Multiple sequence alignment - TraesCS2D01G506500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G506500 chr2D 100.000 5685 0 0 1 5685 600323117 600317433 0.000000e+00 10499.0
1 TraesCS2D01G506500 chr2D 85.276 163 14 4 5522 5681 197746816 197746971 5.900000e-35 159.0
2 TraesCS2D01G506500 chr2A 91.035 4317 178 99 683 4903 733858506 733854303 0.000000e+00 5635.0
3 TraesCS2D01G506500 chr2A 87.033 509 31 23 9 501 733859329 733858840 5.010000e-150 542.0
4 TraesCS2D01G506500 chr2A 82.407 324 21 18 4990 5302 733854254 733853956 3.400000e-62 250.0
5 TraesCS2D01G506500 chr2A 87.006 177 19 2 5509 5681 350396389 350396565 4.490000e-46 196.0
6 TraesCS2D01G506500 chr2A 92.553 94 7 0 543 636 733858730 733858637 9.940000e-28 135.0
7 TraesCS2D01G506500 chr2A 100.000 37 0 0 636 672 733858573 733858537 1.020000e-07 69.4
8 TraesCS2D01G506500 chr2B 91.241 2740 137 47 2631 5310 730301056 730298360 0.000000e+00 3635.0
9 TraesCS2D01G506500 chr2B 86.600 2015 119 75 637 2597 730303169 730301252 0.000000e+00 2085.0
10 TraesCS2D01G506500 chr2B 89.637 386 11 11 42 405 730303846 730303468 1.120000e-126 464.0
11 TraesCS2D01G506500 chr2B 76.015 271 37 19 376 636 730303462 730303210 1.290000e-21 115.0
12 TraesCS2D01G506500 chr7D 86.364 198 16 9 5491 5681 527706276 527706083 7.470000e-49 206.0
13 TraesCS2D01G506500 chr4D 87.500 176 19 2 5509 5681 112864964 112865139 3.470000e-47 200.0
14 TraesCS2D01G506500 chr4D 91.304 46 1 3 5448 5490 105928507 105928462 6.150000e-05 60.2
15 TraesCS2D01G506500 chr3D 86.705 173 18 3 5513 5681 333005192 333005363 2.700000e-43 187.0
16 TraesCS2D01G506500 chr3D 83.471 121 20 0 4056 4176 504732930 504733050 4.660000e-21 113.0
17 TraesCS2D01G506500 chr1A 84.456 193 26 4 5491 5681 585581467 585581277 2.700000e-43 187.0
18 TraesCS2D01G506500 chr6B 85.311 177 20 4 5509 5681 501525612 501525786 1.630000e-40 178.0
19 TraesCS2D01G506500 chr6B 82.707 133 20 1 4055 4184 452176201 452176333 1.290000e-21 115.0
20 TraesCS2D01G506500 chr6B 91.803 61 3 1 5420 5478 643412945 643413005 3.650000e-12 84.2
21 TraesCS2D01G506500 chr6A 85.143 175 22 3 5509 5681 150919925 150919753 5.850000e-40 176.0
22 TraesCS2D01G506500 chr6A 84.211 133 18 1 4055 4184 432254300 432254168 5.980000e-25 126.0
23 TraesCS2D01G506500 chr5B 82.273 220 18 13 5455 5663 698468064 698468273 2.720000e-38 171.0
24 TraesCS2D01G506500 chr6D 83.459 133 19 1 4055 4184 291235621 291235753 2.780000e-23 121.0
25 TraesCS2D01G506500 chr3A 81.818 121 22 0 4056 4176 642921982 642922102 1.010000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G506500 chr2D 600317433 600323117 5684 True 10499.00 10499 100.00000 1 5685 1 chr2D.!!$R1 5684
1 TraesCS2D01G506500 chr2A 733853956 733859329 5373 True 1326.28 5635 90.60560 9 5302 5 chr2A.!!$R1 5293
2 TraesCS2D01G506500 chr2B 730298360 730303846 5486 True 1574.75 3635 85.87325 42 5310 4 chr2B.!!$R1 5268

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 1150 0.043334 TAGCCTTGCTCCTTCCCTCT 59.957 55.000 0.00 0.00 40.44 3.69 F
1152 1398 0.031585 TTCTTGTGGTCGTCGGTCTG 59.968 55.000 0.00 0.00 0.00 3.51 F
1170 1416 0.455815 TGCCGATATCGATCCATCCG 59.544 55.000 26.32 7.95 43.02 4.18 F
1171 1417 0.872021 GCCGATATCGATCCATCCGC 60.872 60.000 26.32 14.01 43.02 5.54 F
2160 2457 0.899019 GGTGTCTTCTCCCTCCAGTC 59.101 60.000 0.00 0.00 0.00 3.51 F
2350 2653 1.339727 ACCAACTTCCCGGTAAGATGC 60.340 52.381 14.49 0.00 32.31 3.91 F
3596 4116 1.534595 CTGAGCACTTTCTTCCTGCAC 59.465 52.381 0.00 0.00 33.06 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2740 3221 0.803768 CGCCACGAGAGAATCCACTG 60.804 60.000 0.00 0.00 33.66 3.66 R
2830 3311 0.884259 TGACACCACATGCAAGACGG 60.884 55.000 0.00 0.00 0.00 4.79 R
3042 3532 2.064573 GTAACCAATGGTTGCAGTGC 57.935 50.000 26.55 8.58 46.35 4.40 R
3092 3582 7.155328 ACTAGCAAAGATATATCCTGGTTTCG 58.845 38.462 17.51 11.42 0.00 3.46 R
3797 4317 0.608130 TCCTAGACAGCAATGCACGT 59.392 50.000 8.35 3.67 0.00 4.49 R
4126 4657 0.806492 GCCCGATCTCGAAGTTGGTC 60.806 60.000 0.22 0.00 43.02 4.02 R
5343 5903 0.174617 TCTGTGTGTTGAGTGCACGA 59.825 50.000 12.01 0.00 39.53 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.771531 TATACTGGCCCAGGTCGAGCA 62.772 57.143 16.70 0.00 35.51 4.26
351 363 4.883240 ATGCATGCATGGACGCTA 57.117 50.000 31.74 1.06 35.03 4.26
352 364 3.334413 ATGCATGCATGGACGCTAT 57.666 47.368 31.74 5.52 35.03 2.97
396 426 3.819393 GTACACACGACACGACCG 58.181 61.111 0.00 0.00 0.00 4.79
400 430 2.592574 ACACGACACGACCGAGGA 60.593 61.111 0.00 0.00 0.00 3.71
405 435 1.805945 GACACGACCGAGGACATGC 60.806 63.158 0.00 0.00 0.00 4.06
407 437 1.374125 CACGACCGAGGACATGCAA 60.374 57.895 0.00 0.00 0.00 4.08
410 440 1.086696 CGACCGAGGACATGCAAATT 58.913 50.000 0.00 0.00 0.00 1.82
411 441 1.062587 CGACCGAGGACATGCAAATTC 59.937 52.381 0.00 0.00 0.00 2.17
421 451 2.570365 TGCAAATTCGCATGGAGCT 58.430 47.368 0.00 0.00 42.61 4.09
422 452 0.889994 TGCAAATTCGCATGGAGCTT 59.110 45.000 0.00 0.00 42.61 3.74
423 453 1.273048 TGCAAATTCGCATGGAGCTTT 59.727 42.857 0.00 0.00 42.61 3.51
424 454 2.288948 TGCAAATTCGCATGGAGCTTTT 60.289 40.909 0.00 0.00 42.61 2.27
425 455 2.346545 GCAAATTCGCATGGAGCTTTTC 59.653 45.455 0.00 0.00 42.61 2.29
426 456 3.841643 CAAATTCGCATGGAGCTTTTCT 58.158 40.909 0.00 0.00 42.61 2.52
428 458 0.523072 TTCGCATGGAGCTTTTCTGC 59.477 50.000 0.00 0.00 42.61 4.26
430 460 1.310933 CGCATGGAGCTTTTCTGCCT 61.311 55.000 0.00 0.00 42.61 4.75
431 461 0.172803 GCATGGAGCTTTTCTGCCTG 59.827 55.000 0.00 0.00 41.15 4.85
432 462 0.172803 CATGGAGCTTTTCTGCCTGC 59.827 55.000 0.00 0.00 31.33 4.85
435 465 1.212229 GAGCTTTTCTGCCTGCAGC 59.788 57.895 14.22 4.57 43.31 5.25
456 520 4.057428 GCGTCTCTGGAGCACGGT 62.057 66.667 17.18 0.00 34.73 4.83
482 546 3.047877 CACCTTCCGTTGGCCGAC 61.048 66.667 13.74 13.74 39.56 4.79
500 564 4.147449 CGAGCTGACCGGCATGGA 62.147 66.667 0.00 0.00 42.00 3.41
501 565 2.202987 GAGCTGACCGGCATGGAG 60.203 66.667 0.00 0.00 42.00 3.86
502 566 4.479993 AGCTGACCGGCATGGAGC 62.480 66.667 0.00 1.51 42.00 4.70
511 575 2.439156 GCATGGAGCCCTGGACAC 60.439 66.667 0.00 0.00 37.23 3.67
517 581 1.142748 GAGCCCTGGACACGATCAG 59.857 63.158 0.00 0.00 0.00 2.90
520 584 1.517832 CCCTGGACACGATCAGGTC 59.482 63.158 8.33 5.41 46.75 3.85
558 698 3.702045 AGAATGAAGAGGACCGGTAGAAG 59.298 47.826 7.34 0.00 0.00 2.85
564 704 3.090790 AGAGGACCGGTAGAAGAGAAAC 58.909 50.000 7.34 0.00 0.00 2.78
576 716 0.326264 AGAGAAACGAGCCAAGCCAT 59.674 50.000 0.00 0.00 0.00 4.40
580 720 0.322456 AAACGAGCCAAGCCATAGCA 60.322 50.000 0.00 0.00 43.56 3.49
581 721 0.745845 AACGAGCCAAGCCATAGCAG 60.746 55.000 0.00 0.00 43.56 4.24
675 886 2.422235 CCACCTGTAAAACACCACCTCA 60.422 50.000 0.00 0.00 0.00 3.86
677 888 2.227194 CCTGTAAAACACCACCTCACC 58.773 52.381 0.00 0.00 0.00 4.02
678 889 2.158667 CCTGTAAAACACCACCTCACCT 60.159 50.000 0.00 0.00 0.00 4.00
688 919 4.514577 CCTCACCTACGCCGCTGG 62.515 72.222 0.00 0.00 0.00 4.85
905 1138 2.028203 CCCCACAAAACCAATAGCCTTG 60.028 50.000 0.00 0.00 0.00 3.61
911 1144 2.907458 AACCAATAGCCTTGCTCCTT 57.093 45.000 0.00 0.00 40.44 3.36
913 1146 1.064389 ACCAATAGCCTTGCTCCTTCC 60.064 52.381 0.00 0.00 40.44 3.46
917 1150 0.043334 TAGCCTTGCTCCTTCCCTCT 59.957 55.000 0.00 0.00 40.44 3.69
919 1152 1.911471 CCTTGCTCCTTCCCTCTCC 59.089 63.158 0.00 0.00 0.00 3.71
922 1155 3.157949 GCTCCTTCCCTCTCCCCG 61.158 72.222 0.00 0.00 0.00 5.73
923 1156 3.157949 CTCCTTCCCTCTCCCCGC 61.158 72.222 0.00 0.00 0.00 6.13
924 1157 4.798682 TCCTTCCCTCTCCCCGCC 62.799 72.222 0.00 0.00 0.00 6.13
925 1158 4.806339 CCTTCCCTCTCCCCGCCT 62.806 72.222 0.00 0.00 0.00 5.52
926 1159 3.157949 CTTCCCTCTCCCCGCCTC 61.158 72.222 0.00 0.00 0.00 4.70
927 1160 3.684628 TTCCCTCTCCCCGCCTCT 61.685 66.667 0.00 0.00 0.00 3.69
928 1161 3.680920 TTCCCTCTCCCCGCCTCTC 62.681 68.421 0.00 0.00 0.00 3.20
1075 1321 5.238624 TCACCACTGTGAGTACTACTACT 57.761 43.478 9.86 0.00 46.40 2.57
1086 1332 6.826893 GAGTACTACTACTCAACTACTCCG 57.173 45.833 0.00 0.00 45.92 4.63
1087 1333 5.115480 AGTACTACTACTCAACTACTCCGC 58.885 45.833 0.00 0.00 0.00 5.54
1089 1335 2.211250 ACTACTCAACTACTCCGCCA 57.789 50.000 0.00 0.00 0.00 5.69
1090 1336 1.817447 ACTACTCAACTACTCCGCCAC 59.183 52.381 0.00 0.00 0.00 5.01
1091 1337 2.093106 CTACTCAACTACTCCGCCACT 58.907 52.381 0.00 0.00 0.00 4.00
1092 1338 2.211250 ACTCAACTACTCCGCCACTA 57.789 50.000 0.00 0.00 0.00 2.74
1093 1339 2.736347 ACTCAACTACTCCGCCACTAT 58.264 47.619 0.00 0.00 0.00 2.12
1094 1340 3.097614 ACTCAACTACTCCGCCACTATT 58.902 45.455 0.00 0.00 0.00 1.73
1095 1341 4.275810 ACTCAACTACTCCGCCACTATTA 58.724 43.478 0.00 0.00 0.00 0.98
1096 1342 4.338682 ACTCAACTACTCCGCCACTATTAG 59.661 45.833 0.00 0.00 0.00 1.73
1097 1343 3.067742 TCAACTACTCCGCCACTATTAGC 59.932 47.826 0.00 0.00 0.00 3.09
1111 1357 3.942748 ACTATTAGCCTCGATCGATCTCC 59.057 47.826 19.78 7.26 0.00 3.71
1115 1361 0.242555 GCCTCGATCGATCTCCTTCC 59.757 60.000 19.78 3.34 0.00 3.46
1136 1382 3.513515 CCTCTCTTGCTCAGTTACCTTCT 59.486 47.826 0.00 0.00 0.00 2.85
1138 1384 4.887748 TCTCTTGCTCAGTTACCTTCTTG 58.112 43.478 0.00 0.00 0.00 3.02
1139 1385 4.345257 TCTCTTGCTCAGTTACCTTCTTGT 59.655 41.667 0.00 0.00 0.00 3.16
1140 1386 4.380531 TCTTGCTCAGTTACCTTCTTGTG 58.619 43.478 0.00 0.00 0.00 3.33
1141 1387 3.126001 TGCTCAGTTACCTTCTTGTGG 57.874 47.619 0.00 0.00 0.00 4.17
1142 1388 2.438021 TGCTCAGTTACCTTCTTGTGGT 59.562 45.455 0.00 0.00 41.28 4.16
1143 1389 3.067833 GCTCAGTTACCTTCTTGTGGTC 58.932 50.000 0.00 0.00 38.88 4.02
1145 1391 2.696707 TCAGTTACCTTCTTGTGGTCGT 59.303 45.455 0.00 0.00 38.88 4.34
1148 1394 0.599558 TACCTTCTTGTGGTCGTCGG 59.400 55.000 0.00 0.00 38.88 4.79
1149 1395 1.366366 CCTTCTTGTGGTCGTCGGT 59.634 57.895 0.00 0.00 0.00 4.69
1150 1396 0.666577 CCTTCTTGTGGTCGTCGGTC 60.667 60.000 0.00 0.00 0.00 4.79
1151 1397 0.314302 CTTCTTGTGGTCGTCGGTCT 59.686 55.000 0.00 0.00 0.00 3.85
1152 1398 0.031585 TTCTTGTGGTCGTCGGTCTG 59.968 55.000 0.00 0.00 0.00 3.51
1153 1399 2.022129 CTTGTGGTCGTCGGTCTGC 61.022 63.158 0.00 0.00 0.00 4.26
1154 1400 3.509137 TTGTGGTCGTCGGTCTGCC 62.509 63.158 0.00 0.00 0.00 4.85
1165 1411 3.723554 GGTCTGCCGATATCGATCC 57.276 57.895 26.32 15.22 43.02 3.36
1166 1412 0.888619 GGTCTGCCGATATCGATCCA 59.111 55.000 26.32 17.27 43.02 3.41
1167 1413 1.478510 GGTCTGCCGATATCGATCCAT 59.521 52.381 26.32 0.00 43.02 3.41
1168 1414 2.480416 GGTCTGCCGATATCGATCCATC 60.480 54.545 26.32 13.86 43.02 3.51
1169 1415 1.751351 TCTGCCGATATCGATCCATCC 59.249 52.381 26.32 6.02 43.02 3.51
1170 1416 0.455815 TGCCGATATCGATCCATCCG 59.544 55.000 26.32 7.95 43.02 4.18
1171 1417 0.872021 GCCGATATCGATCCATCCGC 60.872 60.000 26.32 14.01 43.02 5.54
1176 1422 1.183030 TATCGATCCATCCGCCCGTT 61.183 55.000 0.00 0.00 0.00 4.44
1186 1432 4.465512 CGCCCGTTGTGCTGATGC 62.466 66.667 0.00 0.00 40.20 3.91
1199 1452 1.077915 CTGATGCGTATGTGTGTGCA 58.922 50.000 0.00 0.00 42.22 4.57
1336 1601 4.417426 ACCACAACGGGAGGAATAATAG 57.583 45.455 0.15 0.00 40.22 1.73
1346 1611 2.035576 GAGGAATAATAGTGACGCCGGT 59.964 50.000 1.90 0.00 0.00 5.28
1347 1612 3.225104 AGGAATAATAGTGACGCCGGTA 58.775 45.455 1.90 0.00 0.00 4.02
1504 1769 4.143333 CGACCCGAAGATGCCGGT 62.143 66.667 1.90 0.00 45.14 5.28
1614 1879 1.949631 GGCGGTGGTCGATCGATTC 60.950 63.158 22.50 16.61 42.43 2.52
1622 1887 2.029020 TGGTCGATCGATTCATCCATCC 60.029 50.000 22.50 14.29 0.00 3.51
1624 1889 3.368843 GGTCGATCGATTCATCCATCCAT 60.369 47.826 22.50 0.00 0.00 3.41
1626 1891 3.766051 TCGATCGATTCATCCATCCATCT 59.234 43.478 15.15 0.00 0.00 2.90
1627 1892 4.949856 TCGATCGATTCATCCATCCATCTA 59.050 41.667 15.15 0.00 0.00 1.98
1628 1893 5.067023 TCGATCGATTCATCCATCCATCTAG 59.933 44.000 15.15 0.00 0.00 2.43
1629 1894 4.462508 TCGATTCATCCATCCATCTAGC 57.537 45.455 0.00 0.00 0.00 3.42
1630 1895 4.092279 TCGATTCATCCATCCATCTAGCT 58.908 43.478 0.00 0.00 0.00 3.32
1631 1896 5.264395 TCGATTCATCCATCCATCTAGCTA 58.736 41.667 0.00 0.00 0.00 3.32
1632 1897 5.359292 TCGATTCATCCATCCATCTAGCTAG 59.641 44.000 15.01 15.01 0.00 3.42
1648 1913 6.900194 TCTAGCTAGTATTTGCCCAAGAAAT 58.100 36.000 20.10 0.00 0.00 2.17
1767 2044 3.259064 CACACAGATTACCCAGTAACCG 58.741 50.000 0.00 0.00 30.49 4.44
1768 2045 2.277084 CACAGATTACCCAGTAACCGC 58.723 52.381 0.00 0.00 30.49 5.68
1770 2047 2.504175 ACAGATTACCCAGTAACCGCAT 59.496 45.455 0.00 0.00 30.49 4.73
1772 2049 2.132762 GATTACCCAGTAACCGCATCG 58.867 52.381 0.00 0.00 30.49 3.84
1817 2108 5.856126 TTAAGCTGTTCATTCGGTGTAAG 57.144 39.130 0.00 0.00 0.00 2.34
1831 2122 3.184581 CGGTGTAAGAAGCTGTTCTGAAC 59.815 47.826 13.49 13.49 42.59 3.18
1864 2156 6.313905 TCTTTTCCTATGCTCGATCAAGTTTC 59.686 38.462 0.00 0.00 0.00 2.78
1887 2179 2.286654 GCCTGCGCATCTGATTTTACTC 60.287 50.000 12.24 0.00 34.03 2.59
2003 2296 2.203153 GCCAAGGTGACCACACGT 60.203 61.111 3.63 0.00 46.77 4.49
2013 2306 3.005155 GGTGACCACACGTTACTACTCTT 59.995 47.826 0.00 0.00 46.77 2.85
2014 2307 3.979495 GTGACCACACGTTACTACTCTTG 59.021 47.826 0.00 0.00 37.28 3.02
2069 2366 2.357327 TGCACTCATCATTTTGCTGC 57.643 45.000 0.00 0.00 35.91 5.25
2070 2367 1.067425 TGCACTCATCATTTTGCTGCC 60.067 47.619 0.00 0.00 35.91 4.85
2071 2368 1.904144 CACTCATCATTTTGCTGCCG 58.096 50.000 0.00 0.00 0.00 5.69
2160 2457 0.899019 GGTGTCTTCTCCCTCCAGTC 59.101 60.000 0.00 0.00 0.00 3.51
2350 2653 1.339727 ACCAACTTCCCGGTAAGATGC 60.340 52.381 14.49 0.00 32.31 3.91
2387 2699 7.944061 CATGATTGCAAAAACTCCTGGATATA 58.056 34.615 1.71 0.00 0.00 0.86
2469 2781 2.422276 ATGCGGCAAGTGTTCTTTTC 57.578 45.000 6.82 0.00 0.00 2.29
2571 2883 9.144298 AGGTACATACATACATACATATAGGCC 57.856 37.037 0.00 0.00 0.00 5.19
2706 3187 5.700832 TGCTATTCAAGTGAATTTGACGAGT 59.299 36.000 11.58 0.00 41.64 4.18
2707 3188 6.871492 TGCTATTCAAGTGAATTTGACGAGTA 59.129 34.615 11.58 0.00 41.64 2.59
2740 3221 2.698855 TAATCTGGTGCAGGAAGAGC 57.301 50.000 0.00 0.00 31.51 4.09
2752 3233 2.500910 CAGGAAGAGCAGTGGATTCTCT 59.499 50.000 0.00 0.00 38.72 3.10
2804 3285 5.429762 ACAAGGTTCATATTCTCCTCCATGA 59.570 40.000 0.00 0.00 0.00 3.07
2814 3295 2.499693 TCTCCTCCATGATTTGCGTGTA 59.500 45.455 0.00 0.00 0.00 2.90
2816 3297 3.205338 TCCTCCATGATTTGCGTGTATG 58.795 45.455 0.00 0.00 0.00 2.39
2817 3298 2.945008 CCTCCATGATTTGCGTGTATGT 59.055 45.455 0.00 0.00 0.00 2.29
2818 3299 3.378112 CCTCCATGATTTGCGTGTATGTT 59.622 43.478 0.00 0.00 0.00 2.71
2819 3300 4.574421 CCTCCATGATTTGCGTGTATGTTA 59.426 41.667 0.00 0.00 0.00 2.41
2820 3301 5.065859 CCTCCATGATTTGCGTGTATGTTAA 59.934 40.000 0.00 0.00 0.00 2.01
2821 3302 5.874831 TCCATGATTTGCGTGTATGTTAAC 58.125 37.500 0.00 0.00 0.00 2.01
2822 3303 5.034152 CCATGATTTGCGTGTATGTTAACC 58.966 41.667 2.48 0.00 0.00 2.85
2823 3304 5.392487 CCATGATTTGCGTGTATGTTAACCA 60.392 40.000 2.48 0.00 0.00 3.67
2824 3305 5.888691 TGATTTGCGTGTATGTTAACCAT 57.111 34.783 2.48 0.00 37.58 3.55
2825 3306 6.986904 TGATTTGCGTGTATGTTAACCATA 57.013 33.333 2.48 0.00 34.86 2.74
2830 3311 5.574082 TGCGTGTATGTTAACCATATTTGC 58.426 37.500 2.48 7.09 38.29 3.68
2832 3313 5.201910 CGTGTATGTTAACCATATTTGCCG 58.798 41.667 2.48 0.00 38.29 5.69
2857 3338 5.534278 TCTTGCATGTGGTGTCATCTAAAAA 59.466 36.000 0.00 0.00 0.00 1.94
3014 3500 8.603898 TCTATTTCCTGTACTTAGTTGGATGA 57.396 34.615 0.00 0.00 0.00 2.92
3019 3505 8.603898 TTCCTGTACTTAGTTGGATGAAGATA 57.396 34.615 0.00 0.00 0.00 1.98
3042 3532 3.242518 TGCATGTTCGTCTACTTTCTCG 58.757 45.455 0.00 0.00 0.00 4.04
3050 3540 2.404215 GTCTACTTTCTCGCACTGCAA 58.596 47.619 1.11 0.00 0.00 4.08
3079 3569 5.069501 GTTACTAAACCAGGACATCTCGT 57.930 43.478 0.00 0.00 0.00 4.18
3165 3655 3.460857 AAGGAGAACGAGATATGTGGC 57.539 47.619 0.00 0.00 0.00 5.01
3217 3707 7.203255 ACAATCTTGTCTTAACTTAGTTGGC 57.797 36.000 8.00 0.00 36.50 4.52
3459 3951 2.100916 ACGTGTATCTACAGGCATGGAC 59.899 50.000 2.31 0.00 43.67 4.02
3510 4002 4.550076 TTATCATGGTTTTGGGGCTTTG 57.450 40.909 0.00 0.00 0.00 2.77
3526 4039 3.802139 GGCTTTGGAAAAAGAAGAAACCG 59.198 43.478 2.46 0.00 31.58 4.44
3596 4116 1.534595 CTGAGCACTTTCTTCCTGCAC 59.465 52.381 0.00 0.00 33.06 4.57
3602 4122 1.884579 ACTTTCTTCCTGCACTGCATG 59.115 47.619 3.64 1.66 38.13 4.06
3730 4250 5.569413 GGTCATTATTGCACTCGGTTTAAG 58.431 41.667 0.00 0.00 0.00 1.85
3764 4284 2.639839 ACTCATGGGCTTGTCAGTAGTT 59.360 45.455 0.00 0.00 0.00 2.24
3792 4312 8.180267 CAGCTAATTAGTCAAAAGTCTTGATGG 58.820 37.037 13.91 0.00 0.00 3.51
3794 4314 9.162764 GCTAATTAGTCAAAAGTCTTGATGGTA 57.837 33.333 13.91 0.00 0.00 3.25
3856 4376 6.238320 GGCATTCTTCTGCATACTTTGTCTAG 60.238 42.308 0.00 0.00 44.12 2.43
3857 4377 6.713520 CATTCTTCTGCATACTTTGTCTAGC 58.286 40.000 0.00 0.00 0.00 3.42
3858 4378 5.405935 TCTTCTGCATACTTTGTCTAGCA 57.594 39.130 0.00 0.00 0.00 3.49
3860 4380 4.808414 TCTGCATACTTTGTCTAGCACT 57.192 40.909 0.00 0.00 0.00 4.40
3861 4381 4.748892 TCTGCATACTTTGTCTAGCACTC 58.251 43.478 0.00 0.00 0.00 3.51
3863 4383 5.652452 TCTGCATACTTTGTCTAGCACTCTA 59.348 40.000 0.00 0.00 0.00 2.43
3864 4384 5.895928 TGCATACTTTGTCTAGCACTCTAG 58.104 41.667 0.00 0.00 42.87 2.43
3865 4385 4.742659 GCATACTTTGTCTAGCACTCTAGC 59.257 45.833 0.00 0.00 41.59 3.42
3871 4391 5.759506 TTGTCTAGCACTCTAGCTATGTC 57.240 43.478 0.00 0.00 45.32 3.06
3880 4400 3.884091 ACTCTAGCTATGTCCTTGTACCG 59.116 47.826 0.00 0.00 0.00 4.02
3891 4411 6.283544 TGTCCTTGTACCGTATGTTTCATA 57.716 37.500 0.00 0.00 0.00 2.15
3897 4417 6.895607 TGTACCGTATGTTTCATATGTGTG 57.104 37.500 1.90 0.00 0.00 3.82
3901 4421 7.908827 ACCGTATGTTTCATATGTGTGTTTA 57.091 32.000 1.90 0.00 0.00 2.01
3934 4454 7.815398 TGAAATGTTTCATGCATGTGTTATC 57.185 32.000 25.43 15.73 41.88 1.75
3937 4457 8.470040 AAATGTTTCATGCATGTGTTATCTTC 57.530 30.769 25.43 8.27 0.00 2.87
3941 4461 8.143193 TGTTTCATGCATGTGTTATCTTCTTTT 58.857 29.630 25.43 0.00 0.00 2.27
4026 4554 5.936686 TCTCAAGCAACTGAGATTTTGAG 57.063 39.130 8.60 11.50 45.45 3.02
4144 4675 0.530744 TGACCAACTTCGAGATCGGG 59.469 55.000 1.91 0.00 40.29 5.14
4480 5017 2.357034 AACGGCGTCGACTTGCAT 60.357 55.556 20.03 0.00 40.11 3.96
4540 5083 3.514417 CAGCAGCAGCAGCATGAT 58.486 55.556 12.92 0.00 45.49 2.45
4700 5243 4.547367 GATTCGGGGCGGTGGAGG 62.547 72.222 0.00 0.00 0.00 4.30
4897 5445 1.139095 GCAGGGTAGAAGACGACCG 59.861 63.158 0.00 0.00 41.61 4.79
4933 5486 1.153066 TGGGTCTCAACGCAAGCAA 60.153 52.632 0.00 0.00 44.46 3.91
4951 5504 2.048503 GCAAGCAAGCAAGCTGGG 60.049 61.111 3.54 1.51 45.89 4.45
5128 5686 4.496336 GCCAGCCAGCCCTGTAGG 62.496 72.222 0.00 0.00 39.47 3.18
5175 5734 0.240945 TAGCTTTGCTCTTTTGCGCC 59.759 50.000 4.18 0.00 40.44 6.53
5177 5736 0.598419 GCTTTGCTCTTTTGCGCCTT 60.598 50.000 4.18 0.00 35.36 4.35
5178 5737 1.856802 CTTTGCTCTTTTGCGCCTTT 58.143 45.000 4.18 0.00 35.36 3.11
5179 5738 2.204237 CTTTGCTCTTTTGCGCCTTTT 58.796 42.857 4.18 0.00 35.36 2.27
5180 5739 2.307934 TTGCTCTTTTGCGCCTTTTT 57.692 40.000 4.18 0.00 35.36 1.94
5211 5770 4.124970 GTCGATCGCTTTAAATTAGGGGT 58.875 43.478 11.09 0.00 0.00 4.95
5270 5830 2.393646 GCTCCAGGGTTAGTCAGAGAT 58.606 52.381 0.00 0.00 0.00 2.75
5273 5833 4.222336 CTCCAGGGTTAGTCAGAGATGAT 58.778 47.826 0.00 0.00 0.00 2.45
5274 5834 5.389520 CTCCAGGGTTAGTCAGAGATGATA 58.610 45.833 0.00 0.00 0.00 2.15
5305 5865 6.635030 ATTCCAAGGTTCTTGTTTACAGTC 57.365 37.500 6.86 0.00 0.00 3.51
5310 5870 5.353394 AGGTTCTTGTTTACAGTCACTCA 57.647 39.130 0.00 0.00 0.00 3.41
5311 5871 5.741011 AGGTTCTTGTTTACAGTCACTCAA 58.259 37.500 0.00 0.00 0.00 3.02
5312 5872 6.357367 AGGTTCTTGTTTACAGTCACTCAAT 58.643 36.000 0.00 0.00 0.00 2.57
5313 5873 6.260936 AGGTTCTTGTTTACAGTCACTCAATG 59.739 38.462 0.00 0.00 0.00 2.82
5314 5874 6.430451 GTTCTTGTTTACAGTCACTCAATGG 58.570 40.000 0.00 0.00 0.00 3.16
5315 5875 5.924356 TCTTGTTTACAGTCACTCAATGGA 58.076 37.500 0.00 0.00 0.00 3.41
5316 5876 5.991606 TCTTGTTTACAGTCACTCAATGGAG 59.008 40.000 0.00 0.00 46.96 3.86
5333 5893 5.723672 ATGGAGTAGTACCATTGTATCCG 57.276 43.478 0.00 0.00 44.51 4.18
5334 5894 4.539726 TGGAGTAGTACCATTGTATCCGT 58.460 43.478 0.00 0.00 28.82 4.69
5335 5895 5.693961 TGGAGTAGTACCATTGTATCCGTA 58.306 41.667 0.00 0.00 28.82 4.02
5336 5896 6.128486 TGGAGTAGTACCATTGTATCCGTAA 58.872 40.000 0.00 0.00 28.82 3.18
5337 5897 6.039717 TGGAGTAGTACCATTGTATCCGTAAC 59.960 42.308 0.00 0.00 28.82 2.50
5338 5898 6.396829 AGTAGTACCATTGTATCCGTAACC 57.603 41.667 0.00 0.00 0.00 2.85
5339 5899 5.893255 AGTAGTACCATTGTATCCGTAACCA 59.107 40.000 0.00 0.00 0.00 3.67
5340 5900 5.881923 AGTACCATTGTATCCGTAACCAT 57.118 39.130 0.00 0.00 0.00 3.55
5341 5901 5.607477 AGTACCATTGTATCCGTAACCATG 58.393 41.667 0.00 0.00 0.00 3.66
5342 5902 3.815809 ACCATTGTATCCGTAACCATGG 58.184 45.455 11.19 11.19 42.84 3.66
5343 5903 3.201266 ACCATTGTATCCGTAACCATGGT 59.799 43.478 13.00 13.00 44.36 3.55
5344 5904 3.813166 CCATTGTATCCGTAACCATGGTC 59.187 47.826 20.07 5.57 36.09 4.02
5345 5905 2.875087 TGTATCCGTAACCATGGTCG 57.125 50.000 20.07 18.20 32.08 4.79
5346 5906 2.101783 TGTATCCGTAACCATGGTCGT 58.898 47.619 20.07 6.00 32.08 4.34
5347 5907 2.159212 TGTATCCGTAACCATGGTCGTG 60.159 50.000 20.07 12.14 32.08 4.35
5348 5908 0.461339 ATCCGTAACCATGGTCGTGC 60.461 55.000 20.07 6.19 32.08 5.34
5349 5909 1.374885 CCGTAACCATGGTCGTGCA 60.375 57.895 20.07 0.00 0.00 4.57
5350 5910 1.632046 CCGTAACCATGGTCGTGCAC 61.632 60.000 20.07 6.82 0.00 4.57
5351 5911 0.669318 CGTAACCATGGTCGTGCACT 60.669 55.000 20.07 2.57 0.00 4.40
5352 5912 1.076332 GTAACCATGGTCGTGCACTC 58.924 55.000 20.07 7.79 0.00 3.51
5353 5913 0.682292 TAACCATGGTCGTGCACTCA 59.318 50.000 20.07 10.80 0.00 3.41
5354 5914 0.179032 AACCATGGTCGTGCACTCAA 60.179 50.000 20.07 1.66 0.00 3.02
5355 5915 0.884704 ACCATGGTCGTGCACTCAAC 60.885 55.000 13.00 10.07 0.00 3.18
5356 5916 0.884259 CCATGGTCGTGCACTCAACA 60.884 55.000 16.19 10.60 0.00 3.33
5357 5917 0.235665 CATGGTCGTGCACTCAACAC 59.764 55.000 16.19 3.44 34.62 3.32
5358 5918 0.179059 ATGGTCGTGCACTCAACACA 60.179 50.000 16.19 10.39 37.93 3.72
5359 5919 1.087202 TGGTCGTGCACTCAACACAC 61.087 55.000 16.19 0.00 37.93 3.82
5360 5920 1.087202 GGTCGTGCACTCAACACACA 61.087 55.000 16.19 0.00 37.93 3.72
5361 5921 0.301687 GTCGTGCACTCAACACACAG 59.698 55.000 16.19 0.00 37.93 3.66
5362 5922 0.174617 TCGTGCACTCAACACACAGA 59.825 50.000 16.19 0.00 37.93 3.41
5363 5923 0.301687 CGTGCACTCAACACACAGAC 59.698 55.000 16.19 0.00 37.93 3.51
5364 5924 0.301687 GTGCACTCAACACACAGACG 59.698 55.000 10.32 0.00 37.96 4.18
5365 5925 1.276844 GCACTCAACACACAGACGC 59.723 57.895 0.00 0.00 0.00 5.19
5366 5926 1.428370 GCACTCAACACACAGACGCA 61.428 55.000 0.00 0.00 0.00 5.24
5367 5927 1.220529 CACTCAACACACAGACGCAT 58.779 50.000 0.00 0.00 0.00 4.73
5368 5928 1.599071 CACTCAACACACAGACGCATT 59.401 47.619 0.00 0.00 0.00 3.56
5369 5929 2.032054 CACTCAACACACAGACGCATTT 59.968 45.455 0.00 0.00 0.00 2.32
5370 5930 2.682856 ACTCAACACACAGACGCATTTT 59.317 40.909 0.00 0.00 0.00 1.82
5371 5931 3.242739 ACTCAACACACAGACGCATTTTC 60.243 43.478 0.00 0.00 0.00 2.29
5372 5932 2.036217 CAACACACAGACGCATTTTCG 58.964 47.619 0.00 0.00 0.00 3.46
5373 5933 1.295792 ACACACAGACGCATTTTCGT 58.704 45.000 0.00 0.00 46.38 3.85
5381 5941 1.156736 ACGCATTTTCGTCCTTGAGG 58.843 50.000 0.00 0.00 38.44 3.86
5382 5942 0.179189 CGCATTTTCGTCCTTGAGGC 60.179 55.000 0.00 0.00 34.44 4.70
5383 5943 1.168714 GCATTTTCGTCCTTGAGGCT 58.831 50.000 0.00 0.00 34.44 4.58
5384 5944 1.135575 GCATTTTCGTCCTTGAGGCTG 60.136 52.381 0.00 0.00 34.44 4.85
5385 5945 1.470098 CATTTTCGTCCTTGAGGCTGG 59.530 52.381 0.00 0.00 34.44 4.85
5386 5946 0.889186 TTTTCGTCCTTGAGGCTGGC 60.889 55.000 0.00 0.00 34.44 4.85
5387 5947 2.748058 TTTCGTCCTTGAGGCTGGCC 62.748 60.000 3.00 3.00 34.44 5.36
5398 5958 3.605664 GCTGGCCTGCCGTGTTTT 61.606 61.111 23.24 0.00 39.42 2.43
5399 5959 3.128375 CTGGCCTGCCGTGTTTTT 58.872 55.556 3.32 0.00 39.42 1.94
5424 5984 9.645059 TTTCAAACAAGATACAAACATCAAACA 57.355 25.926 0.00 0.00 0.00 2.83
5425 5985 9.814899 TTCAAACAAGATACAAACATCAAACAT 57.185 25.926 0.00 0.00 0.00 2.71
5426 5986 9.462174 TCAAACAAGATACAAACATCAAACATC 57.538 29.630 0.00 0.00 0.00 3.06
5427 5987 9.467258 CAAACAAGATACAAACATCAAACATCT 57.533 29.630 0.00 0.00 0.00 2.90
5573 6133 9.076781 ACAAGCCAAATAAAATTTAAATTGCCT 57.923 25.926 14.04 5.19 0.00 4.75
5574 6134 9.558648 CAAGCCAAATAAAATTTAAATTGCCTC 57.441 29.630 14.04 0.22 0.00 4.70
5575 6135 8.860780 AGCCAAATAAAATTTAAATTGCCTCA 57.139 26.923 14.04 0.00 0.00 3.86
5576 6136 9.294614 AGCCAAATAAAATTTAAATTGCCTCAA 57.705 25.926 14.04 0.00 0.00 3.02
5577 6137 9.905171 GCCAAATAAAATTTAAATTGCCTCAAA 57.095 25.926 14.04 0.00 0.00 2.69
5609 6169 9.845740 TTAAAAAGATACATCTATTAGCTGCCA 57.154 29.630 0.00 0.00 35.76 4.92
5610 6170 8.752005 AAAAAGATACATCTATTAGCTGCCAA 57.248 30.769 0.00 0.00 35.76 4.52
5611 6171 7.736447 AAAGATACATCTATTAGCTGCCAAC 57.264 36.000 0.00 0.00 35.76 3.77
5612 6172 5.473931 AGATACATCTATTAGCTGCCAACG 58.526 41.667 0.00 0.00 34.85 4.10
5613 6173 3.543680 ACATCTATTAGCTGCCAACGT 57.456 42.857 0.00 0.00 0.00 3.99
5614 6174 3.198068 ACATCTATTAGCTGCCAACGTG 58.802 45.455 0.00 0.00 0.00 4.49
5615 6175 3.118775 ACATCTATTAGCTGCCAACGTGA 60.119 43.478 0.00 0.00 0.00 4.35
5616 6176 3.603158 TCTATTAGCTGCCAACGTGAA 57.397 42.857 0.00 0.00 0.00 3.18
5617 6177 4.137116 TCTATTAGCTGCCAACGTGAAT 57.863 40.909 0.00 0.00 0.00 2.57
5618 6178 4.119862 TCTATTAGCTGCCAACGTGAATC 58.880 43.478 0.00 0.00 0.00 2.52
5619 6179 1.448985 TTAGCTGCCAACGTGAATCC 58.551 50.000 0.00 0.00 0.00 3.01
5620 6180 0.323302 TAGCTGCCAACGTGAATCCA 59.677 50.000 0.00 0.00 0.00 3.41
5621 6181 1.210155 GCTGCCAACGTGAATCCAC 59.790 57.895 0.00 0.00 39.86 4.02
5622 6182 1.514678 GCTGCCAACGTGAATCCACA 61.515 55.000 0.00 0.00 43.34 4.17
5623 6183 1.167851 CTGCCAACGTGAATCCACAT 58.832 50.000 0.00 0.00 43.34 3.21
5624 6184 2.355197 CTGCCAACGTGAATCCACATA 58.645 47.619 0.00 0.00 43.34 2.29
5625 6185 2.945008 CTGCCAACGTGAATCCACATAT 59.055 45.455 0.00 0.00 43.34 1.78
5626 6186 2.682352 TGCCAACGTGAATCCACATATG 59.318 45.455 0.00 0.00 43.34 1.78
5627 6187 2.682856 GCCAACGTGAATCCACATATGT 59.317 45.455 1.41 1.41 43.34 2.29
5628 6188 3.128589 GCCAACGTGAATCCACATATGTT 59.871 43.478 5.37 0.00 43.34 2.71
5629 6189 4.730613 GCCAACGTGAATCCACATATGTTC 60.731 45.833 5.37 1.78 43.34 3.18
5630 6190 4.394610 CCAACGTGAATCCACATATGTTCA 59.605 41.667 5.37 4.69 43.34 3.18
5631 6191 5.106357 CCAACGTGAATCCACATATGTTCAA 60.106 40.000 5.37 0.00 43.34 2.69
5632 6192 5.545658 ACGTGAATCCACATATGTTCAAC 57.454 39.130 5.37 2.53 43.34 3.18
5633 6193 4.394920 ACGTGAATCCACATATGTTCAACC 59.605 41.667 5.37 0.00 43.34 3.77
5634 6194 4.394610 CGTGAATCCACATATGTTCAACCA 59.605 41.667 5.37 0.00 43.34 3.67
5635 6195 5.106357 CGTGAATCCACATATGTTCAACCAA 60.106 40.000 5.37 0.00 43.34 3.67
5636 6196 6.569418 CGTGAATCCACATATGTTCAACCAAA 60.569 38.462 5.37 0.00 43.34 3.28
5637 6197 7.322664 GTGAATCCACATATGTTCAACCAAAT 58.677 34.615 5.37 0.00 42.72 2.32
5638 6198 7.818930 GTGAATCCACATATGTTCAACCAAATT 59.181 33.333 5.37 0.00 42.72 1.82
5639 6199 9.029368 TGAATCCACATATGTTCAACCAAATTA 57.971 29.630 5.37 0.00 0.00 1.40
5645 6205 9.757859 CACATATGTTCAACCAAATTATTTTGC 57.242 29.630 5.37 0.00 40.77 3.68
5646 6206 9.499479 ACATATGTTCAACCAAATTATTTTGCA 57.501 25.926 1.41 0.00 40.77 4.08
5647 6207 9.976255 CATATGTTCAACCAAATTATTTTGCAG 57.024 29.630 4.84 0.00 40.77 4.41
5648 6208 6.297694 TGTTCAACCAAATTATTTTGCAGC 57.702 33.333 4.84 0.00 40.77 5.25
5649 6209 6.054295 TGTTCAACCAAATTATTTTGCAGCT 58.946 32.000 4.84 0.00 40.77 4.24
5650 6210 6.018098 TGTTCAACCAAATTATTTTGCAGCTG 60.018 34.615 10.11 10.11 40.77 4.24
5651 6211 5.851720 TCAACCAAATTATTTTGCAGCTGA 58.148 33.333 20.43 0.00 40.77 4.26
5652 6212 6.286758 TCAACCAAATTATTTTGCAGCTGAA 58.713 32.000 20.43 2.96 40.77 3.02
5653 6213 6.935771 TCAACCAAATTATTTTGCAGCTGAAT 59.064 30.769 20.43 11.14 40.77 2.57
5654 6214 6.730960 ACCAAATTATTTTGCAGCTGAATG 57.269 33.333 20.43 0.00 40.77 2.67
5655 6215 6.232692 ACCAAATTATTTTGCAGCTGAATGT 58.767 32.000 20.43 0.00 40.77 2.71
5656 6216 6.148150 ACCAAATTATTTTGCAGCTGAATGTG 59.852 34.615 20.43 11.89 40.77 3.21
5657 6217 6.369340 CCAAATTATTTTGCAGCTGAATGTGA 59.631 34.615 20.43 0.00 40.77 3.58
5658 6218 7.412563 CCAAATTATTTTGCAGCTGAATGTGAG 60.413 37.037 20.43 3.41 40.77 3.51
5659 6219 5.710513 TTATTTTGCAGCTGAATGTGAGT 57.289 34.783 20.43 0.00 0.00 3.41
5660 6220 4.595762 ATTTTGCAGCTGAATGTGAGTT 57.404 36.364 20.43 0.00 0.00 3.01
5661 6221 4.389890 TTTTGCAGCTGAATGTGAGTTT 57.610 36.364 20.43 0.00 0.00 2.66
5662 6222 3.631145 TTGCAGCTGAATGTGAGTTTC 57.369 42.857 20.43 0.00 0.00 2.78
5663 6223 1.532437 TGCAGCTGAATGTGAGTTTCG 59.468 47.619 20.43 0.00 0.00 3.46
5664 6224 1.727213 GCAGCTGAATGTGAGTTTCGC 60.727 52.381 20.43 0.00 0.00 4.70
5665 6225 1.532437 CAGCTGAATGTGAGTTTCGCA 59.468 47.619 8.42 0.00 41.54 5.10
5666 6226 2.031769 CAGCTGAATGTGAGTTTCGCAA 60.032 45.455 8.42 0.00 40.59 4.85
5667 6227 2.816087 AGCTGAATGTGAGTTTCGCAAT 59.184 40.909 0.00 0.00 40.59 3.56
5668 6228 3.120060 AGCTGAATGTGAGTTTCGCAATC 60.120 43.478 0.00 0.00 40.59 2.67
5669 6229 3.365264 GCTGAATGTGAGTTTCGCAATCA 60.365 43.478 9.30 9.30 42.47 2.57
5670 6230 4.145876 TGAATGTGAGTTTCGCAATCAC 57.854 40.909 6.34 7.76 40.60 3.06
5671 6231 2.880822 ATGTGAGTTTCGCAATCACG 57.119 45.000 9.50 0.00 45.00 4.35
5672 6232 0.234625 TGTGAGTTTCGCAATCACGC 59.765 50.000 9.50 0.00 45.00 5.34
5673 6233 0.234625 GTGAGTTTCGCAATCACGCA 59.765 50.000 0.24 0.00 34.55 5.24
5674 6234 1.135972 GTGAGTTTCGCAATCACGCAT 60.136 47.619 0.24 0.00 34.55 4.73
5675 6235 1.535028 TGAGTTTCGCAATCACGCATT 59.465 42.857 0.00 0.00 0.00 3.56
5676 6236 2.031245 TGAGTTTCGCAATCACGCATTT 60.031 40.909 0.00 0.00 0.00 2.32
5677 6237 2.318578 AGTTTCGCAATCACGCATTTG 58.681 42.857 0.00 0.00 0.00 2.32
5678 6238 2.031245 AGTTTCGCAATCACGCATTTGA 60.031 40.909 0.00 0.00 0.00 2.69
5679 6239 2.916716 GTTTCGCAATCACGCATTTGAT 59.083 40.909 0.00 0.00 37.87 2.57
5680 6240 2.177001 TCGCAATCACGCATTTGATG 57.823 45.000 0.00 0.00 36.31 3.07
5681 6241 1.468127 TCGCAATCACGCATTTGATGT 59.532 42.857 0.00 0.00 36.31 3.06
5682 6242 2.095314 TCGCAATCACGCATTTGATGTT 60.095 40.909 0.00 0.00 36.31 2.71
5683 6243 2.662637 CGCAATCACGCATTTGATGTTT 59.337 40.909 0.00 0.00 36.31 2.83
5684 6244 3.850837 CGCAATCACGCATTTGATGTTTA 59.149 39.130 0.00 0.00 36.31 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.141574 GCCAGTATACAAGGTCCCATTGTA 60.142 45.833 13.83 6.26 44.72 2.41
1 2 3.371595 GCCAGTATACAAGGTCCCATTGT 60.372 47.826 13.83 2.37 43.15 2.71
2 3 3.214328 GCCAGTATACAAGGTCCCATTG 58.786 50.000 13.83 0.00 0.00 2.82
3 4 2.174854 GGCCAGTATACAAGGTCCCATT 59.825 50.000 13.83 0.00 0.00 3.16
4 5 1.774856 GGCCAGTATACAAGGTCCCAT 59.225 52.381 13.83 0.00 0.00 4.00
5 6 1.209621 GGCCAGTATACAAGGTCCCA 58.790 55.000 13.83 0.00 0.00 4.37
6 7 0.472898 GGGCCAGTATACAAGGTCCC 59.527 60.000 21.38 20.84 41.41 4.46
225 228 2.109425 ACGTGTCTGGGAATAAAGGC 57.891 50.000 0.00 0.00 0.00 4.35
334 346 1.162698 GATAGCGTCCATGCATGCAT 58.837 50.000 27.46 27.46 37.31 3.96
348 360 4.380628 GCGGCGCATGCAGATAGC 62.381 66.667 29.21 12.25 45.35 2.97
349 361 2.968697 TGCGGCGCATGCAGATAG 60.969 61.111 33.07 1.33 45.35 2.08
369 399 2.078914 CGTGTGTACGCTCGTGGAC 61.079 63.158 19.68 2.94 44.11 4.02
387 417 1.805945 GCATGTCCTCGGTCGTGTC 60.806 63.158 0.00 0.00 0.00 3.67
414 444 0.251474 TGCAGGCAGAAAAGCTCCAT 60.251 50.000 0.00 0.00 34.17 3.41
415 445 0.892358 CTGCAGGCAGAAAAGCTCCA 60.892 55.000 16.02 0.00 46.30 3.86
416 446 1.881602 CTGCAGGCAGAAAAGCTCC 59.118 57.895 16.02 0.00 46.30 4.70
417 447 1.212229 GCTGCAGGCAGAAAAGCTC 59.788 57.895 24.46 1.43 46.30 4.09
419 449 2.126580 CGCTGCAGGCAGAAAAGC 60.127 61.111 24.46 8.78 46.30 3.51
420 450 1.208614 GTCGCTGCAGGCAGAAAAG 59.791 57.895 24.46 11.73 46.30 2.27
421 451 2.606961 CGTCGCTGCAGGCAGAAAA 61.607 57.895 24.46 6.07 46.30 2.29
422 452 3.043713 CGTCGCTGCAGGCAGAAA 61.044 61.111 24.46 8.54 46.30 2.52
435 465 4.103103 TGCTCCAGAGACGCGTCG 62.103 66.667 31.56 18.52 34.09 5.12
436 466 2.505118 GTGCTCCAGAGACGCGTC 60.505 66.667 31.30 31.30 0.00 5.19
440 470 2.126307 CACCGTGCTCCAGAGACG 60.126 66.667 0.00 5.87 34.30 4.18
441 471 2.433318 GCACCGTGCTCCAGAGAC 60.433 66.667 16.51 0.00 40.96 3.36
442 472 4.056125 CGCACCGTGCTCCAGAGA 62.056 66.667 20.87 0.00 42.25 3.10
443 473 3.865929 AACGCACCGTGCTCCAGAG 62.866 63.158 20.87 7.07 42.25 3.35
445 475 2.972505 AAACGCACCGTGCTCCAG 60.973 61.111 20.87 8.14 42.25 3.86
448 478 2.248431 GACAAACGCACCGTGCTC 59.752 61.111 20.87 7.85 42.25 4.26
456 520 0.745128 AACGGAAGGTGACAAACGCA 60.745 50.000 0.00 0.00 0.00 5.24
500 564 2.362369 CCTGATCGTGTCCAGGGCT 61.362 63.158 0.00 0.00 44.68 5.19
501 565 2.187946 CCTGATCGTGTCCAGGGC 59.812 66.667 0.00 0.00 44.68 5.19
504 568 4.794164 CGACCTGATCGTGTCCAG 57.206 61.111 8.39 0.00 46.25 3.86
535 599 4.515028 TCTACCGGTCCTCTTCATTCTA 57.485 45.455 12.40 0.00 0.00 2.10
540 680 2.307980 TCTCTTCTACCGGTCCTCTTCA 59.692 50.000 12.40 0.00 0.00 3.02
541 681 3.002038 TCTCTTCTACCGGTCCTCTTC 57.998 52.381 12.40 0.00 0.00 2.87
558 698 1.936547 CTATGGCTTGGCTCGTTTCTC 59.063 52.381 0.00 0.00 0.00 2.87
564 704 0.879400 CTCTGCTATGGCTTGGCTCG 60.879 60.000 9.98 2.09 39.59 5.03
576 716 2.125391 CTTGCTGCCGCTCTGCTA 60.125 61.111 0.70 0.00 39.95 3.49
580 720 4.774503 GCCTCTTGCTGCCGCTCT 62.775 66.667 0.70 0.00 36.87 4.09
808 1041 2.227089 CTGGACACGGTAGGAGTGCC 62.227 65.000 0.00 0.52 42.94 5.01
905 1138 3.157949 CGGGGAGAGGGAAGGAGC 61.158 72.222 0.00 0.00 0.00 4.70
911 1144 4.144727 GAGAGGCGGGGAGAGGGA 62.145 72.222 0.00 0.00 0.00 4.20
922 1155 2.520741 CTCGAGGGAGGGAGAGGC 60.521 72.222 3.91 0.00 36.61 4.70
923 1156 0.467290 CTTCTCGAGGGAGGGAGAGG 60.467 65.000 13.56 0.00 40.17 3.69
924 1157 1.106944 GCTTCTCGAGGGAGGGAGAG 61.107 65.000 13.56 0.00 40.17 3.20
925 1158 1.076632 GCTTCTCGAGGGAGGGAGA 60.077 63.158 13.56 0.00 40.85 3.71
926 1159 2.485795 CGCTTCTCGAGGGAGGGAG 61.486 68.421 21.05 9.15 40.85 4.30
927 1160 2.440430 CGCTTCTCGAGGGAGGGA 60.440 66.667 21.05 0.00 40.85 4.20
928 1161 2.440430 TCGCTTCTCGAGGGAGGG 60.440 66.667 13.56 17.80 43.16 4.30
951 1184 2.050533 GATGCGAGCGAGCGAGAT 60.051 61.111 1.41 0.00 40.67 2.75
1074 1320 3.802948 AATAGTGGCGGAGTAGTTGAG 57.197 47.619 0.00 0.00 0.00 3.02
1075 1321 3.067742 GCTAATAGTGGCGGAGTAGTTGA 59.932 47.826 0.00 0.00 0.00 3.18
1077 1323 2.364647 GGCTAATAGTGGCGGAGTAGTT 59.635 50.000 0.00 0.00 30.42 2.24
1081 1327 1.041437 GAGGCTAATAGTGGCGGAGT 58.959 55.000 0.00 0.00 35.01 3.85
1085 1331 1.729472 CGATCGAGGCTAATAGTGGCG 60.729 57.143 10.26 0.00 35.01 5.69
1086 1332 1.540267 TCGATCGAGGCTAATAGTGGC 59.460 52.381 15.15 0.00 0.00 5.01
1087 1333 3.692101 AGATCGATCGAGGCTAATAGTGG 59.308 47.826 23.84 0.00 0.00 4.00
1089 1335 3.942748 GGAGATCGATCGAGGCTAATAGT 59.057 47.826 23.84 2.57 0.00 2.12
1090 1336 4.196193 AGGAGATCGATCGAGGCTAATAG 58.804 47.826 23.84 0.00 0.00 1.73
1091 1337 4.223556 AGGAGATCGATCGAGGCTAATA 57.776 45.455 23.84 0.00 0.00 0.98
1092 1338 3.080300 AGGAGATCGATCGAGGCTAAT 57.920 47.619 23.84 5.03 0.00 1.73
1093 1339 2.570415 AGGAGATCGATCGAGGCTAA 57.430 50.000 23.84 0.00 0.00 3.09
1094 1340 2.428491 GAAGGAGATCGATCGAGGCTA 58.572 52.381 23.84 0.00 0.00 3.93
1095 1341 1.243902 GAAGGAGATCGATCGAGGCT 58.756 55.000 23.84 21.39 0.00 4.58
1096 1342 0.242555 GGAAGGAGATCGATCGAGGC 59.757 60.000 23.84 17.11 0.00 4.70
1097 1343 1.810151 GAGGAAGGAGATCGATCGAGG 59.190 57.143 23.84 0.00 0.00 4.63
1111 1357 3.855858 GGTAACTGAGCAAGAGAGGAAG 58.144 50.000 0.00 0.00 0.00 3.46
1136 1382 2.028484 GCAGACCGACGACCACAA 59.972 61.111 0.00 0.00 0.00 3.33
1148 1394 2.480416 GGATGGATCGATATCGGCAGAC 60.480 54.545 24.12 11.24 40.29 3.51
1149 1395 1.751351 GGATGGATCGATATCGGCAGA 59.249 52.381 24.12 5.98 40.29 4.26
1150 1396 1.534805 CGGATGGATCGATATCGGCAG 60.535 57.143 24.12 5.33 40.29 4.85
1151 1397 0.455815 CGGATGGATCGATATCGGCA 59.544 55.000 24.12 7.13 40.29 5.69
1152 1398 0.872021 GCGGATGGATCGATATCGGC 60.872 60.000 24.12 18.96 40.67 5.54
1153 1399 0.249073 GGCGGATGGATCGATATCGG 60.249 60.000 24.12 4.67 40.29 4.18
1154 1400 0.249073 GGGCGGATGGATCGATATCG 60.249 60.000 19.14 19.14 41.45 2.92
1155 1401 0.249073 CGGGCGGATGGATCGATATC 60.249 60.000 0.00 0.00 0.00 1.63
1156 1402 0.970937 ACGGGCGGATGGATCGATAT 60.971 55.000 0.00 0.00 0.00 1.63
1157 1403 1.183030 AACGGGCGGATGGATCGATA 61.183 55.000 0.00 0.00 0.00 2.92
1158 1404 2.507854 AACGGGCGGATGGATCGAT 61.508 57.895 0.00 0.00 0.00 3.59
1159 1405 3.151710 AACGGGCGGATGGATCGA 61.152 61.111 0.00 0.00 0.00 3.59
1160 1406 2.967076 CAACGGGCGGATGGATCG 60.967 66.667 0.00 0.00 0.00 3.69
1161 1407 2.180204 CACAACGGGCGGATGGATC 61.180 63.158 7.21 0.00 0.00 3.36
1162 1408 2.124736 CACAACGGGCGGATGGAT 60.125 61.111 7.21 0.00 0.00 3.41
1165 1411 3.803082 CAGCACAACGGGCGGATG 61.803 66.667 0.00 0.00 36.08 3.51
1166 1412 3.329542 ATCAGCACAACGGGCGGAT 62.330 57.895 0.00 0.00 40.54 4.18
1167 1413 4.015406 ATCAGCACAACGGGCGGA 62.015 61.111 0.00 0.00 39.67 5.54
1168 1414 3.803082 CATCAGCACAACGGGCGG 61.803 66.667 0.00 0.00 36.08 6.13
1169 1415 4.465512 GCATCAGCACAACGGGCG 62.466 66.667 0.00 0.00 41.58 6.13
1170 1416 4.465512 CGCATCAGCACAACGGGC 62.466 66.667 0.00 0.00 42.27 6.13
1171 1417 1.089481 ATACGCATCAGCACAACGGG 61.089 55.000 0.00 0.00 42.27 5.28
1176 1422 1.077915 CACACATACGCATCAGCACA 58.922 50.000 0.00 0.00 42.27 4.57
1186 1432 3.294908 GCACATGCACACACATACG 57.705 52.632 0.00 0.00 41.59 3.06
1199 1452 0.545171 CCTCCATCTCACCTGCACAT 59.455 55.000 0.00 0.00 0.00 3.21
1308 1561 3.213402 CCCGTTGTGGTTGCCGTT 61.213 61.111 0.00 0.00 35.15 4.44
1309 1562 4.178169 TCCCGTTGTGGTTGCCGT 62.178 61.111 0.00 0.00 35.15 5.68
1310 1563 3.353836 CTCCCGTTGTGGTTGCCG 61.354 66.667 0.00 0.00 35.15 5.69
1311 1564 2.969300 TTCCTCCCGTTGTGGTTGCC 62.969 60.000 0.00 0.00 35.15 4.52
1312 1565 0.893727 ATTCCTCCCGTTGTGGTTGC 60.894 55.000 0.00 0.00 35.15 4.17
1313 1566 2.483014 TATTCCTCCCGTTGTGGTTG 57.517 50.000 0.00 0.00 35.15 3.77
1314 1567 3.732048 ATTATTCCTCCCGTTGTGGTT 57.268 42.857 0.00 0.00 35.15 3.67
1315 1568 3.778629 ACTATTATTCCTCCCGTTGTGGT 59.221 43.478 0.00 0.00 35.15 4.16
1316 1569 4.127171 CACTATTATTCCTCCCGTTGTGG 58.873 47.826 0.00 0.00 37.55 4.17
1317 1570 4.809426 GTCACTATTATTCCTCCCGTTGTG 59.191 45.833 0.00 0.00 0.00 3.33
1318 1571 4.441079 CGTCACTATTATTCCTCCCGTTGT 60.441 45.833 0.00 0.00 0.00 3.32
1319 1572 4.049186 CGTCACTATTATTCCTCCCGTTG 58.951 47.826 0.00 0.00 0.00 4.10
1346 1611 3.307906 ACAACCTGGTCGCCGCTA 61.308 61.111 0.00 0.00 0.00 4.26
1347 1612 4.988598 CACAACCTGGTCGCCGCT 62.989 66.667 0.00 0.00 0.00 5.52
1394 1659 1.301677 CGGCCAAGAACTTGAGCTCC 61.302 60.000 12.15 9.47 42.93 4.70
1614 1879 6.538021 GCAAATACTAGCTAGATGGATGGATG 59.462 42.308 27.45 12.76 0.00 3.51
1622 1887 5.858381 TCTTGGGCAAATACTAGCTAGATG 58.142 41.667 27.45 18.61 0.00 2.90
1624 1889 5.950544 TTCTTGGGCAAATACTAGCTAGA 57.049 39.130 27.45 11.19 0.00 2.43
1626 1891 6.900194 AGATTTCTTGGGCAAATACTAGCTA 58.100 36.000 0.00 0.00 0.00 3.32
1627 1892 5.760131 AGATTTCTTGGGCAAATACTAGCT 58.240 37.500 0.00 0.00 0.00 3.32
1628 1893 7.751768 ATAGATTTCTTGGGCAAATACTAGC 57.248 36.000 0.00 0.00 0.00 3.42
1629 1894 9.778741 TGTATAGATTTCTTGGGCAAATACTAG 57.221 33.333 0.00 0.00 0.00 2.57
1631 1896 9.474313 TTTGTATAGATTTCTTGGGCAAATACT 57.526 29.630 0.00 0.00 0.00 2.12
1679 1944 2.223157 GCAGTACAGACTACAGAGCTCG 60.223 54.545 8.37 6.04 33.32 5.03
1757 2034 1.444836 TTTTCGATGCGGTTACTGGG 58.555 50.000 0.00 0.00 0.00 4.45
1805 2096 3.997021 AGAACAGCTTCTTACACCGAATG 59.003 43.478 0.00 0.00 32.29 2.67
1817 2108 2.945668 ACACCTTGTTCAGAACAGCTTC 59.054 45.455 15.61 0.00 43.27 3.86
1831 2122 4.142816 CGAGCATAGGAAAAGAACACCTTG 60.143 45.833 0.00 0.00 34.79 3.61
1864 2156 1.996786 AAAATCAGATGCGCAGGCCG 61.997 55.000 18.32 4.23 38.85 6.13
1887 2179 5.178061 GCCTAAAAATCACCCAAAATGGAG 58.822 41.667 0.00 0.00 40.96 3.86
2003 2296 5.175859 GCATGGTAAGCACAAGAGTAGTAA 58.824 41.667 0.00 0.00 0.00 2.24
2069 2366 2.143122 TCAAGAAGCACAAGTTAGCGG 58.857 47.619 0.00 0.00 35.48 5.52
2070 2367 3.187227 ACATCAAGAAGCACAAGTTAGCG 59.813 43.478 0.00 0.00 35.48 4.26
2071 2368 4.756084 ACATCAAGAAGCACAAGTTAGC 57.244 40.909 0.00 0.00 0.00 3.09
2107 2404 4.384647 GCCATGAAGGAGGAACTATCAAGT 60.385 45.833 0.00 0.00 41.55 3.16
2108 2405 4.133078 GCCATGAAGGAGGAACTATCAAG 58.867 47.826 0.00 0.00 41.55 3.02
2110 2407 3.135348 CAGCCATGAAGGAGGAACTATCA 59.865 47.826 0.00 0.00 41.55 2.15
2111 2408 3.135530 ACAGCCATGAAGGAGGAACTATC 59.864 47.826 0.00 0.00 41.55 2.08
2112 2409 3.118531 ACAGCCATGAAGGAGGAACTAT 58.881 45.455 0.00 0.00 41.55 2.12
2113 2410 2.551270 ACAGCCATGAAGGAGGAACTA 58.449 47.619 0.00 0.00 41.55 2.24
2469 2781 3.871594 CCTTTTCATAGTCGGCAACCTAG 59.128 47.826 0.00 0.00 0.00 3.02
2571 2883 7.106439 AGACTAGAAGTGGTCATGATTAGTG 57.894 40.000 0.00 0.00 36.64 2.74
2718 3199 3.950395 GCTCTTCCTGCACCAGATTAATT 59.050 43.478 0.00 0.00 32.44 1.40
2727 3208 1.673665 CCACTGCTCTTCCTGCACC 60.674 63.158 0.00 0.00 36.37 5.01
2740 3221 0.803768 CGCCACGAGAGAATCCACTG 60.804 60.000 0.00 0.00 33.66 3.66
2804 3285 7.221838 GCAAATATGGTTAACATACACGCAAAT 59.778 33.333 8.10 0.00 44.41 2.32
2814 3295 5.678616 GCAAGACGGCAAATATGGTTAACAT 60.679 40.000 8.10 2.18 43.68 2.71
2816 3297 4.102649 GCAAGACGGCAAATATGGTTAAC 58.897 43.478 0.00 0.00 0.00 2.01
2817 3298 3.759086 TGCAAGACGGCAAATATGGTTAA 59.241 39.130 0.00 0.00 41.65 2.01
2818 3299 3.348119 TGCAAGACGGCAAATATGGTTA 58.652 40.909 0.00 0.00 41.65 2.85
2819 3300 2.166829 TGCAAGACGGCAAATATGGTT 58.833 42.857 0.00 0.00 41.65 3.67
2820 3301 1.832883 TGCAAGACGGCAAATATGGT 58.167 45.000 0.00 0.00 41.65 3.55
2830 3311 0.884259 TGACACCACATGCAAGACGG 60.884 55.000 0.00 0.00 0.00 4.79
2832 3313 2.430465 AGATGACACCACATGCAAGAC 58.570 47.619 0.00 0.00 0.00 3.01
2857 3338 6.996509 AGATGGTAGAATGCAAAACAAACAT 58.003 32.000 0.00 0.00 0.00 2.71
2876 3358 3.400255 CATGCTGGTGATGTCTAGATGG 58.600 50.000 0.00 0.00 0.00 3.51
2988 3474 8.696374 TCATCCAACTAAGTACAGGAAATAGAG 58.304 37.037 0.00 0.00 31.17 2.43
2991 3477 9.042450 TCTTCATCCAACTAAGTACAGGAAATA 57.958 33.333 0.00 0.00 31.17 1.40
3008 3494 5.125356 ACGAACATGCATTATCTTCATCCA 58.875 37.500 0.00 0.00 0.00 3.41
3014 3500 7.766278 AGAAAGTAGACGAACATGCATTATCTT 59.234 33.333 0.00 0.00 0.00 2.40
3019 3505 4.327357 CGAGAAAGTAGACGAACATGCATT 59.673 41.667 0.00 0.00 0.00 3.56
3042 3532 2.064573 GTAACCAATGGTTGCAGTGC 57.935 50.000 26.55 8.58 46.35 4.40
3092 3582 7.155328 ACTAGCAAAGATATATCCTGGTTTCG 58.845 38.462 17.51 11.42 0.00 3.46
3217 3707 6.327626 TCCCCTCCTACTTGAGATTTCATTAG 59.672 42.308 0.00 0.00 34.11 1.73
3311 3801 1.447838 CCTACGTGCACGGCAAGAT 60.448 57.895 39.21 21.92 41.47 2.40
3411 3902 0.883833 GGGTGCATCTGGTCAAACTG 59.116 55.000 0.00 0.00 0.00 3.16
3459 3951 1.113788 ATGGGAATCAAATGTGGGCG 58.886 50.000 0.00 0.00 0.00 6.13
3502 3994 4.127171 GTTTCTTCTTTTTCCAAAGCCCC 58.873 43.478 0.00 0.00 39.56 5.80
3510 4002 2.545113 GGCCACGGTTTCTTCTTTTTCC 60.545 50.000 0.00 0.00 0.00 3.13
3540 4053 4.758674 GCATTACATACACATCAGAGGCAT 59.241 41.667 0.00 0.00 0.00 4.40
3544 4057 6.510536 TCTGAGCATTACATACACATCAGAG 58.489 40.000 0.00 0.00 37.58 3.35
3546 4059 6.147328 CCATCTGAGCATTACATACACATCAG 59.853 42.308 0.00 0.00 35.40 2.90
3547 4060 5.993441 CCATCTGAGCATTACATACACATCA 59.007 40.000 0.00 0.00 0.00 3.07
3548 4061 5.410746 CCCATCTGAGCATTACATACACATC 59.589 44.000 0.00 0.00 0.00 3.06
3550 4063 4.408596 TCCCATCTGAGCATTACATACACA 59.591 41.667 0.00 0.00 0.00 3.72
3551 4064 4.960938 TCCCATCTGAGCATTACATACAC 58.039 43.478 0.00 0.00 0.00 2.90
3602 4122 6.877322 TCCAAGTTCTAAATACAGGTTGCTAC 59.123 38.462 0.00 0.00 0.00 3.58
3667 4187 6.015350 CACTCCTAATATAATCACCGGTCAGT 60.015 42.308 2.59 0.00 0.00 3.41
3730 4250 2.357009 CCCATGAGTGCAATGAGCTTAC 59.643 50.000 0.00 0.00 45.94 2.34
3764 4284 6.710295 TCAAGACTTTTGACTAATTAGCTGCA 59.290 34.615 12.54 5.87 0.00 4.41
3792 4312 1.531149 AGACAGCAATGCACGTTGTAC 59.469 47.619 8.35 0.00 0.00 2.90
3794 4314 1.800586 CTAGACAGCAATGCACGTTGT 59.199 47.619 8.35 2.25 0.00 3.32
3797 4317 0.608130 TCCTAGACAGCAATGCACGT 59.392 50.000 8.35 3.67 0.00 4.49
3799 4319 1.012841 GCTCCTAGACAGCAATGCAC 58.987 55.000 8.35 0.00 36.82 4.57
3856 4376 3.810310 ACAAGGACATAGCTAGAGTGC 57.190 47.619 11.21 11.21 0.00 4.40
3857 4377 4.261238 CGGTACAAGGACATAGCTAGAGTG 60.261 50.000 6.37 0.00 0.00 3.51
3858 4378 3.884091 CGGTACAAGGACATAGCTAGAGT 59.116 47.826 0.00 0.00 0.00 3.24
3860 4380 3.894759 ACGGTACAAGGACATAGCTAGA 58.105 45.455 0.00 0.00 0.00 2.43
3861 4381 5.241064 ACATACGGTACAAGGACATAGCTAG 59.759 44.000 0.00 0.00 0.00 3.42
3863 4383 3.958798 ACATACGGTACAAGGACATAGCT 59.041 43.478 0.00 0.00 0.00 3.32
3864 4384 4.317671 ACATACGGTACAAGGACATAGC 57.682 45.455 0.00 0.00 0.00 2.97
3865 4385 6.334989 TGAAACATACGGTACAAGGACATAG 58.665 40.000 0.00 0.00 0.00 2.23
3866 4386 6.283544 TGAAACATACGGTACAAGGACATA 57.716 37.500 0.00 0.00 0.00 2.29
3871 4391 6.537301 ACACATATGAAACATACGGTACAAGG 59.463 38.462 10.38 0.00 0.00 3.61
3891 4411 9.598517 ACATTTCACTTGAAAATAAACACACAT 57.401 25.926 8.42 0.00 45.81 3.21
3941 4461 8.726068 CATACATACATTTGTCACTACCACAAA 58.274 33.333 0.75 0.75 45.43 2.83
3946 4466 8.487313 TCAACATACATACATTTGTCACTACC 57.513 34.615 0.00 0.00 0.00 3.18
4099 4630 1.452108 CAGGCCCCGGAACTTGATC 60.452 63.158 0.73 0.00 0.00 2.92
4126 4657 0.806492 GCCCGATCTCGAAGTTGGTC 60.806 60.000 0.22 0.00 43.02 4.02
4144 4675 2.092882 GCTCTCCACGTTGTACCGC 61.093 63.158 0.00 0.00 0.00 5.68
4438 4975 1.441729 GTAGCAGTGAGGCGCCATA 59.558 57.895 31.54 14.63 39.27 2.74
4480 5017 1.270252 TGCTGATCGTGTTGCTGAAGA 60.270 47.619 0.00 0.00 0.00 2.87
4534 5077 2.160205 CCCATGGACTGATGATCATGC 58.840 52.381 14.30 5.60 36.58 4.06
4535 5078 2.107726 ACCCCATGGACTGATGATCATG 59.892 50.000 14.30 1.80 37.37 3.07
4538 5081 2.808202 CGAACCCCATGGACTGATGATC 60.808 54.545 15.22 0.00 34.81 2.92
4540 5083 0.541392 CGAACCCCATGGACTGATGA 59.459 55.000 15.22 0.00 34.81 2.92
4598 5141 1.077089 GTCACCGAGCTTTCGTAGGC 61.077 60.000 0.00 0.00 0.00 3.93
4858 5406 2.954611 TGACCTGTCAGCGTCTCG 59.045 61.111 17.20 0.00 34.14 4.04
4897 5445 3.059166 CCCATTTTGTTGTTAGCACAGC 58.941 45.455 0.00 0.00 33.22 4.40
4933 5486 2.571216 CCCAGCTTGCTTGCTTGCT 61.571 57.895 1.40 6.98 41.98 3.91
4968 5521 8.138712 TCAGAAAACAGAGACTAAAAGAGACTC 58.861 37.037 0.00 0.00 44.48 3.36
4969 5522 8.012957 TCAGAAAACAGAGACTAAAAGAGACT 57.987 34.615 0.00 0.00 32.45 3.24
5128 5686 1.153489 TCGCTGCTCTGCTTCCATC 60.153 57.895 0.00 0.00 0.00 3.51
5180 5739 7.605410 ATTTAAAGCGATCGACCTAGAAAAA 57.395 32.000 21.57 7.69 0.00 1.94
5185 5744 5.634020 CCCTAATTTAAAGCGATCGACCTAG 59.366 44.000 21.57 6.82 0.00 3.02
5311 5871 5.145564 ACGGATACAATGGTACTACTCCAT 58.854 41.667 0.00 0.00 46.20 3.41
5312 5872 4.539726 ACGGATACAATGGTACTACTCCA 58.460 43.478 0.00 0.00 39.41 3.86
5313 5873 6.442112 GTTACGGATACAATGGTACTACTCC 58.558 44.000 0.00 0.00 30.94 3.85
5314 5874 6.039717 TGGTTACGGATACAATGGTACTACTC 59.960 42.308 0.00 0.00 30.94 2.59
5315 5875 5.893255 TGGTTACGGATACAATGGTACTACT 59.107 40.000 0.00 0.00 30.94 2.57
5316 5876 6.147864 TGGTTACGGATACAATGGTACTAC 57.852 41.667 0.00 0.00 30.94 2.73
5317 5877 6.239373 CCATGGTTACGGATACAATGGTACTA 60.239 42.308 2.57 0.00 40.69 1.82
5318 5878 5.454187 CCATGGTTACGGATACAATGGTACT 60.454 44.000 2.57 0.00 40.69 2.73
5319 5879 4.753107 CCATGGTTACGGATACAATGGTAC 59.247 45.833 2.57 0.00 40.69 3.34
5320 5880 4.963373 CCATGGTTACGGATACAATGGTA 58.037 43.478 2.57 0.00 40.69 3.25
5321 5881 3.815809 CCATGGTTACGGATACAATGGT 58.184 45.455 2.57 0.00 40.69 3.55
5323 5883 3.493129 CGACCATGGTTACGGATACAATG 59.507 47.826 20.85 0.00 0.00 2.82
5324 5884 3.133362 ACGACCATGGTTACGGATACAAT 59.867 43.478 24.80 4.50 0.00 2.71
5325 5885 2.496871 ACGACCATGGTTACGGATACAA 59.503 45.455 24.80 0.00 0.00 2.41
5326 5886 2.101783 ACGACCATGGTTACGGATACA 58.898 47.619 24.80 0.00 0.00 2.29
5327 5887 2.466846 CACGACCATGGTTACGGATAC 58.533 52.381 24.80 8.15 0.00 2.24
5328 5888 1.202440 GCACGACCATGGTTACGGATA 60.202 52.381 24.80 0.00 0.00 2.59
5329 5889 0.461339 GCACGACCATGGTTACGGAT 60.461 55.000 24.80 7.02 0.00 4.18
5330 5890 1.079681 GCACGACCATGGTTACGGA 60.080 57.895 24.80 0.00 0.00 4.69
5331 5891 1.374885 TGCACGACCATGGTTACGG 60.375 57.895 24.80 16.41 0.00 4.02
5332 5892 0.669318 AGTGCACGACCATGGTTACG 60.669 55.000 20.85 20.92 0.00 3.18
5333 5893 1.076332 GAGTGCACGACCATGGTTAC 58.924 55.000 20.85 12.98 0.00 2.50
5334 5894 0.682292 TGAGTGCACGACCATGGTTA 59.318 50.000 20.85 0.63 0.00 2.85
5335 5895 0.179032 TTGAGTGCACGACCATGGTT 60.179 50.000 20.85 0.00 0.00 3.67
5336 5896 0.884704 GTTGAGTGCACGACCATGGT 60.885 55.000 19.89 19.89 0.00 3.55
5337 5897 0.884259 TGTTGAGTGCACGACCATGG 60.884 55.000 11.19 11.19 0.00 3.66
5338 5898 0.235665 GTGTTGAGTGCACGACCATG 59.764 55.000 12.01 0.00 0.00 3.66
5339 5899 0.179059 TGTGTTGAGTGCACGACCAT 60.179 50.000 12.01 0.00 39.53 3.55
5340 5900 1.087202 GTGTGTTGAGTGCACGACCA 61.087 55.000 12.01 8.33 39.53 4.02
5341 5901 1.087202 TGTGTGTTGAGTGCACGACC 61.087 55.000 12.01 5.60 39.53 4.79
5342 5902 0.301687 CTGTGTGTTGAGTGCACGAC 59.698 55.000 12.01 12.17 39.53 4.34
5343 5903 0.174617 TCTGTGTGTTGAGTGCACGA 59.825 50.000 12.01 0.00 39.53 4.35
5344 5904 0.301687 GTCTGTGTGTTGAGTGCACG 59.698 55.000 12.01 0.00 39.53 5.34
5345 5905 0.301687 CGTCTGTGTGTTGAGTGCAC 59.698 55.000 9.40 9.40 37.37 4.57
5346 5906 1.428370 GCGTCTGTGTGTTGAGTGCA 61.428 55.000 0.00 0.00 0.00 4.57
5347 5907 1.276844 GCGTCTGTGTGTTGAGTGC 59.723 57.895 0.00 0.00 0.00 4.40
5348 5908 1.220529 ATGCGTCTGTGTGTTGAGTG 58.779 50.000 0.00 0.00 0.00 3.51
5349 5909 1.953559 AATGCGTCTGTGTGTTGAGT 58.046 45.000 0.00 0.00 0.00 3.41
5350 5910 3.291585 GAAAATGCGTCTGTGTGTTGAG 58.708 45.455 0.00 0.00 0.00 3.02
5351 5911 2.286125 CGAAAATGCGTCTGTGTGTTGA 60.286 45.455 0.00 0.00 0.00 3.18
5352 5912 2.036217 CGAAAATGCGTCTGTGTGTTG 58.964 47.619 0.00 0.00 0.00 3.33
5353 5913 1.668751 ACGAAAATGCGTCTGTGTGTT 59.331 42.857 0.00 0.00 41.22 3.32
5354 5914 1.295792 ACGAAAATGCGTCTGTGTGT 58.704 45.000 0.00 0.00 41.22 3.72
5363 5923 0.179189 GCCTCAAGGACGAAAATGCG 60.179 55.000 0.00 0.00 37.39 4.73
5364 5924 1.135575 CAGCCTCAAGGACGAAAATGC 60.136 52.381 0.00 0.00 37.39 3.56
5365 5925 1.470098 CCAGCCTCAAGGACGAAAATG 59.530 52.381 0.00 0.00 37.39 2.32
5366 5926 1.826385 CCAGCCTCAAGGACGAAAAT 58.174 50.000 0.00 0.00 37.39 1.82
5367 5927 0.889186 GCCAGCCTCAAGGACGAAAA 60.889 55.000 0.00 0.00 37.39 2.29
5368 5928 1.302511 GCCAGCCTCAAGGACGAAA 60.303 57.895 0.00 0.00 37.39 3.46
5369 5929 2.347490 GCCAGCCTCAAGGACGAA 59.653 61.111 0.00 0.00 37.39 3.85
5370 5930 3.706373 GGCCAGCCTCAAGGACGA 61.706 66.667 0.00 0.00 37.39 4.20
5371 5931 3.710722 AGGCCAGCCTCAAGGACG 61.711 66.667 5.04 0.00 44.43 4.79
5372 5932 2.045536 CAGGCCAGCCTCAAGGAC 60.046 66.667 8.61 0.00 46.28 3.85
5373 5933 4.039092 GCAGGCCAGCCTCAAGGA 62.039 66.667 9.39 0.00 46.28 3.36
5381 5941 3.150647 AAAAACACGGCAGGCCAGC 62.151 57.895 12.53 12.53 35.37 4.85
5382 5942 3.128375 AAAAACACGGCAGGCCAG 58.872 55.556 5.01 0.00 35.37 4.85
5398 5958 9.645059 TGTTTGATGTTTGTATCTTGTTTGAAA 57.355 25.926 0.00 0.00 0.00 2.69
5399 5959 9.814899 ATGTTTGATGTTTGTATCTTGTTTGAA 57.185 25.926 0.00 0.00 0.00 2.69
5400 5960 9.462174 GATGTTTGATGTTTGTATCTTGTTTGA 57.538 29.630 0.00 0.00 0.00 2.69
5401 5961 9.467258 AGATGTTTGATGTTTGTATCTTGTTTG 57.533 29.630 0.00 0.00 0.00 2.93
5547 6107 9.076781 AGGCAATTTAAATTTTATTTGGCTTGT 57.923 25.926 23.71 11.22 0.00 3.16
5548 6108 9.558648 GAGGCAATTTAAATTTTATTTGGCTTG 57.441 29.630 27.06 11.15 0.00 4.01
5549 6109 9.294614 TGAGGCAATTTAAATTTTATTTGGCTT 57.705 25.926 27.06 17.69 0.00 4.35
5550 6110 8.860780 TGAGGCAATTTAAATTTTATTTGGCT 57.139 26.923 26.87 26.87 0.00 4.75
5551 6111 9.905171 TTTGAGGCAATTTAAATTTTATTTGGC 57.095 25.926 21.18 21.18 0.00 4.52
5583 6143 9.845740 TGGCAGCTAATAGATGTATCTTTTTAA 57.154 29.630 7.40 0.00 38.32 1.52
5584 6144 9.845740 TTGGCAGCTAATAGATGTATCTTTTTA 57.154 29.630 7.40 0.00 38.32 1.52
5585 6145 8.624776 GTTGGCAGCTAATAGATGTATCTTTTT 58.375 33.333 7.40 0.00 38.32 1.94
5586 6146 7.041780 CGTTGGCAGCTAATAGATGTATCTTTT 60.042 37.037 7.40 1.71 38.32 2.27
5587 6147 6.425114 CGTTGGCAGCTAATAGATGTATCTTT 59.575 38.462 7.40 0.00 38.32 2.52
5588 6148 5.928839 CGTTGGCAGCTAATAGATGTATCTT 59.071 40.000 7.40 0.00 38.32 2.40
5589 6149 5.011125 ACGTTGGCAGCTAATAGATGTATCT 59.989 40.000 7.40 0.00 40.86 1.98
5590 6150 5.119279 CACGTTGGCAGCTAATAGATGTATC 59.881 44.000 7.40 0.00 33.43 2.24
5591 6151 4.991056 CACGTTGGCAGCTAATAGATGTAT 59.009 41.667 7.40 0.00 33.43 2.29
5592 6152 4.098807 TCACGTTGGCAGCTAATAGATGTA 59.901 41.667 7.40 0.00 33.43 2.29
5593 6153 3.118775 TCACGTTGGCAGCTAATAGATGT 60.119 43.478 7.40 0.00 33.43 3.06
5594 6154 3.457234 TCACGTTGGCAGCTAATAGATG 58.543 45.455 0.46 0.46 34.14 2.90
5595 6155 3.819564 TCACGTTGGCAGCTAATAGAT 57.180 42.857 0.00 0.00 0.00 1.98
5596 6156 3.603158 TTCACGTTGGCAGCTAATAGA 57.397 42.857 0.00 0.00 0.00 1.98
5597 6157 3.248602 GGATTCACGTTGGCAGCTAATAG 59.751 47.826 0.00 0.00 0.00 1.73
5598 6158 3.202906 GGATTCACGTTGGCAGCTAATA 58.797 45.455 0.00 0.00 0.00 0.98
5599 6159 2.017049 GGATTCACGTTGGCAGCTAAT 58.983 47.619 0.00 0.00 0.00 1.73
5600 6160 1.271108 TGGATTCACGTTGGCAGCTAA 60.271 47.619 0.00 0.00 0.00 3.09
5601 6161 0.323302 TGGATTCACGTTGGCAGCTA 59.677 50.000 0.00 0.00 0.00 3.32
5602 6162 1.073025 TGGATTCACGTTGGCAGCT 59.927 52.632 0.00 0.00 0.00 4.24
5603 6163 1.210155 GTGGATTCACGTTGGCAGC 59.790 57.895 0.00 0.00 33.87 5.25
5604 6164 1.167851 ATGTGGATTCACGTTGGCAG 58.832 50.000 0.00 0.00 46.42 4.85
5605 6165 2.481289 TATGTGGATTCACGTTGGCA 57.519 45.000 3.63 0.00 46.42 4.92
5606 6166 2.682856 ACATATGTGGATTCACGTTGGC 59.317 45.455 7.78 0.00 46.42 4.52
5607 6167 4.394610 TGAACATATGTGGATTCACGTTGG 59.605 41.667 9.63 0.00 46.42 3.77
5608 6168 5.544136 TGAACATATGTGGATTCACGTTG 57.456 39.130 9.63 5.69 46.42 4.10
5609 6169 5.106317 GGTTGAACATATGTGGATTCACGTT 60.106 40.000 9.63 0.00 46.42 3.99
5610 6170 4.394920 GGTTGAACATATGTGGATTCACGT 59.605 41.667 9.63 3.83 46.42 4.49
5611 6171 4.394610 TGGTTGAACATATGTGGATTCACG 59.605 41.667 9.63 0.00 46.42 4.35
5612 6172 5.895636 TGGTTGAACATATGTGGATTCAC 57.104 39.130 9.63 0.00 43.87 3.18
5613 6173 6.907853 TTTGGTTGAACATATGTGGATTCA 57.092 33.333 9.63 6.49 0.00 2.57
5619 6179 9.757859 GCAAAATAATTTGGTTGAACATATGTG 57.242 29.630 9.63 0.00 44.93 3.21
5620 6180 9.499479 TGCAAAATAATTTGGTTGAACATATGT 57.501 25.926 1.41 1.41 44.93 2.29
5621 6181 9.976255 CTGCAAAATAATTTGGTTGAACATATG 57.024 29.630 0.00 0.00 44.93 1.78
5622 6182 8.667463 GCTGCAAAATAATTTGGTTGAACATAT 58.333 29.630 5.45 0.00 44.93 1.78
5623 6183 7.877097 AGCTGCAAAATAATTTGGTTGAACATA 59.123 29.630 1.02 0.00 44.93 2.29
5624 6184 6.711645 AGCTGCAAAATAATTTGGTTGAACAT 59.288 30.769 1.02 0.00 44.93 2.71
5625 6185 6.018098 CAGCTGCAAAATAATTTGGTTGAACA 60.018 34.615 0.00 0.00 44.93 3.18
5626 6186 6.202570 TCAGCTGCAAAATAATTTGGTTGAAC 59.797 34.615 9.47 0.00 44.93 3.18
5627 6187 6.286758 TCAGCTGCAAAATAATTTGGTTGAA 58.713 32.000 9.47 0.00 44.93 2.69
5628 6188 5.851720 TCAGCTGCAAAATAATTTGGTTGA 58.148 33.333 9.47 1.25 44.93 3.18
5629 6189 6.542574 TTCAGCTGCAAAATAATTTGGTTG 57.457 33.333 9.47 0.00 44.93 3.77
5630 6190 6.711645 ACATTCAGCTGCAAAATAATTTGGTT 59.288 30.769 9.47 0.00 44.93 3.67
5631 6191 6.148150 CACATTCAGCTGCAAAATAATTTGGT 59.852 34.615 9.47 0.00 44.93 3.67
5632 6192 6.369340 TCACATTCAGCTGCAAAATAATTTGG 59.631 34.615 9.47 0.00 44.93 3.28
5634 6194 7.156673 ACTCACATTCAGCTGCAAAATAATTT 58.843 30.769 9.47 0.00 0.00 1.82
5635 6195 6.694447 ACTCACATTCAGCTGCAAAATAATT 58.306 32.000 9.47 0.00 0.00 1.40
5636 6196 6.276832 ACTCACATTCAGCTGCAAAATAAT 57.723 33.333 9.47 0.00 0.00 1.28
5637 6197 5.710513 ACTCACATTCAGCTGCAAAATAA 57.289 34.783 9.47 0.00 0.00 1.40
5638 6198 5.710513 AACTCACATTCAGCTGCAAAATA 57.289 34.783 9.47 0.00 0.00 1.40
5639 6199 4.595762 AACTCACATTCAGCTGCAAAAT 57.404 36.364 9.47 0.42 0.00 1.82
5640 6200 4.362279 GAAACTCACATTCAGCTGCAAAA 58.638 39.130 9.47 0.00 0.00 2.44
5641 6201 3.548616 CGAAACTCACATTCAGCTGCAAA 60.549 43.478 9.47 0.00 0.00 3.68
5642 6202 2.031769 CGAAACTCACATTCAGCTGCAA 60.032 45.455 9.47 4.90 0.00 4.08
5643 6203 1.532437 CGAAACTCACATTCAGCTGCA 59.468 47.619 9.47 0.00 0.00 4.41
5644 6204 1.727213 GCGAAACTCACATTCAGCTGC 60.727 52.381 9.47 0.00 0.00 5.25
5645 6205 1.532437 TGCGAAACTCACATTCAGCTG 59.468 47.619 7.63 7.63 31.94 4.24
5646 6206 1.882912 TGCGAAACTCACATTCAGCT 58.117 45.000 0.00 0.00 31.94 4.24
5647 6207 2.686558 TTGCGAAACTCACATTCAGC 57.313 45.000 0.00 0.00 0.00 4.26
5648 6208 4.153986 GTGATTGCGAAACTCACATTCAG 58.846 43.478 11.57 0.00 39.24 3.02
5649 6209 3.363871 CGTGATTGCGAAACTCACATTCA 60.364 43.478 14.90 0.00 39.36 2.57
5650 6210 3.155998 CGTGATTGCGAAACTCACATTC 58.844 45.455 14.90 0.00 39.36 2.67
5651 6211 2.665519 GCGTGATTGCGAAACTCACATT 60.666 45.455 14.90 0.00 39.36 2.71
5652 6212 1.135972 GCGTGATTGCGAAACTCACAT 60.136 47.619 14.90 0.00 39.36 3.21
5653 6213 0.234625 GCGTGATTGCGAAACTCACA 59.765 50.000 14.90 0.00 39.36 3.58
5654 6214 0.234625 TGCGTGATTGCGAAACTCAC 59.765 50.000 8.04 8.04 37.81 3.51
5655 6215 1.155889 ATGCGTGATTGCGAAACTCA 58.844 45.000 0.00 0.00 37.81 3.41
5656 6216 2.247311 AATGCGTGATTGCGAAACTC 57.753 45.000 0.00 0.00 37.81 3.01
5657 6217 2.031245 TCAAATGCGTGATTGCGAAACT 60.031 40.909 0.00 0.00 37.81 2.66
5658 6218 2.315011 TCAAATGCGTGATTGCGAAAC 58.685 42.857 0.00 0.00 37.81 2.78
5659 6219 2.695613 TCAAATGCGTGATTGCGAAA 57.304 40.000 0.00 0.00 37.81 3.46
5660 6220 2.095314 ACATCAAATGCGTGATTGCGAA 60.095 40.909 0.00 0.00 36.04 4.70
5661 6221 1.468127 ACATCAAATGCGTGATTGCGA 59.532 42.857 0.00 0.00 36.04 5.10
5662 6222 1.898938 ACATCAAATGCGTGATTGCG 58.101 45.000 0.00 0.00 36.04 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.