Multiple sequence alignment - TraesCS2D01G507100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G507100 chr2D 100.000 4818 0 0 1 4818 600971678 600976495 0.000000e+00 8898
1 TraesCS2D01G507100 chr2D 99.012 405 4 0 407 811 509945681 509945277 0.000000e+00 726
2 TraesCS2D01G507100 chr2D 98.148 378 7 0 1 378 509946053 509945676 0.000000e+00 660
3 TraesCS2D01G507100 chr2A 92.589 3036 151 36 902 3898 734343766 734346766 0.000000e+00 4292
4 TraesCS2D01G507100 chr2A 95.747 917 34 3 3903 4818 734347104 734348016 0.000000e+00 1472
5 TraesCS2D01G507100 chr4D 97.914 815 15 2 1 814 344375714 344374901 0.000000e+00 1410
6 TraesCS2D01G507100 chr7D 97.891 806 17 0 1 806 135782476 135783281 0.000000e+00 1395
7 TraesCS2D01G507100 chr3A 90.232 819 45 4 15 806 20312346 20311536 0.000000e+00 1037
8 TraesCS2D01G507100 chr5B 89.212 825 65 13 1 806 473809694 473808875 0.000000e+00 1009
9 TraesCS2D01G507100 chr7A 88.902 829 59 12 1 802 709350888 709350066 0.000000e+00 990
10 TraesCS2D01G507100 chr2B 86.354 938 80 22 2971 3898 730997784 730998683 0.000000e+00 979
11 TraesCS2D01G507100 chr2B 88.228 841 64 20 950 1780 730996064 730996879 0.000000e+00 972
12 TraesCS2D01G507100 chr2B 91.298 701 41 9 4119 4815 730999800 731000484 0.000000e+00 939
13 TraesCS2D01G507100 chr1A 89.291 719 48 4 116 807 337450539 337449823 0.000000e+00 874
14 TraesCS2D01G507100 chr7B 86.421 788 51 27 1 760 595387460 595388219 0.000000e+00 811
15 TraesCS2D01G507100 chr4A 88.384 594 41 3 239 806 661004049 661004640 0.000000e+00 689
16 TraesCS2D01G507100 chr4A 89.712 243 22 1 1 243 660992143 660992382 1.680000e-79 307
17 TraesCS2D01G507100 chr6B 82.852 589 49 23 195 756 444318684 444318121 9.380000e-132 481
18 TraesCS2D01G507100 chr6B 87.339 387 24 10 421 807 444318117 444317756 2.070000e-113 420


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G507100 chr2D 600971678 600976495 4817 False 8898.000000 8898 100.000000 1 4818 1 chr2D.!!$F1 4817
1 TraesCS2D01G507100 chr2D 509945277 509946053 776 True 693.000000 726 98.580000 1 811 2 chr2D.!!$R1 810
2 TraesCS2D01G507100 chr2A 734343766 734348016 4250 False 2882.000000 4292 94.168000 902 4818 2 chr2A.!!$F1 3916
3 TraesCS2D01G507100 chr4D 344374901 344375714 813 True 1410.000000 1410 97.914000 1 814 1 chr4D.!!$R1 813
4 TraesCS2D01G507100 chr7D 135782476 135783281 805 False 1395.000000 1395 97.891000 1 806 1 chr7D.!!$F1 805
5 TraesCS2D01G507100 chr3A 20311536 20312346 810 True 1037.000000 1037 90.232000 15 806 1 chr3A.!!$R1 791
6 TraesCS2D01G507100 chr5B 473808875 473809694 819 True 1009.000000 1009 89.212000 1 806 1 chr5B.!!$R1 805
7 TraesCS2D01G507100 chr7A 709350066 709350888 822 True 990.000000 990 88.902000 1 802 1 chr7A.!!$R1 801
8 TraesCS2D01G507100 chr2B 730996064 731000484 4420 False 963.333333 979 88.626667 950 4815 3 chr2B.!!$F1 3865
9 TraesCS2D01G507100 chr1A 337449823 337450539 716 True 874.000000 874 89.291000 116 807 1 chr1A.!!$R1 691
10 TraesCS2D01G507100 chr7B 595387460 595388219 759 False 811.000000 811 86.421000 1 760 1 chr7B.!!$F1 759
11 TraesCS2D01G507100 chr4A 661004049 661004640 591 False 689.000000 689 88.384000 239 806 1 chr4A.!!$F2 567
12 TraesCS2D01G507100 chr6B 444317756 444318684 928 True 450.500000 481 85.095500 195 807 2 chr6B.!!$R1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
980 1332 2.032528 CAGTGACACGCCACCCAT 59.967 61.111 0.0 0.00 37.76 4.00 F
1377 1730 0.688087 GGGAGGACGAGAAGATGGGT 60.688 60.000 0.0 0.00 0.00 4.51 F
2039 2431 0.108329 TAACCAGTAAGCAGGCTCGC 60.108 55.000 0.0 1.36 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 2412 0.108329 GCGAGCCTGCTTACTGGTTA 60.108 55.0 0.00 0.0 37.23 2.85 R
2353 2754 0.813821 GCTGCCAAATGACCTTCTCC 59.186 55.0 0.00 0.0 0.00 3.71 R
3901 4368 0.114954 ACCTACGTAGTGTTGGGGGA 59.885 55.0 20.73 0.0 46.38 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
404 433 2.199535 CCAAGGCCATGATCCCCC 59.800 66.667 10.18 0.00 0.00 5.40
540 861 2.739885 TGTGAAATGCAAAATCGGGG 57.260 45.000 0.00 0.00 0.00 5.73
827 1178 9.607333 AGAGAAGAGAAGAGATAGAGATAGAGA 57.393 37.037 0.00 0.00 0.00 3.10
834 1185 9.745018 AGAAGAGATAGAGATAGAGAAATCAGG 57.255 37.037 0.00 0.00 0.00 3.86
835 1186 8.884124 AAGAGATAGAGATAGAGAAATCAGGG 57.116 38.462 0.00 0.00 0.00 4.45
836 1187 8.000171 AGAGATAGAGATAGAGAAATCAGGGT 58.000 38.462 0.00 0.00 0.00 4.34
837 1188 7.890127 AGAGATAGAGATAGAGAAATCAGGGTG 59.110 40.741 0.00 0.00 0.00 4.61
838 1189 7.534852 AGATAGAGATAGAGAAATCAGGGTGT 58.465 38.462 0.00 0.00 0.00 4.16
839 1190 8.010105 AGATAGAGATAGAGAAATCAGGGTGTT 58.990 37.037 0.00 0.00 0.00 3.32
840 1191 9.303116 GATAGAGATAGAGAAATCAGGGTGTTA 57.697 37.037 0.00 0.00 0.00 2.41
841 1192 9.836179 ATAGAGATAGAGAAATCAGGGTGTTAT 57.164 33.333 0.00 0.00 0.00 1.89
842 1193 8.560124 AGAGATAGAGAAATCAGGGTGTTATT 57.440 34.615 0.00 0.00 0.00 1.40
843 1194 8.428063 AGAGATAGAGAAATCAGGGTGTTATTG 58.572 37.037 0.00 0.00 0.00 1.90
844 1195 8.324191 AGATAGAGAAATCAGGGTGTTATTGA 57.676 34.615 0.00 0.00 0.00 2.57
845 1196 8.772250 AGATAGAGAAATCAGGGTGTTATTGAA 58.228 33.333 0.00 0.00 0.00 2.69
846 1197 9.566432 GATAGAGAAATCAGGGTGTTATTGAAT 57.434 33.333 0.00 0.00 0.00 2.57
847 1198 9.927081 ATAGAGAAATCAGGGTGTTATTGAATT 57.073 29.630 0.00 0.00 0.00 2.17
848 1199 8.286191 AGAGAAATCAGGGTGTTATTGAATTC 57.714 34.615 0.00 0.00 33.18 2.17
849 1200 8.112183 AGAGAAATCAGGGTGTTATTGAATTCT 58.888 33.333 7.05 4.27 41.38 2.40
850 1201 8.655935 AGAAATCAGGGTGTTATTGAATTCTT 57.344 30.769 7.05 0.00 37.65 2.52
851 1202 9.093458 AGAAATCAGGGTGTTATTGAATTCTTT 57.907 29.630 7.05 0.00 37.65 2.52
852 1203 9.358872 GAAATCAGGGTGTTATTGAATTCTTTC 57.641 33.333 7.05 0.00 31.33 2.62
853 1204 8.655935 AATCAGGGTGTTATTGAATTCTTTCT 57.344 30.769 7.05 0.00 32.78 2.52
854 1205 9.753674 AATCAGGGTGTTATTGAATTCTTTCTA 57.246 29.630 7.05 0.00 32.78 2.10
855 1206 9.753674 ATCAGGGTGTTATTGAATTCTTTCTAA 57.246 29.630 7.05 0.00 32.78 2.10
856 1207 9.581289 TCAGGGTGTTATTGAATTCTTTCTAAA 57.419 29.630 7.05 0.00 32.78 1.85
857 1208 9.626045 CAGGGTGTTATTGAATTCTTTCTAAAC 57.374 33.333 7.05 3.93 32.78 2.01
858 1209 9.362151 AGGGTGTTATTGAATTCTTTCTAAACA 57.638 29.630 7.05 6.22 31.82 2.83
859 1210 9.974980 GGGTGTTATTGAATTCTTTCTAAACAA 57.025 29.630 7.05 0.00 33.94 2.83
876 1227 8.524870 TCTAAACAAACAGAACTTATACGTCC 57.475 34.615 0.00 0.00 0.00 4.79
877 1228 5.834239 AACAAACAGAACTTATACGTCCG 57.166 39.130 0.00 0.00 0.00 4.79
878 1229 4.874970 ACAAACAGAACTTATACGTCCGT 58.125 39.130 0.00 0.00 0.00 4.69
879 1230 4.682860 ACAAACAGAACTTATACGTCCGTG 59.317 41.667 1.98 0.00 0.00 4.94
880 1231 3.498927 ACAGAACTTATACGTCCGTGG 57.501 47.619 1.98 0.00 0.00 4.94
881 1232 2.165030 ACAGAACTTATACGTCCGTGGG 59.835 50.000 1.98 0.00 0.00 4.61
882 1233 2.424601 CAGAACTTATACGTCCGTGGGA 59.575 50.000 1.98 0.00 0.00 4.37
883 1234 3.067742 CAGAACTTATACGTCCGTGGGAT 59.932 47.826 1.98 0.00 32.73 3.85
884 1235 3.703052 AGAACTTATACGTCCGTGGGATT 59.297 43.478 1.98 0.00 32.73 3.01
885 1236 4.161001 AGAACTTATACGTCCGTGGGATTT 59.839 41.667 1.98 0.00 32.73 2.17
886 1237 4.050852 ACTTATACGTCCGTGGGATTTC 57.949 45.455 1.98 0.00 32.73 2.17
887 1238 3.181472 ACTTATACGTCCGTGGGATTTCC 60.181 47.826 1.98 0.00 32.73 3.13
947 1299 6.155827 CCATCGAAAATCAAGTGCCTAAAAA 58.844 36.000 0.00 0.00 0.00 1.94
950 1302 4.684242 CGAAAATCAAGTGCCTAAAAACCC 59.316 41.667 0.00 0.00 0.00 4.11
952 1304 5.622346 AAATCAAGTGCCTAAAAACCCAA 57.378 34.783 0.00 0.00 0.00 4.12
954 1306 3.904717 TCAAGTGCCTAAAAACCCAAGA 58.095 40.909 0.00 0.00 0.00 3.02
980 1332 2.032528 CAGTGACACGCCACCCAT 59.967 61.111 0.00 0.00 37.76 4.00
1007 1359 3.651386 ATCCCCCACCGGTCCATCA 62.651 63.158 2.59 0.00 0.00 3.07
1377 1730 0.688087 GGGAGGACGAGAAGATGGGT 60.688 60.000 0.00 0.00 0.00 4.51
1436 1789 4.170062 CGCGCTCGTCGGAGGTAA 62.170 66.667 5.56 0.00 40.80 2.85
1437 1790 2.578981 GCGCTCGTCGGAGGTAAC 60.579 66.667 0.00 0.00 40.80 2.50
1438 1791 2.277120 CGCTCGTCGGAGGTAACG 60.277 66.667 0.00 0.00 40.80 3.18
1439 1792 2.743752 CGCTCGTCGGAGGTAACGA 61.744 63.158 0.00 0.00 44.91 3.85
1451 1804 2.678934 TAACGAGCGCCACCTCCT 60.679 61.111 2.29 0.00 0.00 3.69
1458 1811 2.391389 GCGCCACCTCCTTTCTTCG 61.391 63.158 0.00 0.00 0.00 3.79
1462 1815 2.007547 GCCACCTCCTTTCTTCGTAGC 61.008 57.143 0.00 0.00 0.00 3.58
1465 1818 1.891150 ACCTCCTTTCTTCGTAGCGAA 59.109 47.619 3.93 3.93 43.75 4.70
1466 1819 2.260481 CCTCCTTTCTTCGTAGCGAAC 58.740 52.381 0.00 0.00 41.05 3.95
1475 1828 3.183976 TCTTCGTAGCGAACTAGCGATAG 59.816 47.826 6.08 6.08 41.05 2.08
1476 1829 2.747436 TCGTAGCGAACTAGCGATAGA 58.253 47.619 15.85 0.00 43.00 1.98
1527 1880 8.559536 AGTATAGTATTCATGTGCGAATTTTGG 58.440 33.333 0.00 0.00 36.92 3.28
1530 1883 2.634982 TCATGTGCGAATTTTGGCTC 57.365 45.000 0.00 0.00 32.75 4.70
1549 1904 6.513180 TGGCTCTTCTTTATCAGTATAACCG 58.487 40.000 0.00 0.00 0.00 4.44
1560 1915 4.362279 TCAGTATAACCGTTATTGTCCGC 58.638 43.478 9.05 0.00 0.00 5.54
1575 1930 2.242572 CCGCGTGATCCTGCTGATG 61.243 63.158 4.92 0.00 32.41 3.07
1577 1932 2.879070 GCGTGATCCTGCTGATGCG 61.879 63.158 0.00 0.01 43.34 4.73
1591 1946 2.606725 CTGATGCGGAAGTCTGATTCAC 59.393 50.000 0.00 0.00 0.00 3.18
1612 1969 2.673368 CGTAGAAGGTCAAATGGCAGAC 59.327 50.000 0.00 0.00 0.00 3.51
1619 1976 2.079925 GTCAAATGGCAGACTGGACTC 58.920 52.381 4.26 0.00 0.00 3.36
1647 2005 1.068127 CTGGCATTTTAGCTGATGGCC 59.932 52.381 21.74 16.59 45.24 5.36
1686 2044 8.410141 CCAGTTTGTTAAACCACTCTTATTTCA 58.590 33.333 1.14 0.00 42.34 2.69
1700 2058 7.221452 CACTCTTATTTCATGGCTGCATTTTAC 59.779 37.037 0.50 0.00 0.00 2.01
1723 2087 7.859325 ACGCAAGATTACACCTTTTATGTAT 57.141 32.000 0.00 0.00 43.62 2.29
1832 2216 6.726379 TGTTATCAGTTGATAATGGAACCCA 58.274 36.000 15.43 6.47 45.45 4.51
1833 2217 7.178573 TGTTATCAGTTGATAATGGAACCCAA 58.821 34.615 15.43 0.00 45.45 4.12
1844 2228 2.324541 TGGAACCCAATCCAGTTTTGG 58.675 47.619 0.00 0.00 44.52 3.28
1910 2294 6.316390 CCCAGTATTGTGTAAGACTCCATTTC 59.684 42.308 0.00 0.00 36.27 2.17
1933 2320 4.383010 CCTTAATGAAAATGGGCCCAAGAC 60.383 45.833 32.58 20.32 0.00 3.01
2039 2431 0.108329 TAACCAGTAAGCAGGCTCGC 60.108 55.000 0.00 1.36 0.00 5.03
2075 2467 9.454859 CTTGATTACTCTGTTCCTCCTTTAATT 57.545 33.333 0.00 0.00 0.00 1.40
2206 2607 3.418047 GTGCCCTCACTTAAAGGCTTAA 58.582 45.455 0.00 0.00 45.94 1.85
2282 2683 4.520492 AGTGGTTGGCTTTATTCAACAGAG 59.480 41.667 8.19 0.00 43.44 3.35
2321 2722 6.982724 TCATAATAACAGAGCTGTGTCTGATG 59.017 38.462 17.91 15.29 46.02 3.07
2340 2741 8.677300 GTCTGATGTCTTTGGCATTTAGATTTA 58.323 33.333 0.00 0.00 0.00 1.40
2432 2833 6.195600 ACTCTCCCTTTATGGTGTTGTTTA 57.804 37.500 0.00 0.00 0.00 2.01
2434 2835 6.659242 ACTCTCCCTTTATGGTGTTGTTTATG 59.341 38.462 0.00 0.00 0.00 1.90
2444 2848 2.228822 GTGTTGTTTATGGACCCTGCTG 59.771 50.000 0.00 0.00 0.00 4.41
2480 2884 5.758296 GTGCATATCGGAGTCAAATTCCTTA 59.242 40.000 0.00 0.00 32.34 2.69
2489 2893 3.507622 AGTCAAATTCCTTAGCAAGTGGC 59.492 43.478 0.00 0.00 45.30 5.01
2529 2933 4.690280 GGGTTATTGTGGCATTTGAACTTG 59.310 41.667 0.00 0.00 0.00 3.16
2539 2943 5.700832 TGGCATTTGAACTTGTGACTACTAG 59.299 40.000 0.00 0.00 36.03 2.57
2543 2947 7.201565 GCATTTGAACTTGTGACTACTAGATCC 60.202 40.741 0.00 0.00 33.03 3.36
2579 2986 7.224557 CCATTTTGTTACCTTTTTGTCCTTGAG 59.775 37.037 0.00 0.00 0.00 3.02
2593 3000 7.672983 TTGTCCTTGAGAGTTAAGCTAAATG 57.327 36.000 0.00 0.00 0.00 2.32
2594 3001 7.004555 TGTCCTTGAGAGTTAAGCTAAATGA 57.995 36.000 0.00 0.00 0.00 2.57
2596 3003 8.103305 TGTCCTTGAGAGTTAAGCTAAATGAAT 58.897 33.333 0.00 0.00 0.00 2.57
2715 3130 1.671328 GAGCGAAAATAGAACTGGGCC 59.329 52.381 0.00 0.00 0.00 5.80
2724 3139 1.745489 GAACTGGGCCGTGCTTAGG 60.745 63.158 0.00 0.00 0.00 2.69
2731 3146 1.173913 GGCCGTGCTTAGGAAATTGT 58.826 50.000 0.00 0.00 0.00 2.71
2738 3153 6.238648 GCCGTGCTTAGGAAATTGTATGTATT 60.239 38.462 0.00 0.00 0.00 1.89
2739 3154 7.132213 CCGTGCTTAGGAAATTGTATGTATTG 58.868 38.462 0.00 0.00 0.00 1.90
2741 3156 7.850982 CGTGCTTAGGAAATTGTATGTATTGAC 59.149 37.037 0.00 0.00 0.00 3.18
2797 3212 2.691409 TGTCCATAGTGCTAAGTGCC 57.309 50.000 0.00 0.00 42.00 5.01
2879 3297 7.248976 AGTAGGATATCATGAACACCCAGATA 58.751 38.462 0.00 0.00 0.00 1.98
2889 3307 3.073274 ACACCCAGATACCAGAAAAGC 57.927 47.619 0.00 0.00 0.00 3.51
2908 3326 2.171003 GCTGGAAGTGGTTGGCTTTAT 58.829 47.619 0.00 0.00 35.30 1.40
2919 3337 3.251487 GGTTGGCTTTATACAACACACGT 59.749 43.478 9.39 0.00 46.56 4.49
2943 3362 9.638300 CGTGTATTTTTATTCATAACAGAGCTC 57.362 33.333 5.27 5.27 0.00 4.09
2962 3387 8.726988 CAGAGCTCTAGTGTTATCTTAGTATCC 58.273 40.741 17.75 0.00 0.00 2.59
3077 3531 8.118893 GTTATGCAACCTTTTACAGCATTATG 57.881 34.615 3.41 0.00 42.76 1.90
3144 3603 5.163364 TGGGAAGTTGCAACATTTACAACAT 60.163 36.000 30.11 3.54 44.77 2.71
3159 3618 3.380486 CAACATCTGATCGTTGTGCTC 57.620 47.619 17.36 0.00 38.14 4.26
3207 3666 2.354805 GGGTTACATGAAGAGCGGAAGT 60.355 50.000 0.00 0.00 0.00 3.01
3213 3672 3.244215 ACATGAAGAGCGGAAGTCAGAAA 60.244 43.478 0.00 0.00 0.00 2.52
3217 3676 2.966050 AGAGCGGAAGTCAGAAATCAC 58.034 47.619 0.00 0.00 0.00 3.06
3314 3773 1.888512 GGCGATCGGGTTAGGTATGTA 59.111 52.381 18.30 0.00 0.00 2.29
3315 3774 2.352127 GGCGATCGGGTTAGGTATGTAC 60.352 54.545 18.30 0.00 0.00 2.90
3316 3775 2.555757 GCGATCGGGTTAGGTATGTACT 59.444 50.000 18.30 0.00 0.00 2.73
3317 3776 3.753272 GCGATCGGGTTAGGTATGTACTA 59.247 47.826 18.30 0.00 0.00 1.82
3318 3777 4.378874 GCGATCGGGTTAGGTATGTACTAC 60.379 50.000 18.30 0.00 0.00 2.73
3319 3778 4.999950 CGATCGGGTTAGGTATGTACTACT 59.000 45.833 7.38 0.00 0.00 2.57
3320 3779 5.106791 CGATCGGGTTAGGTATGTACTACTG 60.107 48.000 7.38 0.00 0.00 2.74
3342 3801 8.423906 ACTGTATGTAGTATTCCTTCATAGGG 57.576 38.462 0.00 0.00 42.26 3.53
3353 3812 5.186256 TCCTTCATAGGGCATGTTTTGTA 57.814 39.130 0.00 0.00 42.26 2.41
3364 3823 4.485163 GCATGTTTTGTATGGTCCTTGTC 58.515 43.478 0.00 0.00 0.00 3.18
3398 3858 3.748568 GGAATTGCATCGACCTAGATTCC 59.251 47.826 11.32 11.32 35.71 3.01
3405 3865 3.495434 TCGACCTAGATTCCTCTCCTC 57.505 52.381 0.00 0.00 32.66 3.71
3410 3870 2.423660 CCTAGATTCCTCTCCTCACGGT 60.424 54.545 0.00 0.00 32.66 4.83
3552 4012 3.605749 CTTGGTCATGGTCGGCGGT 62.606 63.158 7.21 0.00 0.00 5.68
3711 4175 1.202651 CGGACCTTTGGTGACTGACTT 60.203 52.381 0.00 0.00 35.25 3.01
3712 4176 2.222027 GGACCTTTGGTGACTGACTTG 58.778 52.381 0.00 0.00 35.25 3.16
3713 4177 2.158813 GGACCTTTGGTGACTGACTTGA 60.159 50.000 0.00 0.00 35.25 3.02
3714 4178 2.872858 GACCTTTGGTGACTGACTTGAC 59.127 50.000 0.00 0.00 35.25 3.18
3715 4179 2.505819 ACCTTTGGTGACTGACTTGACT 59.494 45.455 0.00 0.00 32.98 3.41
3716 4180 2.874701 CCTTTGGTGACTGACTTGACTG 59.125 50.000 0.00 0.00 0.00 3.51
3717 4181 2.620251 TTGGTGACTGACTTGACTGG 57.380 50.000 0.00 0.00 0.00 4.00
3769 4235 7.552687 TCAAGTTGATGTTCAGTGAACTAAGTT 59.447 33.333 30.69 25.45 42.39 2.66
3770 4236 7.865706 AGTTGATGTTCAGTGAACTAAGTTT 57.134 32.000 30.69 13.87 42.39 2.66
3773 4239 7.421530 TGATGTTCAGTGAACTAAGTTTAGC 57.578 36.000 30.69 15.68 42.39 3.09
3803 4269 3.004734 GGCGGATGGTGGAAATCAATAAG 59.995 47.826 0.00 0.00 0.00 1.73
3811 4277 7.452880 TGGTGGAAATCAATAAGTTTGAGAG 57.547 36.000 0.00 0.00 0.00 3.20
3853 4320 9.202273 GTGATCTTATAGCAGAAGTTTCTATGG 57.798 37.037 0.00 0.00 35.34 2.74
3873 4340 3.318275 TGGCCGTGTTGCACTTATTTTTA 59.682 39.130 0.00 0.00 31.34 1.52
3909 5575 3.933861 AGTTCATGATACTCCCCCAAC 57.066 47.619 0.00 0.00 0.00 3.77
3986 5652 2.721231 GGTTCGCTGCTGCACAAA 59.279 55.556 16.29 3.86 39.64 2.83
4016 5682 6.921857 ACATCAGAAAATTCAGTTTGCTTCTG 59.078 34.615 6.08 6.08 33.13 3.02
4024 5690 1.102978 AGTTTGCTTCTGCCACGTTT 58.897 45.000 0.00 0.00 38.71 3.60
4036 5702 1.197721 GCCACGTTTCAGGAACATCAG 59.802 52.381 0.00 0.00 38.18 2.90
4049 5715 8.010733 TCAGGAACATCAGAAAATTCAGTTTT 57.989 30.769 0.00 0.00 42.56 2.43
4050 5716 7.922278 TCAGGAACATCAGAAAATTCAGTTTTG 59.078 33.333 0.00 0.00 40.04 2.44
4051 5717 6.703165 AGGAACATCAGAAAATTCAGTTTTGC 59.297 34.615 0.00 0.00 40.04 3.68
4052 5718 6.346040 GGAACATCAGAAAATTCAGTTTTGCG 60.346 38.462 0.00 0.00 40.04 4.85
4080 5746 3.077556 GCAGGGAGCCGGAAGAGA 61.078 66.667 5.05 0.00 37.23 3.10
4150 5831 3.149196 TCTCAGATTGCACTGAAAACCC 58.851 45.455 8.24 0.00 44.62 4.11
4293 5974 0.094730 GCACGACAGCCACGATTTAC 59.905 55.000 0.00 0.00 34.70 2.01
4294 5975 1.424403 CACGACAGCCACGATTTACA 58.576 50.000 0.00 0.00 34.70 2.41
4295 5976 1.999735 CACGACAGCCACGATTTACAT 59.000 47.619 0.00 0.00 34.70 2.29
4334 6015 1.445582 CAGTACGGTTCCGCAGACC 60.446 63.158 11.32 0.00 0.00 3.85
4514 6198 2.040412 AGGGCCGTCTTTCTTCTTTCAT 59.960 45.455 0.00 0.00 0.00 2.57
4645 6329 5.559148 AGGATCATTCCATAGTCAGTTCC 57.441 43.478 0.00 0.00 45.30 3.62
4654 6338 1.279496 TAGTCAGTTCCAGCCAGCAT 58.721 50.000 0.00 0.00 0.00 3.79
4722 6407 0.318120 AAAAAGGTTGGCCATCGCAG 59.682 50.000 6.09 0.00 37.19 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
540 861 1.134401 TCTCGCAATCCACTCAATCCC 60.134 52.381 0.00 0.00 0.00 3.85
543 864 5.297776 CCTTTAATCTCGCAATCCACTCAAT 59.702 40.000 0.00 0.00 0.00 2.57
812 1163 7.669722 ACACCCTGATTTCTCTATCTCTATCTC 59.330 40.741 0.00 0.00 0.00 2.75
813 1164 7.534852 ACACCCTGATTTCTCTATCTCTATCT 58.465 38.462 0.00 0.00 0.00 1.98
814 1165 7.775053 ACACCCTGATTTCTCTATCTCTATC 57.225 40.000 0.00 0.00 0.00 2.08
815 1166 9.836179 ATAACACCCTGATTTCTCTATCTCTAT 57.164 33.333 0.00 0.00 0.00 1.98
816 1167 9.661954 AATAACACCCTGATTTCTCTATCTCTA 57.338 33.333 0.00 0.00 0.00 2.43
817 1168 8.428063 CAATAACACCCTGATTTCTCTATCTCT 58.572 37.037 0.00 0.00 0.00 3.10
818 1169 8.424918 TCAATAACACCCTGATTTCTCTATCTC 58.575 37.037 0.00 0.00 0.00 2.75
819 1170 8.324191 TCAATAACACCCTGATTTCTCTATCT 57.676 34.615 0.00 0.00 0.00 1.98
820 1171 8.964476 TTCAATAACACCCTGATTTCTCTATC 57.036 34.615 0.00 0.00 0.00 2.08
821 1172 9.927081 AATTCAATAACACCCTGATTTCTCTAT 57.073 29.630 0.00 0.00 0.00 1.98
822 1173 9.396022 GAATTCAATAACACCCTGATTTCTCTA 57.604 33.333 0.00 0.00 31.46 2.43
823 1174 8.112183 AGAATTCAATAACACCCTGATTTCTCT 58.888 33.333 8.44 0.00 36.06 3.10
824 1175 8.286191 AGAATTCAATAACACCCTGATTTCTC 57.714 34.615 8.44 0.00 36.06 2.87
825 1176 8.655935 AAGAATTCAATAACACCCTGATTTCT 57.344 30.769 8.44 0.00 39.59 2.52
826 1177 9.358872 GAAAGAATTCAATAACACCCTGATTTC 57.641 33.333 8.44 0.34 35.54 2.17
827 1178 9.093458 AGAAAGAATTCAATAACACCCTGATTT 57.907 29.630 8.44 0.00 38.06 2.17
828 1179 8.655935 AGAAAGAATTCAATAACACCCTGATT 57.344 30.769 8.44 0.00 38.06 2.57
829 1180 9.753674 TTAGAAAGAATTCAATAACACCCTGAT 57.246 29.630 8.44 0.00 38.06 2.90
830 1181 9.581289 TTTAGAAAGAATTCAATAACACCCTGA 57.419 29.630 8.44 0.00 38.06 3.86
831 1182 9.626045 GTTTAGAAAGAATTCAATAACACCCTG 57.374 33.333 8.44 0.00 38.06 4.45
832 1183 9.362151 TGTTTAGAAAGAATTCAATAACACCCT 57.638 29.630 8.44 0.00 38.06 4.34
833 1184 9.974980 TTGTTTAGAAAGAATTCAATAACACCC 57.025 29.630 8.44 0.00 38.06 4.61
850 1201 8.981647 GGACGTATAAGTTCTGTTTGTTTAGAA 58.018 33.333 0.00 0.00 0.00 2.10
851 1202 7.326789 CGGACGTATAAGTTCTGTTTGTTTAGA 59.673 37.037 0.00 0.00 0.00 2.10
852 1203 7.115378 ACGGACGTATAAGTTCTGTTTGTTTAG 59.885 37.037 0.00 0.00 0.00 1.85
853 1204 6.922957 ACGGACGTATAAGTTCTGTTTGTTTA 59.077 34.615 0.00 0.00 0.00 2.01
854 1205 5.754890 ACGGACGTATAAGTTCTGTTTGTTT 59.245 36.000 0.00 0.00 0.00 2.83
855 1206 5.176223 CACGGACGTATAAGTTCTGTTTGTT 59.824 40.000 0.00 0.00 0.00 2.83
856 1207 4.682860 CACGGACGTATAAGTTCTGTTTGT 59.317 41.667 0.00 0.00 0.00 2.83
857 1208 4.090930 CCACGGACGTATAAGTTCTGTTTG 59.909 45.833 0.00 0.00 0.00 2.93
858 1209 4.240096 CCACGGACGTATAAGTTCTGTTT 58.760 43.478 0.00 0.00 0.00 2.83
859 1210 3.367703 CCCACGGACGTATAAGTTCTGTT 60.368 47.826 0.00 0.00 0.00 3.16
860 1211 2.165030 CCCACGGACGTATAAGTTCTGT 59.835 50.000 0.00 0.00 0.00 3.41
861 1212 2.424601 TCCCACGGACGTATAAGTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
862 1213 2.726821 TCCCACGGACGTATAAGTTCT 58.273 47.619 0.00 0.00 0.00 3.01
863 1214 3.722728 ATCCCACGGACGTATAAGTTC 57.277 47.619 0.00 0.00 32.98 3.01
864 1215 4.436332 GAAATCCCACGGACGTATAAGTT 58.564 43.478 0.00 0.00 32.98 2.66
865 1216 3.181472 GGAAATCCCACGGACGTATAAGT 60.181 47.826 0.00 0.00 32.98 2.24
866 1217 3.387397 GGAAATCCCACGGACGTATAAG 58.613 50.000 0.00 0.00 32.98 1.73
867 1218 3.457610 GGAAATCCCACGGACGTATAA 57.542 47.619 0.00 0.00 32.98 0.98
891 1242 3.815348 TGTTTTCTCAAACGCGCCACG 62.815 52.381 5.73 0.00 44.76 4.94
892 1243 0.248296 TGTTTTCTCAAACGCGCCAC 60.248 50.000 5.73 0.00 44.76 5.01
893 1244 0.028770 CTGTTTTCTCAAACGCGCCA 59.971 50.000 5.73 0.00 44.76 5.69
894 1245 1.268778 GCTGTTTTCTCAAACGCGCC 61.269 55.000 5.73 0.00 44.76 6.53
895 1246 2.124827 GCTGTTTTCTCAAACGCGC 58.875 52.632 5.73 0.00 44.76 6.86
897 1248 1.663494 CTCGCTGTTTTCTCAAACGC 58.337 50.000 0.00 0.00 44.76 4.84
898 1249 1.003972 TGCTCGCTGTTTTCTCAAACG 60.004 47.619 0.00 0.00 44.76 3.60
899 1250 2.755836 TGCTCGCTGTTTTCTCAAAC 57.244 45.000 0.00 0.00 42.49 2.93
900 1251 3.773860 TTTGCTCGCTGTTTTCTCAAA 57.226 38.095 0.00 0.00 0.00 2.69
947 1299 2.369015 TGTGGGTGGGTCTTGGGT 60.369 61.111 0.00 0.00 0.00 4.51
950 1302 0.535102 GTCACTGTGGGTGGGTCTTG 60.535 60.000 8.11 0.00 45.38 3.02
952 1304 1.383943 TGTCACTGTGGGTGGGTCT 60.384 57.895 8.11 0.00 45.38 3.85
954 1306 2.915869 GTGTCACTGTGGGTGGGT 59.084 61.111 8.11 0.00 45.38 4.51
980 1332 2.618449 GGTGGGGGATTTTCCGGGA 61.618 63.158 0.00 0.00 37.43 5.14
1007 1359 0.897621 TGAGCTCGGTGATGTGATGT 59.102 50.000 9.64 0.00 0.00 3.06
1050 1402 1.037493 GGGTTTTGTGGGGTCAACTC 58.963 55.000 0.00 0.00 0.00 3.01
1051 1403 0.397957 GGGGTTTTGTGGGGTCAACT 60.398 55.000 0.00 0.00 0.00 3.16
1302 1655 4.888325 CCTCCGCCCCCAGATCCT 62.888 72.222 0.00 0.00 0.00 3.24
1326 1679 3.636231 CCCTGCGGGTCACTTCCA 61.636 66.667 11.58 0.00 38.25 3.53
1365 1718 1.826024 CCCCTCACCCATCTTCTCG 59.174 63.158 0.00 0.00 0.00 4.04
1377 1730 2.060383 CGACATGGAGAGCCCCTCA 61.060 63.158 0.00 0.00 43.76 3.86
1436 1789 3.591254 GAAAGGAGGTGGCGCTCGT 62.591 63.158 7.64 2.37 0.00 4.18
1437 1790 2.788191 AAGAAAGGAGGTGGCGCTCG 62.788 60.000 7.64 0.00 0.00 5.03
1438 1791 1.003233 AAGAAAGGAGGTGGCGCTC 60.003 57.895 7.64 0.23 0.00 5.03
1439 1792 1.003233 GAAGAAAGGAGGTGGCGCT 60.003 57.895 7.64 0.00 0.00 5.92
1451 1804 2.160219 TCGCTAGTTCGCTACGAAGAAA 59.840 45.455 2.15 0.00 46.54 2.52
1458 1811 3.165124 GCATCTATCGCTAGTTCGCTAC 58.835 50.000 0.00 0.00 0.00 3.58
1462 1815 3.544356 TCTGCATCTATCGCTAGTTCG 57.456 47.619 0.00 0.00 0.00 3.95
1465 1818 2.415224 CGCATCTGCATCTATCGCTAGT 60.415 50.000 2.72 0.00 42.21 2.57
1466 1819 2.183636 CGCATCTGCATCTATCGCTAG 58.816 52.381 2.72 0.00 42.21 3.42
1475 1828 0.527565 AAACCCAACGCATCTGCATC 59.472 50.000 2.72 0.00 42.21 3.91
1476 1829 0.244450 CAAACCCAACGCATCTGCAT 59.756 50.000 2.72 0.00 42.21 3.96
1512 1865 2.642139 AGAGCCAAAATTCGCACATG 57.358 45.000 0.00 0.00 0.00 3.21
1515 1868 2.997485 AGAAGAGCCAAAATTCGCAC 57.003 45.000 0.00 0.00 0.00 5.34
1525 1878 6.097839 ACGGTTATACTGATAAAGAAGAGCCA 59.902 38.462 0.00 0.00 29.20 4.75
1527 1880 9.694137 ATAACGGTTATACTGATAAAGAAGAGC 57.306 33.333 11.54 0.00 29.20 4.09
1546 1899 0.108520 ATCACGCGGACAATAACGGT 60.109 50.000 12.47 0.00 0.00 4.83
1549 1904 1.593006 CAGGATCACGCGGACAATAAC 59.407 52.381 12.47 0.00 0.00 1.89
1560 1915 2.242572 CCGCATCAGCAGGATCACG 61.243 63.158 0.00 0.00 42.27 4.35
1575 1930 2.159421 TCTACGTGAATCAGACTTCCGC 60.159 50.000 0.00 0.00 0.00 5.54
1577 1932 4.082136 ACCTTCTACGTGAATCAGACTTCC 60.082 45.833 0.00 0.00 33.71 3.46
1591 1946 2.673368 GTCTGCCATTTGACCTTCTACG 59.327 50.000 0.00 0.00 0.00 3.51
1612 1969 0.177604 GCCAGGATGACAGAGTCCAG 59.822 60.000 0.00 0.00 39.69 3.86
1619 1976 3.066342 CAGCTAAAATGCCAGGATGACAG 59.934 47.826 0.00 0.00 39.69 3.51
1647 2005 3.968265 ACAAACTGGGGATAATCCACTG 58.032 45.455 0.00 0.00 41.69 3.66
1686 2044 1.818060 TCTTGCGTAAAATGCAGCCAT 59.182 42.857 0.00 0.00 41.69 4.40
1700 2058 9.009327 CAAATACATAAAAGGTGTAATCTTGCG 57.991 33.333 0.00 0.00 35.84 4.85
1860 2244 2.615391 TCATCACTTACACCCCTGACA 58.385 47.619 0.00 0.00 0.00 3.58
1861 2245 3.535561 CATCATCACTTACACCCCTGAC 58.464 50.000 0.00 0.00 0.00 3.51
1910 2294 3.774216 TCTTGGGCCCATTTTCATTAAGG 59.226 43.478 29.23 0.00 0.00 2.69
2014 2406 3.195825 AGCCTGCTTACTGGTTACTACAG 59.804 47.826 0.00 0.00 41.64 2.74
2020 2412 0.108329 GCGAGCCTGCTTACTGGTTA 60.108 55.000 0.00 0.00 37.23 2.85
2039 2431 3.369147 CAGAGTAATCAAGCGAGTGTTGG 59.631 47.826 0.00 0.00 0.00 3.77
2075 2467 9.868277 CCAAATCCAAGTTTTATTGTTGCTATA 57.132 29.630 0.00 0.00 0.00 1.31
2141 2535 3.379240 CAGAAGAGCATCCTATGACACG 58.621 50.000 0.00 0.00 33.66 4.49
2206 2607 2.158755 AGCCTACACTGTGCTTTGTTCT 60.159 45.455 7.90 0.00 29.17 3.01
2347 2748 3.069443 GCCAAATGACCTTCTCCACAAAA 59.931 43.478 0.00 0.00 0.00 2.44
2349 2750 2.238521 GCCAAATGACCTTCTCCACAA 58.761 47.619 0.00 0.00 0.00 3.33
2350 2751 1.144708 TGCCAAATGACCTTCTCCACA 59.855 47.619 0.00 0.00 0.00 4.17
2351 2752 1.815003 CTGCCAAATGACCTTCTCCAC 59.185 52.381 0.00 0.00 0.00 4.02
2352 2753 1.887956 GCTGCCAAATGACCTTCTCCA 60.888 52.381 0.00 0.00 0.00 3.86
2353 2754 0.813821 GCTGCCAAATGACCTTCTCC 59.186 55.000 0.00 0.00 0.00 3.71
2354 2755 1.831580 AGCTGCCAAATGACCTTCTC 58.168 50.000 0.00 0.00 0.00 2.87
2357 2758 0.971386 CCAAGCTGCCAAATGACCTT 59.029 50.000 0.00 0.00 0.00 3.50
2358 2759 0.901580 CCCAAGCTGCCAAATGACCT 60.902 55.000 0.00 0.00 0.00 3.85
2359 2760 1.593265 CCCAAGCTGCCAAATGACC 59.407 57.895 0.00 0.00 0.00 4.02
2360 2761 1.079612 GCCCAAGCTGCCAAATGAC 60.080 57.895 0.00 0.00 35.50 3.06
2361 2762 3.379880 GCCCAAGCTGCCAAATGA 58.620 55.556 0.00 0.00 35.50 2.57
2390 2791 3.308530 AGTTAAGCGCTCAAACAATTGC 58.691 40.909 27.51 8.62 36.45 3.56
2444 2848 2.032054 CGATATGCACACACATTCCCAC 59.968 50.000 0.00 0.00 0.00 4.61
2489 2893 7.610305 ACAATAACCCCACTGAGTAATAAACAG 59.390 37.037 0.00 0.00 37.62 3.16
2494 2898 5.630539 GCCACAATAACCCCACTGAGTAATA 60.631 44.000 0.00 0.00 0.00 0.98
2550 2954 5.042463 ACAAAAAGGTAACAAAATGGGGG 57.958 39.130 0.00 0.00 41.41 5.40
2555 2959 8.073467 TCTCAAGGACAAAAAGGTAACAAAAT 57.927 30.769 0.00 0.00 41.41 1.82
2556 2960 7.177744 ACTCTCAAGGACAAAAAGGTAACAAAA 59.822 33.333 0.00 0.00 41.41 2.44
2560 2964 6.694877 AACTCTCAAGGACAAAAAGGTAAC 57.305 37.500 0.00 0.00 0.00 2.50
2561 2965 7.012989 GCTTAACTCTCAAGGACAAAAAGGTAA 59.987 37.037 0.00 0.00 0.00 2.85
2563 2967 5.299531 GCTTAACTCTCAAGGACAAAAAGGT 59.700 40.000 0.00 0.00 0.00 3.50
2564 2968 5.532779 AGCTTAACTCTCAAGGACAAAAAGG 59.467 40.000 0.00 0.00 0.00 3.11
2565 2969 6.625873 AGCTTAACTCTCAAGGACAAAAAG 57.374 37.500 0.00 0.00 0.00 2.27
2666 3080 5.888982 AAGGAGAAGTTGAGTAACCAAGA 57.111 39.130 0.00 0.00 37.52 3.02
2715 3130 7.850982 GTCAATACATACAATTTCCTAAGCACG 59.149 37.037 0.00 0.00 0.00 5.34
2724 3139 9.398170 GGCATACATGTCAATACATACAATTTC 57.602 33.333 0.00 0.00 44.70 2.17
2731 3146 7.992608 ACAGAAAGGCATACATGTCAATACATA 59.007 33.333 0.00 0.00 44.70 2.29
2738 3153 3.752747 CACACAGAAAGGCATACATGTCA 59.247 43.478 0.00 0.00 34.11 3.58
2739 3154 3.753272 ACACACAGAAAGGCATACATGTC 59.247 43.478 0.00 0.00 0.00 3.06
2741 3156 4.005650 AGACACACAGAAAGGCATACATG 58.994 43.478 0.00 0.00 0.00 3.21
2889 3307 4.331968 TGTATAAAGCCAACCACTTCCAG 58.668 43.478 0.00 0.00 0.00 3.86
2943 3362 9.669887 AGGTATCGGATACTAAGATAACACTAG 57.330 37.037 23.36 0.00 37.11 2.57
2962 3387 6.961359 TCAACAGACATAACAAAGGTATCG 57.039 37.500 0.00 0.00 0.00 2.92
3055 3509 6.153340 AGTCATAATGCTGTAAAAGGTTGCAT 59.847 34.615 0.00 0.00 44.86 3.96
3077 3531 6.415280 CAGCGTATATCAGTGTACTTTCAGTC 59.585 42.308 0.00 0.00 0.00 3.51
3098 3556 5.796935 CCAAGAACAGTCAATATTTTCAGCG 59.203 40.000 0.92 0.00 0.00 5.18
3144 3603 2.826128 AGTTAGGAGCACAACGATCAGA 59.174 45.455 0.00 0.00 0.00 3.27
3159 3618 2.832129 TCCACCAGCTACAGAAGTTAGG 59.168 50.000 0.00 0.00 0.00 2.69
3207 3666 1.612462 CCTGCAGCCAGTGATTTCTGA 60.612 52.381 8.66 0.00 37.38 3.27
3213 3672 2.996395 CCTCCTGCAGCCAGTGAT 59.004 61.111 8.66 0.00 37.38 3.06
3339 3798 2.042979 AGGACCATACAAAACATGCCCT 59.957 45.455 0.00 0.00 0.00 5.19
3342 3801 4.022416 TGACAAGGACCATACAAAACATGC 60.022 41.667 0.00 0.00 0.00 4.06
3353 3812 4.503643 CCAAGCAAAAATGACAAGGACCAT 60.504 41.667 0.00 0.00 0.00 3.55
3364 3823 4.436317 CGATGCAATTCCCAAGCAAAAATG 60.436 41.667 0.00 0.00 42.15 2.32
3405 3865 1.750193 ACATTAGGGCATCAACCGTG 58.250 50.000 0.00 0.00 0.00 4.94
3410 3870 4.322650 GCCAAGAAAACATTAGGGCATCAA 60.323 41.667 0.00 0.00 39.66 2.57
3552 4012 1.880221 CGCATAATCCCATGGGCGTAA 60.880 52.381 27.41 9.44 39.65 3.18
3651 4114 1.668751 GACAACTGCTTCGAAACACCA 59.331 47.619 0.00 0.00 0.00 4.17
3652 4115 1.940613 AGACAACTGCTTCGAAACACC 59.059 47.619 0.00 0.00 0.00 4.16
3712 4176 2.080286 ATGTAACACGACAGCCAGTC 57.920 50.000 0.00 0.00 44.02 3.51
3713 4177 2.143122 CAATGTAACACGACAGCCAGT 58.857 47.619 0.00 0.00 31.51 4.00
3714 4178 2.143122 ACAATGTAACACGACAGCCAG 58.857 47.619 0.00 0.00 31.51 4.85
3715 4179 2.139917 GACAATGTAACACGACAGCCA 58.860 47.619 0.00 0.00 31.51 4.75
3716 4180 1.126113 CGACAATGTAACACGACAGCC 59.874 52.381 0.00 0.00 31.51 4.85
3717 4181 1.790623 ACGACAATGTAACACGACAGC 59.209 47.619 0.00 0.00 31.51 4.40
3769 4235 1.271325 CCATCCGCCCATACATGCTAA 60.271 52.381 0.00 0.00 0.00 3.09
3770 4236 0.324614 CCATCCGCCCATACATGCTA 59.675 55.000 0.00 0.00 0.00 3.49
3773 4239 0.890542 CCACCATCCGCCCATACATG 60.891 60.000 0.00 0.00 0.00 3.21
3803 4269 5.163683 CCATTCACACATGATCCTCTCAAAC 60.164 44.000 0.00 0.00 37.44 2.93
3811 4277 4.458397 AGATCACCATTCACACATGATCC 58.542 43.478 0.00 0.00 44.41 3.36
3853 4320 4.542735 AGTAAAAATAAGTGCAACACGGC 58.457 39.130 0.00 0.00 41.43 5.68
3898 4365 2.621407 CCTACGTAGTGTTGGGGGAGTA 60.621 54.545 20.73 0.00 45.73 2.59
3900 4367 0.822164 CCTACGTAGTGTTGGGGGAG 59.178 60.000 20.73 0.00 45.73 4.30
3901 4368 0.114954 ACCTACGTAGTGTTGGGGGA 59.885 55.000 20.73 0.00 46.38 4.81
3909 5575 3.484886 GCGAGTACTGAACCTACGTAGTG 60.485 52.174 20.73 14.27 45.73 2.74
3986 5652 4.836125 ACTGAATTTTCTGATGTTGCGT 57.164 36.364 4.46 0.00 0.00 5.24
4016 5682 1.197721 CTGATGTTCCTGAAACGTGGC 59.802 52.381 0.00 0.00 41.02 5.01
4024 5690 7.587037 AAACTGAATTTTCTGATGTTCCTGA 57.413 32.000 4.46 0.00 0.00 3.86
4036 5702 6.806120 AACAGTACGCAAAACTGAATTTTC 57.194 33.333 14.89 0.00 45.89 2.29
4049 5715 1.276705 TCCCTGCATAAACAGTACGCA 59.723 47.619 0.00 0.00 35.83 5.24
4050 5716 1.933853 CTCCCTGCATAAACAGTACGC 59.066 52.381 0.00 0.00 35.83 4.42
4051 5717 1.933853 GCTCCCTGCATAAACAGTACG 59.066 52.381 0.00 0.00 42.31 3.67
4052 5718 2.289565 GGCTCCCTGCATAAACAGTAC 58.710 52.381 0.00 0.00 45.15 2.73
4080 5746 0.685660 GTCTTGGTTTCGGGTCTCCT 59.314 55.000 0.00 0.00 0.00 3.69
4150 5831 2.692557 TGGTTTGTTGAGGATGTTGGTG 59.307 45.455 0.00 0.00 0.00 4.17
4216 5897 2.297315 TGATATCATCTGTGCCGTCTCC 59.703 50.000 0.00 0.00 0.00 3.71
4223 5904 7.824704 AGTCGATAAATGATATCATCTGTGC 57.175 36.000 18.44 6.98 35.10 4.57
4293 5974 5.407387 TGCTATGATGAATGTGTCGATGATG 59.593 40.000 0.00 0.00 0.00 3.07
4294 5975 5.544650 TGCTATGATGAATGTGTCGATGAT 58.455 37.500 0.00 0.00 0.00 2.45
4295 5976 4.947645 TGCTATGATGAATGTGTCGATGA 58.052 39.130 0.00 0.00 0.00 2.92
4334 6015 9.651718 GTTTACTCTGTATCTGAACTTGTTTTG 57.348 33.333 0.00 0.00 0.00 2.44
4432 6116 5.165676 TGATGTGATGTTACACCGTAGAAC 58.834 41.667 0.00 0.00 39.69 3.01
4514 6198 2.438795 GGCAAGGCCCAGTAACCA 59.561 61.111 0.00 0.00 44.06 3.67
4542 6226 2.172293 GAGCATCTTCTGGGATGGAAGT 59.828 50.000 6.60 0.00 42.21 3.01
4645 6329 0.179034 GTCCTTCCCTATGCTGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
4654 6338 3.971305 TCAGTTTCACTTGTCCTTCCCTA 59.029 43.478 0.00 0.00 0.00 3.53
4722 6407 1.412387 AAAGTAACGGCGTTCTCGAC 58.588 50.000 30.35 21.06 42.36 4.20
4732 6417 9.061610 GTCATGTTTCATATGAAAAAGTAACGG 57.938 33.333 28.02 13.85 44.58 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.