.00 3.01
4906 5600 6.573664 AAATGTACTTGCAAGCATAGTTCA 57.426 33.333 26.27 11.48 0.00 3.18
4907 5601 6.573664 AATGTACTTGCAAGCATAGTTCAA 57.426 33.333 26.27 2.60 0.00 2.69
4908 5602 6.573664 ATGTACTTGCAAGCATAGTTCAAA 57.426 33.333 26.27 1.15 0.00 2.69
4909 5603 6.384258 TGTACTTGCAAGCATAGTTCAAAA 57.616 33.333 26.27 0.00 0.00 2.44
4910 5604 6.800543 TGTACTTGCAAGCATAGTTCAAAAA 58.199 32.000 26.27 0.00 0.00 1.94
4932 5626 3.509266 GCTAGGCGTTAATTGTGCG 57.491 52.632 0.00 0.00 0.00 5.34
4933 5627 0.725117 GCTAGGCGTTAATTGTGCGT 59.275 50.000 0.00 0.00 0.00 5.24
4934 5628 1.129811 GCTAGGCGTTAATTGTGCGTT 59.870 47.619 0.00 0.00 0.00 4.84
4935 5629 2.413634 GCTAGGCGTTAATTGTGCGTTT 60.414 45.455 0.00 0.00 0.00 3.60
4936 5630 2.785713 AGGCGTTAATTGTGCGTTTT 57.214 40.000 0.00 0.00 0.00 2.43
4937 5631 2.389998 AGGCGTTAATTGTGCGTTTTG 58.610 42.857 0.00 0.00 0.00 2.44
4938 5632 1.136748 GGCGTTAATTGTGCGTTTTGC 60.137 47.619 0.00 0.00 46.70 3.68
4939 5633 1.136748 GCGTTAATTGTGCGTTTTGCC 60.137 47.619 0.00 0.00 45.60 4.52
4940 5634 2.120232 CGTTAATTGTGCGTTTTGCCA 58.880 42.857 0.00 0.00 45.60 4.92
4941 5635 2.097637 CGTTAATTGTGCGTTTTGCCAC 60.098 45.455 0.00 0.00 45.60 5.01
4942 5636 2.141535 TAATTGTGCGTTTTGCCACC 57.858 45.000 0.00 0.00 45.60 4.61
4943 5637 0.873743 AATTGTGCGTTTTGCCACCG 60.874 50.000 0.00 0.00 45.60 4.94
4944 5638 4.560856 TGTGCGTTTTGCCACCGC 62.561 61.111 0.00 0.00 45.60 5.68
4947 5641 4.279043 GCGTTTTGCCACCGCCTT 62.279 61.111 0.00 0.00 41.50 4.35
4948 5642 2.354539 CGTTTTGCCACCGCCTTG 60.355 61.111 0.00 0.00 0.00 3.61
4949 5643 2.661537 GTTTTGCCACCGCCTTGC 60.662 61.111 0.00 0.00 0.00 4.01
4961 5655 3.611433 GCCTTGCGCTTTACTGATG 57.389 52.632 9.73 0.00 0.00 3.07
4962 5656 1.086696 GCCTTGCGCTTTACTGATGA 58.913 50.000 9.73 0.00 0.00 2.92
4963 5657 1.202076 GCCTTGCGCTTTACTGATGAC 60.202 52.381 9.73 0.00 0.00 3.06
4964 5658 1.398390 CCTTGCGCTTTACTGATGACC 59.602 52.381 9.73 0.00 0.00 4.02
4965 5659 2.076100 CTTGCGCTTTACTGATGACCA 58.924 47.619 9.73 0.00 0.00 4.02
4966 5660 2.177394 TGCGCTTTACTGATGACCAA 57.823 45.000 9.73 0.00 0.00 3.67
4967 5661 2.499197 TGCGCTTTACTGATGACCAAA 58.501 42.857 9.73 0.00 0.00 3.28
4968 5662 2.483877 TGCGCTTTACTGATGACCAAAG 59.516 45.455 9.73 0.00 0.00 2.77
4969 5663 2.484264 GCGCTTTACTGATGACCAAAGT 59.516 45.455 0.00 0.00 31.95 2.66
4970 5664 3.667960 GCGCTTTACTGATGACCAAAGTG 60.668 47.826 0.00 0.00 40.03 3.16
4971 5665 3.667960 CGCTTTACTGATGACCAAAGTGC 60.668 47.826 0.00 0.00 33.34 4.40
4972 5666 3.253188 GCTTTACTGATGACCAAAGTGCA 59.747 43.478 0.00 0.00 31.95 4.57
4973 5667 4.082571 GCTTTACTGATGACCAAAGTGCAT 60.083 41.667 0.00 0.00 31.95 3.96
4974 5668 5.375417 TTTACTGATGACCAAAGTGCATG 57.625 39.130 0.00 0.00 0.00 4.06
4975 5669 1.542915 ACTGATGACCAAAGTGCATGC 59.457 47.619 11.82 11.82 0.00 4.06
4976 5670 1.816835 CTGATGACCAAAGTGCATGCT 59.183 47.619 20.33 0.00 0.00 3.79
4977 5671 2.230508 CTGATGACCAAAGTGCATGCTT 59.769 45.455 20.33 2.28 0.00 3.91
4978 5672 3.419943 TGATGACCAAAGTGCATGCTTA 58.580 40.909 20.33 0.00 0.00 3.09
4979 5673 4.018490 TGATGACCAAAGTGCATGCTTAT 58.982 39.130 20.33 1.26 0.00 1.73
4980 5674 3.853831 TGACCAAAGTGCATGCTTATG 57.146 42.857 20.33 12.11 0.00 1.90
4989 5683 2.693797 GCATGCTTATGCGCAGTTAT 57.306 45.000 18.32 0.10 44.10 1.89
4990 5684 2.313234 GCATGCTTATGCGCAGTTATG 58.687 47.619 18.32 15.92 44.10 1.90
5004 5698 4.864916 CAGTTATGCACAGATTAAGCGT 57.135 40.909 0.00 0.00 0.00 5.07
5005 5699 5.966636 CAGTTATGCACAGATTAAGCGTA 57.033 39.130 0.00 0.00 0.00 4.42
5006 5700 5.967469 CAGTTATGCACAGATTAAGCGTAG 58.033 41.667 0.00 0.00 32.03 3.51
5007 5701 5.520288 CAGTTATGCACAGATTAAGCGTAGT 59.480 40.000 0.00 0.00 32.03 2.73
5008 5702 6.036083 CAGTTATGCACAGATTAAGCGTAGTT 59.964 38.462 0.00 0.00 32.03 2.24
5009 5703 7.222031 CAGTTATGCACAGATTAAGCGTAGTTA 59.778 37.037 0.00 0.00 32.03 2.24
5010 5704 7.926555 AGTTATGCACAGATTAAGCGTAGTTAT 59.073 33.333 0.00 0.00 32.03 1.89
5011 5705 5.966636 TGCACAGATTAAGCGTAGTTATG 57.033 39.130 0.00 0.00 0.00 1.90
5012 5706 4.270084 TGCACAGATTAAGCGTAGTTATGC 59.730 41.667 0.00 0.00 38.47 3.14
5013 5707 4.606232 GCACAGATTAAGCGTAGTTATGCG 60.606 45.833 0.00 0.00 42.84 4.73
5031 5725 1.201332 GCAATGCGTTTTGCCAACG 59.799 52.632 12.66 12.66 44.94 4.10
5036 5730 4.838959 CGTTTTGCCAACGCCTAG 57.161 55.556 5.44 0.00 36.82 3.02
5037 5731 2.240230 CGTTTTGCCAACGCCTAGA 58.760 52.632 5.44 0.00 36.82 2.43
5038 5732 0.165944 CGTTTTGCCAACGCCTAGAG 59.834 55.000 5.44 0.00 36.82 2.43
5039 5733 0.109735 GTTTTGCCAACGCCTAGAGC 60.110 55.000 0.00 0.00 38.52 4.09
5040 5734 1.241315 TTTTGCCAACGCCTAGAGCC 61.241 55.000 0.00 0.00 38.78 4.70
5041 5735 2.124507 TTTGCCAACGCCTAGAGCCT 62.125 55.000 0.00 0.00 38.78 4.58
5042 5736 1.261938 TTGCCAACGCCTAGAGCCTA 61.262 55.000 0.00 0.00 38.78 3.93
5043 5737 1.068250 GCCAACGCCTAGAGCCTAG 59.932 63.158 0.00 3.06 38.78 3.02
5044 5738 1.742768 CCAACGCCTAGAGCCTAGG 59.257 63.158 18.85 18.85 38.78 3.02
5049 5743 4.350441 CCTAGAGCCTAGGCGCGC 62.350 72.222 28.76 25.94 45.41 6.86
5050 5744 3.291383 CTAGAGCCTAGGCGCGCT 61.291 66.667 32.29 25.96 45.41 5.92
5051 5745 2.833582 TAGAGCCTAGGCGCGCTT 60.834 61.111 32.29 27.46 45.41 4.68
5052 5746 1.516365 CTAGAGCCTAGGCGCGCTTA 61.516 60.000 32.29 27.04 45.41 3.09
5053 5747 1.105167 TAGAGCCTAGGCGCGCTTAA 61.105 55.000 32.29 15.41 45.41 1.85
5054 5748 2.356818 AGAGCCTAGGCGCGCTTAAG 62.357 60.000 32.29 22.56 45.41 1.85
5055 5749 3.640992 GCCTAGGCGCGCTTAAGC 61.641 66.667 32.29 28.27 37.78 3.09
5182 5881 3.868077 GTCAGGTCACATTAGAGCATCAC 59.132 47.826 0.00 0.00 38.44 3.06
5221 5920 6.524734 TGTAACATATCAGCTGGTAGATTGG 58.475 40.000 15.13 2.62 0.00 3.16
5306 6008 2.948979 CCCTTGGCATTAGCGTAATGAA 59.051 45.455 16.77 6.74 46.52 2.57
5363 6065 1.134946 ACAAACCACAGAAACAGCTGC 59.865 47.619 15.27 0.00 39.51 5.25
5368 6070 1.267806 CCACAGAAACAGCTGCGAAAT 59.732 47.619 15.27 0.00 39.51 2.17
5407 6109 1.928868 AACAAGCTTCCCCATCAAGG 58.071 50.000 0.00 0.00 37.03 3.61
5587 6289 9.061610 GTCATGTTTCATATGAAAAAGTAACGG 57.938 33.333 28.02 13.85 44.58 4.44
5597 6299 1.412387 AAAGTAACGGCGTTCTCGAC 58.588 50.000 30.35 21.06 42.36 4.20
5665 6368 3.971305 TCAGTTTCACTTGTCCTTCCCTA 59.029 43.478 0.00 0.00 0.00 3.53
5674 6377 0.179034 GTCCTTCCCTATGCTGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
5777 6480 2.172293 GAGCATCTTCTGGGATGGAAGT 59.828 50.000 6.60 0.00 42.21 3.01
5805 6508 2.438795 GGCAAGGCCCAGTAACCA 59.561 61.111 0.00 0.00 44.06 3.67
5887 6590 5.165676 TGATGTGATGTTACACCGTAGAAC 58.834 41.667 0.00 0.00 39.69 3.01
5981 6686 8.857098 TGTAGTTTACTCTGTATCTGAACTTGT 58.143 33.333 0.00 0.00 0.00 3.16
5985 6690 9.651718 GTTTACTCTGTATCTGAACTTGTTTTG 57.348 33.333 0.00 0.00 0.00 2.44
6024 6730 4.947645 TGCTATGATGAATGTGTCGATGA 58.052 39.130 0.00 0.00 0.00 2.92
6025 6731 5.544650 TGCTATGATGAATGTGTCGATGAT 58.455 37.500 0.00 0.00 0.00 2.45
6026 6732 5.407387 TGCTATGATGAATGTGTCGATGATG 59.593 40.000 0.00 0.00 0.00 3.07
6096 6802 7.824704 AGTCGATAAATGATATCATCTGTGC 57.175 36.000 18.44 6.98 35.10 4.57
6103 6809 2.297315 TGATATCATCTGTGCCGTCTCC 59.703 50.000 0.00 0.00 0.00 3.71
6169 6875 2.692557 TGGTTTGTTGAGGATGTTGGTG 59.307 45.455 0.00 0.00 0.00 4.17
6213 6919 2.651361 CCTCTCGTCTGGTTGCGT 59.349 61.111 0.00 0.00 0.00 5.24
6239 6945 0.685660 GTCTTGGTTTCGGGTCTCCT 59.314 55.000 0.00 0.00 0.00 3.69
6267 6973 2.289565 GGCTCCCTGCATAAACAGTAC 58.710 52.381 0.00 0.00 45.15 2.73
6269 6975 1.933853 CTCCCTGCATAAACAGTACGC 59.066 52.381 0.00 0.00 35.83 4.42
6270 6976 1.276705 TCCCTGCATAAACAGTACGCA 59.723 47.619 0.00 0.00 35.83 5.24
6295 7001 7.587037 AAACTGAATTTTCTGATGTTCCTGA 57.413 32.000 4.46 0.00 0.00 3.86
6303 7009 1.197721 CTGATGTTCCTGAAACGTGGC 59.802 52.381 0.00 0.00 41.02 5.01
6333 7039 4.836125 ACTGAATTTTCTGATGTTGCGT 57.164 36.364 4.46 0.00 0.00 5.24
6410 7116 3.484886 GCGAGTACTGAACCTACGTAGTG 60.485 52.174 20.73 14.27 45.73 2.74
6418 7124 0.114954 ACCTACGTAGTGTTGGGGGA 59.885 55.000 20.73 0.00 46.38 4.81
6420 7126 1.553706 CTACGTAGTGTTGGGGGAGT 58.446 55.000 14.66 0.00 45.73 3.85
6466 8371 4.542735 AGTAAAAATAAGTGCAACACGGC 58.457 39.130 0.00 0.00 41.43 5.68
6508 8413 4.458397 AGATCACCATTCACACATGATCC 58.542 43.478 0.00 0.00 44.41 3.36
6516 8422 5.163683 CCATTCACACATGATCCTCTCAAAC 60.164 44.000 0.00 0.00 37.44 2.93
6546 8452 0.890542 CCACCATCCGCCCATACATG 60.891 60.000 0.00 0.00 0.00 3.21
6549 8455 0.324614 CCATCCGCCCATACATGCTA 59.675 55.000 0.00 0.00 0.00 3.49
6550 8456 1.271325 CCATCCGCCCATACATGCTAA 60.271 52.381 0.00 0.00 0.00 3.09
6568 8474 7.445402 ACATGCTAAACTTAGTTCACTGAACAT 59.555 33.333 21.39 10.64 44.11 2.71
6602 8510 1.790623 ACGACAATGTAACACGACAGC 59.209 47.619 0.00 0.00 31.51 4.40
6604 8512 2.139917 GACAATGTAACACGACAGCCA 58.860 47.619 0.00 0.00 31.51 4.75
6605 8513 2.143122 ACAATGTAACACGACAGCCAG 58.857 47.619 0.00 0.00 31.51 4.85
6606 8514 2.143122 CAATGTAACACGACAGCCAGT 58.857 47.619 0.00 0.00 31.51 4.00
6607 8515 2.080286 ATGTAACACGACAGCCAGTC 57.920 50.000 0.00 0.00 44.02 3.51
6767 8679 1.880221 CGCATAATCCCATGGGCGTAA 60.880 52.381 27.41 9.44 39.65 3.18
6909 8821 4.322650 GCCAAGAAAACATTAGGGCATCAA 60.323 41.667 0.00 0.00 39.66 2.57
6914 8826 1.750193 ACATTAGGGCATCAACCGTG 58.250 50.000 0.00 0.00 0.00 4.94
6952 8864 2.298446 TCGATGCAATTCCCAAGCAAAA 59.702 40.909 0.00 0.00 42.15 2.44
6955 8868 4.436317 CGATGCAATTCCCAAGCAAAAATG 60.436 41.667 0.00 0.00 42.15 2.32
6966 8879 4.503643 CCAAGCAAAAATGACAAGGACCAT 60.504 41.667 0.00 0.00 0.00 3.55
6977 8890 4.022416 TGACAAGGACCATACAAAACATGC 60.022 41.667 0.00 0.00 0.00 4.06
6980 8893 2.042979 AGGACCATACAAAACATGCCCT 59.957 45.455 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.448588 TTTGAAATAATTTCGATCCATTGCG 57.551 32.000 0.00 0.00 42.55 4.85
39 40 8.914654 TCTGAGCAACATTTTGAAATAATTTCG 58.085 29.630 0.00 0.00 42.55 3.46
64 65 8.186821 ACTACTACAACGTTGACCTTATATGTC 58.813 37.037 33.66 0.00 0.00 3.06
65 66 7.972277 CACTACTACAACGTTGACCTTATATGT 59.028 37.037 33.66 17.80 0.00 2.29
66 67 7.972277 ACACTACTACAACGTTGACCTTATATG 59.028 37.037 33.66 21.06 0.00 1.78
79 87 6.892951 GCGATTTATCAAACACTACTACAACG 59.107 38.462 0.00 0.00 0.00 4.10
88 96 3.071479 ACCACGCGATTTATCAAACACT 58.929 40.909 15.93 0.00 0.00 3.55
105 113 2.485814 GCTTTGAGATGACCTGAACCAC 59.514 50.000 0.00 0.00 0.00 4.16
137 145 4.055360 CGACAAGACCATTACAACTGTCA 58.945 43.478 0.00 0.00 0.00 3.58
138 146 4.056050 ACGACAAGACCATTACAACTGTC 58.944 43.478 0.00 0.00 0.00 3.51
142 150 3.678548 GGAGACGACAAGACCATTACAAC 59.321 47.826 0.00 0.00 0.00 3.32
174 193 0.179124 CGCCAAGCTAGAGACCAGAC 60.179 60.000 0.00 0.00 0.00 3.51
216 235 1.528824 CCGCCAACTCCTCCATCAT 59.471 57.895 0.00 0.00 0.00 2.45
238 257 5.308014 TGTCAGATATGTGTTGTTGAAGCT 58.692 37.500 0.00 0.00 0.00 3.74
300 322 1.212751 CGTGTCGATGAGTCTGCCA 59.787 57.895 0.00 0.00 0.00 4.92
313 335 2.205074 CAATCCACCTCATAGCGTGTC 58.795 52.381 0.00 0.00 0.00 3.67
316 338 1.555075 ACACAATCCACCTCATAGCGT 59.445 47.619 0.00 0.00 0.00 5.07
332 356 3.118920 CGTATACCAGAATCACCCACACA 60.119 47.826 0.00 0.00 0.00 3.72
348 372 4.684703 GGCATTGTGATACTGACCGTATAC 59.315 45.833 0.00 0.00 38.90 1.47
390 416 1.283793 CCTTGTTGCAGCGTTCCTG 59.716 57.895 0.00 0.00 44.67 3.86
398 424 2.049802 CTTGGCGCCTTGTTGCAG 60.050 61.111 29.70 7.97 0.00 4.41
418 444 1.370064 CACCCTCCTTCGTTTCGGT 59.630 57.895 0.00 0.00 0.00 4.69
421 447 2.093658 TGATAGCACCCTCCTTCGTTTC 60.094 50.000 0.00 0.00 0.00 2.78
422 448 1.906574 TGATAGCACCCTCCTTCGTTT 59.093 47.619 0.00 0.00 0.00 3.60
452 478 1.136336 GTTTCGCTCCATTGACGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
457 483 0.721718 CTCCGTTTCGCTCCATTGAC 59.278 55.000 0.00 0.00 0.00 3.18
462 488 2.342279 CCACTCCGTTTCGCTCCA 59.658 61.111 0.00 0.00 0.00 3.86
463 489 3.119096 GCCACTCCGTTTCGCTCC 61.119 66.667 0.00 0.00 0.00 4.70
502 531 1.377202 ATGCCTCGTTTGTCCGCAT 60.377 52.632 0.00 0.00 35.40 4.73
540 569 1.805869 ACGACAGACGCTACTACTGT 58.194 50.000 0.00 0.00 46.94 3.55
541 570 2.896243 AACGACAGACGCTACTACTG 57.104 50.000 0.00 0.00 46.94 2.74
544 576 2.322161 GCAAAACGACAGACGCTACTA 58.678 47.619 0.00 0.00 46.94 1.82
591 623 2.048503 ACTAAGTCCGCACGCCAC 60.049 61.111 0.00 0.00 0.00 5.01
624 807 7.688578 CCGAAAAGATGTAACTTCGAAGATTTC 59.311 37.037 31.08 20.83 42.44 2.17
641 824 7.915397 CGGTTTTATGATGATTTCCGAAAAGAT 59.085 33.333 0.00 0.00 39.17 2.40
643 826 7.247728 TCGGTTTTATGATGATTTCCGAAAAG 58.752 34.615 0.00 0.00 41.96 2.27
647 830 5.065474 GGTTCGGTTTTATGATGATTTCCGA 59.935 40.000 0.00 0.00 42.94 4.55
648 831 5.270853 GGTTCGGTTTTATGATGATTTCCG 58.729 41.667 0.00 0.00 38.36 4.30
649 832 5.588240 GGGTTCGGTTTTATGATGATTTCC 58.412 41.667 0.00 0.00 0.00 3.13
651 834 4.944930 TCGGGTTCGGTTTTATGATGATTT 59.055 37.500 0.00 0.00 36.95 2.17
654 837 3.613494 TCGGGTTCGGTTTTATGATGA 57.387 42.857 0.00 0.00 36.95 2.92
655 838 4.688511 TTTCGGGTTCGGTTTTATGATG 57.311 40.909 0.00 0.00 36.95 3.07
709 914 7.552687 TGTCCTATTTTTGGTAGTGAATAGCTG 59.447 37.037 0.00 0.00 33.06 4.24
715 920 9.747898 AATATGTGTCCTATTTTTGGTAGTGAA 57.252 29.630 0.00 0.00 0.00 3.18
717 922 9.173021 TCAATATGTGTCCTATTTTTGGTAGTG 57.827 33.333 0.00 0.00 0.00 2.74
742 947 5.186996 TGTGCCAACTCAAAGAAAGAATC 57.813 39.130 0.00 0.00 0.00 2.52
777 987 1.941403 ATGGATTGGCAGGGGGAGTG 61.941 60.000 0.00 0.00 0.00 3.51
829 1045 5.974751 GCTGATCAAGTAGTTCTACAGTAGC 59.025 44.000 11.73 8.48 0.00 3.58
838 1054 5.275067 AGGAGATGCTGATCAAGTAGTTC 57.725 43.478 0.00 0.00 0.00 3.01
839 1055 4.100808 GGAGGAGATGCTGATCAAGTAGTT 59.899 45.833 0.00 0.00 0.00 2.24
847 1072 2.036217 CTCACTGGAGGAGATGCTGATC 59.964 54.545 0.00 0.00 37.51 2.92
882 1107 8.456471 GGTAGTACTGCCTTTAAAATACTTTGG 58.544 37.037 21.62 0.00 32.22 3.28
919 1225 5.191522 GGGCCCCCATATATTTTATGCATTT 59.808 40.000 12.23 0.00 35.81 2.32
931 1237 8.675096 GCTATAATAAAATAGGGCCCCCATATA 58.325 37.037 21.43 3.62 38.92 0.86
932 1238 7.423754 GGCTATAATAAAATAGGGCCCCCATAT 60.424 40.741 21.43 7.27 38.92 1.78
933 1239 6.126008 GGCTATAATAAAATAGGGCCCCCATA 60.126 42.308 21.43 4.55 38.92 2.74
934 1240 5.341708 GGCTATAATAAAATAGGGCCCCCAT 60.342 44.000 21.43 9.84 38.92 4.00
935 1241 4.016944 GGCTATAATAAAATAGGGCCCCCA 60.017 45.833 21.43 7.28 38.92 4.96
1039 1639 3.429410 CGGAATGAAAATTGGAGGAAGCC 60.429 47.826 0.00 0.00 0.00 4.35
1093 1693 2.829120 GGTCTCAACTAACTGCTCCTCT 59.171 50.000 0.00 0.00 0.00 3.69
1105 1705 3.382832 CCGCCTCGGGTCTCAACT 61.383 66.667 0.00 0.00 44.15 3.16
1224 1827 1.298014 GGGTCTCCTGCTCCTTGTG 59.702 63.158 0.00 0.00 0.00 3.33
1225 1828 1.152030 TGGGTCTCCTGCTCCTTGT 60.152 57.895 0.00 0.00 0.00 3.16
1227 1830 4.143740 CTGGGTCTCCTGCTCCTT 57.856 61.111 0.00 0.00 0.00 3.36
1233 1836 3.324930 TGGCTGCTGGGTCTCCTG 61.325 66.667 0.00 0.00 35.38 3.86
1234 1837 3.007920 CTGGCTGCTGGGTCTCCT 61.008 66.667 0.00 0.00 0.00 3.69
1235 1838 4.106925 CCTGGCTGCTGGGTCTCC 62.107 72.222 0.00 0.00 0.00 3.71
1236 1839 4.106925 CCCTGGCTGCTGGGTCTC 62.107 72.222 18.48 0.00 38.65 3.36
1320 1930 0.322456 TCCGCCATGGTTTCTTCCTG 60.322 55.000 14.67 0.00 39.52 3.86
1367 1977 1.353103 GCAATCCGGCAGAATCACG 59.647 57.895 0.00 0.00 0.00 4.35
1422 2034 0.182775 AAAGCGGGACAGGAACAACT 59.817 50.000 0.00 0.00 0.00 3.16
1423 2035 0.591659 GAAAGCGGGACAGGAACAAC 59.408 55.000 0.00 0.00 0.00 3.32
1424 2036 0.181587 TGAAAGCGGGACAGGAACAA 59.818 50.000 0.00 0.00 0.00 2.83
1432 2045 0.250338 AGAACAGGTGAAAGCGGGAC 60.250 55.000 0.00 0.00 40.95 4.46
1443 2056 1.076332 GCGCGTGAATAAGAACAGGT 58.924 50.000 8.43 0.00 0.00 4.00
1478 2093 1.819632 GATTAGCACTGGGCCACGG 60.820 63.158 0.00 1.10 46.50 4.94
1481 2096 1.078497 CGTGATTAGCACTGGGCCA 60.078 57.895 5.85 5.85 45.49 5.36
1546 2161 2.577593 GACACCTACGCACTCCCC 59.422 66.667 0.00 0.00 0.00 4.81
1560 2175 0.034198 TTTCAGAATCCGCACCGACA 59.966 50.000 0.00 0.00 0.00 4.35
1577 2192 4.351192 GAGAAAGAACACAACACGCATTT 58.649 39.130 0.00 0.00 0.00 2.32
1681 2306 7.036863 TCCCCCTAACTTGAGATTTCTTAACAT 60.037 37.037 0.00 0.00 0.00 2.71
1695 2320 4.286707 CCCCTAAAATTCCCCCTAACTTG 58.713 47.826 0.00 0.00 0.00 3.16
1696 2321 3.273886 CCCCCTAAAATTCCCCCTAACTT 59.726 47.826 0.00 0.00 0.00 2.66
1713 2351 1.632965 GGATAAGAACACGGCCCCCT 61.633 60.000 0.00 0.00 0.00 4.79
1735 2373 3.365265 CAAACGCCCTCCCAGCAC 61.365 66.667 0.00 0.00 0.00 4.40
1778 2416 4.103785 ACCATGACCATGAAGGATAAGGAG 59.896 45.833 11.28 0.00 41.20 3.69
1825 2469 9.034544 GTTTATCATCAAGAGCAAAACAAGTTT 57.965 29.630 0.00 0.00 32.17 2.66
1883 2527 1.578583 CCCGGCCGTAAGATTACTTG 58.421 55.000 26.12 3.25 43.02 3.16
1890 2534 3.605412 TTCCTCCCCGGCCGTAAGA 62.605 63.158 26.12 16.18 43.02 2.10
1892 2536 3.393106 GTTCCTCCCCGGCCGTAA 61.393 66.667 26.12 7.85 0.00 3.18
1899 2543 2.361230 GGGCAAAGTTCCTCCCCG 60.361 66.667 0.00 0.00 32.60 5.73
1901 2545 0.112412 TCTTGGGCAAAGTTCCTCCC 59.888 55.000 0.67 0.00 37.18 4.30
2011 2656 1.296715 GTGGACCTGAATCAGCGGT 59.703 57.895 4.40 0.00 0.00 5.68
2019 2664 2.771943 AGTTCTTCACTGTGGACCTGAA 59.228 45.455 8.11 0.00 32.83 3.02
2021 2666 2.366916 AGAGTTCTTCACTGTGGACCTG 59.633 50.000 8.11 0.00 35.01 4.00
2079 2726 2.860735 CAAAAAGGATAGCTCGAGGTCG 59.139 50.000 22.33 0.00 41.45 4.79
2080 2727 4.116238 CTCAAAAAGGATAGCTCGAGGTC 58.884 47.826 22.33 7.65 0.00 3.85
2081 2728 3.769844 TCTCAAAAAGGATAGCTCGAGGT 59.230 43.478 22.31 22.31 0.00 3.85
2082 2729 4.392921 TCTCAAAAAGGATAGCTCGAGG 57.607 45.455 15.58 0.00 0.00 4.63
2083 2730 5.639506 TGTTTCTCAAAAAGGATAGCTCGAG 59.360 40.000 8.45 8.45 0.00 4.04
2084 2731 5.547465 TGTTTCTCAAAAAGGATAGCTCGA 58.453 37.500 0.00 0.00 0.00 4.04
2119 2772 9.757227 AACTCAGCTTTAATCAGATCTACATAC 57.243 33.333 0.00 0.00 0.00 2.39
2120 2773 9.973450 GAACTCAGCTTTAATCAGATCTACATA 57.027 33.333 0.00 0.00 0.00 2.29
2121 2774 7.651304 CGAACTCAGCTTTAATCAGATCTACAT 59.349 37.037 0.00 0.00 0.00 2.29
2122 2775 6.975197 CGAACTCAGCTTTAATCAGATCTACA 59.025 38.462 0.00 0.00 0.00 2.74
2328 2981 0.253044 AACATGTCAGGGGATGTCCG 59.747 55.000 0.00 0.00 36.71 4.79
2336 2989 0.395724 GGGGCCTTAACATGTCAGGG 60.396 60.000 20.56 9.23 0.00 4.45
2365 3018 0.387622 ACGCTTGCAACACATGATGC 60.388 50.000 0.00 7.14 43.09 3.91
2460 3120 1.142474 GCTGAACAATGCAAAGCACC 58.858 50.000 0.00 0.00 43.04 5.01
2488 3148 7.850982 CAGAACAAATTAACGTGGCATAGATAC 59.149 37.037 0.00 0.00 0.00 2.24
2492 3152 4.793216 GCAGAACAAATTAACGTGGCATAG 59.207 41.667 0.00 0.00 0.00 2.23
2555 3215 9.691362 GAATGTAAACCAACAACAAATAGACAT 57.309 29.630 0.00 0.00 32.02 3.06
2567 3230 8.153550 AGCCAATTAATTGAATGTAAACCAACA 58.846 29.630 26.32 0.00 40.14 3.33
2603 3278 4.721274 TGAACTCCAATACAGGATCCATCA 59.279 41.667 15.82 0.00 36.99 3.07
2625 3300 9.828220 CACGTTTTTAGTGTCACATTTTATTTG 57.172 29.630 5.62 0.00 35.08 2.32
2648 3323 0.950836 TGTTGATTCCAAGTGGCACG 59.049 50.000 12.71 0.00 32.06 5.34
2682 3357 9.167311 GCACCCATTAGACCTATATAAATTCAG 57.833 37.037 0.00 0.00 0.00 3.02
2683 3358 8.664992 TGCACCCATTAGACCTATATAAATTCA 58.335 33.333 0.00 0.00 0.00 2.57
2684 3359 9.167311 CTGCACCCATTAGACCTATATAAATTC 57.833 37.037 0.00 0.00 0.00 2.17
2686 3361 7.461043 TCCTGCACCCATTAGACCTATATAAAT 59.539 37.037 0.00 0.00 0.00 1.40
2758 3434 6.148480 CCTAGCAAATTATATGTGCTGGACTC 59.852 42.308 14.56 0.00 46.42 3.36
2765 3441 5.765182 ACTGGACCTAGCAAATTATATGTGC 59.235 40.000 0.00 0.00 38.59 4.57
2790 3466 5.479375 ACGTAACTTCTGTTCCATCCTAAGA 59.521 40.000 0.00 0.00 37.59 2.10
2924 3605 6.568869 ACAACAGCAGACTATGACTCTAATC 58.431 40.000 0.00 0.00 0.00 1.75
3104 3785 4.259451 CGACTAAATGACTTGTCGCTTAGC 60.259 45.833 15.50 0.00 44.00 3.09
3345 4026 2.741486 TAACTTCCACGCACCCCTGC 62.741 60.000 0.00 0.00 40.38 4.85
3377 4058 2.445427 CCAAGTCATGGTTATGGCACA 58.555 47.619 0.00 0.00 44.85 4.57
3592 4285 1.527034 TCACAGGCTAGCAAAAGCAG 58.473 50.000 18.24 0.00 44.64 4.24
3615 4308 0.469705 AGGCTTGGTTGCAATCACCA 60.470 50.000 13.08 8.47 34.04 4.17
3628 4321 2.421424 GTCCTTATGCACTGAAGGCTTG 59.579 50.000 3.46 0.00 41.80 4.01
4033 4727 1.522580 GCTGGAGGGCTCGACATTC 60.523 63.158 0.00 0.00 0.00 2.67
4169 4863 5.865085 TGTCACAGGTTAGCATAGAGTTTT 58.135 37.500 0.00 0.00 0.00 2.43
4800 5494 8.210946 TCAAACTTCTTCTCCTAGAACATTCAA 58.789 33.333 0.00 0.00 29.89 2.69
4914 5608 0.725117 ACGCACAATTAACGCCTAGC 59.275 50.000 0.00 0.00 0.00 3.42
4915 5609 3.465122 AAACGCACAATTAACGCCTAG 57.535 42.857 0.00 0.00 0.00 3.02
4916 5610 3.556513 CAAAACGCACAATTAACGCCTA 58.443 40.909 0.00 0.00 0.00 3.93
4917 5611 2.389998 CAAAACGCACAATTAACGCCT 58.610 42.857 0.00 0.00 0.00 5.52
4918 5612 1.136748 GCAAAACGCACAATTAACGCC 60.137 47.619 0.00 0.00 41.79 5.68
4919 5613 1.136748 GGCAAAACGCACAATTAACGC 60.137 47.619 0.00 0.00 45.17 4.84
4920 5614 2.097637 GTGGCAAAACGCACAATTAACG 60.098 45.455 0.00 0.00 45.17 3.18
4921 5615 2.219903 GGTGGCAAAACGCACAATTAAC 59.780 45.455 0.00 0.00 45.17 2.01
4922 5616 2.474816 GGTGGCAAAACGCACAATTAA 58.525 42.857 0.00 0.00 45.17 1.40
4923 5617 1.600663 CGGTGGCAAAACGCACAATTA 60.601 47.619 0.00 0.00 45.17 1.40
4924 5618 0.873743 CGGTGGCAAAACGCACAATT 60.874 50.000 0.00 0.00 45.17 2.32
4925 5619 1.299773 CGGTGGCAAAACGCACAAT 60.300 52.632 0.00 0.00 45.17 2.71
4926 5620 2.103143 CGGTGGCAAAACGCACAA 59.897 55.556 0.00 0.00 45.17 3.33
4931 5625 2.354539 CAAGGCGGTGGCAAAACG 60.355 61.111 0.00 0.00 42.47 3.60
4932 5626 2.661537 GCAAGGCGGTGGCAAAAC 60.662 61.111 0.00 0.00 42.47 2.43
4943 5637 1.086696 TCATCAGTAAAGCGCAAGGC 58.913 50.000 11.47 0.00 44.05 4.35
4944 5638 1.398390 GGTCATCAGTAAAGCGCAAGG 59.602 52.381 11.47 0.00 38.28 3.61
4945 5639 2.076100 TGGTCATCAGTAAAGCGCAAG 58.924 47.619 11.47 0.00 43.44 4.01
4946 5640 2.177394 TGGTCATCAGTAAAGCGCAA 57.823 45.000 11.47 0.00 0.00 4.85
4947 5641 2.177394 TTGGTCATCAGTAAAGCGCA 57.823 45.000 11.47 0.00 0.00 6.09
4948 5642 2.484264 ACTTTGGTCATCAGTAAAGCGC 59.516 45.455 0.00 0.00 34.38 5.92
4949 5643 3.667960 GCACTTTGGTCATCAGTAAAGCG 60.668 47.826 0.00 0.00 34.38 4.68
4950 5644 3.253188 TGCACTTTGGTCATCAGTAAAGC 59.747 43.478 0.00 0.00 34.38 3.51
4951 5645 5.396484 CATGCACTTTGGTCATCAGTAAAG 58.604 41.667 0.00 0.00 36.48 1.85
4952 5646 4.321156 GCATGCACTTTGGTCATCAGTAAA 60.321 41.667 14.21 0.00 0.00 2.01
4953 5647 3.191162 GCATGCACTTTGGTCATCAGTAA 59.809 43.478 14.21 0.00 0.00 2.24
4954 5648 2.749076 GCATGCACTTTGGTCATCAGTA 59.251 45.455 14.21 0.00 0.00 2.74
4955 5649 1.542915 GCATGCACTTTGGTCATCAGT 59.457 47.619 14.21 0.00 0.00 3.41
4956 5650 1.816835 AGCATGCACTTTGGTCATCAG 59.183 47.619 21.98 0.00 0.00 2.90
4957 5651 1.913778 AGCATGCACTTTGGTCATCA 58.086 45.000 21.98 0.00 0.00 3.07
4958 5652 4.357142 CATAAGCATGCACTTTGGTCATC 58.643 43.478 21.98 0.00 0.00 2.92
4959 5653 4.380841 CATAAGCATGCACTTTGGTCAT 57.619 40.909 21.98 0.00 0.00 3.06
4960 5654 3.853831 CATAAGCATGCACTTTGGTCA 57.146 42.857 21.98 0.00 0.00 4.02
4971 5665 2.313234 GCATAACTGCGCATAAGCATG 58.687 47.619 12.24 11.51 46.97 4.06
4972 5666 2.693797 GCATAACTGCGCATAAGCAT 57.306 45.000 12.24 0.00 46.97 3.79
4983 5677 4.864916 ACGCTTAATCTGTGCATAACTG 57.135 40.909 0.00 0.00 0.00 3.16
4984 5678 5.661458 ACTACGCTTAATCTGTGCATAACT 58.339 37.500 0.00 0.00 0.00 2.24
4985 5679 5.968387 ACTACGCTTAATCTGTGCATAAC 57.032 39.130 0.00 0.00 0.00 1.89
4986 5680 7.307160 GCATAACTACGCTTAATCTGTGCATAA 60.307 37.037 0.00 0.00 0.00 1.90
4987 5681 6.145534 GCATAACTACGCTTAATCTGTGCATA 59.854 38.462 0.00 0.00 0.00 3.14
4988 5682 5.050091 GCATAACTACGCTTAATCTGTGCAT 60.050 40.000 0.00 0.00 0.00 3.96
4989 5683 4.270084 GCATAACTACGCTTAATCTGTGCA 59.730 41.667 0.00 0.00 0.00 4.57
4990 5684 4.606232 CGCATAACTACGCTTAATCTGTGC 60.606 45.833 0.00 0.00 0.00 4.57
4991 5685 4.994734 CGCATAACTACGCTTAATCTGTG 58.005 43.478 0.00 0.00 0.00 3.66
5019 5713 0.165944 CTCTAGGCGTTGGCAAAACG 59.834 55.000 16.88 16.88 45.56 3.60
5020 5714 0.109735 GCTCTAGGCGTTGGCAAAAC 60.110 55.000 0.00 0.00 42.47 2.43
5021 5715 1.241315 GGCTCTAGGCGTTGGCAAAA 61.241 55.000 0.00 0.00 42.47 2.44
5022 5716 1.674322 GGCTCTAGGCGTTGGCAAA 60.674 57.895 0.00 0.00 42.47 3.68
5023 5717 1.261938 TAGGCTCTAGGCGTTGGCAA 61.262 55.000 0.00 0.00 46.23 4.52
5024 5718 1.676678 CTAGGCTCTAGGCGTTGGCA 61.677 60.000 0.00 0.00 46.23 4.92
5025 5719 1.068250 CTAGGCTCTAGGCGTTGGC 59.932 63.158 0.00 0.00 46.23 4.52
5026 5720 1.742768 CCTAGGCTCTAGGCGTTGG 59.257 63.158 13.35 10.22 46.23 3.77
5032 5726 4.350441 GCGCGCCTAGGCTCTAGG 62.350 72.222 30.55 16.12 39.32 3.02
5033 5727 1.516365 TAAGCGCGCCTAGGCTCTAG 61.516 60.000 30.55 18.84 38.88 2.43
5034 5728 1.105167 TTAAGCGCGCCTAGGCTCTA 61.105 55.000 30.55 9.53 38.88 2.43
5035 5729 2.356818 CTTAAGCGCGCCTAGGCTCT 62.357 60.000 30.55 20.68 38.88 4.09
5036 5730 1.951631 CTTAAGCGCGCCTAGGCTC 60.952 63.158 30.55 22.76 38.88 4.70
5037 5731 2.107141 CTTAAGCGCGCCTAGGCT 59.893 61.111 30.55 14.71 42.33 4.58
5038 5732 3.640992 GCTTAAGCGCGCCTAGGC 61.641 66.667 30.33 27.28 37.85 3.93
5074 5768 6.264292 TGGTCTCTTGCAAGCATAGTTAAAAA 59.736 34.615 21.99 0.00 0.00 1.94
5075 5769 5.767665 TGGTCTCTTGCAAGCATAGTTAAAA 59.232 36.000 21.99 0.00 0.00 1.52
5076 5770 5.312895 TGGTCTCTTGCAAGCATAGTTAAA 58.687 37.500 21.99 0.00 0.00 1.52
5077 5771 4.905429 TGGTCTCTTGCAAGCATAGTTAA 58.095 39.130 21.99 0.62 0.00 2.01
5078 5772 4.551702 TGGTCTCTTGCAAGCATAGTTA 57.448 40.909 21.99 1.40 0.00 2.24
5079 5773 3.423539 TGGTCTCTTGCAAGCATAGTT 57.576 42.857 21.99 0.00 0.00 2.24
5080 5774 3.423539 TTGGTCTCTTGCAAGCATAGT 57.576 42.857 21.99 0.00 0.00 2.12
5081 5775 3.503363 TGTTTGGTCTCTTGCAAGCATAG 59.497 43.478 21.99 13.93 0.00 2.23
5082 5776 3.485394 TGTTTGGTCTCTTGCAAGCATA 58.515 40.909 21.99 6.36 0.00 3.14
5083 5777 2.309613 TGTTTGGTCTCTTGCAAGCAT 58.690 42.857 21.99 0.00 0.00 3.79
5084 5778 1.761449 TGTTTGGTCTCTTGCAAGCA 58.239 45.000 21.99 10.85 0.00 3.91
5085 5779 3.375782 AATGTTTGGTCTCTTGCAAGC 57.624 42.857 21.99 8.18 0.00 4.01
5182 5881 9.546428 TGATATGTTACATCACTTGTTATGGAG 57.454 33.333 0.00 0.00 39.87 3.86
5264 5964 6.660800 AGGGGCTTTAAGGAGAACTATTAAC 58.339 40.000 0.00 0.00 0.00 2.01
5292 5994 4.782195 GCTTCGGTGTTCATTACGCTAATG 60.782 45.833 9.92 9.92 45.30 1.90
5300 6002 2.500098 AGCCTAGCTTCGGTGTTCATTA 59.500 45.455 0.00 0.00 33.89 1.90
5306 6008 2.660064 CCCAGCCTAGCTTCGGTGT 61.660 63.158 0.00 0.00 36.40 4.16
5363 6065 5.359860 AGGGCCCTAATGTTCTTTAATTTCG 59.640 40.000 27.42 0.00 0.00 3.46
5368 6070 6.142259 TGTTAGGGCCCTAATGTTCTTTAA 57.858 37.500 40.24 18.81 40.18 1.52
5407 6109 2.037772 TCTCCTGAAGAGTGGTGAAAGC 59.962 50.000 0.00 0.00 43.71 3.51
5450 6152 5.957842 TTAATGGCTGTGACCAAAACTAG 57.042 39.130 0.00 0.00 44.65 2.57
5597 6299 0.318120 AAAAAGGTTGGCCATCGCAG 59.682 50.000 6.09 0.00 37.19 5.18
5665 6368 1.279496 TAGTCAGTTCCAGCCAGCAT 58.721 50.000 0.00 0.00 0.00 3.79
5674 6377 5.559148 AGGATCATTCCATAGTCAGTTCC 57.441 43.478 0.00 0.00 45.30 3.62
5805 6508 2.040412 AGGGCCGTCTTTCTTCTTTCAT 59.960 45.455 0.00 0.00 0.00 2.57
5981 6686 0.106335 TACGGTTCCGCAGACCAAAA 59.894 50.000 11.32 0.00 36.99 2.44
5985 6690 1.445582 CAGTACGGTTCCGCAGACC 60.446 63.158 11.32 0.00 0.00 3.85
6024 6730 1.999735 CACGACAGCCACGATTTACAT 59.000 47.619 0.00 0.00 34.70 2.29
6025 6731 1.424403 CACGACAGCCACGATTTACA 58.576 50.000 0.00 0.00 34.70 2.41
6026 6732 0.094730 GCACGACAGCCACGATTTAC 59.905 55.000 0.00 0.00 34.70 2.01
6169 6875 3.149196 TCTCAGATTGCACTGAAAACCC 58.851 45.455 8.24 0.00 44.62 4.11
6202 6908 0.249911 ACAGGAAGACGCAACCAGAC 60.250 55.000 0.00 0.00 0.00 3.51
6213 6919 1.071699 CCCGAAACCAAGACAGGAAGA 59.928 52.381 0.00 0.00 0.00 2.87
6239 6945 3.077556 GCAGGGAGCCGGAAGAGA 61.078 66.667 5.05 0.00 37.23 3.10
6267 6973 6.346040 GGAACATCAGAAAATTCAGTTTTGCG 60.346 38.462 0.00 0.00 40.04 4.85
6269 6975 7.922278 TCAGGAACATCAGAAAATTCAGTTTTG 59.078 33.333 0.00 0.00 40.04 2.44
6270 6976 8.010733 TCAGGAACATCAGAAAATTCAGTTTT 57.989 30.769 0.00 0.00 42.56 2.43
6295 7001 1.102978 AGTTTGCTTCTGCCACGTTT 58.897 45.000 0.00 0.00 38.71 3.60
6303 7009 6.921857 ACATCAGAAAATTCAGTTTGCTTCTG 59.078 34.615 6.08 6.08 33.13 3.02
6333 7039 2.721231 GGTTCGCTGCTGCACAAA 59.279 55.556 16.29 3.86 39.64 2.83
6410 7116 3.933861 AGTTCATGATACTCCCCCAAC 57.066 47.619 0.00 0.00 0.00 3.77
6446 8351 3.318275 TGGCCGTGTTGCACTTATTTTTA 59.682 39.130 0.00 0.00 31.34 1.52
6466 8371 9.202273 GTGATCTTATAGCAGAAGTTTCTATGG 57.798 37.037 0.00 0.00 35.34 2.74
6508 8413 7.452880 TGGTGGAAATCAATAAGTTTGAGAG 57.547 36.000 0.00 0.00 0.00 3.20
6516 8422 3.004734 GGCGGATGGTGGAAATCAATAAG 59.995 47.826 0.00 0.00 0.00 1.73
6546 8452 7.421530 TGATGTTCAGTGAACTAAGTTTAGC 57.578 36.000 30.69 15.68 42.39 3.09
6549 8455 7.865706 AGTTGATGTTCAGTGAACTAAGTTT 57.134 32.000 30.69 13.87 42.39 2.66
6550 8456 7.552687 TCAAGTTGATGTTCAGTGAACTAAGTT 59.447 33.333 30.69 25.45 42.39 2.66
6568 8474 4.634004 ACATTGTCGTTGAACTCAAGTTGA 59.366 37.500 5.25 5.25 38.56 3.18
6602 8510 2.620251 TTGGTGACTGACTTGACTGG 57.380 50.000 0.00 0.00 0.00 4.00
6604 8512 2.505819 ACCTTTGGTGACTGACTTGACT 59.494 45.455 0.00 0.00 32.98 3.41
6605 8513 2.872858 GACCTTTGGTGACTGACTTGAC 59.127 50.000 0.00 0.00 35.25 3.18
6606 8514 2.158813 GGACCTTTGGTGACTGACTTGA 60.159 50.000 0.00 0.00 35.25 3.02
6607 8515 2.222027 GGACCTTTGGTGACTGACTTG 58.778 52.381 0.00 0.00 35.25 3.16
6608 8516 1.202651 CGGACCTTTGGTGACTGACTT 60.203 52.381 0.00 0.00 35.25 3.01
6767 8679 3.605749 CTTGGTCATGGTCGGCGGT 62.606 63.158 7.21 0.00 0.00 5.68
6909 8821 2.423660 CCTAGATTCCTCTCCTCACGGT 60.424 54.545 0.00 0.00 32.66 4.83
6914 8826 3.495434 TCGACCTAGATTCCTCTCCTC 57.505 52.381 0.00 0.00 32.66 3.71
6921 8833 3.748568 GGAATTGCATCGACCTAGATTCC 59.251 47.826 11.32 11.32 35.71 3.01
6952 8864 6.690530 CATGTTTTGTATGGTCCTTGTCATT 58.309 36.000 0.00 0.00 0.00 2.57
6955 8868 4.485163 GCATGTTTTGTATGGTCCTTGTC 58.515 43.478 0.00 0.00 0.00 3.18
6966 8879 5.186256 TCCTTCATAGGGCATGTTTTGTA 57.814 39.130 0.00 0.00 42.26 2.41
6977 8890 8.423906 ACTGTATGTAGTATTCCTTCATAGGG 57.576 38.462 0.00 0.00 42.26 3.53
6994 8907 6.488006 CGGGTTAGGTATGTACTACTGTATGT 59.512 42.308 0.00 0.00 0.00 2.29
6995 8908 6.712095 TCGGGTTAGGTATGTACTACTGTATG 59.288 42.308 0.00 0.00 0.00 2.39
6996 8909 6.841601 TCGGGTTAGGTATGTACTACTGTAT 58.158 40.000 0.00 0.00 0.00 2.29
6997 8910 6.247229 TCGGGTTAGGTATGTACTACTGTA 57.753 41.667 0.00 0.00 0.00 2.74
6998 8911 5.116084 TCGGGTTAGGTATGTACTACTGT 57.884 43.478 0.00 0.00 0.00 3.55
6999 8912 5.106791 CGATCGGGTTAGGTATGTACTACTG 60.107 48.000 7.38 0.00 0.00 2.74
7000 8913 4.999950 CGATCGGGTTAGGTATGTACTACT 59.000 45.833 7.38 0.00 0.00 2.57
7001 8914 4.378874 GCGATCGGGTTAGGTATGTACTAC 60.379 50.000 18.30 0.00 0.00 2.73
7002 8915 3.753272 GCGATCGGGTTAGGTATGTACTA 59.247 47.826 18.30 0.00 0.00 1.82
7003 8916 2.555757 GCGATCGGGTTAGGTATGTACT 59.444 50.000 18.30 0.00 0.00 2.73
7004 8917 2.352127 GGCGATCGGGTTAGGTATGTAC 60.352 54.545 18.30 0.00 0.00 2.90
7005 8918 1.888512 GGCGATCGGGTTAGGTATGTA 59.111 52.381 18.30 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.