Multiple sequence alignment - TraesCS2D01G506700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G506700 chr2D 100.000 4717 0 0 783 5499 600402521 600407237 0.000000e+00 8711
1 TraesCS2D01G506700 chr2D 100.000 524 0 0 1 524 600401739 600402262 0.000000e+00 968
2 TraesCS2D01G506700 chr2D 83.931 921 96 25 1162 2054 600428573 600429469 0.000000e+00 833
3 TraesCS2D01G506700 chr2D 85.078 449 47 8 4108 4551 600430418 600430851 1.820000e-119 440
4 TraesCS2D01G506700 chr2D 93.333 75 5 0 2200 2274 600429466 600429540 1.620000e-20 111
5 TraesCS2D01G506700 chr2D 93.056 72 4 1 5427 5497 373759337 373759408 2.710000e-18 104
6 TraesCS2D01G506700 chr2A 89.922 1548 93 25 3967 5494 734089723 734091227 0.000000e+00 1936
7 TraesCS2D01G506700 chr2A 89.609 1357 89 20 2200 3544 734088398 734089714 0.000000e+00 1677
8 TraesCS2D01G506700 chr2A 88.034 1287 102 30 806 2054 734087129 734088401 0.000000e+00 1476
9 TraesCS2D01G506700 chr2A 86.928 306 29 5 1 296 734074647 734074951 3.170000e-87 333
10 TraesCS2D01G506700 chr2A 87.755 196 23 1 1860 2054 734097190 734097385 1.540000e-55 228
11 TraesCS2D01G506700 chr2A 93.056 72 4 1 5427 5497 505334590 505334661 2.710000e-18 104
12 TraesCS2D01G506700 chr2B 88.077 1300 92 21 783 2054 730610173 730611437 0.000000e+00 1483
13 TraesCS2D01G506700 chr2B 92.530 656 32 8 4857 5499 730613495 730614146 0.000000e+00 924
14 TraesCS2D01G506700 chr2B 91.009 545 28 9 2526 3061 730611713 730612245 0.000000e+00 715
15 TraesCS2D01G506700 chr2B 88.112 286 30 4 2200 2483 730611434 730611717 2.450000e-88 337
16 TraesCS2D01G506700 chr2B 84.188 234 19 11 33 251 730605993 730606223 1.550000e-50 211
17 TraesCS2D01G506700 chr2B 88.034 117 10 4 3360 3473 730612513 730612628 9.610000e-28 135
18 TraesCS2D01G506700 chr2B 92.000 75 6 0 2200 2274 730640477 730640551 7.530000e-19 106
19 TraesCS2D01G506700 chr2B 91.667 72 5 1 5427 5497 443265333 443265404 1.260000e-16 99
20 TraesCS2D01G506700 chr1B 85.185 864 72 37 3967 4812 680811310 680810485 0.000000e+00 835
21 TraesCS2D01G506700 chr1B 81.592 603 45 19 2965 3544 680811880 680811321 6.540000e-119 438
22 TraesCS2D01G506700 chr1B 85.908 369 31 12 5011 5361 680810323 680809958 1.870000e-99 374
23 TraesCS2D01G506700 chr1B 84.646 254 23 8 2201 2438 680812131 680811878 7.120000e-59 239
24 TraesCS2D01G506700 chr7B 93.056 432 29 1 3545 3975 578677010 578676579 1.010000e-176 630
25 TraesCS2D01G506700 chr1D 91.121 428 34 3 3543 3967 9876658 9877084 1.330000e-160 577
26 TraesCS2D01G506700 chr1D 83.146 356 34 4 3615 3967 9878965 9879297 8.950000e-78 302
27 TraesCS2D01G506700 chr1A 90.443 429 37 3 3543 3967 11666609 11667037 3.720000e-156 562
28 TraesCS2D01G506700 chr5D 83.444 604 54 32 4912 5499 217334627 217334054 2.270000e-143 520
29 TraesCS2D01G506700 chr5D 94.040 151 9 0 2051 2201 528717428 528717278 4.280000e-56 230
30 TraesCS2D01G506700 chr5A 83.808 562 55 26 4938 5495 290075101 290074572 8.220000e-138 501
31 TraesCS2D01G506700 chr5A 94.040 151 9 0 2051 2201 656872435 656872285 4.280000e-56 230
32 TraesCS2D01G506700 chr5B 83.333 534 47 27 4970 5495 233236910 233236411 6.490000e-124 455
33 TraesCS2D01G506700 chr5B 94.040 151 9 0 2051 2201 665744619 665744469 4.280000e-56 230
34 TraesCS2D01G506700 chr4A 90.854 328 23 6 3192 3514 614176855 614176530 3.040000e-117 433
35 TraesCS2D01G506700 chr6A 91.626 203 15 2 3542 3742 553931735 553931937 4.190000e-71 279
36 TraesCS2D01G506700 chr6A 93.464 153 8 1 2051 2201 411770405 411770253 5.540000e-55 226
37 TraesCS2D01G506700 chr6A 91.720 157 11 1 2043 2197 538097839 538097683 3.340000e-52 217
38 TraesCS2D01G506700 chr7A 84.698 281 31 11 5224 5499 728291305 728291032 2.520000e-68 270
39 TraesCS2D01G506700 chr7D 92.500 160 10 1 2044 2201 34756859 34757018 1.540000e-55 228
40 TraesCS2D01G506700 chr6D 91.925 161 11 1 2043 2201 392273234 392273074 1.990000e-54 224
41 TraesCS2D01G506700 chr6B 93.464 153 7 2 2051 2201 502316243 502316394 1.990000e-54 224
42 TraesCS2D01G506700 chr4B 92.857 154 9 1 2050 2201 106227562 106227409 7.170000e-54 222


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G506700 chr2D 600401739 600407237 5498 False 4839.500000 8711 100.000000 1 5499 2 chr2D.!!$F2 5498
1 TraesCS2D01G506700 chr2D 600428573 600430851 2278 False 461.333333 833 87.447333 1162 4551 3 chr2D.!!$F3 3389
2 TraesCS2D01G506700 chr2A 734087129 734091227 4098 False 1696.333333 1936 89.188333 806 5494 3 chr2A.!!$F4 4688
3 TraesCS2D01G506700 chr2B 730605993 730614146 8153 False 634.166667 1483 88.658333 33 5499 6 chr2B.!!$F3 5466
4 TraesCS2D01G506700 chr1B 680809958 680812131 2173 True 471.500000 835 84.332750 2201 5361 4 chr1B.!!$R1 3160
5 TraesCS2D01G506700 chr1D 9876658 9879297 2639 False 439.500000 577 87.133500 3543 3967 2 chr1D.!!$F1 424
6 TraesCS2D01G506700 chr5D 217334054 217334627 573 True 520.000000 520 83.444000 4912 5499 1 chr5D.!!$R1 587
7 TraesCS2D01G506700 chr5A 290074572 290075101 529 True 501.000000 501 83.808000 4938 5495 1 chr5A.!!$R1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 184 0.179012 GGGAACCGAGGGTTGTTTCA 60.179 55.000 4.49 0.0 46.95 2.69 F
1624 5434 0.036164 TTGTTGATCAGGGGACGGTG 59.964 55.000 0.00 0.0 0.00 4.94 F
2038 5877 0.040514 TTTTGACCAGTTGCATCGCG 60.041 50.000 0.00 0.0 0.00 5.87 F
2114 5953 1.634960 TGGACCACATACGGACTGAA 58.365 50.000 0.00 0.0 0.00 3.02 F
3359 7372 1.657594 CGCTGAGTTGAGTAGCACATG 59.342 52.381 0.00 0.0 37.29 3.21 F
3853 8049 0.613853 ATGCTGCATGCCCAAGTCTT 60.614 50.000 15.44 0.0 42.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1639 5453 0.657312 CGACAGCAGTCTTGTTGCAA 59.343 50.000 7.71 0.00 43.92 4.08 R
3384 7550 0.467844 TTTGTGCAGTGCCAGACCAT 60.468 50.000 13.72 0.00 0.00 3.55 R
3801 7997 0.165944 CCGATTGCAAACAGGTCGTC 59.834 55.000 15.85 1.21 35.32 4.20 R
3802 7998 0.250124 TCCGATTGCAAACAGGTCGT 60.250 50.000 15.85 0.00 35.32 4.34 R
4177 9604 0.108377 TGTACTCGTTCATGCGGCAT 60.108 50.000 10.23 10.23 0.00 4.40 R
5233 11254 1.002792 TCTCAAGTACGCGATCATCGG 60.003 52.381 15.93 1.43 40.84 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.864176 GCAAAGCAGCCACAAATGC 59.136 52.632 0.00 0.00 42.87 3.56
29 30 2.575461 GCAGCCACAAATGCTCCC 59.425 61.111 0.00 0.00 39.38 4.30
30 31 1.980772 GCAGCCACAAATGCTCCCT 60.981 57.895 0.00 0.00 39.38 4.20
31 32 1.888018 CAGCCACAAATGCTCCCTG 59.112 57.895 0.00 0.00 36.81 4.45
47 48 1.021202 CCTGAAAAACACCGTGCTCA 58.979 50.000 0.00 0.00 0.00 4.26
48 49 1.608590 CCTGAAAAACACCGTGCTCAT 59.391 47.619 0.00 0.00 0.00 2.90
57 58 2.184830 CCGTGCTCATCCCTGCATG 61.185 63.158 0.00 0.00 43.51 4.06
58 59 1.450848 CGTGCTCATCCCTGCATGT 60.451 57.895 0.00 0.00 41.45 3.21
59 60 0.179076 CGTGCTCATCCCTGCATGTA 60.179 55.000 0.00 0.00 41.45 2.29
74 76 6.106003 CCTGCATGTATATAACCGAAGCATA 58.894 40.000 0.00 0.00 0.00 3.14
75 77 6.763135 CCTGCATGTATATAACCGAAGCATAT 59.237 38.462 0.00 0.00 0.00 1.78
85 87 7.907214 ATAACCGAAGCATATTCCTTGTATC 57.093 36.000 0.00 0.00 0.00 2.24
86 88 5.552870 ACCGAAGCATATTCCTTGTATCT 57.447 39.130 0.00 0.00 0.00 1.98
111 113 0.179043 TTTAGCCACTGCACCGTCAA 60.179 50.000 0.00 0.00 41.13 3.18
116 118 0.667993 CCACTGCACCGTCAACATTT 59.332 50.000 0.00 0.00 0.00 2.32
117 119 1.066908 CCACTGCACCGTCAACATTTT 59.933 47.619 0.00 0.00 0.00 1.82
118 120 2.292016 CCACTGCACCGTCAACATTTTA 59.708 45.455 0.00 0.00 0.00 1.52
119 121 3.554524 CACTGCACCGTCAACATTTTAG 58.445 45.455 0.00 0.00 0.00 1.85
122 124 4.097286 ACTGCACCGTCAACATTTTAGTTT 59.903 37.500 0.00 0.00 0.00 2.66
123 125 5.297278 ACTGCACCGTCAACATTTTAGTTTA 59.703 36.000 0.00 0.00 0.00 2.01
124 126 5.753744 TGCACCGTCAACATTTTAGTTTAG 58.246 37.500 0.00 0.00 0.00 1.85
125 127 4.615541 GCACCGTCAACATTTTAGTTTAGC 59.384 41.667 0.00 0.00 0.00 3.09
127 129 6.077838 CACCGTCAACATTTTAGTTTAGCTC 58.922 40.000 0.00 0.00 0.00 4.09
128 130 5.107220 ACCGTCAACATTTTAGTTTAGCTCG 60.107 40.000 0.00 0.00 0.00 5.03
132 134 5.410439 TCAACATTTTAGTTTAGCTCGACCC 59.590 40.000 0.00 0.00 0.00 4.46
162 164 1.924320 GAGTCCGTCTCCTCACACCG 61.924 65.000 0.00 0.00 37.22 4.94
168 170 1.911766 TCTCCTCACACCGGGGAAC 60.912 63.158 12.96 0.00 0.00 3.62
181 183 2.637521 GGGAACCGAGGGTTGTTTC 58.362 57.895 4.49 0.00 46.95 2.78
182 184 0.179012 GGGAACCGAGGGTTGTTTCA 60.179 55.000 4.49 0.00 46.95 2.69
187 203 1.210967 ACCGAGGGTTGTTTCAGACAA 59.789 47.619 0.00 0.00 45.70 3.18
231 247 1.230324 GCACAGTGGAGTCTGAAACC 58.770 55.000 1.84 0.00 38.63 3.27
251 267 1.516386 CTCGTGTATCGCGTGCCTT 60.516 57.895 5.77 0.00 38.57 4.35
252 268 1.472276 CTCGTGTATCGCGTGCCTTC 61.472 60.000 5.77 0.00 38.57 3.46
253 269 1.516386 CGTGTATCGCGTGCCTTCT 60.516 57.895 5.77 0.00 32.40 2.85
254 270 1.472276 CGTGTATCGCGTGCCTTCTC 61.472 60.000 5.77 0.00 32.40 2.87
256 272 1.944676 GTATCGCGTGCCTTCTCGG 60.945 63.158 5.77 0.00 0.00 4.63
280 296 4.992688 GAGAAAATCGAAGAGAGCTCTCA 58.007 43.478 38.20 22.51 45.21 3.27
282 298 4.704540 AGAAAATCGAAGAGAGCTCTCAGA 59.295 41.667 38.20 32.05 45.21 3.27
283 299 5.360714 AGAAAATCGAAGAGAGCTCTCAGAT 59.639 40.000 38.20 32.59 45.21 2.90
285 301 6.707440 AAATCGAAGAGAGCTCTCAGATTA 57.293 37.500 35.42 24.18 45.21 1.75
328 4098 9.759473 AATGGAAGAGAAGAATCTTTTTATGGA 57.241 29.630 0.00 0.00 39.63 3.41
329 4099 8.798859 TGGAAGAGAAGAATCTTTTTATGGAG 57.201 34.615 0.00 0.00 39.63 3.86
330 4100 8.605947 TGGAAGAGAAGAATCTTTTTATGGAGA 58.394 33.333 0.00 0.00 39.63 3.71
427 4198 2.222445 CGCTATATGTTGGGCCGTTAAC 59.778 50.000 0.00 2.72 0.00 2.01
437 4208 2.699846 TGGGCCGTTAACCTCGTATTAT 59.300 45.455 0.00 0.00 0.00 1.28
438 4209 3.134442 TGGGCCGTTAACCTCGTATTATT 59.866 43.478 0.00 0.00 0.00 1.40
439 4210 4.343526 TGGGCCGTTAACCTCGTATTATTA 59.656 41.667 0.00 0.00 0.00 0.98
447 4218 3.584294 ACCTCGTATTATTACCTGGGCT 58.416 45.455 0.00 0.00 0.00 5.19
462 4233 4.876701 GCTCACGGCCCATTATCA 57.123 55.556 0.00 0.00 34.27 2.15
465 4236 1.271054 GCTCACGGCCCATTATCAGAT 60.271 52.381 0.00 0.00 34.27 2.90
480 4251 0.389817 CAGATGGAGAACCGCACGAA 60.390 55.000 0.00 0.00 39.42 3.85
481 4252 0.389948 AGATGGAGAACCGCACGAAC 60.390 55.000 0.00 0.00 39.42 3.95
482 4253 1.683790 GATGGAGAACCGCACGAACG 61.684 60.000 0.00 0.00 39.42 3.95
486 4257 4.696172 GAACCGCACGAACGCACG 62.696 66.667 0.00 0.48 39.31 5.34
488 4259 4.627447 ACCGCACGAACGCACGTA 62.627 61.111 7.13 0.00 44.76 3.57
489 4260 3.396502 CCGCACGAACGCACGTAA 61.397 61.111 7.13 0.00 44.76 3.18
490 4261 2.540469 CGCACGAACGCACGTAAA 59.460 55.556 7.13 0.00 44.76 2.01
491 4262 1.084164 CGCACGAACGCACGTAAAA 60.084 52.632 7.13 0.00 44.76 1.52
494 4265 1.136446 GCACGAACGCACGTAAAAGAT 60.136 47.619 7.13 0.00 44.76 2.40
495 4266 2.743172 CACGAACGCACGTAAAAGATC 58.257 47.619 7.13 0.00 44.76 2.75
496 4267 2.407361 CACGAACGCACGTAAAAGATCT 59.593 45.455 7.13 0.00 44.76 2.75
497 4268 2.660236 ACGAACGCACGTAAAAGATCTC 59.340 45.455 5.72 0.00 44.72 2.75
498 4269 2.915463 CGAACGCACGTAAAAGATCTCT 59.085 45.455 0.00 0.00 0.00 3.10
499 4270 3.001954 CGAACGCACGTAAAAGATCTCTC 60.002 47.826 0.00 0.00 0.00 3.20
500 4271 3.570926 ACGCACGTAAAAGATCTCTCA 57.429 42.857 0.00 0.00 0.00 3.27
501 4272 3.909430 ACGCACGTAAAAGATCTCTCAA 58.091 40.909 0.00 0.00 0.00 3.02
502 4273 4.304110 ACGCACGTAAAAGATCTCTCAAA 58.696 39.130 0.00 0.00 0.00 2.69
503 4274 4.748102 ACGCACGTAAAAGATCTCTCAAAA 59.252 37.500 0.00 0.00 0.00 2.44
504 4275 5.235616 ACGCACGTAAAAGATCTCTCAAAAA 59.764 36.000 0.00 0.00 0.00 1.94
838 4615 0.242825 CTCACCGTCGTTTGCCTAGA 59.757 55.000 0.00 0.00 0.00 2.43
839 4616 0.675083 TCACCGTCGTTTGCCTAGAA 59.325 50.000 0.00 0.00 0.00 2.10
840 4617 1.068895 TCACCGTCGTTTGCCTAGAAA 59.931 47.619 0.00 0.00 0.00 2.52
876 4656 4.241555 CCCCCGCCTTCTCATCGG 62.242 72.222 0.00 0.00 42.58 4.18
917 4697 2.447714 CCTTCTCCCTGCCCCTAGC 61.448 68.421 0.00 0.00 44.14 3.42
961 4741 0.864797 GGTCCGCGTCGTCACTTATC 60.865 60.000 4.92 0.00 0.00 1.75
974 4754 3.031736 TCACTTATCCCTTCCCTCTTCG 58.968 50.000 0.00 0.00 0.00 3.79
989 4769 3.969250 TTCGCCTTCCATCCCGTGC 62.969 63.158 0.00 0.00 0.00 5.34
992 4772 2.677228 CCTTCCATCCCGTGCCTT 59.323 61.111 0.00 0.00 0.00 4.35
1008 4808 2.698406 TTCCCCATACCCCAGCCC 60.698 66.667 0.00 0.00 0.00 5.19
1135 4935 3.249189 GACACCTGGGGTCCTGCA 61.249 66.667 18.56 0.00 31.02 4.41
1143 4943 1.077429 GGGGTCCTGCAGTTCCATC 60.077 63.158 20.78 11.66 0.00 3.51
1218 5018 0.960861 CCTCTGAAACGCCTTTCCCC 60.961 60.000 5.84 0.00 35.75 4.81
1221 5024 0.960861 CTGAAACGCCTTTCCCCCTC 60.961 60.000 5.84 0.00 35.75 4.30
1347 5155 2.752358 CAGCAGCTCCACCTGGAA 59.248 61.111 0.00 0.00 44.91 3.53
1456 5264 2.751166 ATGTCCTCTTGGTGTCTTCG 57.249 50.000 0.00 0.00 34.23 3.79
1467 5275 1.270678 GGTGTCTTCGGTAAGTTGCCT 60.271 52.381 8.47 0.00 34.13 4.75
1483 5292 1.063327 CCTTTTGTTCGTGCGTGCA 59.937 52.632 0.00 0.00 0.00 4.57
1510 5320 5.343860 GTGTGGTTGTTTATATGGTTTTCGC 59.656 40.000 0.00 0.00 0.00 4.70
1511 5321 5.241949 TGTGGTTGTTTATATGGTTTTCGCT 59.758 36.000 0.00 0.00 0.00 4.93
1558 5368 1.883084 GATACGGCCTGTGCTTCGG 60.883 63.158 0.00 0.00 37.74 4.30
1624 5434 0.036164 TTGTTGATCAGGGGACGGTG 59.964 55.000 0.00 0.00 0.00 4.94
1627 5441 0.768622 TTGATCAGGGGACGGTGTTT 59.231 50.000 0.00 0.00 0.00 2.83
1681 5495 4.572571 TTGCAGCCGTTTCCCCGT 62.573 61.111 0.00 0.00 0.00 5.28
1765 5579 3.517602 TCTCCGTGAAAATGGTATGTCG 58.482 45.455 0.00 0.00 0.00 4.35
1782 5600 7.985184 TGGTATGTCGAATTAGCAGACTATTTT 59.015 33.333 4.22 0.00 36.01 1.82
1858 5689 7.503902 GGATTCTTAGTCAGGCCTTTGATTATT 59.496 37.037 0.00 0.00 0.00 1.40
1870 5701 6.457799 GGCCTTTGATTATTCATTTACGTCGT 60.458 38.462 2.21 2.21 0.00 4.34
1884 5715 8.083462 TCATTTACGTCGTCCATTTATATAGCA 58.917 33.333 0.00 0.00 0.00 3.49
1904 5735 1.546029 AGTGTGCACTCGCTATTCTCA 59.454 47.619 19.41 0.00 36.92 3.27
2011 5847 3.140814 GGTTTCCCAGCGGGCATC 61.141 66.667 8.57 0.00 43.94 3.91
2038 5877 0.040514 TTTTGACCAGTTGCATCGCG 60.041 50.000 0.00 0.00 0.00 5.87
2050 5889 3.650070 TGCATCGCGAATCTAGAATCT 57.350 42.857 15.24 0.00 0.00 2.40
2051 5890 4.766404 TGCATCGCGAATCTAGAATCTA 57.234 40.909 15.24 0.00 0.00 1.98
2052 5891 4.476862 TGCATCGCGAATCTAGAATCTAC 58.523 43.478 15.24 0.00 0.00 2.59
2053 5892 4.216472 TGCATCGCGAATCTAGAATCTACT 59.784 41.667 15.24 0.00 0.00 2.57
2054 5893 4.791163 GCATCGCGAATCTAGAATCTACTC 59.209 45.833 15.24 0.00 0.00 2.59
2055 5894 5.328691 CATCGCGAATCTAGAATCTACTCC 58.671 45.833 15.24 0.00 0.00 3.85
2056 5895 3.752222 TCGCGAATCTAGAATCTACTCCC 59.248 47.826 6.20 0.00 0.00 4.30
2057 5896 3.754323 CGCGAATCTAGAATCTACTCCCT 59.246 47.826 0.00 0.00 0.00 4.20
2058 5897 4.142773 CGCGAATCTAGAATCTACTCCCTC 60.143 50.000 0.00 0.00 0.00 4.30
2059 5898 4.157105 GCGAATCTAGAATCTACTCCCTCC 59.843 50.000 6.26 0.00 0.00 4.30
2060 5899 4.393680 CGAATCTAGAATCTACTCCCTCCG 59.606 50.000 6.26 0.00 0.00 4.63
2061 5900 5.318630 GAATCTAGAATCTACTCCCTCCGT 58.681 45.833 0.00 0.00 0.00 4.69
2062 5901 4.792513 TCTAGAATCTACTCCCTCCGTT 57.207 45.455 0.00 0.00 0.00 4.44
2063 5902 4.716794 TCTAGAATCTACTCCCTCCGTTC 58.283 47.826 0.00 0.00 0.00 3.95
2064 5903 3.383698 AGAATCTACTCCCTCCGTTCA 57.616 47.619 0.00 0.00 0.00 3.18
2065 5904 3.025262 AGAATCTACTCCCTCCGTTCAC 58.975 50.000 0.00 0.00 0.00 3.18
2066 5905 2.526888 ATCTACTCCCTCCGTTCACA 57.473 50.000 0.00 0.00 0.00 3.58
2067 5906 2.297698 TCTACTCCCTCCGTTCACAA 57.702 50.000 0.00 0.00 0.00 3.33
2068 5907 2.600790 TCTACTCCCTCCGTTCACAAA 58.399 47.619 0.00 0.00 0.00 2.83
2069 5908 3.170717 TCTACTCCCTCCGTTCACAAAT 58.829 45.455 0.00 0.00 0.00 2.32
2070 5909 4.346730 TCTACTCCCTCCGTTCACAAATA 58.653 43.478 0.00 0.00 0.00 1.40
2071 5910 4.960469 TCTACTCCCTCCGTTCACAAATAT 59.040 41.667 0.00 0.00 0.00 1.28
2072 5911 6.131264 TCTACTCCCTCCGTTCACAAATATA 58.869 40.000 0.00 0.00 0.00 0.86
2073 5912 5.687166 ACTCCCTCCGTTCACAAATATAA 57.313 39.130 0.00 0.00 0.00 0.98
2074 5913 5.671493 ACTCCCTCCGTTCACAAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
2075 5914 5.424252 ACTCCCTCCGTTCACAAATATAAGA 59.576 40.000 0.00 0.00 0.00 2.10
2076 5915 6.099845 ACTCCCTCCGTTCACAAATATAAGAT 59.900 38.462 0.00 0.00 0.00 2.40
2077 5916 6.288294 TCCCTCCGTTCACAAATATAAGATG 58.712 40.000 0.00 0.00 0.00 2.90
2078 5917 5.049405 CCCTCCGTTCACAAATATAAGATGC 60.049 44.000 0.00 0.00 0.00 3.91
2079 5918 5.760253 CCTCCGTTCACAAATATAAGATGCT 59.240 40.000 0.00 0.00 0.00 3.79
2080 5919 6.260936 CCTCCGTTCACAAATATAAGATGCTT 59.739 38.462 0.00 0.00 0.00 3.91
2081 5920 7.201732 CCTCCGTTCACAAATATAAGATGCTTT 60.202 37.037 0.00 0.00 0.00 3.51
2082 5921 7.471721 TCCGTTCACAAATATAAGATGCTTTG 58.528 34.615 0.00 0.00 35.30 2.77
2083 5922 6.692681 CCGTTCACAAATATAAGATGCTTTGG 59.307 38.462 0.00 0.00 33.86 3.28
2084 5923 6.692681 CGTTCACAAATATAAGATGCTTTGGG 59.307 38.462 0.00 0.00 34.15 4.12
2085 5924 7.547227 GTTCACAAATATAAGATGCTTTGGGT 58.453 34.615 0.00 0.00 34.42 4.51
2086 5925 8.682710 GTTCACAAATATAAGATGCTTTGGGTA 58.317 33.333 0.00 0.00 34.42 3.69
2087 5926 8.995027 TCACAAATATAAGATGCTTTGGGTAT 57.005 30.769 0.00 0.00 34.42 2.73
2088 5927 9.420118 TCACAAATATAAGATGCTTTGGGTATT 57.580 29.630 0.00 0.00 34.42 1.89
2097 5936 7.294017 AGATGCTTTGGGTATTTCAATATGG 57.706 36.000 0.00 0.00 0.00 2.74
2098 5937 7.068702 AGATGCTTTGGGTATTTCAATATGGA 58.931 34.615 0.00 0.00 0.00 3.41
2099 5938 6.463995 TGCTTTGGGTATTTCAATATGGAC 57.536 37.500 0.00 0.00 0.00 4.02
2100 5939 5.362430 TGCTTTGGGTATTTCAATATGGACC 59.638 40.000 0.00 0.00 0.00 4.46
2101 5940 5.362430 GCTTTGGGTATTTCAATATGGACCA 59.638 40.000 0.00 0.00 0.00 4.02
2102 5941 6.682861 GCTTTGGGTATTTCAATATGGACCAC 60.683 42.308 0.00 0.00 0.00 4.16
2103 5942 5.458451 TGGGTATTTCAATATGGACCACA 57.542 39.130 0.00 0.00 0.00 4.17
2104 5943 6.024563 TGGGTATTTCAATATGGACCACAT 57.975 37.500 0.00 0.00 43.68 3.21
2105 5944 7.155442 TGGGTATTTCAATATGGACCACATA 57.845 36.000 0.00 0.00 45.60 2.29
2106 5945 7.001674 TGGGTATTTCAATATGGACCACATAC 58.998 38.462 0.00 0.00 44.41 2.39
2107 5946 6.148811 GGGTATTTCAATATGGACCACATACG 59.851 42.308 0.00 0.00 44.41 3.06
2108 5947 6.148811 GGTATTTCAATATGGACCACATACGG 59.851 42.308 0.00 0.00 44.41 4.02
2109 5948 5.360649 TTTCAATATGGACCACATACGGA 57.639 39.130 0.00 0.00 44.41 4.69
2110 5949 4.330944 TCAATATGGACCACATACGGAC 57.669 45.455 0.00 0.00 44.41 4.79
2111 5950 3.964688 TCAATATGGACCACATACGGACT 59.035 43.478 0.00 0.00 44.41 3.85
2112 5951 4.058124 CAATATGGACCACATACGGACTG 58.942 47.826 0.00 0.00 44.41 3.51
2113 5952 1.860641 ATGGACCACATACGGACTGA 58.139 50.000 0.00 0.00 38.26 3.41
2114 5953 1.634960 TGGACCACATACGGACTGAA 58.365 50.000 0.00 0.00 0.00 3.02
2115 5954 1.972075 TGGACCACATACGGACTGAAA 59.028 47.619 0.00 0.00 0.00 2.69
2116 5955 2.569853 TGGACCACATACGGACTGAAAT 59.430 45.455 0.00 0.00 0.00 2.17
2117 5956 2.936498 GGACCACATACGGACTGAAATG 59.064 50.000 0.00 0.00 0.00 2.32
2118 5957 3.369052 GGACCACATACGGACTGAAATGA 60.369 47.826 7.93 0.00 0.00 2.57
2119 5958 3.861840 ACCACATACGGACTGAAATGAG 58.138 45.455 7.93 1.83 0.00 2.90
2120 5959 3.260884 ACCACATACGGACTGAAATGAGT 59.739 43.478 7.93 0.00 0.00 3.41
2121 5960 3.618594 CCACATACGGACTGAAATGAGTG 59.381 47.826 7.93 0.00 0.00 3.51
2122 5961 4.494484 CACATACGGACTGAAATGAGTGA 58.506 43.478 7.93 0.00 0.00 3.41
2123 5962 4.929211 CACATACGGACTGAAATGAGTGAA 59.071 41.667 7.93 0.00 0.00 3.18
2124 5963 4.929808 ACATACGGACTGAAATGAGTGAAC 59.070 41.667 7.93 0.00 0.00 3.18
2125 5964 3.469008 ACGGACTGAAATGAGTGAACA 57.531 42.857 0.00 0.00 0.00 3.18
2126 5965 3.804036 ACGGACTGAAATGAGTGAACAA 58.196 40.909 0.00 0.00 0.00 2.83
2127 5966 4.196193 ACGGACTGAAATGAGTGAACAAA 58.804 39.130 0.00 0.00 0.00 2.83
2128 5967 4.035208 ACGGACTGAAATGAGTGAACAAAC 59.965 41.667 0.00 0.00 0.00 2.93
2129 5968 4.035091 CGGACTGAAATGAGTGAACAAACA 59.965 41.667 0.00 0.00 0.00 2.83
2130 5969 5.273944 GGACTGAAATGAGTGAACAAACAC 58.726 41.667 0.00 0.00 40.60 3.32
2131 5970 5.163663 GGACTGAAATGAGTGAACAAACACA 60.164 40.000 0.00 0.00 42.45 3.72
2132 5971 5.640732 ACTGAAATGAGTGAACAAACACAC 58.359 37.500 0.00 0.00 42.45 3.82
2134 5973 6.597672 ACTGAAATGAGTGAACAAACACACTA 59.402 34.615 0.00 0.00 45.54 2.74
2135 5974 7.120579 ACTGAAATGAGTGAACAAACACACTAA 59.879 33.333 0.00 0.00 45.54 2.24
2136 5975 7.821652 TGAAATGAGTGAACAAACACACTAAA 58.178 30.769 0.00 0.00 45.54 1.85
2137 5976 8.300286 TGAAATGAGTGAACAAACACACTAAAA 58.700 29.630 0.00 0.00 45.54 1.52
2138 5977 8.460831 AAATGAGTGAACAAACACACTAAAAC 57.539 30.769 0.00 0.00 45.54 2.43
2139 5978 5.623335 TGAGTGAACAAACACACTAAAACG 58.377 37.500 0.00 0.00 45.54 3.60
2140 5979 5.179742 TGAGTGAACAAACACACTAAAACGT 59.820 36.000 0.00 0.00 45.54 3.99
2141 5980 5.387279 AGTGAACAAACACACTAAAACGTG 58.613 37.500 0.00 0.00 44.06 4.49
2143 5982 5.282076 GTGAACAAACACACTAAAACGTGTC 59.718 40.000 0.00 0.00 45.74 3.67
2144 5983 5.179742 TGAACAAACACACTAAAACGTGTCT 59.820 36.000 0.00 0.00 45.74 3.41
2145 5984 6.368243 TGAACAAACACACTAAAACGTGTCTA 59.632 34.615 0.00 0.00 45.74 2.59
2146 5985 6.913873 ACAAACACACTAAAACGTGTCTAT 57.086 33.333 0.00 0.00 45.74 1.98
2147 5986 8.422973 AACAAACACACTAAAACGTGTCTATA 57.577 30.769 0.00 0.00 45.74 1.31
2148 5987 7.844482 ACAAACACACTAAAACGTGTCTATAC 58.156 34.615 0.00 0.00 45.74 1.47
2149 5988 7.492020 ACAAACACACTAAAACGTGTCTATACA 59.508 33.333 0.00 0.00 45.74 2.29
2150 5989 8.492748 CAAACACACTAAAACGTGTCTATACAT 58.507 33.333 0.00 0.00 45.74 2.29
2151 5990 7.807687 ACACACTAAAACGTGTCTATACATC 57.192 36.000 0.00 0.00 45.74 3.06
2152 5991 6.810182 ACACACTAAAACGTGTCTATACATCC 59.190 38.462 0.00 0.00 45.74 3.51
2153 5992 6.020916 CACACTAAAACGTGTCTATACATCCG 60.021 42.308 0.00 0.00 45.74 4.18
2154 5993 6.127925 ACACTAAAACGTGTCTATACATCCGA 60.128 38.462 0.00 0.00 44.32 4.55
2155 5994 6.916387 CACTAAAACGTGTCTATACATCCGAT 59.084 38.462 0.00 0.00 38.08 4.18
2156 5995 7.434307 CACTAAAACGTGTCTATACATCCGATT 59.566 37.037 0.00 0.00 38.08 3.34
2157 5996 6.823678 AAAACGTGTCTATACATCCGATTC 57.176 37.500 0.00 0.00 38.08 2.52
2158 5997 5.509716 AACGTGTCTATACATCCGATTCA 57.490 39.130 0.00 0.00 38.08 2.57
2159 5998 4.856664 ACGTGTCTATACATCCGATTCAC 58.143 43.478 0.00 0.00 38.08 3.18
2160 5999 4.337274 ACGTGTCTATACATCCGATTCACA 59.663 41.667 0.00 0.00 38.08 3.58
2161 6000 5.163591 ACGTGTCTATACATCCGATTCACAA 60.164 40.000 0.00 0.00 38.08 3.33
2162 6001 5.746721 CGTGTCTATACATCCGATTCACAAA 59.253 40.000 0.00 0.00 38.08 2.83
2163 6002 6.254804 CGTGTCTATACATCCGATTCACAAAA 59.745 38.462 0.00 0.00 38.08 2.44
2164 6003 7.201487 CGTGTCTATACATCCGATTCACAAAAA 60.201 37.037 0.00 0.00 38.08 1.94
2235 6075 5.581085 CCCTGTAGTCTGCAACTTTACATAC 59.419 44.000 6.82 0.59 39.55 2.39
2242 6082 6.149474 AGTCTGCAACTTTACATACCATTGAC 59.851 38.462 0.00 0.00 33.03 3.18
2244 6084 6.149308 TCTGCAACTTTACATACCATTGACTG 59.851 38.462 0.00 0.00 0.00 3.51
2305 6146 9.135189 CAATTCTGATCCCCATTGTAATCTTTA 57.865 33.333 0.00 0.00 0.00 1.85
2387 6233 3.368739 GCAAGGGTTCCTGGAATGATTTG 60.369 47.826 13.07 14.66 32.13 2.32
2433 6288 8.646004 TCCTCTATTTGACATATCTCTTTCCAG 58.354 37.037 0.00 0.00 0.00 3.86
2484 6339 9.625438 TTGATCCTGGATCTGGCATATATATAT 57.375 33.333 30.97 0.00 39.56 0.86
2486 6341 9.887629 GATCCTGGATCTGGCATATATATATTG 57.112 37.037 25.93 1.26 36.27 1.90
2487 6342 9.625438 ATCCTGGATCTGGCATATATATATTGA 57.375 33.333 2.57 0.96 0.00 2.57
2522 6377 3.186409 GTCAATTCGCAGTGTACATGTGT 59.814 43.478 9.11 0.00 0.00 3.72
2535 6390 9.371136 CAGTGTACATGTGTTGTATATCTTTCT 57.629 33.333 9.11 0.00 42.63 2.52
2544 6399 8.486210 TGTGTTGTATATCTTTCTCAAGGCTAT 58.514 33.333 0.00 0.00 0.00 2.97
2545 6400 9.331282 GTGTTGTATATCTTTCTCAAGGCTATT 57.669 33.333 0.00 0.00 0.00 1.73
2725 6580 3.469008 CCTGAATATCGCCAGGTACAA 57.531 47.619 0.00 0.00 43.71 2.41
2735 6590 3.958147 TCGCCAGGTACAATTATCTCTGA 59.042 43.478 0.00 0.00 0.00 3.27
2736 6591 4.588951 TCGCCAGGTACAATTATCTCTGAT 59.411 41.667 0.00 0.00 0.00 2.90
2759 6615 7.444792 TGATATTTTTGCTTTGCTTTGAACCAT 59.555 29.630 0.00 0.00 0.00 3.55
2816 6672 9.901172 AAAATATGGATTTAGAGACCTTAACGT 57.099 29.630 0.00 0.00 34.01 3.99
2817 6673 8.888579 AATATGGATTTAGAGACCTTAACGTG 57.111 34.615 0.00 0.00 0.00 4.49
2819 6675 3.869832 GGATTTAGAGACCTTAACGTGGC 59.130 47.826 0.00 0.00 0.00 5.01
2820 6676 2.642139 TTAGAGACCTTAACGTGGCG 57.358 50.000 0.00 0.00 0.00 5.69
2821 6677 1.825090 TAGAGACCTTAACGTGGCGA 58.175 50.000 0.00 0.00 0.00 5.54
2828 6685 2.353579 ACCTTAACGTGGCGAATTATGC 59.646 45.455 0.00 0.00 0.00 3.14
2846 6703 9.618890 GAATTATGCCCATATCAGCTTCTATTA 57.381 33.333 0.00 0.00 0.00 0.98
2927 6784 6.282930 CAAACATGGGAAACAAGTTGATCTT 58.717 36.000 10.54 0.00 39.85 2.40
3019 6882 4.949856 ACCACTGAACTGTCAACTGAATTT 59.050 37.500 0.00 0.00 31.88 1.82
3076 6940 6.867816 GGATGCACTCATCTTAGAATAGACAG 59.132 42.308 0.00 0.00 46.41 3.51
3184 7056 2.416972 GCGATAGTTCCACCGAAAGACT 60.417 50.000 0.00 0.00 39.35 3.24
3185 7057 3.179830 CGATAGTTCCACCGAAAGACTG 58.820 50.000 0.00 0.00 0.00 3.51
3186 7058 3.119602 CGATAGTTCCACCGAAAGACTGA 60.120 47.826 0.00 0.00 0.00 3.41
3187 7059 4.617530 CGATAGTTCCACCGAAAGACTGAA 60.618 45.833 0.00 0.00 0.00 3.02
3188 7060 3.771577 AGTTCCACCGAAAGACTGAAT 57.228 42.857 0.00 0.00 0.00 2.57
3189 7061 4.884668 AGTTCCACCGAAAGACTGAATA 57.115 40.909 0.00 0.00 0.00 1.75
3190 7062 4.822026 AGTTCCACCGAAAGACTGAATAG 58.178 43.478 0.00 0.00 0.00 1.73
3191 7063 4.527038 AGTTCCACCGAAAGACTGAATAGA 59.473 41.667 0.00 0.00 0.00 1.98
3192 7064 4.720649 TCCACCGAAAGACTGAATAGAG 57.279 45.455 0.00 0.00 0.00 2.43
3193 7065 4.087182 TCCACCGAAAGACTGAATAGAGT 58.913 43.478 0.00 0.00 0.00 3.24
3194 7066 4.527038 TCCACCGAAAGACTGAATAGAGTT 59.473 41.667 0.00 0.00 0.00 3.01
3195 7067 4.865365 CCACCGAAAGACTGAATAGAGTTC 59.135 45.833 0.00 0.00 0.00 3.01
3196 7068 4.865365 CACCGAAAGACTGAATAGAGTTCC 59.135 45.833 0.00 0.00 0.00 3.62
3197 7069 4.527038 ACCGAAAGACTGAATAGAGTTCCA 59.473 41.667 0.00 0.00 0.00 3.53
3198 7070 4.865365 CCGAAAGACTGAATAGAGTTCCAC 59.135 45.833 0.00 0.00 0.00 4.02
3199 7071 5.336849 CCGAAAGACTGAATAGAGTTCCACT 60.337 44.000 0.00 0.00 0.00 4.00
3200 7072 5.574830 CGAAAGACTGAATAGAGTTCCACTG 59.425 44.000 0.00 0.00 0.00 3.66
3201 7073 6.570571 CGAAAGACTGAATAGAGTTCCACTGA 60.571 42.308 0.00 0.00 0.00 3.41
3202 7074 6.672266 AAGACTGAATAGAGTTCCACTGAA 57.328 37.500 0.00 0.00 0.00 3.02
3203 7075 6.672266 AGACTGAATAGAGTTCCACTGAAA 57.328 37.500 0.00 0.00 30.79 2.69
3204 7076 6.696411 AGACTGAATAGAGTTCCACTGAAAG 58.304 40.000 0.00 0.00 42.29 2.62
3205 7077 6.495181 AGACTGAATAGAGTTCCACTGAAAGA 59.505 38.462 0.00 0.00 37.43 2.52
3206 7078 6.459923 ACTGAATAGAGTTCCACTGAAAGAC 58.540 40.000 0.00 0.00 37.43 3.01
3279 7161 3.694566 GACACCTGAAGGGCGAATAATTT 59.305 43.478 0.56 0.00 40.27 1.82
3317 7203 2.331194 GCATTTGTGTGCACATCCTTC 58.669 47.619 24.69 10.27 44.43 3.46
3359 7372 1.657594 CGCTGAGTTGAGTAGCACATG 59.342 52.381 0.00 0.00 37.29 3.21
3384 7550 2.710377 ACGATCAGTTATTGGCTGCAA 58.290 42.857 0.50 0.00 34.21 4.08
3469 7658 7.976175 CCAGGAATGGCTTATTTCTTTAGAAAC 59.024 37.037 7.05 0.00 45.55 2.78
3484 7673 8.019656 TCTTTAGAAACTAGAAACACTGTCCT 57.980 34.615 0.00 0.00 0.00 3.85
3544 7740 5.726793 AGTACATCCCAGTCTTTCATAGGTT 59.273 40.000 0.00 0.00 0.00 3.50
3546 7742 5.892348 ACATCCCAGTCTTTCATAGGTTTT 58.108 37.500 0.00 0.00 0.00 2.43
3606 7802 9.989869 GTAAAGATGTTTACAGGAAAAGCTATC 57.010 33.333 17.99 0.00 45.15 2.08
3607 7803 6.910536 AGATGTTTACAGGAAAAGCTATCG 57.089 37.500 0.00 0.00 0.00 2.92
3642 7838 2.679996 AACCAAAGATGCCGCCCC 60.680 61.111 0.00 0.00 0.00 5.80
3643 7839 3.224007 AACCAAAGATGCCGCCCCT 62.224 57.895 0.00 0.00 0.00 4.79
3644 7840 3.142838 CCAAAGATGCCGCCCCTG 61.143 66.667 0.00 0.00 0.00 4.45
3660 7856 1.687493 CTGGGGGAGAGAGACACCC 60.687 68.421 0.00 0.00 46.50 4.61
3667 7863 1.670791 GAGAGAGACACCCGACCTAG 58.329 60.000 0.00 0.00 0.00 3.02
3683 7879 4.337145 GACCTAGCTAGCCTATGAGCTTA 58.663 47.826 15.74 0.00 46.99 3.09
3718 7914 5.338822 GCTCGAGGTTCAAACGAAAAATTAC 59.661 40.000 15.58 0.00 35.70 1.89
3758 7954 6.645790 AACAGTTTGCAAGATCTCTTTGAT 57.354 33.333 0.00 0.00 38.27 2.57
3768 7964 5.269505 AGATCTCTTTGATAACACTCCCG 57.730 43.478 0.00 0.00 35.14 5.14
3778 7974 4.529377 TGATAACACTCCCGTAGTTTCCTT 59.471 41.667 0.00 0.00 35.76 3.36
3801 7997 7.395190 TTCAACTCCTTGGTGAATATGATTG 57.605 36.000 0.00 0.00 46.39 2.67
3802 7998 6.720309 TCAACTCCTTGGTGAATATGATTGA 58.280 36.000 0.00 0.00 39.83 2.57
3803 7999 6.599244 TCAACTCCTTGGTGAATATGATTGAC 59.401 38.462 0.00 0.00 39.83 3.18
3819 8015 0.865111 TGACGACCTGTTTGCAATCG 59.135 50.000 15.75 15.75 38.50 3.34
3837 8033 0.788995 CGGATGCGATCTGAAGATGC 59.211 55.000 0.00 3.17 37.90 3.91
3853 8049 0.613853 ATGCTGCATGCCCAAGTCTT 60.614 50.000 15.44 0.00 42.00 3.01
3855 8051 1.214589 CTGCATGCCCAAGTCTTGC 59.785 57.895 16.68 0.00 35.81 4.01
3857 8053 2.180017 CATGCCCAAGTCTTGCGC 59.820 61.111 14.16 14.16 35.10 6.09
3862 8058 2.644992 CCAAGTCTTGCGCCAACC 59.355 61.111 4.18 0.00 0.00 3.77
3905 8102 5.529581 AAAGCTTCTAGAGTAGCAGGATC 57.470 43.478 16.79 0.00 40.34 3.36
3907 8104 3.888930 AGCTTCTAGAGTAGCAGGATCAC 59.111 47.826 16.79 0.00 40.34 3.06
3908 8105 3.005367 GCTTCTAGAGTAGCAGGATCACC 59.995 52.174 10.90 0.00 38.19 4.02
3909 8106 2.852449 TCTAGAGTAGCAGGATCACCG 58.148 52.381 0.00 0.00 41.83 4.94
3930 8127 3.474600 GATGCCATGAATCACTAGCACT 58.525 45.455 5.92 0.00 32.26 4.40
3940 8137 2.325484 TCACTAGCACTGAAGACCCAA 58.675 47.619 0.00 0.00 0.00 4.12
3941 8138 2.300152 TCACTAGCACTGAAGACCCAAG 59.700 50.000 0.00 0.00 0.00 3.61
3953 8150 5.285401 TGAAGACCCAAGATAGGAACCATA 58.715 41.667 0.00 0.00 0.00 2.74
4096 9523 2.170166 CTAGGCCTTTCAACCATTGCA 58.830 47.619 12.58 0.00 0.00 4.08
4119 9546 5.041191 AGTCTTTGAAGTTCAGTCATGGT 57.959 39.130 5.56 0.00 0.00 3.55
4177 9604 3.375699 GAGGGACCACTCAGATTTCCTA 58.624 50.000 0.00 0.00 37.44 2.94
4288 9715 3.118956 CGGAGTTAGAAATGGCACTCTCT 60.119 47.826 4.30 2.59 36.64 3.10
4374 9805 3.260100 CAAGGAGGCCCCCACAGT 61.260 66.667 5.89 0.00 34.66 3.55
4431 9866 3.001838 TCACTGCGTGTTTTGTGACATAC 59.998 43.478 8.22 0.00 34.94 2.39
4442 9877 5.896922 TTTGTGACATACGGCAATTTTTG 57.103 34.783 0.00 0.00 0.00 2.44
4477 9913 3.074538 ACTCAACTTGGAGTTTAGGCCAT 59.925 43.478 5.01 0.00 45.59 4.40
4487 9923 2.571653 AGTTTAGGCCATACTCACTGCA 59.428 45.455 5.01 0.00 0.00 4.41
4553 9993 4.325972 CAATATTTTTGGCAGCCTTGGTT 58.674 39.130 14.15 0.00 0.00 3.67
4579 10020 1.339929 GTTGCCTGGTGAAAATCGGTT 59.660 47.619 0.00 0.00 0.00 4.44
4589 10030 6.654959 TGGTGAAAATCGGTTATAGGATTCA 58.345 36.000 0.00 0.00 31.95 2.57
4630 10071 1.766625 TTGGTTGGCAGGCCATTTGG 61.767 55.000 14.71 0.00 46.64 3.28
4699 10158 1.255667 ATCTTGGTACGCGGTCCACT 61.256 55.000 20.79 8.79 33.12 4.00
4701 10160 0.458669 CTTGGTACGCGGTCCACTAT 59.541 55.000 20.79 0.00 33.12 2.12
4703 10162 1.761449 TGGTACGCGGTCCACTATTA 58.239 50.000 18.00 0.00 0.00 0.98
4704 10163 1.405105 TGGTACGCGGTCCACTATTAC 59.595 52.381 18.00 5.02 0.00 1.89
4705 10164 1.597937 GGTACGCGGTCCACTATTACG 60.598 57.143 12.47 0.00 0.00 3.18
4709 10168 1.947642 CGGTCCACTATTACGCGCC 60.948 63.158 5.73 0.00 0.00 6.53
4710 10169 1.947642 GGTCCACTATTACGCGCCG 60.948 63.158 5.73 0.00 0.00 6.46
4712 10171 1.226745 TCCACTATTACGCGCCGTG 60.227 57.895 5.73 6.44 41.39 4.94
4812 10427 6.452480 CGTGTGTGTTATCTTGACTTATCACG 60.452 42.308 0.00 0.00 33.38 4.35
4818 10461 1.130938 TCTTGACTTATCACGCGCGTA 59.869 47.619 37.24 23.40 33.38 4.42
4819 10462 2.117137 CTTGACTTATCACGCGCGTAT 58.883 47.619 37.24 27.81 33.38 3.06
4884 10527 7.176690 AGTGTTGTCTTATGACCCAATTAAAGG 59.823 37.037 6.32 0.00 42.28 3.11
4896 10539 6.373005 CCCAATTAAAGGGTTTGATTTCCT 57.627 37.500 7.95 0.00 41.61 3.36
4898 10541 7.912719 CCCAATTAAAGGGTTTGATTTCCTAA 58.087 34.615 7.95 0.00 41.61 2.69
4900 10543 7.822334 CCAATTAAAGGGTTTGATTTCCTAACC 59.178 37.037 0.00 0.00 45.81 2.85
4920 10563 0.608308 GCCCCAACAGTAGGGTGTTC 60.608 60.000 9.82 0.00 45.95 3.18
4929 10576 4.673968 ACAGTAGGGTGTTCACTGATCTA 58.326 43.478 7.88 0.00 41.80 1.98
5220 11241 0.682209 AAGGAAATCCGCAGCAGCAT 60.682 50.000 0.82 0.00 42.27 3.79
5233 11254 1.202394 AGCAGCATCAGTGAGATCGAC 60.202 52.381 0.00 0.00 33.72 4.20
5411 11467 3.724508 ACACCACGAGATGAGATGATC 57.275 47.619 0.00 0.00 0.00 2.92
5424 11480 5.614324 TGAGATGATCAACGGTAAGGATT 57.386 39.130 0.00 0.00 34.02 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.675075 GGCTGCTTTGCCGGGTTA 60.675 61.111 2.18 0.00 43.74 2.85
6 7 3.903317 AGCATTTGTGGCTGCTTTGCC 62.903 52.381 0.00 8.62 46.22 4.52
7 8 0.601841 AGCATTTGTGGCTGCTTTGC 60.602 50.000 0.00 0.69 46.22 3.68
8 9 3.599412 AGCATTTGTGGCTGCTTTG 57.401 47.368 0.00 0.00 46.22 2.77
13 14 0.609957 TCAGGGAGCATTTGTGGCTG 60.610 55.000 0.00 0.00 42.78 4.85
14 15 0.112995 TTCAGGGAGCATTTGTGGCT 59.887 50.000 0.00 0.00 46.07 4.75
15 16 0.968405 TTTCAGGGAGCATTTGTGGC 59.032 50.000 0.00 0.00 0.00 5.01
16 17 3.181467 TGTTTTTCAGGGAGCATTTGTGG 60.181 43.478 0.00 0.00 0.00 4.17
17 18 3.803778 GTGTTTTTCAGGGAGCATTTGTG 59.196 43.478 0.00 0.00 0.00 3.33
18 19 3.181466 GGTGTTTTTCAGGGAGCATTTGT 60.181 43.478 0.00 0.00 0.00 2.83
19 20 3.392882 GGTGTTTTTCAGGGAGCATTTG 58.607 45.455 0.00 0.00 0.00 2.32
20 21 2.035832 CGGTGTTTTTCAGGGAGCATTT 59.964 45.455 0.00 0.00 0.00 2.32
21 22 1.613437 CGGTGTTTTTCAGGGAGCATT 59.387 47.619 0.00 0.00 0.00 3.56
22 23 1.247567 CGGTGTTTTTCAGGGAGCAT 58.752 50.000 0.00 0.00 0.00 3.79
23 24 0.106918 ACGGTGTTTTTCAGGGAGCA 60.107 50.000 0.00 0.00 0.00 4.26
24 25 0.310854 CACGGTGTTTTTCAGGGAGC 59.689 55.000 0.00 0.00 0.00 4.70
25 26 0.310854 GCACGGTGTTTTTCAGGGAG 59.689 55.000 10.24 0.00 0.00 4.30
26 27 0.106918 AGCACGGTGTTTTTCAGGGA 60.107 50.000 10.24 0.00 0.00 4.20
27 28 0.310854 GAGCACGGTGTTTTTCAGGG 59.689 55.000 10.24 0.00 0.00 4.45
28 29 1.021202 TGAGCACGGTGTTTTTCAGG 58.979 50.000 10.24 0.00 0.00 3.86
29 30 2.350772 GGATGAGCACGGTGTTTTTCAG 60.351 50.000 10.24 0.00 0.00 3.02
30 31 1.606668 GGATGAGCACGGTGTTTTTCA 59.393 47.619 10.24 9.13 0.00 2.69
31 32 1.068541 GGGATGAGCACGGTGTTTTTC 60.069 52.381 10.24 4.99 0.00 2.29
47 48 5.734720 CTTCGGTTATATACATGCAGGGAT 58.265 41.667 0.00 0.00 0.00 3.85
48 49 4.562757 GCTTCGGTTATATACATGCAGGGA 60.563 45.833 2.31 0.00 0.00 4.20
57 58 8.773404 ACAAGGAATATGCTTCGGTTATATAC 57.227 34.615 0.00 0.00 0.00 1.47
59 60 9.601217 GATACAAGGAATATGCTTCGGTTATAT 57.399 33.333 0.00 0.00 0.00 0.86
74 76 7.121315 GTGGCTAAAACAGAAGATACAAGGAAT 59.879 37.037 0.00 0.00 0.00 3.01
75 77 6.430000 GTGGCTAAAACAGAAGATACAAGGAA 59.570 38.462 0.00 0.00 0.00 3.36
84 86 2.878406 GTGCAGTGGCTAAAACAGAAGA 59.122 45.455 0.00 0.00 41.91 2.87
85 87 2.030805 GGTGCAGTGGCTAAAACAGAAG 60.031 50.000 0.00 0.00 41.91 2.85
86 88 1.953686 GGTGCAGTGGCTAAAACAGAA 59.046 47.619 0.00 0.00 41.91 3.02
111 113 4.935808 CAGGGTCGAGCTAAACTAAAATGT 59.064 41.667 15.18 0.00 0.00 2.71
116 118 1.135199 CGCAGGGTCGAGCTAAACTAA 60.135 52.381 15.18 0.00 0.00 2.24
117 119 0.454600 CGCAGGGTCGAGCTAAACTA 59.545 55.000 15.18 0.00 0.00 2.24
118 120 1.215647 CGCAGGGTCGAGCTAAACT 59.784 57.895 15.18 0.00 0.00 2.66
119 121 3.782042 CGCAGGGTCGAGCTAAAC 58.218 61.111 15.18 0.00 0.00 2.01
132 134 4.742201 CGGACTCCACCACCGCAG 62.742 72.222 0.00 0.00 40.19 5.18
144 146 1.972223 CGGTGTGAGGAGACGGACT 60.972 63.158 0.00 0.00 0.00 3.85
150 152 1.911766 GTTCCCCGGTGTGAGGAGA 60.912 63.158 0.00 0.00 0.00 3.71
162 164 0.892358 GAAACAACCCTCGGTTCCCC 60.892 60.000 0.00 0.00 43.05 4.81
168 170 1.961793 TTGTCTGAAACAACCCTCGG 58.038 50.000 0.00 0.00 42.95 4.63
181 183 7.277981 ACAGTGTTGTAACTAGACTTTTGTCTG 59.722 37.037 8.73 0.00 46.77 3.51
187 203 7.208080 CACCTACAGTGTTGTAACTAGACTTT 58.792 38.462 0.00 0.00 41.93 2.66
221 237 2.005370 TACACGAGGGGTTTCAGACT 57.995 50.000 0.00 0.00 0.00 3.24
256 272 3.733684 AGAGCTCTCTTCGATTTTCTCGC 60.734 47.826 11.45 0.00 38.74 5.03
257 273 4.027572 AGAGCTCTCTTCGATTTTCTCG 57.972 45.455 11.45 0.00 39.56 4.04
258 274 4.992688 TGAGAGCTCTCTTCGATTTTCTC 58.007 43.478 36.78 13.45 43.25 2.87
260 276 4.992688 TCTGAGAGCTCTCTTCGATTTTC 58.007 43.478 36.78 14.12 43.25 2.29
261 277 5.596836 ATCTGAGAGCTCTCTTCGATTTT 57.403 39.130 36.78 17.07 43.25 1.82
262 278 5.596836 AATCTGAGAGCTCTCTTCGATTT 57.403 39.130 36.78 22.47 43.25 2.17
263 279 6.899393 ATAATCTGAGAGCTCTCTTCGATT 57.101 37.500 36.78 34.60 43.25 3.34
264 280 6.899393 AATAATCTGAGAGCTCTCTTCGAT 57.101 37.500 36.78 30.04 43.25 3.59
265 281 6.707440 AAATAATCTGAGAGCTCTCTTCGA 57.293 37.500 36.78 29.40 43.25 3.71
266 282 7.769272 AAAAATAATCTGAGAGCTCTCTTCG 57.231 36.000 36.78 26.13 43.25 3.79
303 1226 9.406113 CTCCATAAAAAGATTCTTCTCTTCCAT 57.594 33.333 0.00 0.00 34.40 3.41
372 4142 7.995488 AGTTCTTCTCTTCCAGATTCTCAAAAA 59.005 33.333 0.00 0.00 0.00 1.94
373 4143 7.443575 CAGTTCTTCTCTTCCAGATTCTCAAAA 59.556 37.037 0.00 0.00 0.00 2.44
374 4144 6.933521 CAGTTCTTCTCTTCCAGATTCTCAAA 59.066 38.462 0.00 0.00 0.00 2.69
375 4145 6.268617 TCAGTTCTTCTCTTCCAGATTCTCAA 59.731 38.462 0.00 0.00 0.00 3.02
376 4146 5.777223 TCAGTTCTTCTCTTCCAGATTCTCA 59.223 40.000 0.00 0.00 0.00 3.27
377 4147 6.279513 TCAGTTCTTCTCTTCCAGATTCTC 57.720 41.667 0.00 0.00 0.00 2.87
378 4148 5.187576 CCTCAGTTCTTCTCTTCCAGATTCT 59.812 44.000 0.00 0.00 0.00 2.40
379 4149 5.046663 ACCTCAGTTCTTCTCTTCCAGATTC 60.047 44.000 0.00 0.00 0.00 2.52
380 4150 4.843516 ACCTCAGTTCTTCTCTTCCAGATT 59.156 41.667 0.00 0.00 0.00 2.40
381 4151 4.424842 ACCTCAGTTCTTCTCTTCCAGAT 58.575 43.478 0.00 0.00 0.00 2.90
382 4152 3.850752 ACCTCAGTTCTTCTCTTCCAGA 58.149 45.455 0.00 0.00 0.00 3.86
383 4153 4.615588 AACCTCAGTTCTTCTCTTCCAG 57.384 45.455 0.00 0.00 0.00 3.86
401 4171 1.235724 GCCCAACATATAGCGGAACC 58.764 55.000 0.00 0.00 0.00 3.62
410 4181 2.743838 CGAGGTTAACGGCCCAACATAT 60.744 50.000 0.00 0.00 0.00 1.78
427 4198 3.576982 TGAGCCCAGGTAATAATACGAGG 59.423 47.826 0.00 0.00 32.51 4.63
447 4218 1.072173 CCATCTGATAATGGGCCGTGA 59.928 52.381 0.00 0.00 42.19 4.35
462 4233 0.389948 GTTCGTGCGGTTCTCCATCT 60.390 55.000 0.00 0.00 0.00 2.90
465 4236 2.355363 CGTTCGTGCGGTTCTCCA 60.355 61.111 0.00 0.00 0.00 3.86
473 4244 1.045469 CTTTTACGTGCGTTCGTGCG 61.045 55.000 14.89 8.32 43.93 5.34
474 4245 0.230260 TCTTTTACGTGCGTTCGTGC 59.770 50.000 14.89 0.00 43.93 5.34
475 4246 2.407361 AGATCTTTTACGTGCGTTCGTG 59.593 45.455 14.89 1.65 43.93 4.35
480 4251 3.570926 TGAGAGATCTTTTACGTGCGT 57.429 42.857 0.00 2.05 0.00 5.24
481 4252 4.903638 TTTGAGAGATCTTTTACGTGCG 57.096 40.909 0.00 0.00 0.00 5.34
801 4572 1.003331 GAGATGAGCGTCGTCGAGATT 60.003 52.381 6.17 0.00 37.48 2.40
839 4616 2.545322 GGACGACGGTGACTCTCTTTTT 60.545 50.000 0.00 0.00 0.00 1.94
840 4617 1.000496 GGACGACGGTGACTCTCTTTT 60.000 52.381 0.00 0.00 0.00 2.27
894 4674 4.847444 GGCAGGGAGAAGGCGAGC 62.847 72.222 0.00 0.00 0.00 5.03
901 4681 2.366972 GGCTAGGGGCAGGGAGAA 60.367 66.667 0.00 0.00 44.01 2.87
902 4682 4.499116 GGGCTAGGGGCAGGGAGA 62.499 72.222 0.00 0.00 44.01 3.71
947 4727 1.557651 GAAGGGATAAGTGACGACGC 58.442 55.000 0.00 0.00 0.00 5.19
961 4741 1.222113 GAAGGCGAAGAGGGAAGGG 59.778 63.158 0.00 0.00 0.00 3.95
974 4754 3.645268 AAGGCACGGGATGGAAGGC 62.645 63.158 0.00 0.00 0.00 4.35
989 4769 2.768022 GGCTGGGGTATGGGGAAGG 61.768 68.421 0.00 0.00 0.00 3.46
992 4772 4.855230 GGGGCTGGGGTATGGGGA 62.855 72.222 0.00 0.00 0.00 4.81
1008 4808 3.997064 CTGAACGAGCAGCGGAGGG 62.997 68.421 4.06 0.00 46.49 4.30
1016 4816 2.283529 GGGGAGGACTGAACGAGCA 61.284 63.158 0.00 0.00 0.00 4.26
1017 4817 2.579738 GGGGAGGACTGAACGAGC 59.420 66.667 0.00 0.00 0.00 5.03
1018 4818 2.885861 CGGGGAGGACTGAACGAG 59.114 66.667 0.00 0.00 0.00 4.18
1019 4819 3.379445 GCGGGGAGGACTGAACGA 61.379 66.667 0.00 0.00 0.00 3.85
1020 4820 4.796231 CGCGGGGAGGACTGAACG 62.796 72.222 0.00 0.00 0.00 3.95
1135 4935 1.323412 ATCGCTAGCTCGATGGAACT 58.677 50.000 13.93 0.00 46.18 3.01
1143 4943 1.081774 CCTTCGGATCGCTAGCTCG 60.082 63.158 13.93 11.15 0.00 5.03
1290 5098 1.451028 GGTGACCAGCCTCATGAGC 60.451 63.158 17.76 12.53 0.00 4.26
1386 5194 3.047280 GCCGTGCCATCGTTGACA 61.047 61.111 0.00 0.00 0.00 3.58
1467 5275 1.600013 ACTATGCACGCACGAACAAAA 59.400 42.857 0.00 0.00 0.00 2.44
1483 5292 8.455682 CGAAAACCATATAAACAACCACACTAT 58.544 33.333 0.00 0.00 0.00 2.12
1510 5320 2.233431 CTCAGAGACCTTCCTGTTGGAG 59.767 54.545 0.00 0.00 44.24 3.86
1511 5321 2.251818 CTCAGAGACCTTCCTGTTGGA 58.748 52.381 0.00 0.00 41.36 3.53
1558 5368 2.292267 CTTACCACTGGCACATGATCC 58.708 52.381 0.00 0.00 38.20 3.36
1624 5434 4.180057 TGTTGCAAATGAAGGTGACAAAC 58.820 39.130 0.00 0.00 0.00 2.93
1627 5441 3.698539 TCTTGTTGCAAATGAAGGTGACA 59.301 39.130 0.00 0.00 0.00 3.58
1639 5453 0.657312 CGACAGCAGTCTTGTTGCAA 59.343 50.000 7.71 0.00 43.92 4.08
1714 5528 2.594529 CGAATCCACGGAACACTTTG 57.405 50.000 0.00 0.00 0.00 2.77
1735 5549 5.476599 ACCATTTTCACGGAGATGAAATTCA 59.523 36.000 0.00 0.00 45.55 2.57
1765 5579 7.910683 GCAAGTGGTAAAATAGTCTGCTAATTC 59.089 37.037 0.00 0.00 0.00 2.17
1782 5600 6.550108 TGGTAAAATTAAACTGGCAAGTGGTA 59.450 34.615 0.00 0.00 36.51 3.25
1823 5641 6.205658 GGCCTGACTAAGAATCCATCAATTAC 59.794 42.308 0.00 0.00 0.00 1.89
1828 5646 3.387962 AGGCCTGACTAAGAATCCATCA 58.612 45.455 3.11 0.00 0.00 3.07
1829 5647 4.429854 AAGGCCTGACTAAGAATCCATC 57.570 45.455 5.69 0.00 0.00 3.51
1838 5669 8.593945 AAATGAATAATCAAAGGCCTGACTAA 57.406 30.769 5.69 0.00 39.49 2.24
1858 5689 8.083462 TGCTATATAAATGGACGACGTAAATGA 58.917 33.333 0.00 0.00 0.00 2.57
1870 5701 5.928976 AGTGCACACTGCTATATAAATGGA 58.071 37.500 21.04 0.00 45.31 3.41
1884 5715 1.546029 TGAGAATAGCGAGTGCACACT 59.454 47.619 21.04 15.32 46.23 3.55
1904 5735 9.220767 GATTGAGTAAGTTCAGTACAGGAATTT 57.779 33.333 11.05 11.05 0.00 1.82
1968 5804 8.798402 CCTGAGATATTTCGAGACCTTAATACT 58.202 37.037 0.00 0.00 0.00 2.12
2011 5847 6.562640 CGATGCAACTGGTCAAAATTCAAAAG 60.563 38.462 0.00 0.00 0.00 2.27
2038 5877 5.318630 ACGGAGGGAGTAGATTCTAGATTC 58.681 45.833 6.54 6.54 0.00 2.52
2050 5889 6.608405 TCTTATATTTGTGAACGGAGGGAGTA 59.392 38.462 0.00 0.00 0.00 2.59
2051 5890 5.424252 TCTTATATTTGTGAACGGAGGGAGT 59.576 40.000 0.00 0.00 0.00 3.85
2052 5891 5.914033 TCTTATATTTGTGAACGGAGGGAG 58.086 41.667 0.00 0.00 0.00 4.30
2053 5892 5.943349 TCTTATATTTGTGAACGGAGGGA 57.057 39.130 0.00 0.00 0.00 4.20
2054 5893 5.049405 GCATCTTATATTTGTGAACGGAGGG 60.049 44.000 0.00 0.00 0.00 4.30
2055 5894 5.760253 AGCATCTTATATTTGTGAACGGAGG 59.240 40.000 0.00 0.00 0.00 4.30
2056 5895 6.851222 AGCATCTTATATTTGTGAACGGAG 57.149 37.500 0.00 0.00 0.00 4.63
2057 5896 7.415095 CCAAAGCATCTTATATTTGTGAACGGA 60.415 37.037 0.00 0.00 32.09 4.69
2058 5897 6.692681 CCAAAGCATCTTATATTTGTGAACGG 59.307 38.462 0.00 0.00 32.09 4.44
2059 5898 6.692681 CCCAAAGCATCTTATATTTGTGAACG 59.307 38.462 0.00 0.00 32.09 3.95
2060 5899 7.547227 ACCCAAAGCATCTTATATTTGTGAAC 58.453 34.615 0.00 0.00 32.09 3.18
2061 5900 7.716799 ACCCAAAGCATCTTATATTTGTGAA 57.283 32.000 0.00 0.00 32.09 3.18
2062 5901 8.995027 ATACCCAAAGCATCTTATATTTGTGA 57.005 30.769 0.00 0.00 32.09 3.58
2071 5910 8.859090 CCATATTGAAATACCCAAAGCATCTTA 58.141 33.333 0.00 0.00 0.00 2.10
2072 5911 7.564660 TCCATATTGAAATACCCAAAGCATCTT 59.435 33.333 0.00 0.00 0.00 2.40
2073 5912 7.014615 GTCCATATTGAAATACCCAAAGCATCT 59.985 37.037 0.00 0.00 0.00 2.90
2074 5913 7.147976 GTCCATATTGAAATACCCAAAGCATC 58.852 38.462 0.00 0.00 0.00 3.91
2075 5914 6.041979 GGTCCATATTGAAATACCCAAAGCAT 59.958 38.462 0.00 0.00 0.00 3.79
2076 5915 5.362430 GGTCCATATTGAAATACCCAAAGCA 59.638 40.000 0.00 0.00 0.00 3.91
2077 5916 5.362430 TGGTCCATATTGAAATACCCAAAGC 59.638 40.000 0.00 0.00 0.00 3.51
2078 5917 6.379703 TGTGGTCCATATTGAAATACCCAAAG 59.620 38.462 0.00 0.00 0.00 2.77
2079 5918 6.256819 TGTGGTCCATATTGAAATACCCAAA 58.743 36.000 0.00 0.00 0.00 3.28
2080 5919 5.832221 TGTGGTCCATATTGAAATACCCAA 58.168 37.500 0.00 0.00 0.00 4.12
2081 5920 5.458451 TGTGGTCCATATTGAAATACCCA 57.542 39.130 0.00 0.00 0.00 4.51
2082 5921 6.148811 CGTATGTGGTCCATATTGAAATACCC 59.851 42.308 6.41 0.00 38.29 3.69
2083 5922 6.148811 CCGTATGTGGTCCATATTGAAATACC 59.851 42.308 6.41 0.00 38.29 2.73
2084 5923 6.932400 TCCGTATGTGGTCCATATTGAAATAC 59.068 38.462 6.41 0.00 38.29 1.89
2085 5924 6.932400 GTCCGTATGTGGTCCATATTGAAATA 59.068 38.462 6.41 0.00 38.29 1.40
2086 5925 5.763204 GTCCGTATGTGGTCCATATTGAAAT 59.237 40.000 6.41 0.00 38.29 2.17
2087 5926 5.104693 AGTCCGTATGTGGTCCATATTGAAA 60.105 40.000 6.41 0.00 38.29 2.69
2088 5927 4.407621 AGTCCGTATGTGGTCCATATTGAA 59.592 41.667 6.41 0.00 38.29 2.69
2089 5928 3.964688 AGTCCGTATGTGGTCCATATTGA 59.035 43.478 6.41 0.00 38.29 2.57
2090 5929 4.058124 CAGTCCGTATGTGGTCCATATTG 58.942 47.826 6.41 0.51 38.29 1.90
2091 5930 3.964688 TCAGTCCGTATGTGGTCCATATT 59.035 43.478 6.41 0.00 38.29 1.28
2092 5931 3.572642 TCAGTCCGTATGTGGTCCATAT 58.427 45.455 6.35 6.35 38.29 1.78
2093 5932 3.021177 TCAGTCCGTATGTGGTCCATA 57.979 47.619 0.00 0.00 34.86 2.74
2094 5933 1.860641 TCAGTCCGTATGTGGTCCAT 58.139 50.000 0.00 0.00 37.58 3.41
2095 5934 1.634960 TTCAGTCCGTATGTGGTCCA 58.365 50.000 0.00 0.00 0.00 4.02
2096 5935 2.754946 TTTCAGTCCGTATGTGGTCC 57.245 50.000 0.00 0.00 0.00 4.46
2097 5936 3.857052 TCATTTCAGTCCGTATGTGGTC 58.143 45.455 0.00 0.00 0.00 4.02
2098 5937 3.260884 ACTCATTTCAGTCCGTATGTGGT 59.739 43.478 0.00 0.00 0.00 4.16
2099 5938 3.618594 CACTCATTTCAGTCCGTATGTGG 59.381 47.826 0.00 0.00 0.00 4.17
2100 5939 4.494484 TCACTCATTTCAGTCCGTATGTG 58.506 43.478 0.00 0.00 0.00 3.21
2101 5940 4.801330 TCACTCATTTCAGTCCGTATGT 57.199 40.909 0.00 0.00 0.00 2.29
2102 5941 4.929211 TGTTCACTCATTTCAGTCCGTATG 59.071 41.667 0.00 0.00 0.00 2.39
2103 5942 5.147330 TGTTCACTCATTTCAGTCCGTAT 57.853 39.130 0.00 0.00 0.00 3.06
2104 5943 4.594123 TGTTCACTCATTTCAGTCCGTA 57.406 40.909 0.00 0.00 0.00 4.02
2105 5944 3.469008 TGTTCACTCATTTCAGTCCGT 57.531 42.857 0.00 0.00 0.00 4.69
2106 5945 4.035091 TGTTTGTTCACTCATTTCAGTCCG 59.965 41.667 0.00 0.00 0.00 4.79
2107 5946 5.163663 TGTGTTTGTTCACTCATTTCAGTCC 60.164 40.000 0.00 0.00 38.90 3.85
2108 5947 5.739161 GTGTGTTTGTTCACTCATTTCAGTC 59.261 40.000 0.00 0.00 38.90 3.51
2109 5948 5.415701 AGTGTGTTTGTTCACTCATTTCAGT 59.584 36.000 0.00 0.00 40.28 3.41
2110 5949 5.883661 AGTGTGTTTGTTCACTCATTTCAG 58.116 37.500 0.00 0.00 40.28 3.02
2111 5950 5.895636 AGTGTGTTTGTTCACTCATTTCA 57.104 34.783 0.00 0.00 40.28 2.69
2112 5951 8.583765 GTTTTAGTGTGTTTGTTCACTCATTTC 58.416 33.333 1.08 0.00 42.77 2.17
2113 5952 7.272515 CGTTTTAGTGTGTTTGTTCACTCATTT 59.727 33.333 1.08 0.00 42.77 2.32
2114 5953 6.745450 CGTTTTAGTGTGTTTGTTCACTCATT 59.255 34.615 1.08 0.00 42.77 2.57
2115 5954 6.128117 ACGTTTTAGTGTGTTTGTTCACTCAT 60.128 34.615 1.08 0.00 42.77 2.90
2116 5955 5.179742 ACGTTTTAGTGTGTTTGTTCACTCA 59.820 36.000 1.08 0.00 42.77 3.41
2117 5956 5.506832 CACGTTTTAGTGTGTTTGTTCACTC 59.493 40.000 1.08 0.00 42.77 3.51
2118 5957 5.387279 CACGTTTTAGTGTGTTTGTTCACT 58.613 37.500 0.00 0.00 45.21 3.41
2119 5958 5.658674 CACGTTTTAGTGTGTTTGTTCAC 57.341 39.130 0.00 0.00 37.35 3.18
2130 5969 6.260377 TCGGATGTATAGACACGTTTTAGTG 58.740 40.000 0.00 0.00 46.83 2.74
2131 5970 6.441093 TCGGATGTATAGACACGTTTTAGT 57.559 37.500 0.00 0.00 38.76 2.24
2132 5971 7.646526 TGAATCGGATGTATAGACACGTTTTAG 59.353 37.037 0.00 0.00 38.76 1.85
2133 5972 7.433131 GTGAATCGGATGTATAGACACGTTTTA 59.567 37.037 0.00 0.00 38.76 1.52
2134 5973 6.255020 GTGAATCGGATGTATAGACACGTTTT 59.745 38.462 0.00 0.00 38.76 2.43
2135 5974 5.747197 GTGAATCGGATGTATAGACACGTTT 59.253 40.000 0.00 0.00 38.76 3.60
2136 5975 5.163591 TGTGAATCGGATGTATAGACACGTT 60.164 40.000 0.00 0.00 38.76 3.99
2137 5976 4.337274 TGTGAATCGGATGTATAGACACGT 59.663 41.667 0.00 0.00 38.76 4.49
2138 5977 4.855531 TGTGAATCGGATGTATAGACACG 58.144 43.478 0.00 0.00 38.76 4.49
2139 5978 7.534085 TTTTGTGAATCGGATGTATAGACAC 57.466 36.000 0.00 0.00 38.76 3.67
2181 6020 9.004231 AGTTTAGTACTCCCTCCATTCATAAAT 57.996 33.333 0.00 0.00 28.23 1.40
2182 6021 8.265055 CAGTTTAGTACTCCCTCCATTCATAAA 58.735 37.037 0.00 0.00 33.85 1.40
2183 6022 7.622081 TCAGTTTAGTACTCCCTCCATTCATAA 59.378 37.037 0.00 0.00 33.85 1.90
2184 6023 7.130099 TCAGTTTAGTACTCCCTCCATTCATA 58.870 38.462 0.00 0.00 33.85 2.15
2185 6024 5.964477 TCAGTTTAGTACTCCCTCCATTCAT 59.036 40.000 0.00 0.00 33.85 2.57
2186 6025 5.338632 TCAGTTTAGTACTCCCTCCATTCA 58.661 41.667 0.00 0.00 33.85 2.57
2187 6026 5.934402 TCAGTTTAGTACTCCCTCCATTC 57.066 43.478 0.00 0.00 33.85 2.67
2188 6027 5.367060 GGATCAGTTTAGTACTCCCTCCATT 59.633 44.000 0.00 0.00 33.85 3.16
2189 6028 4.902448 GGATCAGTTTAGTACTCCCTCCAT 59.098 45.833 0.00 0.00 33.85 3.41
2190 6029 4.287552 GGATCAGTTTAGTACTCCCTCCA 58.712 47.826 0.00 0.00 33.85 3.86
2191 6030 3.642377 GGGATCAGTTTAGTACTCCCTCC 59.358 52.174 0.00 0.00 36.13 4.30
2192 6031 4.342665 CAGGGATCAGTTTAGTACTCCCTC 59.657 50.000 11.19 0.00 43.54 4.30
2193 6032 4.264895 ACAGGGATCAGTTTAGTACTCCCT 60.265 45.833 8.84 8.84 45.29 4.20
2194 6033 4.031611 ACAGGGATCAGTTTAGTACTCCC 58.968 47.826 0.00 0.93 38.26 4.30
2195 6034 5.892686 ACTACAGGGATCAGTTTAGTACTCC 59.107 44.000 0.00 0.00 33.85 3.85
2196 6035 6.829811 AGACTACAGGGATCAGTTTAGTACTC 59.170 42.308 0.00 0.00 33.85 2.59
2197 6036 6.603997 CAGACTACAGGGATCAGTTTAGTACT 59.396 42.308 0.00 0.00 37.68 2.73
2198 6037 6.680872 GCAGACTACAGGGATCAGTTTAGTAC 60.681 46.154 0.00 0.00 0.00 2.73
2235 6075 4.491676 CATGGCTTTCTTTCAGTCAATGG 58.508 43.478 0.00 0.00 27.31 3.16
2242 6082 4.219070 TGTGATTCCATGGCTTTCTTTCAG 59.781 41.667 6.96 0.00 0.00 3.02
2244 6084 4.789012 TGTGATTCCATGGCTTTCTTTC 57.211 40.909 6.96 0.00 0.00 2.62
2334 6180 5.473066 AGGCAATAAACAGAGCAAAACAT 57.527 34.783 0.00 0.00 0.00 2.71
2387 6233 6.488683 AGAGGATAGTAGCTTCTGTGTACATC 59.511 42.308 2.65 0.00 0.00 3.06
2449 6304 6.072064 GCCAGATCCAGGATCAATTTTCTATG 60.072 42.308 28.30 15.23 41.12 2.23
2450 6305 6.008960 GCCAGATCCAGGATCAATTTTCTAT 58.991 40.000 28.30 4.38 41.12 1.98
2453 6308 3.956199 TGCCAGATCCAGGATCAATTTTC 59.044 43.478 28.30 12.79 41.12 2.29
2484 6339 6.238731 GCGAATTGACATCCCTGAATATTCAA 60.239 38.462 18.47 5.27 36.64 2.69
2486 6341 5.239306 TGCGAATTGACATCCCTGAATATTC 59.761 40.000 8.60 8.60 0.00 1.75
2487 6342 5.132502 TGCGAATTGACATCCCTGAATATT 58.867 37.500 0.00 0.00 0.00 1.28
2497 6352 4.093408 ACATGTACACTGCGAATTGACATC 59.907 41.667 0.00 0.00 0.00 3.06
2501 6356 3.398406 ACACATGTACACTGCGAATTGA 58.602 40.909 0.00 0.00 0.00 2.57
2507 6362 5.748630 AGATATACAACACATGTACACTGCG 59.251 40.000 0.00 0.00 46.90 5.18
2522 6377 9.988815 GAGAATAGCCTTGAGAAAGATATACAA 57.011 33.333 0.00 0.00 0.00 2.41
2535 6390 3.273434 GCACACATGAGAATAGCCTTGA 58.727 45.455 0.00 0.00 0.00 3.02
2544 6399 5.572511 GCGAAAAATAATGCACACATGAGAA 59.427 36.000 0.00 0.00 36.36 2.87
2545 6400 5.094812 GCGAAAAATAATGCACACATGAGA 58.905 37.500 0.00 0.00 36.36 3.27
2735 6590 7.094677 GGATGGTTCAAAGCAAAGCAAAAATAT 60.095 33.333 0.00 0.00 40.14 1.28
2736 6591 6.204495 GGATGGTTCAAAGCAAAGCAAAAATA 59.796 34.615 0.00 0.00 40.14 1.40
2819 6675 4.940046 AGAAGCTGATATGGGCATAATTCG 59.060 41.667 0.00 0.00 0.00 3.34
2820 6676 8.517062 AATAGAAGCTGATATGGGCATAATTC 57.483 34.615 0.00 0.00 0.00 2.17
2869 6726 4.396166 CCAACACTGACCAGCCTTAAATAG 59.604 45.833 0.00 0.00 0.00 1.73
2870 6727 4.202524 ACCAACACTGACCAGCCTTAAATA 60.203 41.667 0.00 0.00 0.00 1.40
2871 6728 3.157087 CCAACACTGACCAGCCTTAAAT 58.843 45.455 0.00 0.00 0.00 1.40
2875 6732 1.136828 TACCAACACTGACCAGCCTT 58.863 50.000 0.00 0.00 0.00 4.35
2927 6784 2.168496 AGCGACTGGACTGCTACTAAA 58.832 47.619 0.00 0.00 37.15 1.85
2992 6855 5.680619 TCAGTTGACAGTTCAGTGGTTTAT 58.319 37.500 0.00 0.00 31.71 1.40
3037 6901 3.054875 AGTGCATCCATTGTAAGCAGAGA 60.055 43.478 0.00 0.00 35.66 3.10
3076 6940 7.147976 AGGACTGCACAAAGTTTTATGAAATC 58.852 34.615 1.53 0.00 0.00 2.17
3192 7064 5.794894 TCCTATTCAGTCTTTCAGTGGAAC 58.205 41.667 0.00 0.00 31.35 3.62
3193 7065 6.433847 TTCCTATTCAGTCTTTCAGTGGAA 57.566 37.500 0.00 0.00 0.00 3.53
3194 7066 6.043243 ACTTTCCTATTCAGTCTTTCAGTGGA 59.957 38.462 0.00 0.00 0.00 4.02
3195 7067 6.234177 ACTTTCCTATTCAGTCTTTCAGTGG 58.766 40.000 0.00 0.00 0.00 4.00
3196 7068 7.736447 AACTTTCCTATTCAGTCTTTCAGTG 57.264 36.000 0.00 0.00 0.00 3.66
3201 7073 8.951243 GCTCATAAACTTTCCTATTCAGTCTTT 58.049 33.333 0.00 0.00 0.00 2.52
3202 7074 7.278868 CGCTCATAAACTTTCCTATTCAGTCTT 59.721 37.037 0.00 0.00 0.00 3.01
3203 7075 6.758886 CGCTCATAAACTTTCCTATTCAGTCT 59.241 38.462 0.00 0.00 0.00 3.24
3204 7076 6.757010 TCGCTCATAAACTTTCCTATTCAGTC 59.243 38.462 0.00 0.00 0.00 3.51
3205 7077 6.640518 TCGCTCATAAACTTTCCTATTCAGT 58.359 36.000 0.00 0.00 0.00 3.41
3206 7078 6.980978 TCTCGCTCATAAACTTTCCTATTCAG 59.019 38.462 0.00 0.00 0.00 3.02
3279 7161 6.265196 ACAAATGCTTACACTGAAATTCCTCA 59.735 34.615 0.00 0.00 0.00 3.86
3310 7192 9.551734 TTCAACTACATGATATTCTGAAGGATG 57.448 33.333 0.00 0.00 0.00 3.51
3317 7203 6.018425 AGCGCTTTCAACTACATGATATTCTG 60.018 38.462 2.64 0.00 0.00 3.02
3359 7372 4.494199 GCAGCCAATAACTGATCGTAACAC 60.494 45.833 0.00 0.00 37.32 3.32
3366 7531 3.382546 ACCATTGCAGCCAATAACTGATC 59.617 43.478 0.00 0.00 39.60 2.92
3368 7533 2.754552 GACCATTGCAGCCAATAACTGA 59.245 45.455 0.00 0.00 39.60 3.41
3384 7550 0.467844 TTTGTGCAGTGCCAGACCAT 60.468 50.000 13.72 0.00 0.00 3.55
3477 7666 8.457757 ACTTAGGGATCATACTAATAGGACAGT 58.542 37.037 0.00 0.00 0.00 3.55
3481 7670 6.668283 GCCACTTAGGGATCATACTAATAGGA 59.332 42.308 16.90 0.00 38.09 2.94
3484 7673 6.785466 TGTGCCACTTAGGGATCATACTAATA 59.215 38.462 0.00 0.00 41.14 0.98
3491 7681 3.202818 TCATTGTGCCACTTAGGGATCAT 59.797 43.478 0.00 0.00 41.14 2.45
3546 7742 4.918588 AGCCTAGCTACCTTTGCTAAAAA 58.081 39.130 0.00 0.00 41.70 1.94
3549 7745 4.569719 AAAGCCTAGCTACCTTTGCTAA 57.430 40.909 11.81 0.00 41.70 3.09
3642 7838 1.687493 GGGTGTCTCTCTCCCCCAG 60.687 68.421 0.00 0.00 42.33 4.45
3643 7839 2.450243 GGGTGTCTCTCTCCCCCA 59.550 66.667 0.00 0.00 42.33 4.96
3644 7840 2.760385 CGGGTGTCTCTCTCCCCC 60.760 72.222 0.00 0.00 44.52 5.40
3648 7844 1.670791 CTAGGTCGGGTGTCTCTCTC 58.329 60.000 0.00 0.00 0.00 3.20
3660 7856 1.470890 GCTCATAGGCTAGCTAGGTCG 59.529 57.143 22.10 0.00 35.80 4.79
3667 7863 8.608844 TCTAATTTTTAAGCTCATAGGCTAGC 57.391 34.615 6.04 6.04 42.24 3.42
3683 7879 6.877611 TTGAACCTCGAGCTTCTAATTTTT 57.122 33.333 18.74 0.00 0.00 1.94
3697 7893 7.617533 ATTGTAATTTTTCGTTTGAACCTCG 57.382 32.000 0.00 0.00 32.71 4.63
3728 7924 6.939163 AGAGATCTTGCAAACTGTTAGAATGT 59.061 34.615 0.00 0.00 0.00 2.71
3747 7943 5.012328 ACGGGAGTGTTATCAAAGAGATC 57.988 43.478 0.00 0.00 44.82 2.75
3758 7954 3.896888 TGAAGGAAACTACGGGAGTGTTA 59.103 43.478 0.00 0.00 46.80 2.41
3768 7964 4.515567 CACCAAGGAGTTGAAGGAAACTAC 59.484 45.833 0.00 0.00 42.68 2.73
3778 7974 6.599244 GTCAATCATATTCACCAAGGAGTTGA 59.401 38.462 0.00 0.00 35.46 3.18
3801 7997 0.165944 CCGATTGCAAACAGGTCGTC 59.834 55.000 15.85 1.21 35.32 4.20
3802 7998 0.250124 TCCGATTGCAAACAGGTCGT 60.250 50.000 15.85 0.00 35.32 4.34
3803 7999 1.086696 ATCCGATTGCAAACAGGTCG 58.913 50.000 1.71 7.90 36.25 4.79
3819 8015 1.799403 CAGCATCTTCAGATCGCATCC 59.201 52.381 11.41 0.00 33.83 3.51
3837 8033 1.214589 GCAAGACTTGGGCATGCAG 59.785 57.895 21.36 11.12 37.00 4.41
3853 8049 1.304052 AGGCTTTATGGTTGGCGCA 60.304 52.632 10.83 0.00 0.00 6.09
3855 8051 1.017387 GAGAGGCTTTATGGTTGGCG 58.983 55.000 0.00 0.00 0.00 5.69
3879 8075 4.500716 CCTGCTACTCTAGAAGCTTTAGCC 60.501 50.000 18.35 0.00 43.38 3.93
3905 8102 1.671979 AGTGATTCATGGCATCGGTG 58.328 50.000 0.00 0.00 0.00 4.94
3907 8104 1.802960 GCTAGTGATTCATGGCATCGG 59.197 52.381 0.00 0.00 0.00 4.18
3908 8105 2.222678 GTGCTAGTGATTCATGGCATCG 59.777 50.000 0.00 0.00 32.38 3.84
3909 8106 3.250280 CAGTGCTAGTGATTCATGGCATC 59.750 47.826 0.00 0.00 32.38 3.91
3930 8127 3.526899 TGGTTCCTATCTTGGGTCTTCA 58.473 45.455 0.00 0.00 0.00 3.02
4037 9462 1.416401 TGACACTGTTCCTGACTTCCC 59.584 52.381 0.00 0.00 0.00 3.97
4039 9464 4.816385 TGAAATGACACTGTTCCTGACTTC 59.184 41.667 0.00 0.00 0.00 3.01
4096 9523 5.297776 CACCATGACTGAACTTCAAAGACTT 59.702 40.000 0.00 0.00 0.00 3.01
4119 9546 6.306987 AGAAAGGCTTTTAGTTTGGAGATCA 58.693 36.000 14.66 0.00 0.00 2.92
4177 9604 0.108377 TGTACTCGTTCATGCGGCAT 60.108 50.000 10.23 10.23 0.00 4.40
4246 9673 2.282407 GTGTGTTGGACCGTAAAGTGT 58.718 47.619 0.00 0.00 0.00 3.55
4271 9698 3.582647 TGGTCAGAGAGTGCCATTTCTAA 59.417 43.478 0.00 0.00 30.20 2.10
4364 9795 0.324830 ACTCTCTCTACTGTGGGGGC 60.325 60.000 0.00 0.00 0.00 5.80
4374 9805 3.034635 GGCCATCCTTGAACTCTCTCTA 58.965 50.000 0.00 0.00 0.00 2.43
4431 9866 2.133553 TCATGTGCACAAAAATTGCCG 58.866 42.857 25.72 4.16 39.39 5.69
4442 9877 4.224433 CAAGTTGAGTTCATCATGTGCAC 58.776 43.478 10.75 10.75 37.89 4.57
4477 9913 6.486320 TCAAAATCAAGTGAATGCAGTGAGTA 59.514 34.615 0.00 0.00 0.00 2.59
4553 9993 2.284754 TTTCACCAGGCAACAGCATA 57.715 45.000 0.00 0.00 41.41 3.14
4579 10020 4.649674 ACAAAGCCTCGTCTGAATCCTATA 59.350 41.667 0.00 0.00 0.00 1.31
4589 10030 2.146342 CATGTTCACAAAGCCTCGTCT 58.854 47.619 0.00 0.00 0.00 4.18
4630 10071 1.933853 GTGTGATAACTCGTGATGGCC 59.066 52.381 0.00 0.00 0.00 5.36
4633 10074 5.105063 ACTCATGTGTGATAACTCGTGATG 58.895 41.667 7.49 5.46 32.98 3.07
4709 10168 4.029529 CGATGATGTAGAATATCGCACACG 59.970 45.833 0.00 0.00 36.43 4.49
4710 10169 5.427366 CGATGATGTAGAATATCGCACAC 57.573 43.478 0.00 0.00 36.43 3.82
4722 10181 4.973396 ACAAATTGTGTGCGATGATGTAG 58.027 39.130 0.00 0.00 39.72 2.74
4812 10427 1.158011 GTTCGTTCGAAAATACGCGC 58.842 50.000 5.73 0.00 37.66 6.86
4818 10461 2.869801 TGCTCACAGTTCGTTCGAAAAT 59.130 40.909 9.19 0.00 0.00 1.82
4819 10462 2.272678 TGCTCACAGTTCGTTCGAAAA 58.727 42.857 9.19 0.00 0.00 2.29
4852 10495 4.215613 GGGTCATAAGACAACACTTTCACC 59.784 45.833 0.00 0.00 46.80 4.02
4884 10527 1.475280 GGGCGGTTAGGAAATCAAACC 59.525 52.381 6.78 6.78 39.44 3.27
4896 10539 1.555477 CCCTACTGTTGGGGCGGTTA 61.555 60.000 18.20 0.00 40.97 2.85
4898 10541 3.327404 CCCTACTGTTGGGGCGGT 61.327 66.667 18.20 0.00 40.97 5.68
4920 10563 6.634805 AGTTGTAGGATGTTGTAGATCAGTG 58.365 40.000 0.00 0.00 0.00 3.66
4929 10576 2.897969 ACGAGGAGTTGTAGGATGTTGT 59.102 45.455 0.00 0.00 0.00 3.32
5075 11074 4.899239 GGCCGGCTGAGGATCGTG 62.899 72.222 28.56 0.00 38.61 4.35
5220 11241 2.038387 TCATCGGTCGATCTCACTGA 57.962 50.000 2.59 5.83 33.61 3.41
5233 11254 1.002792 TCTCAAGTACGCGATCATCGG 60.003 52.381 15.93 1.43 40.84 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.