Multiple sequence alignment - TraesCS2D01G505700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G505700 chr2D 100.000 4614 0 0 1 4614 599915252 599919865 0.000000e+00 8521.0
1 TraesCS2D01G505700 chr2B 89.424 3839 222 67 1 3756 729626446 729630183 0.000000e+00 4671.0
2 TraesCS2D01G505700 chr2B 85.253 434 29 16 3812 4236 729630182 729630589 9.240000e-112 414.0
3 TraesCS2D01G505700 chr2B 86.873 259 30 2 1 255 729626813 729627071 2.100000e-73 287.0
4 TraesCS2D01G505700 chr2B 96.491 57 2 0 4460 4516 729632177 729632233 1.370000e-15 95.3
5 TraesCS2D01G505700 chr2A 90.423 3644 206 75 61 3638 733559880 733563446 0.000000e+00 4663.0
6 TraesCS2D01G505700 chr2A 92.369 249 11 6 4372 4614 733579323 733579569 9.500000e-92 348.0
7 TraesCS2D01G505700 chr2A 87.259 259 28 4 3790 4046 733580956 733581211 1.620000e-74 291.0
8 TraesCS2D01G505700 chr2A 86.477 281 16 12 3670 3941 733563447 733563714 5.840000e-74 289.0
9 TraesCS2D01G505700 chr2A 85.328 259 34 3 1 255 733560182 733560440 9.840000e-67 265.0
10 TraesCS2D01G505700 chr2A 97.333 75 2 0 1 75 733559790 733559864 1.350000e-25 128.0
11 TraesCS2D01G505700 chr4A 78.608 388 75 6 2753 3133 667844653 667845039 2.760000e-62 250.0
12 TraesCS2D01G505700 chr4A 76.412 301 52 12 3298 3579 617653041 617652741 1.340000e-30 145.0
13 TraesCS2D01G505700 chr4A 100.000 34 0 0 3298 3331 617542826 617542793 3.850000e-06 63.9
14 TraesCS2D01G505700 chr5B 77.027 296 49 11 3298 3574 702270758 702271053 8.000000e-33 152.0
15 TraesCS2D01G505700 chr6B 88.158 76 9 0 1148 1223 712666392 712666467 1.770000e-14 91.6
16 TraesCS2D01G505700 chr6D 85.897 78 11 0 1146 1223 467313517 467313594 2.960000e-12 84.2
17 TraesCS2D01G505700 chr6A 85.714 77 11 0 1146 1222 613767188 613767264 1.060000e-11 82.4
18 TraesCS2D01G505700 chr7B 83.051 59 10 0 1146 1204 475104224 475104282 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G505700 chr2D 599915252 599919865 4613 False 8521.000 8521 100.00000 1 4614 1 chr2D.!!$F1 4613
1 TraesCS2D01G505700 chr2B 729626446 729632233 5787 False 1366.825 4671 89.51025 1 4516 4 chr2B.!!$F1 4515
2 TraesCS2D01G505700 chr2A 733559790 733563714 3924 False 1336.250 4663 89.89025 1 3941 4 chr2A.!!$F1 3940
3 TraesCS2D01G505700 chr2A 733579323 733581211 1888 False 319.500 348 89.81400 3790 4614 2 chr2A.!!$F2 824

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
498 539 0.668401 GTTACGAGTTGGTGGACCCG 60.668 60.0 0.00 0.0 35.15 5.28 F
1375 1431 0.177373 GGATTCCCCACCAGTACGTC 59.823 60.0 0.00 0.0 34.14 4.34 F
1536 1614 0.179105 TGAAACTACCACACGCACGT 60.179 50.0 0.00 0.0 0.00 4.49 F
3233 3381 0.311790 AAATGCTGTTCGTGCAGGTG 59.688 50.0 6.26 0.0 44.04 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1861 1957 0.308993 GTCAGCACAAGACTGGTTGC 59.691 55.000 0.00 0.00 35.78 4.17 R
3363 3517 0.460109 TGACGATCGAGTTGCCATGG 60.460 55.000 24.34 7.63 0.00 3.66 R
3396 3550 1.075536 AGGTTAAAAGTCAGGCCCCAG 59.924 52.381 0.00 0.00 0.00 4.45 R
4516 6103 0.101399 CGGACGCTGAGCTCATAAGT 59.899 55.000 18.63 16.85 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 154 5.482006 CTCACTCACCATGTAAAGTCATGA 58.518 41.667 8.04 0.00 45.41 3.07
148 187 2.814835 GGACCCAGTTGTCCGGTGT 61.815 63.158 0.00 0.00 44.98 4.16
166 205 4.748102 CGGTGTCAAAGACAAAGCTAACTA 59.252 41.667 0.82 0.00 44.49 2.24
278 319 3.767630 GACACAGTTGCCCGGTGGT 62.768 63.158 0.00 0.00 42.74 4.16
369 410 8.133024 ACCCGTATAATTATTATGGACGGTTA 57.867 34.615 25.17 0.00 42.23 2.85
373 414 9.507280 CGTATAATTATTATGGACGGTTACGAT 57.493 33.333 2.68 0.00 44.60 3.73
381 422 4.724074 TGGACGGTTACGATAAATGAGT 57.276 40.909 0.00 0.00 44.60 3.41
386 427 5.047847 ACGGTTACGATAAATGAGTGGATG 58.952 41.667 0.00 0.00 44.60 3.51
472 513 2.615912 GCCCTCACTCATCATGTAAAGC 59.384 50.000 0.00 0.00 0.00 3.51
480 521 3.872696 TCATCATGTAAAGCCATGTCGT 58.127 40.909 0.00 0.00 42.29 4.34
483 524 5.293324 TCATCATGTAAAGCCATGTCGTTAC 59.707 40.000 5.75 5.75 42.29 2.50
498 539 0.668401 GTTACGAGTTGGTGGACCCG 60.668 60.000 0.00 0.00 35.15 5.28
507 548 1.745489 GGTGGACCCGATTGTCTGC 60.745 63.158 0.00 0.00 35.54 4.26
528 569 2.880890 CTGGCAAAGACACAGCTAAACT 59.119 45.455 0.00 0.00 0.00 2.66
595 640 1.032014 ACCGGTGCAATTATCATGGC 58.968 50.000 6.12 0.00 0.00 4.40
610 655 3.299977 GGCCGGTGGGGACAAAAC 61.300 66.667 1.90 0.00 46.58 2.43
611 656 2.519780 GCCGGTGGGGACAAAACA 60.520 61.111 1.90 0.00 46.06 2.83
622 667 3.078837 GGGACAAAACAAGCGGATAAGA 58.921 45.455 0.00 0.00 0.00 2.10
642 687 8.948631 ATAAGACCAACAACTCATACATACAG 57.051 34.615 0.00 0.00 0.00 2.74
692 737 2.235402 CCATATATACCCACCGTCCCAC 59.765 54.545 0.00 0.00 0.00 4.61
728 773 3.070015 ACCCCTTCAGCAAGAAACAAATG 59.930 43.478 0.00 0.00 35.40 2.32
729 774 3.070015 CCCCTTCAGCAAGAAACAAATGT 59.930 43.478 0.00 0.00 35.40 2.71
732 777 6.279882 CCCTTCAGCAAGAAACAAATGTAAA 58.720 36.000 0.00 0.00 35.40 2.01
733 778 6.930722 CCCTTCAGCAAGAAACAAATGTAAAT 59.069 34.615 0.00 0.00 35.40 1.40
736 781 6.815089 TCAGCAAGAAACAAATGTAAATGGT 58.185 32.000 0.00 0.00 0.00 3.55
742 787 8.356657 CAAGAAACAAATGTAAATGGTAGGTCA 58.643 33.333 0.00 0.00 0.00 4.02
743 788 8.650143 AGAAACAAATGTAAATGGTAGGTCAT 57.350 30.769 0.00 0.00 0.00 3.06
744 789 9.088987 AGAAACAAATGTAAATGGTAGGTCATT 57.911 29.630 0.00 0.00 38.84 2.57
755 800 8.803397 AAATGGTAGGTCATTAACTAGAAACC 57.197 34.615 0.00 0.00 36.45 3.27
759 804 9.103582 TGGTAGGTCATTAACTAGAAACCTTAA 57.896 33.333 0.00 0.00 38.13 1.85
763 808 8.612145 AGGTCATTAACTAGAAACCTTAACCAT 58.388 33.333 0.00 0.00 33.39 3.55
771 816 5.188988 AGAAACCTTAACCATAACCTCCC 57.811 43.478 0.00 0.00 0.00 4.30
773 818 5.075344 AGAAACCTTAACCATAACCTCCCAA 59.925 40.000 0.00 0.00 0.00 4.12
919 966 2.486663 CGTCCGTCCCATCCATCGA 61.487 63.158 0.00 0.00 0.00 3.59
922 969 2.658593 CGTCCCATCCATCGACGC 60.659 66.667 0.00 0.00 42.37 5.19
987 1037 1.153549 CCGTAGAGCCAGCAGTTCC 60.154 63.158 0.00 0.00 0.00 3.62
1020 1070 3.148279 GAGGACGGCCGGAGTGAT 61.148 66.667 31.76 6.78 39.96 3.06
1257 1311 0.693049 TTCCCCTTGTTGAGCTCCTC 59.307 55.000 12.15 4.75 0.00 3.71
1299 1355 6.265577 ACTTCTTTTTCACCATTGTTCTTCG 58.734 36.000 0.00 0.00 0.00 3.79
1303 1359 2.254546 TCACCATTGTTCTTCGTGCT 57.745 45.000 0.00 0.00 0.00 4.40
1322 1378 4.972440 GTGCTGTGATTGTTTTTCTCTGAC 59.028 41.667 0.00 0.00 0.00 3.51
1337 1393 3.129462 TCTCTGACATCTCGTGTTCATCC 59.871 47.826 0.00 0.00 42.36 3.51
1375 1431 0.177373 GGATTCCCCACCAGTACGTC 59.823 60.000 0.00 0.00 34.14 4.34
1430 1486 1.021202 TGTGGTGAGTTTTCTTGCGG 58.979 50.000 0.00 0.00 0.00 5.69
1441 1497 1.455248 TTCTTGCGGTTTTATCCCCG 58.545 50.000 0.00 0.00 46.90 5.73
1446 1502 0.392060 GCGGTTTTATCCCCGTCACT 60.392 55.000 0.00 0.00 45.91 3.41
1461 1539 4.760204 CCCGTCACTAGTTTCCTTTTCAAT 59.240 41.667 0.00 0.00 0.00 2.57
1503 1581 4.576873 TGAGAATTTGTTGTTAAGGCACGA 59.423 37.500 0.00 0.00 0.00 4.35
1509 1587 4.481930 TGTTGTTAAGGCACGAAATCTG 57.518 40.909 0.00 0.00 0.00 2.90
1530 1608 5.763204 TCTGGAAAATCTGAAACTACCACAC 59.237 40.000 0.00 0.00 0.00 3.82
1531 1609 4.513692 TGGAAAATCTGAAACTACCACACG 59.486 41.667 0.00 0.00 0.00 4.49
1532 1610 4.464112 GAAAATCTGAAACTACCACACGC 58.536 43.478 0.00 0.00 0.00 5.34
1533 1611 2.831685 ATCTGAAACTACCACACGCA 57.168 45.000 0.00 0.00 0.00 5.24
1534 1612 1.860676 TCTGAAACTACCACACGCAC 58.139 50.000 0.00 0.00 0.00 5.34
1535 1613 0.506932 CTGAAACTACCACACGCACG 59.493 55.000 0.00 0.00 0.00 5.34
1536 1614 0.179105 TGAAACTACCACACGCACGT 60.179 50.000 0.00 0.00 0.00 4.49
1537 1615 1.066757 TGAAACTACCACACGCACGTA 59.933 47.619 0.00 0.00 0.00 3.57
1538 1616 1.717645 GAAACTACCACACGCACGTAG 59.282 52.381 0.00 0.00 36.40 3.51
1539 1617 0.665369 AACTACCACACGCACGTAGC 60.665 55.000 0.00 0.00 40.87 3.58
1541 1619 2.480853 CTACCACACGCACGTAGCCA 62.481 60.000 0.00 0.00 41.38 4.75
1542 1620 2.480853 TACCACACGCACGTAGCCAG 62.481 60.000 0.00 0.00 41.38 4.85
1543 1621 2.355837 CACACGCACGTAGCCAGT 60.356 61.111 0.00 0.00 41.38 4.00
1545 1623 0.665068 CACACGCACGTAGCCAGTAA 60.665 55.000 0.00 0.00 41.38 2.24
1601 1683 6.727824 AATGGATCGATCGTTTTCATATCC 57.272 37.500 18.81 17.26 32.34 2.59
1618 1700 0.834612 TCCGTTCATTATTCCCGGCT 59.165 50.000 0.00 0.00 38.54 5.52
1619 1701 2.040939 TCCGTTCATTATTCCCGGCTA 58.959 47.619 0.00 0.00 38.54 3.93
1620 1702 2.140717 CCGTTCATTATTCCCGGCTAC 58.859 52.381 0.00 0.00 0.00 3.58
1622 1704 2.484065 CGTTCATTATTCCCGGCTACCA 60.484 50.000 0.00 0.00 0.00 3.25
1624 1706 3.935818 TCATTATTCCCGGCTACCAAA 57.064 42.857 0.00 0.00 0.00 3.28
1646 1737 3.506067 ACCCGATGCACTAAAAAGGAAAG 59.494 43.478 0.00 0.00 0.00 2.62
1808 1904 2.563471 AATCTGCGTCTCGGTAAGTC 57.437 50.000 0.00 0.00 0.00 3.01
1809 1905 1.460504 ATCTGCGTCTCGGTAAGTCA 58.539 50.000 0.00 0.00 0.00 3.41
1810 1906 0.520404 TCTGCGTCTCGGTAAGTCAC 59.480 55.000 0.00 0.00 0.00 3.67
1827 1923 3.682858 AGTCACCACCAAATTAATCGTCG 59.317 43.478 0.00 0.00 0.00 5.12
1833 1929 3.909574 CACCAAATTAATCGTCGCGTTTT 59.090 39.130 5.77 0.00 0.00 2.43
1844 1940 2.217847 CGTCGCGTTTTCTTCTTCTTCA 59.782 45.455 5.77 0.00 0.00 3.02
1855 1951 9.230932 GTTTTCTTCTTCTTCATCTTCAAGTTG 57.769 33.333 0.00 0.00 0.00 3.16
1857 1953 7.721286 TCTTCTTCTTCATCTTCAAGTTGTC 57.279 36.000 2.11 0.00 0.00 3.18
1858 1954 7.275183 TCTTCTTCTTCATCTTCAAGTTGTCA 58.725 34.615 2.11 0.00 0.00 3.58
1859 1955 7.770433 TCTTCTTCTTCATCTTCAAGTTGTCAA 59.230 33.333 2.11 0.00 0.00 3.18
1861 1957 7.868775 TCTTCTTCATCTTCAAGTTGTCAATG 58.131 34.615 2.11 5.46 0.00 2.82
1913 2009 0.469705 TGTGCTGATTGGCCCAAACT 60.470 50.000 0.00 0.00 0.00 2.66
2119 2215 0.512952 CTTTCCGGTGAGCGTTCAAG 59.487 55.000 2.60 1.09 34.49 3.02
2120 2216 1.503818 TTTCCGGTGAGCGTTCAAGC 61.504 55.000 2.60 0.00 34.49 4.01
2195 2295 1.068281 TGATCAGAGGAGCTCGATTGC 59.932 52.381 7.83 0.00 35.36 3.56
2340 2451 1.605058 TTCTTCTCTCTTCCCGGGCG 61.605 60.000 18.49 9.76 0.00 6.13
2349 2460 2.365095 CTTCCCGGGCGTCATCTACC 62.365 65.000 18.49 0.00 0.00 3.18
2350 2461 4.280494 CCCGGGCGTCATCTACCG 62.280 72.222 8.08 0.00 45.57 4.02
2407 2536 1.186200 GGTTCCCTTGGCTGAAATCC 58.814 55.000 0.00 0.00 0.00 3.01
2651 2780 1.122227 GGCCATTACCTGGGTACGTA 58.878 55.000 0.00 0.00 46.06 3.57
2652 2781 1.069668 GGCCATTACCTGGGTACGTAG 59.930 57.143 0.00 0.00 46.06 3.51
2653 2782 1.758862 GCCATTACCTGGGTACGTAGT 59.241 52.381 0.00 0.00 46.06 2.73
2694 2823 1.576356 GATCGTCCTCACTTCATGCC 58.424 55.000 0.00 0.00 0.00 4.40
3140 3284 4.314440 GCAGGCCGTGAGTCCACA 62.314 66.667 0.00 0.00 43.34 4.17
3202 3346 2.512692 ATTTGCATGCCCACTGACTA 57.487 45.000 16.68 0.00 0.00 2.59
3207 3355 2.025981 TGCATGCCCACTGACTATTCTT 60.026 45.455 16.68 0.00 0.00 2.52
3233 3381 0.311790 AAATGCTGTTCGTGCAGGTG 59.688 50.000 6.26 0.00 44.04 4.00
3266 3414 0.809385 CATGGGCTGTTGCTTCTGAG 59.191 55.000 0.00 0.00 39.59 3.35
3363 3517 4.176271 GCCACAGGTTTTCAATCTATTGC 58.824 43.478 0.00 0.00 37.68 3.56
3396 3550 3.423123 CGATCGTCAGGCTGTTTGTTAAC 60.423 47.826 15.27 0.00 34.75 2.01
3443 3598 1.412079 TTCATTGCCCTTTGTGCAGT 58.588 45.000 0.00 0.00 40.35 4.40
3505 3660 4.555709 AAGGACAACACGCCGGCA 62.556 61.111 28.98 0.00 0.00 5.69
3562 3717 2.588314 CTGGCGCTCATCCTGCTC 60.588 66.667 7.64 0.00 0.00 4.26
3568 3723 1.153005 GCTCATCCTGCTCCCCAAG 60.153 63.158 0.00 0.00 0.00 3.61
3621 3776 1.302033 GAGGGCACTGATATGGCGG 60.302 63.158 0.00 0.00 45.84 6.13
3638 3793 1.537135 GCGGTACATCTTGAGGAGAGC 60.537 57.143 0.00 0.00 37.93 4.09
3639 3794 1.067821 CGGTACATCTTGAGGAGAGCC 59.932 57.143 0.00 0.00 37.93 4.70
3640 3795 1.414550 GGTACATCTTGAGGAGAGCCC 59.585 57.143 0.00 0.00 37.93 5.19
3642 3797 1.333636 ACATCTTGAGGAGAGCCCGG 61.334 60.000 0.00 0.00 37.93 5.73
3660 3815 4.659172 CGGGGACTTGGGCTGCAA 62.659 66.667 0.50 0.00 0.00 4.08
3661 3816 2.203625 GGGGACTTGGGCTGCAAA 60.204 61.111 0.50 0.00 0.00 3.68
3662 3817 2.574018 GGGGACTTGGGCTGCAAAC 61.574 63.158 0.50 0.00 0.00 2.93
3663 3818 1.531602 GGGACTTGGGCTGCAAACT 60.532 57.895 0.50 0.00 0.00 2.66
3664 3819 0.251165 GGGACTTGGGCTGCAAACTA 60.251 55.000 0.50 0.00 0.00 2.24
3665 3820 0.881796 GGACTTGGGCTGCAAACTAC 59.118 55.000 0.50 0.00 0.00 2.73
3666 3821 1.604604 GACTTGGGCTGCAAACTACA 58.395 50.000 0.50 0.00 0.00 2.74
3667 3822 1.537202 GACTTGGGCTGCAAACTACAG 59.463 52.381 0.50 0.00 38.22 2.74
3693 3848 4.909696 TGTTCTCTAGCTAGCTGATGTC 57.090 45.455 27.68 12.91 0.00 3.06
3710 3867 6.681368 GCTGATGTCGATATATATGTGAGCCA 60.681 42.308 0.00 0.00 0.00 4.75
3738 3898 5.124776 TCGTGTTTCTGTTTTCATTTCCACT 59.875 36.000 0.00 0.00 0.00 4.00
3757 3917 1.262950 CTGCCGTTTGTTCATTCGTCA 59.737 47.619 0.00 0.00 0.00 4.35
3773 3935 1.398390 CGTCATGCTTTTAGCTGGGAC 59.602 52.381 0.00 4.57 42.97 4.46
3774 3936 2.716217 GTCATGCTTTTAGCTGGGACT 58.284 47.619 0.00 0.00 42.97 3.85
3775 3937 2.421424 GTCATGCTTTTAGCTGGGACTG 59.579 50.000 0.00 0.00 42.97 3.51
3776 3938 1.747355 CATGCTTTTAGCTGGGACTGG 59.253 52.381 0.00 0.00 42.97 4.00
3777 3939 0.038166 TGCTTTTAGCTGGGACTGGG 59.962 55.000 0.00 0.00 42.97 4.45
3778 3940 0.328258 GCTTTTAGCTGGGACTGGGA 59.672 55.000 0.00 0.00 38.45 4.37
3779 3941 1.950954 GCTTTTAGCTGGGACTGGGAC 60.951 57.143 0.00 0.00 38.45 4.46
3780 3942 1.630878 CTTTTAGCTGGGACTGGGACT 59.369 52.381 0.00 0.00 0.00 3.85
3781 3943 1.276622 TTTAGCTGGGACTGGGACTC 58.723 55.000 0.00 0.00 0.00 3.36
3782 3944 0.413832 TTAGCTGGGACTGGGACTCT 59.586 55.000 0.00 0.00 0.00 3.24
3783 3945 0.324738 TAGCTGGGACTGGGACTCTG 60.325 60.000 0.00 0.00 0.00 3.35
3784 3946 2.664081 GCTGGGACTGGGACTCTGG 61.664 68.421 0.00 0.00 0.00 3.86
3785 3947 1.992277 CTGGGACTGGGACTCTGGG 60.992 68.421 0.00 0.00 0.00 4.45
3786 3948 2.450243 GGGACTGGGACTCTGGGA 59.550 66.667 0.00 0.00 0.00 4.37
3834 3997 2.159382 CCCTGGTCGCAATGTTTTAGT 58.841 47.619 0.00 0.00 0.00 2.24
3972 4140 1.581602 CAAACGTGTTTCCAACTTGCG 59.418 47.619 0.00 0.00 0.00 4.85
3973 4141 0.099791 AACGTGTTTCCAACTTGCGG 59.900 50.000 0.00 0.00 0.00 5.69
3974 4142 1.657181 CGTGTTTCCAACTTGCGGC 60.657 57.895 0.00 0.00 0.00 6.53
3975 4143 1.299850 GTGTTTCCAACTTGCGGCC 60.300 57.895 0.00 0.00 0.00 6.13
3977 4145 3.291383 TTTCCAACTTGCGGCCCG 61.291 61.111 0.00 0.00 0.00 6.13
4004 4172 6.813293 AAATTTCTTGCCCCAGCTAATAAT 57.187 33.333 0.00 0.00 40.80 1.28
4005 4173 6.813293 AATTTCTTGCCCCAGCTAATAATT 57.187 33.333 0.00 0.00 40.80 1.40
4054 4235 5.125578 ACAAAAACACCTTCCTCTTTGACTC 59.874 40.000 0.00 0.00 0.00 3.36
4093 4274 3.722728 AAAGGCTGACTGCAAGAAAAG 57.277 42.857 6.65 0.00 45.15 2.27
4100 4281 3.214328 TGACTGCAAGAAAAGGTCTTCC 58.786 45.455 2.27 0.00 45.25 3.46
4145 4326 5.118286 CCCCATGTGCCTGAAAATAAATTC 58.882 41.667 0.00 0.00 0.00 2.17
4146 4327 5.338219 CCCCATGTGCCTGAAAATAAATTCA 60.338 40.000 0.00 0.00 37.70 2.57
4148 4329 5.581874 CCATGTGCCTGAAAATAAATTCACC 59.418 40.000 0.00 0.00 35.55 4.02
4151 4332 5.774690 TGTGCCTGAAAATAAATTCACCTCT 59.225 36.000 0.00 0.00 35.55 3.69
4153 4334 5.105063 GCCTGAAAATAAATTCACCTCTGC 58.895 41.667 0.00 0.00 35.55 4.26
4154 4335 5.105595 GCCTGAAAATAAATTCACCTCTGCT 60.106 40.000 0.00 0.00 35.55 4.24
4155 4336 6.573094 GCCTGAAAATAAATTCACCTCTGCTT 60.573 38.462 0.00 0.00 35.55 3.91
4157 4338 6.611381 TGAAAATAAATTCACCTCTGCTTCG 58.389 36.000 0.00 0.00 34.50 3.79
4159 4340 1.168714 AAATTCACCTCTGCTTCGGC 58.831 50.000 0.00 0.00 42.19 5.54
4160 4341 0.678048 AATTCACCTCTGCTTCGGCC 60.678 55.000 0.00 0.00 40.91 6.13
4161 4342 1.841302 ATTCACCTCTGCTTCGGCCA 61.841 55.000 2.24 0.00 40.91 5.36
4164 4345 2.348998 CCTCTGCTTCGGCCACTT 59.651 61.111 2.24 0.00 40.91 3.16
4174 4355 3.650950 GGCCACTTCTCCCAGCCA 61.651 66.667 0.00 0.00 43.32 4.75
4180 4361 0.398318 ACTTCTCCCAGCCACTTCAC 59.602 55.000 0.00 0.00 0.00 3.18
4197 4378 3.703001 TCACTGTTCATCTTCTTCCCC 57.297 47.619 0.00 0.00 0.00 4.81
4201 4382 4.157289 CACTGTTCATCTTCTTCCCCAATG 59.843 45.833 0.00 0.00 0.00 2.82
4202 4383 3.698040 CTGTTCATCTTCTTCCCCAATGG 59.302 47.826 0.00 0.00 0.00 3.16
4208 4389 0.776810 TTCTTCCCCAATGGTGCAGA 59.223 50.000 0.00 0.00 34.77 4.26
4223 4404 2.603776 AGACCACCTCCGACCCAC 60.604 66.667 0.00 0.00 0.00 4.61
4236 4417 3.335729 CCCACCCCTAACCGCCTT 61.336 66.667 0.00 0.00 0.00 4.35
4261 4723 1.832912 CTATCCTCTGCACCCCCAC 59.167 63.158 0.00 0.00 0.00 4.61
4282 5868 5.403512 CACCCCTAAAGATAGATAGTGGGA 58.596 45.833 0.00 0.00 35.17 4.37
4283 5869 5.246429 CACCCCTAAAGATAGATAGTGGGAC 59.754 48.000 0.00 0.00 35.17 4.46
4297 5883 1.682684 GGGACTGCCTCTTCTCCGA 60.683 63.158 0.00 0.00 0.00 4.55
4298 5884 1.045911 GGGACTGCCTCTTCTCCGAT 61.046 60.000 0.00 0.00 0.00 4.18
4299 5885 0.103937 GGACTGCCTCTTCTCCGATG 59.896 60.000 0.00 0.00 0.00 3.84
4300 5886 1.107114 GACTGCCTCTTCTCCGATGA 58.893 55.000 0.00 0.00 0.00 2.92
4301 5887 1.066908 GACTGCCTCTTCTCCGATGAG 59.933 57.143 0.00 0.00 40.17 2.90
4302 5888 0.249405 CTGCCTCTTCTCCGATGAGC 60.249 60.000 0.00 0.00 38.58 4.26
4303 5889 0.685785 TGCCTCTTCTCCGATGAGCT 60.686 55.000 0.00 0.00 38.58 4.09
4321 5907 5.171476 TGAGCTCGGAATGAACTAGAAAAG 58.829 41.667 9.64 0.00 0.00 2.27
4327 5913 4.091509 CGGAATGAACTAGAAAAGGTGACG 59.908 45.833 0.00 0.00 0.00 4.35
4329 5915 5.120363 GGAATGAACTAGAAAAGGTGACGAC 59.880 44.000 0.00 0.00 0.00 4.34
4330 5916 4.659111 TGAACTAGAAAAGGTGACGACA 57.341 40.909 0.00 0.00 0.00 4.35
4347 5934 4.844267 ACGACACGAAGAAAATTTTCAGG 58.156 39.130 28.00 19.28 39.61 3.86
4351 5938 3.735746 CACGAAGAAAATTTTCAGGCACC 59.264 43.478 28.00 11.86 39.61 5.01
4353 5940 3.317150 GAAGAAAATTTTCAGGCACCCG 58.683 45.455 28.00 0.00 39.61 5.28
4354 5941 2.593026 AGAAAATTTTCAGGCACCCGA 58.407 42.857 28.00 0.00 39.61 5.14
4355 5942 2.558359 AGAAAATTTTCAGGCACCCGAG 59.442 45.455 28.00 0.00 39.61 4.63
4357 5944 2.514458 AATTTTCAGGCACCCGAGAT 57.486 45.000 0.00 0.00 0.00 2.75
4359 5946 3.864789 ATTTTCAGGCACCCGAGATAT 57.135 42.857 0.00 0.00 0.00 1.63
4361 5948 4.336889 TTTTCAGGCACCCGAGATATAG 57.663 45.455 0.00 0.00 0.00 1.31
4363 5950 0.969149 CAGGCACCCGAGATATAGCA 59.031 55.000 0.00 0.00 0.00 3.49
4366 5953 2.438021 AGGCACCCGAGATATAGCAAAA 59.562 45.455 0.00 0.00 0.00 2.44
4367 5954 2.548480 GGCACCCGAGATATAGCAAAAC 59.452 50.000 0.00 0.00 0.00 2.43
4368 5955 3.467803 GCACCCGAGATATAGCAAAACT 58.532 45.455 0.00 0.00 0.00 2.66
4372 5959 4.130118 CCCGAGATATAGCAAAACTGCTT 58.870 43.478 4.74 0.00 43.52 3.91
4373 5960 4.576463 CCCGAGATATAGCAAAACTGCTTT 59.424 41.667 4.74 0.09 43.52 3.51
4374 5961 5.066505 CCCGAGATATAGCAAAACTGCTTTT 59.933 40.000 4.74 0.00 43.52 2.27
4414 6001 0.381801 CTTGCACACTGAACACACCC 59.618 55.000 0.00 0.00 0.00 4.61
4415 6002 0.322906 TTGCACACTGAACACACCCA 60.323 50.000 0.00 0.00 0.00 4.51
4418 6005 1.001378 GCACACTGAACACACCCAATC 60.001 52.381 0.00 0.00 0.00 2.67
4435 6022 7.393515 ACACCCAATCTTCCTAAATCTGTTTAC 59.606 37.037 0.00 0.00 0.00 2.01
4437 6024 7.393515 ACCCAATCTTCCTAAATCTGTTTACAC 59.606 37.037 0.00 0.00 0.00 2.90
4438 6025 7.393234 CCCAATCTTCCTAAATCTGTTTACACA 59.607 37.037 0.00 0.00 0.00 3.72
4439 6026 8.792633 CCAATCTTCCTAAATCTGTTTACACAA 58.207 33.333 0.00 0.00 30.36 3.33
4443 6030 9.403583 TCTTCCTAAATCTGTTTACACAAAAGT 57.596 29.630 0.00 0.00 30.36 2.66
4446 6033 9.841295 TCCTAAATCTGTTTACACAAAAGTAGT 57.159 29.630 0.00 0.00 30.36 2.73
4449 6036 8.747538 AAATCTGTTTACACAAAAGTAGTCCT 57.252 30.769 0.00 0.00 30.36 3.85
4450 6037 8.747538 AATCTGTTTACACAAAAGTAGTCCTT 57.252 30.769 0.00 0.00 30.36 3.36
4451 6038 7.548196 TCTGTTTACACAAAAGTAGTCCTTG 57.452 36.000 0.00 0.00 32.32 3.61
4452 6039 6.037830 TCTGTTTACACAAAAGTAGTCCTTGC 59.962 38.462 0.00 0.00 32.32 4.01
4453 6040 5.648526 TGTTTACACAAAAGTAGTCCTTGCA 59.351 36.000 0.00 0.00 32.32 4.08
4454 6041 5.744666 TTACACAAAAGTAGTCCTTGCAC 57.255 39.130 0.00 0.00 32.32 4.57
4455 6042 3.616219 ACACAAAAGTAGTCCTTGCACA 58.384 40.909 0.00 0.00 32.32 4.57
4456 6043 3.377172 ACACAAAAGTAGTCCTTGCACAC 59.623 43.478 0.00 0.00 32.32 3.82
4457 6044 3.627577 CACAAAAGTAGTCCTTGCACACT 59.372 43.478 0.00 0.00 32.32 3.55
4458 6045 3.627577 ACAAAAGTAGTCCTTGCACACTG 59.372 43.478 2.94 0.00 32.32 3.66
4512 6099 3.186613 GGACGAATCAACCAAAGAGACAC 59.813 47.826 0.00 0.00 0.00 3.67
4516 6103 4.935205 CGAATCAACCAAAGAGACACCATA 59.065 41.667 0.00 0.00 0.00 2.74
4517 6104 5.163854 CGAATCAACCAAAGAGACACCATAC 60.164 44.000 0.00 0.00 0.00 2.39
4518 6105 4.974645 TCAACCAAAGAGACACCATACT 57.025 40.909 0.00 0.00 0.00 2.12
4519 6106 5.304686 TCAACCAAAGAGACACCATACTT 57.695 39.130 0.00 0.00 0.00 2.24
4520 6107 6.428083 TCAACCAAAGAGACACCATACTTA 57.572 37.500 0.00 0.00 0.00 2.24
4521 6108 7.016153 TCAACCAAAGAGACACCATACTTAT 57.984 36.000 0.00 0.00 0.00 1.73
4522 6109 6.878923 TCAACCAAAGAGACACCATACTTATG 59.121 38.462 0.00 0.00 0.00 1.90
4523 6110 6.620877 ACCAAAGAGACACCATACTTATGA 57.379 37.500 0.00 0.00 35.75 2.15
4524 6111 6.644347 ACCAAAGAGACACCATACTTATGAG 58.356 40.000 0.00 0.00 35.75 2.90
4525 6112 5.525378 CCAAAGAGACACCATACTTATGAGC 59.475 44.000 0.00 0.00 35.75 4.26
4526 6113 6.344500 CAAAGAGACACCATACTTATGAGCT 58.656 40.000 0.00 0.00 35.75 4.09
4527 6114 5.782893 AGAGACACCATACTTATGAGCTC 57.217 43.478 6.82 6.82 35.75 4.09
4528 6115 5.204292 AGAGACACCATACTTATGAGCTCA 58.796 41.667 20.79 20.79 35.75 4.26
4529 6116 5.301551 AGAGACACCATACTTATGAGCTCAG 59.698 44.000 22.96 11.21 35.75 3.35
4530 6117 4.054671 GACACCATACTTATGAGCTCAGC 58.945 47.826 22.96 0.00 35.75 4.26
4531 6118 3.055591 CACCATACTTATGAGCTCAGCG 58.944 50.000 22.96 14.41 35.75 5.18
4532 6119 2.695666 ACCATACTTATGAGCTCAGCGT 59.304 45.455 22.96 19.05 35.75 5.07
4533 6120 3.243569 ACCATACTTATGAGCTCAGCGTC 60.244 47.826 22.96 0.00 35.75 5.19
4534 6121 3.312828 CATACTTATGAGCTCAGCGTCC 58.687 50.000 22.96 0.00 35.75 4.79
4535 6122 0.101399 ACTTATGAGCTCAGCGTCCG 59.899 55.000 22.96 9.25 0.00 4.79
4536 6123 0.101399 CTTATGAGCTCAGCGTCCGT 59.899 55.000 22.96 5.74 0.00 4.69
4537 6124 0.530744 TTATGAGCTCAGCGTCCGTT 59.469 50.000 22.96 4.95 0.00 4.44
4538 6125 0.530744 TATGAGCTCAGCGTCCGTTT 59.469 50.000 22.96 4.17 0.00 3.60
4539 6126 0.737715 ATGAGCTCAGCGTCCGTTTC 60.738 55.000 22.96 0.00 0.00 2.78
4540 6127 1.372997 GAGCTCAGCGTCCGTTTCA 60.373 57.895 9.40 0.00 0.00 2.69
4541 6128 0.737715 GAGCTCAGCGTCCGTTTCAT 60.738 55.000 9.40 0.00 0.00 2.57
4542 6129 0.737715 AGCTCAGCGTCCGTTTCATC 60.738 55.000 0.00 0.00 0.00 2.92
4543 6130 0.737715 GCTCAGCGTCCGTTTCATCT 60.738 55.000 0.00 0.00 0.00 2.90
4544 6131 1.714794 CTCAGCGTCCGTTTCATCTT 58.285 50.000 0.00 0.00 0.00 2.40
4545 6132 2.069273 CTCAGCGTCCGTTTCATCTTT 58.931 47.619 0.00 0.00 0.00 2.52
4546 6133 2.066262 TCAGCGTCCGTTTCATCTTTC 58.934 47.619 0.00 0.00 0.00 2.62
4547 6134 1.798223 CAGCGTCCGTTTCATCTTTCA 59.202 47.619 0.00 0.00 0.00 2.69
4548 6135 2.223144 CAGCGTCCGTTTCATCTTTCAA 59.777 45.455 0.00 0.00 0.00 2.69
4549 6136 2.875933 AGCGTCCGTTTCATCTTTCAAA 59.124 40.909 0.00 0.00 0.00 2.69
4550 6137 3.058914 AGCGTCCGTTTCATCTTTCAAAG 60.059 43.478 0.00 0.00 0.00 2.77
4551 6138 3.059188 GCGTCCGTTTCATCTTTCAAAGA 60.059 43.478 1.30 1.30 42.69 2.52
4552 6139 4.702392 CGTCCGTTTCATCTTTCAAAGAG 58.298 43.478 5.94 0.00 41.61 2.85
4553 6140 4.377431 CGTCCGTTTCATCTTTCAAAGAGG 60.377 45.833 5.40 5.40 41.61 3.69
4554 6141 3.502211 TCCGTTTCATCTTTCAAAGAGGC 59.498 43.478 6.94 0.00 41.61 4.70
4555 6142 3.253188 CCGTTTCATCTTTCAAAGAGGCA 59.747 43.478 6.94 0.00 41.61 4.75
4556 6143 4.470462 CGTTTCATCTTTCAAAGAGGCAG 58.530 43.478 6.94 0.00 41.61 4.85
4557 6144 4.614535 CGTTTCATCTTTCAAAGAGGCAGG 60.615 45.833 6.94 0.00 41.61 4.85
4558 6145 2.440409 TCATCTTTCAAAGAGGCAGGC 58.560 47.619 6.94 0.00 41.61 4.85
4559 6146 2.165167 CATCTTTCAAAGAGGCAGGCA 58.835 47.619 5.94 0.00 41.61 4.75
4560 6147 1.609208 TCTTTCAAAGAGGCAGGCAC 58.391 50.000 0.00 0.00 32.71 5.01
4561 6148 1.133823 TCTTTCAAAGAGGCAGGCACA 60.134 47.619 0.00 0.00 32.71 4.57
4562 6149 1.000938 CTTTCAAAGAGGCAGGCACAC 60.001 52.381 0.00 0.00 0.00 3.82
4563 6150 0.823356 TTCAAAGAGGCAGGCACACC 60.823 55.000 0.00 0.00 0.00 4.16
4564 6151 1.529010 CAAAGAGGCAGGCACACCA 60.529 57.895 0.00 0.00 39.06 4.17
4565 6152 1.228367 AAAGAGGCAGGCACACCAG 60.228 57.895 0.00 0.00 39.06 4.00
4566 6153 1.708993 AAAGAGGCAGGCACACCAGA 61.709 55.000 0.00 0.00 39.06 3.86
4567 6154 2.359230 GAGGCAGGCACACCAGAC 60.359 66.667 0.00 0.00 39.06 3.51
4568 6155 2.851102 AGGCAGGCACACCAGACT 60.851 61.111 0.00 0.00 35.55 3.24
4569 6156 1.536418 AGGCAGGCACACCAGACTA 60.536 57.895 0.00 0.00 39.54 2.59
4570 6157 1.127567 AGGCAGGCACACCAGACTAA 61.128 55.000 0.00 0.00 39.54 2.24
4571 6158 0.674895 GGCAGGCACACCAGACTAAG 60.675 60.000 0.00 0.00 39.06 2.18
4572 6159 0.321671 GCAGGCACACCAGACTAAGA 59.678 55.000 0.00 0.00 39.06 2.10
4573 6160 1.941668 GCAGGCACACCAGACTAAGAC 60.942 57.143 0.00 0.00 39.06 3.01
4574 6161 1.344438 CAGGCACACCAGACTAAGACA 59.656 52.381 0.00 0.00 39.06 3.41
4575 6162 2.027745 CAGGCACACCAGACTAAGACAT 60.028 50.000 0.00 0.00 39.06 3.06
4576 6163 2.027745 AGGCACACCAGACTAAGACATG 60.028 50.000 0.00 0.00 39.06 3.21
4577 6164 2.028112 GGCACACCAGACTAAGACATGA 60.028 50.000 0.00 0.00 35.26 3.07
4578 6165 3.257393 GCACACCAGACTAAGACATGAG 58.743 50.000 0.00 0.00 0.00 2.90
4579 6166 3.257393 CACACCAGACTAAGACATGAGC 58.743 50.000 0.00 0.00 0.00 4.26
4580 6167 2.899900 ACACCAGACTAAGACATGAGCA 59.100 45.455 0.00 0.00 0.00 4.26
4581 6168 3.056250 ACACCAGACTAAGACATGAGCAG 60.056 47.826 0.00 0.00 0.00 4.24
4582 6169 2.093764 ACCAGACTAAGACATGAGCAGC 60.094 50.000 0.00 0.00 0.00 5.25
4583 6170 2.093816 CCAGACTAAGACATGAGCAGCA 60.094 50.000 0.00 0.00 0.00 4.41
4584 6171 3.431905 CCAGACTAAGACATGAGCAGCAT 60.432 47.826 0.00 0.00 37.85 3.79
4585 6172 4.202192 CCAGACTAAGACATGAGCAGCATA 60.202 45.833 0.00 0.00 34.82 3.14
4586 6173 5.511031 CCAGACTAAGACATGAGCAGCATAT 60.511 44.000 0.00 0.00 34.82 1.78
4587 6174 5.405873 CAGACTAAGACATGAGCAGCATATG 59.594 44.000 0.00 0.00 34.82 1.78
4600 6187 1.831343 GCATATGCTTTCCTGCAACG 58.169 50.000 20.64 0.00 46.61 4.10
4601 6188 1.401552 GCATATGCTTTCCTGCAACGA 59.598 47.619 20.64 0.00 46.61 3.85
4602 6189 2.540361 GCATATGCTTTCCTGCAACGAG 60.540 50.000 20.64 0.00 46.61 4.18
4603 6190 1.086696 TATGCTTTCCTGCAACGAGC 58.913 50.000 0.00 0.00 46.61 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 154 1.373812 GTCCACCAACCCTTAGCGT 59.626 57.895 0.00 0.00 0.00 5.07
148 187 6.354130 ACCACTTAGTTAGCTTTGTCTTTGA 58.646 36.000 0.00 0.00 0.00 2.69
278 319 2.025981 AGCATTGGCATGGTTGTCTCTA 60.026 45.455 0.00 0.00 44.61 2.43
290 331 7.767261 ACGTTAATATTTTCTTAGCATTGGCA 58.233 30.769 0.00 0.00 44.61 4.92
328 369 2.771943 ACGGGTTGGAGATATGTGTGAT 59.228 45.455 0.00 0.00 0.00 3.06
369 410 3.879295 CCTTGCATCCACTCATTTATCGT 59.121 43.478 0.00 0.00 0.00 3.73
373 414 2.291475 TGGCCTTGCATCCACTCATTTA 60.291 45.455 3.32 0.00 0.00 1.40
381 422 0.040058 ATGAGTTGGCCTTGCATCCA 59.960 50.000 3.32 0.00 0.00 3.41
386 427 3.278574 TGTATGTATGAGTTGGCCTTGC 58.721 45.455 3.32 0.00 0.00 4.01
472 513 1.724623 CACCAACTCGTAACGACATGG 59.275 52.381 0.00 0.00 40.26 3.66
480 521 0.827089 TCGGGTCCACCAACTCGTAA 60.827 55.000 0.00 0.00 43.62 3.18
483 524 1.019278 CAATCGGGTCCACCAACTCG 61.019 60.000 0.00 0.00 44.55 4.18
498 539 1.881973 TGTCTTTGCCAGCAGACAATC 59.118 47.619 11.10 0.00 38.20 2.67
507 548 2.880890 AGTTTAGCTGTGTCTTTGCCAG 59.119 45.455 0.00 0.00 0.00 4.85
543 587 8.644619 CAGGTATGGTTTATCGTTAATACATCG 58.355 37.037 6.50 0.00 0.00 3.84
595 640 2.037871 CTTGTTTTGTCCCCACCGG 58.962 57.895 0.00 0.00 0.00 5.28
609 654 2.812011 GTTGTTGGTCTTATCCGCTTGT 59.188 45.455 0.00 0.00 0.00 3.16
610 655 3.074412 AGTTGTTGGTCTTATCCGCTTG 58.926 45.455 0.00 0.00 0.00 4.01
611 656 3.244422 TGAGTTGTTGGTCTTATCCGCTT 60.244 43.478 0.00 0.00 0.00 4.68
622 667 4.695455 GTGCTGTATGTATGAGTTGTTGGT 59.305 41.667 0.00 0.00 0.00 3.67
642 687 6.441274 CAATTATGGTCATTGACTATGGTGC 58.559 40.000 21.85 3.51 34.73 5.01
692 737 2.133858 AGGGGTACATATTGGGAGGG 57.866 55.000 0.00 0.00 0.00 4.30
729 774 9.895138 GGTTTCTAGTTAATGACCTACCATTTA 57.105 33.333 0.00 0.00 37.81 1.40
732 777 7.750947 AGGTTTCTAGTTAATGACCTACCAT 57.249 36.000 0.00 0.00 35.84 3.55
733 778 7.563724 AAGGTTTCTAGTTAATGACCTACCA 57.436 36.000 0.00 0.00 36.54 3.25
736 781 9.103582 TGGTTAAGGTTTCTAGTTAATGACCTA 57.896 33.333 0.00 0.00 36.54 3.08
743 788 9.948964 GAGGTTATGGTTAAGGTTTCTAGTTAA 57.051 33.333 0.00 0.00 0.00 2.01
744 789 8.542926 GGAGGTTATGGTTAAGGTTTCTAGTTA 58.457 37.037 0.00 0.00 0.00 2.24
745 790 7.400439 GGAGGTTATGGTTAAGGTTTCTAGTT 58.600 38.462 0.00 0.00 0.00 2.24
747 792 6.069847 TGGGAGGTTATGGTTAAGGTTTCTAG 60.070 42.308 0.00 0.00 0.00 2.43
755 800 5.174037 TCTGTTGGGAGGTTATGGTTAAG 57.826 43.478 0.00 0.00 0.00 1.85
759 804 5.789574 TTTATCTGTTGGGAGGTTATGGT 57.210 39.130 0.00 0.00 0.00 3.55
763 808 5.163077 TGTGGTTTTATCTGTTGGGAGGTTA 60.163 40.000 0.00 0.00 0.00 2.85
771 816 3.363575 CGTCCGTGTGGTTTTATCTGTTG 60.364 47.826 0.00 0.00 36.30 3.33
773 818 2.409975 CGTCCGTGTGGTTTTATCTGT 58.590 47.619 0.00 0.00 36.30 3.41
856 903 0.600782 TTTTAAAGAGGACGCGGCGT 60.601 50.000 29.85 29.85 45.10 5.68
999 1049 3.470888 CTCCGGCCGTCCTCCATT 61.471 66.667 26.12 0.00 0.00 3.16
1257 1311 4.164988 AGAAGTATGAGACAAAGGGGATGG 59.835 45.833 0.00 0.00 0.00 3.51
1299 1355 4.972440 GTCAGAGAAAAACAATCACAGCAC 59.028 41.667 0.00 0.00 0.00 4.40
1303 1359 6.073602 CGAGATGTCAGAGAAAAACAATCACA 60.074 38.462 0.00 0.00 0.00 3.58
1322 1378 2.283298 CCCAAGGATGAACACGAGATG 58.717 52.381 0.00 0.00 0.00 2.90
1337 1393 0.670162 CCAAGTGTCTGCAACCCAAG 59.330 55.000 0.00 0.00 0.00 3.61
1375 1431 1.828768 GCAGATCCAGGTCAGGGAG 59.171 63.158 0.00 0.00 37.96 4.30
1430 1486 4.633126 GGAAACTAGTGACGGGGATAAAAC 59.367 45.833 0.00 0.00 0.00 2.43
1441 1497 6.851330 CGAACATTGAAAAGGAAACTAGTGAC 59.149 38.462 0.00 0.00 42.68 3.67
1446 1502 5.009210 CCACCGAACATTGAAAAGGAAACTA 59.991 40.000 0.00 0.00 42.68 2.24
1480 1558 4.576873 TCGTGCCTTAACAACAAATTCTCA 59.423 37.500 0.00 0.00 0.00 3.27
1503 1581 7.505585 TGTGGTAGTTTCAGATTTTCCAGATTT 59.494 33.333 0.00 0.00 0.00 2.17
1509 1587 4.612939 GCGTGTGGTAGTTTCAGATTTTCC 60.613 45.833 0.00 0.00 0.00 3.13
1530 1608 2.505498 CGCTTACTGGCTACGTGCG 61.505 63.158 0.00 0.00 44.05 5.34
1531 1609 0.734942 TTCGCTTACTGGCTACGTGC 60.735 55.000 0.00 0.00 41.94 5.34
1532 1610 1.852895 GATTCGCTTACTGGCTACGTG 59.147 52.381 0.00 0.00 0.00 4.49
1533 1611 1.749634 AGATTCGCTTACTGGCTACGT 59.250 47.619 0.00 0.00 0.00 3.57
1534 1612 2.120232 CAGATTCGCTTACTGGCTACG 58.880 52.381 0.00 0.00 0.00 3.51
1535 1613 1.861575 GCAGATTCGCTTACTGGCTAC 59.138 52.381 0.00 0.00 33.00 3.58
1536 1614 1.757118 AGCAGATTCGCTTACTGGCTA 59.243 47.619 0.00 0.00 39.99 3.93
1537 1615 0.539051 AGCAGATTCGCTTACTGGCT 59.461 50.000 0.00 0.00 39.99 4.75
1538 1616 0.654683 CAGCAGATTCGCTTACTGGC 59.345 55.000 0.00 0.00 41.38 4.85
1539 1617 2.015736 ACAGCAGATTCGCTTACTGG 57.984 50.000 0.00 0.00 41.38 4.00
1541 1619 4.806247 GTGAATACAGCAGATTCGCTTACT 59.194 41.667 10.04 0.00 41.38 2.24
1542 1620 4.317418 CGTGAATACAGCAGATTCGCTTAC 60.317 45.833 13.51 2.37 41.38 2.34
1543 1621 3.796717 CGTGAATACAGCAGATTCGCTTA 59.203 43.478 13.51 0.29 41.38 3.09
1545 1623 2.196749 CGTGAATACAGCAGATTCGCT 58.803 47.619 13.51 0.00 45.21 4.93
1601 1683 2.140717 GGTAGCCGGGAATAATGAACG 58.859 52.381 2.18 0.00 0.00 3.95
1618 1700 3.420300 TTTAGTGCATCGGGTTTGGTA 57.580 42.857 0.00 0.00 0.00 3.25
1619 1701 2.279935 TTTAGTGCATCGGGTTTGGT 57.720 45.000 0.00 0.00 0.00 3.67
1620 1702 3.574614 CTTTTTAGTGCATCGGGTTTGG 58.425 45.455 0.00 0.00 0.00 3.28
1622 1704 3.492337 TCCTTTTTAGTGCATCGGGTTT 58.508 40.909 0.00 0.00 0.00 3.27
1624 1706 2.871096 TCCTTTTTAGTGCATCGGGT 57.129 45.000 0.00 0.00 0.00 5.28
1675 1767 1.668751 TGGCGAACCGATTAGCAAATC 59.331 47.619 0.00 0.00 38.12 2.17
1808 1904 2.780993 GCGACGATTAATTTGGTGGTG 58.219 47.619 0.00 0.00 0.00 4.17
1809 1905 1.395608 CGCGACGATTAATTTGGTGGT 59.604 47.619 0.00 0.00 0.00 4.16
1810 1906 1.395608 ACGCGACGATTAATTTGGTGG 59.604 47.619 15.93 0.00 0.00 4.61
1824 1920 3.854286 TGAAGAAGAAGAAAACGCGAC 57.146 42.857 15.93 0.65 0.00 5.19
1827 1923 5.990408 TGAAGATGAAGAAGAAGAAAACGC 58.010 37.500 0.00 0.00 0.00 4.84
1833 1929 7.275183 TGACAACTTGAAGATGAAGAAGAAGA 58.725 34.615 9.53 0.00 0.00 2.87
1855 1951 2.859806 GCACAAGACTGGTTGCATTGAC 60.860 50.000 1.18 0.00 0.00 3.18
1857 1953 1.338973 AGCACAAGACTGGTTGCATTG 59.661 47.619 7.03 0.00 0.00 2.82
1858 1954 1.338973 CAGCACAAGACTGGTTGCATT 59.661 47.619 7.03 0.00 0.00 3.56
1859 1955 0.956633 CAGCACAAGACTGGTTGCAT 59.043 50.000 7.03 0.00 0.00 3.96
1861 1957 0.308993 GTCAGCACAAGACTGGTTGC 59.691 55.000 0.00 0.00 35.78 4.17
1913 2009 3.466881 AGGAGCACCTGCACGTTA 58.533 55.556 0.22 0.00 45.92 3.18
2133 2229 2.438434 ATTGAAGGAAGGCGGCCG 60.438 61.111 24.05 24.05 0.00 6.13
2135 2231 1.803289 GACATTGAAGGAAGGCGGC 59.197 57.895 0.00 0.00 0.00 6.53
2195 2295 2.360350 ATGGTTCCCAGCTGCACG 60.360 61.111 8.66 0.00 36.75 5.34
2340 2451 1.585521 CGTCCACGCGGTAGATGAC 60.586 63.158 12.47 6.47 0.00 3.06
2350 2461 4.773117 GTCTCGGTCCGTCCACGC 62.773 72.222 11.88 0.00 38.18 5.34
2651 2780 2.223595 CGTGCAGTGCAGCTATAGTACT 60.224 50.000 20.42 0.00 40.08 2.73
2652 2781 2.120232 CGTGCAGTGCAGCTATAGTAC 58.880 52.381 20.42 1.94 40.08 2.73
2653 2782 1.536072 GCGTGCAGTGCAGCTATAGTA 60.536 52.381 20.42 0.00 40.08 1.82
2687 2816 1.606025 AACGGGTGCATGGCATGAA 60.606 52.632 30.69 18.96 41.91 2.57
2694 2823 0.729116 GTCAGATCAACGGGTGCATG 59.271 55.000 0.00 0.00 0.00 4.06
3207 3355 3.928992 TGCACGAACAGCATTTTGAAAAA 59.071 34.783 0.00 0.00 37.02 1.94
3363 3517 0.460109 TGACGATCGAGTTGCCATGG 60.460 55.000 24.34 7.63 0.00 3.66
3396 3550 1.075536 AGGTTAAAAGTCAGGCCCCAG 59.924 52.381 0.00 0.00 0.00 4.45
3443 3598 1.878069 CGGTGAGCGCGATGATCAA 60.878 57.895 12.10 0.00 46.14 2.57
3568 3723 0.243636 CGTTGGAATTGCCCCTTGTC 59.756 55.000 0.00 0.00 34.97 3.18
3621 3776 1.067821 CGGGCTCTCCTCAAGATGTAC 59.932 57.143 0.00 0.00 32.19 2.90
3645 3800 0.251165 TAGTTTGCAGCCCAAGTCCC 60.251 55.000 0.00 0.00 34.34 4.46
3646 3801 0.881796 GTAGTTTGCAGCCCAAGTCC 59.118 55.000 0.00 0.00 34.34 3.85
3648 3803 1.133792 ACTGTAGTTTGCAGCCCAAGT 60.134 47.619 0.00 0.00 37.47 3.16
3649 3804 1.609208 ACTGTAGTTTGCAGCCCAAG 58.391 50.000 0.00 0.00 37.47 3.61
3650 3805 2.105821 ACTACTGTAGTTTGCAGCCCAA 59.894 45.455 14.53 0.00 34.86 4.12
3651 3806 1.697432 ACTACTGTAGTTTGCAGCCCA 59.303 47.619 14.53 0.00 34.86 5.36
3652 3807 2.474410 ACTACTGTAGTTTGCAGCCC 57.526 50.000 14.53 0.00 34.86 5.19
3653 3808 3.139077 ACAACTACTGTAGTTTGCAGCC 58.861 45.455 26.17 0.00 46.27 4.85
3654 3809 4.511826 AGAACAACTACTGTAGTTTGCAGC 59.488 41.667 26.17 15.43 46.27 5.25
3655 3810 5.986135 AGAGAACAACTACTGTAGTTTGCAG 59.014 40.000 26.17 18.41 46.27 4.41
3656 3811 5.914033 AGAGAACAACTACTGTAGTTTGCA 58.086 37.500 26.17 0.00 46.27 4.08
3657 3812 6.089685 GCTAGAGAACAACTACTGTAGTTTGC 59.910 42.308 26.17 18.52 46.27 3.68
3658 3813 7.371936 AGCTAGAGAACAACTACTGTAGTTTG 58.628 38.462 26.17 22.20 46.27 2.93
3659 3814 7.527568 AGCTAGAGAACAACTACTGTAGTTT 57.472 36.000 26.17 15.68 46.27 2.66
3661 3816 6.316890 GCTAGCTAGAGAACAACTACTGTAGT 59.683 42.308 25.15 14.53 37.23 2.73
3662 3817 6.540914 AGCTAGCTAGAGAACAACTACTGTAG 59.459 42.308 25.15 13.13 37.23 2.74
3663 3818 6.316640 CAGCTAGCTAGAGAACAACTACTGTA 59.683 42.308 25.15 0.00 37.23 2.74
3664 3819 5.124776 CAGCTAGCTAGAGAACAACTACTGT 59.875 44.000 25.15 0.00 41.27 3.55
3665 3820 5.355630 TCAGCTAGCTAGAGAACAACTACTG 59.644 44.000 25.15 16.13 0.00 2.74
3666 3821 5.502079 TCAGCTAGCTAGAGAACAACTACT 58.498 41.667 25.15 4.73 0.00 2.57
3667 3822 5.821516 TCAGCTAGCTAGAGAACAACTAC 57.178 43.478 25.15 2.33 0.00 2.73
3693 3848 5.037385 CGACCTTGGCTCACATATATATCG 58.963 45.833 0.00 0.00 0.00 2.92
3710 3867 5.576447 AATGAAAACAGAAACACGACCTT 57.424 34.783 0.00 0.00 0.00 3.50
3738 3898 1.300481 TGACGAATGAACAAACGGCA 58.700 45.000 7.98 7.98 41.47 5.69
3757 3917 1.341383 CCCAGTCCCAGCTAAAAGCAT 60.341 52.381 1.22 0.00 45.56 3.79
3773 3935 1.897225 CTGCACTCCCAGAGTCCCAG 61.897 65.000 0.00 1.58 41.37 4.45
3774 3936 1.915266 CTGCACTCCCAGAGTCCCA 60.915 63.158 0.00 0.00 41.37 4.37
3775 3937 1.915769 ACTGCACTCCCAGAGTCCC 60.916 63.158 0.00 0.00 41.37 4.46
3776 3938 1.294780 CACTGCACTCCCAGAGTCC 59.705 63.158 0.00 0.00 41.37 3.85
3777 3939 1.294780 CCACTGCACTCCCAGAGTC 59.705 63.158 0.00 0.00 41.37 3.36
3778 3940 0.178932 TACCACTGCACTCCCAGAGT 60.179 55.000 0.00 0.00 44.44 3.24
3779 3941 0.534412 CTACCACTGCACTCCCAGAG 59.466 60.000 0.00 0.00 36.67 3.35
3780 3942 0.114364 TCTACCACTGCACTCCCAGA 59.886 55.000 0.00 0.00 36.67 3.86
3781 3943 0.534412 CTCTACCACTGCACTCCCAG 59.466 60.000 0.00 0.00 38.78 4.45
3782 3944 0.904865 CCTCTACCACTGCACTCCCA 60.905 60.000 0.00 0.00 0.00 4.37
3783 3945 0.614979 TCCTCTACCACTGCACTCCC 60.615 60.000 0.00 0.00 0.00 4.30
3784 3946 0.533032 GTCCTCTACCACTGCACTCC 59.467 60.000 0.00 0.00 0.00 3.85
3785 3947 0.171455 CGTCCTCTACCACTGCACTC 59.829 60.000 0.00 0.00 0.00 3.51
3786 3948 0.251209 TCGTCCTCTACCACTGCACT 60.251 55.000 0.00 0.00 0.00 4.40
3834 3997 3.943671 TTCAAGAGGTTCCCAGAACAA 57.056 42.857 9.50 0.00 0.00 2.83
3861 4024 7.120285 ACAGATTACCAATGTTCATCTCACTTG 59.880 37.037 0.00 0.00 0.00 3.16
3972 4140 1.298157 GCAAGAAATTTTGCCGGGCC 61.298 55.000 17.97 0.00 45.93 5.80
3973 4141 2.161831 GCAAGAAATTTTGCCGGGC 58.838 52.632 13.32 13.32 45.93 6.13
3979 4147 2.845363 AGCTGGGGCAAGAAATTTTG 57.155 45.000 0.00 0.00 41.70 2.44
4004 4172 4.884668 TCTTTTCCCTCGCTTTCTCTAA 57.115 40.909 0.00 0.00 0.00 2.10
4005 4173 4.884668 TTCTTTTCCCTCGCTTTCTCTA 57.115 40.909 0.00 0.00 0.00 2.43
4075 4256 1.133668 ACCTTTTCTTGCAGTCAGCCT 60.134 47.619 0.00 0.00 44.83 4.58
4076 4257 1.268079 GACCTTTTCTTGCAGTCAGCC 59.732 52.381 0.00 0.00 44.83 4.85
4078 4259 4.480386 GAAGACCTTTTCTTGCAGTCAG 57.520 45.455 3.26 0.00 45.24 3.51
4111 4292 1.079621 ACATGGGGGTAGACGGTCA 59.920 57.895 11.27 0.00 0.00 4.02
4121 4302 2.157640 TATTTTCAGGCACATGGGGG 57.842 50.000 0.00 0.00 0.00 5.40
4145 4326 2.738213 AAGTGGCCGAAGCAGAGGTG 62.738 60.000 0.00 0.00 42.56 4.00
4146 4327 2.456287 GAAGTGGCCGAAGCAGAGGT 62.456 60.000 0.00 0.00 42.56 3.85
4148 4329 0.739112 GAGAAGTGGCCGAAGCAGAG 60.739 60.000 0.00 0.00 42.56 3.35
4151 4332 2.347490 GGAGAAGTGGCCGAAGCA 59.653 61.111 0.00 0.00 42.56 3.91
4153 4334 1.078848 CTGGGAGAAGTGGCCGAAG 60.079 63.158 0.00 0.00 0.00 3.79
4154 4335 3.068881 CTGGGAGAAGTGGCCGAA 58.931 61.111 0.00 0.00 0.00 4.30
4155 4336 3.706373 GCTGGGAGAAGTGGCCGA 61.706 66.667 0.00 0.00 0.00 5.54
4157 4338 3.650950 TGGCTGGGAGAAGTGGCC 61.651 66.667 0.00 0.00 42.73 5.36
4159 4340 0.322008 GAAGTGGCTGGGAGAAGTGG 60.322 60.000 0.00 0.00 0.00 4.00
4160 4341 0.397941 TGAAGTGGCTGGGAGAAGTG 59.602 55.000 0.00 0.00 0.00 3.16
4161 4342 0.398318 GTGAAGTGGCTGGGAGAAGT 59.602 55.000 0.00 0.00 0.00 3.01
4164 4345 0.764369 ACAGTGAAGTGGCTGGGAGA 60.764 55.000 0.00 0.00 37.07 3.71
4174 4355 4.505742 GGGGAAGAAGATGAACAGTGAAGT 60.506 45.833 0.00 0.00 0.00 3.01
4180 4361 3.698040 CCATTGGGGAAGAAGATGAACAG 59.302 47.826 0.00 0.00 40.01 3.16
4201 4382 3.311110 TCGGAGGTGGTCTGCACC 61.311 66.667 0.00 0.00 44.10 5.01
4202 4383 2.048127 GTCGGAGGTGGTCTGCAC 60.048 66.667 0.00 0.00 32.95 4.57
4211 4392 2.872250 TTAGGGGTGGGTCGGAGGT 61.872 63.158 0.00 0.00 0.00 3.85
4215 4396 3.777910 CGGTTAGGGGTGGGTCGG 61.778 72.222 0.00 0.00 0.00 4.79
4216 4397 4.462280 GCGGTTAGGGGTGGGTCG 62.462 72.222 0.00 0.00 0.00 4.79
4223 4404 2.908796 GGAGAAGGCGGTTAGGGG 59.091 66.667 0.00 0.00 0.00 4.79
4236 4417 1.109920 GTGCAGAGGATAGCCGGAGA 61.110 60.000 5.05 0.00 39.96 3.71
4244 4706 1.692749 GGTGGGGGTGCAGAGGATA 60.693 63.158 0.00 0.00 0.00 2.59
4261 4723 5.482175 CAGTCCCACTATCTATCTTTAGGGG 59.518 48.000 0.00 0.00 38.52 4.79
4263 4725 5.046950 GGCAGTCCCACTATCTATCTTTAGG 60.047 48.000 0.00 0.00 0.00 2.69
4282 5868 3.289797 TCATCGGAGAAGAGGCAGT 57.710 52.632 0.00 0.00 43.58 4.40
4297 5883 5.344743 TTTCTAGTTCATTCCGAGCTCAT 57.655 39.130 15.40 0.00 36.46 2.90
4298 5884 4.801330 TTTCTAGTTCATTCCGAGCTCA 57.199 40.909 15.40 0.00 36.46 4.26
4299 5885 4.568760 CCTTTTCTAGTTCATTCCGAGCTC 59.431 45.833 2.73 2.73 36.46 4.09
4300 5886 4.020128 ACCTTTTCTAGTTCATTCCGAGCT 60.020 41.667 0.00 0.00 38.87 4.09
4301 5887 4.093556 CACCTTTTCTAGTTCATTCCGAGC 59.906 45.833 0.00 0.00 0.00 5.03
4302 5888 5.348997 GTCACCTTTTCTAGTTCATTCCGAG 59.651 44.000 0.00 0.00 0.00 4.63
4303 5889 5.235516 GTCACCTTTTCTAGTTCATTCCGA 58.764 41.667 0.00 0.00 0.00 4.55
4307 5893 5.465724 GTGTCGTCACCTTTTCTAGTTCATT 59.534 40.000 0.96 0.00 38.51 2.57
4321 5907 3.872560 AATTTTCTTCGTGTCGTCACC 57.127 42.857 7.21 0.00 41.09 4.02
4327 5913 4.441087 GTGCCTGAAAATTTTCTTCGTGTC 59.559 41.667 26.73 12.25 38.02 3.67
4329 5915 3.735746 GGTGCCTGAAAATTTTCTTCGTG 59.264 43.478 26.73 13.94 38.02 4.35
4330 5916 3.243737 GGGTGCCTGAAAATTTTCTTCGT 60.244 43.478 26.73 0.00 38.02 3.85
4347 5934 3.248602 CAGTTTTGCTATATCTCGGGTGC 59.751 47.826 0.00 0.00 0.00 5.01
4376 5963 7.500892 TGTGCAAGGACTATTTTTCTTGTAGAA 59.499 33.333 0.00 0.00 38.90 2.10
4378 5965 7.041098 AGTGTGCAAGGACTATTTTTCTTGTAG 60.041 37.037 0.00 0.00 38.90 2.74
4380 5967 5.594317 AGTGTGCAAGGACTATTTTTCTTGT 59.406 36.000 0.00 0.00 38.90 3.16
4381 5968 5.916883 CAGTGTGCAAGGACTATTTTTCTTG 59.083 40.000 0.00 0.00 39.46 3.02
4382 5969 5.827797 TCAGTGTGCAAGGACTATTTTTCTT 59.172 36.000 0.00 0.00 0.00 2.52
4383 5970 5.376625 TCAGTGTGCAAGGACTATTTTTCT 58.623 37.500 0.00 0.00 0.00 2.52
4384 5971 5.689383 TCAGTGTGCAAGGACTATTTTTC 57.311 39.130 0.00 0.00 0.00 2.29
4385 5972 5.359576 TGTTCAGTGTGCAAGGACTATTTTT 59.640 36.000 0.00 0.00 0.00 1.94
4386 5973 4.887071 TGTTCAGTGTGCAAGGACTATTTT 59.113 37.500 0.00 0.00 0.00 1.82
4387 5974 4.275936 GTGTTCAGTGTGCAAGGACTATTT 59.724 41.667 0.00 0.00 0.00 1.40
4388 5975 3.815401 GTGTTCAGTGTGCAAGGACTATT 59.185 43.478 0.00 0.00 0.00 1.73
4389 5976 3.181455 TGTGTTCAGTGTGCAAGGACTAT 60.181 43.478 0.00 0.00 0.00 2.12
4390 5977 2.169561 TGTGTTCAGTGTGCAAGGACTA 59.830 45.455 0.00 0.00 0.00 2.59
4391 5978 1.065491 TGTGTTCAGTGTGCAAGGACT 60.065 47.619 0.00 0.00 0.00 3.85
4392 5979 1.064060 GTGTGTTCAGTGTGCAAGGAC 59.936 52.381 0.00 0.00 0.00 3.85
4393 5980 1.378531 GTGTGTTCAGTGTGCAAGGA 58.621 50.000 0.00 0.00 0.00 3.36
4394 5981 0.381801 GGTGTGTTCAGTGTGCAAGG 59.618 55.000 0.00 0.00 0.00 3.61
4395 5982 0.381801 GGGTGTGTTCAGTGTGCAAG 59.618 55.000 0.00 0.00 0.00 4.01
4435 6022 3.627577 AGTGTGCAAGGACTACTTTTGTG 59.372 43.478 0.00 0.00 37.29 3.33
4437 6024 3.876914 TCAGTGTGCAAGGACTACTTTTG 59.123 43.478 0.00 0.00 37.29 2.44
4438 6025 4.150897 TCAGTGTGCAAGGACTACTTTT 57.849 40.909 0.00 0.00 37.29 2.27
4439 6026 3.838244 TCAGTGTGCAAGGACTACTTT 57.162 42.857 0.00 0.00 37.29 2.66
4440 6027 3.118408 TGTTCAGTGTGCAAGGACTACTT 60.118 43.478 0.00 0.00 41.00 2.24
4441 6028 2.434336 TGTTCAGTGTGCAAGGACTACT 59.566 45.455 0.00 0.00 0.00 2.57
4442 6029 2.833794 TGTTCAGTGTGCAAGGACTAC 58.166 47.619 0.00 0.00 0.00 2.73
4443 6030 3.070878 TGATGTTCAGTGTGCAAGGACTA 59.929 43.478 0.00 0.00 0.00 2.59
4444 6031 2.158769 TGATGTTCAGTGTGCAAGGACT 60.159 45.455 0.00 0.00 0.00 3.85
4445 6032 2.031682 GTGATGTTCAGTGTGCAAGGAC 60.032 50.000 0.00 0.00 0.00 3.85
4446 6033 2.221169 GTGATGTTCAGTGTGCAAGGA 58.779 47.619 0.00 0.00 0.00 3.36
4447 6034 1.267806 GGTGATGTTCAGTGTGCAAGG 59.732 52.381 0.00 0.00 0.00 3.61
4448 6035 2.224606 AGGTGATGTTCAGTGTGCAAG 58.775 47.619 0.00 0.00 0.00 4.01
4449 6036 2.346766 AGGTGATGTTCAGTGTGCAA 57.653 45.000 0.00 0.00 0.00 4.08
4450 6037 3.337358 CATAGGTGATGTTCAGTGTGCA 58.663 45.455 0.00 0.00 0.00 4.57
4473 6060 5.518848 TCGTCCAGACTACTTTTGTGTAA 57.481 39.130 0.00 0.00 0.00 2.41
4512 6099 3.312828 GACGCTGAGCTCATAAGTATGG 58.687 50.000 18.63 3.76 34.50 2.74
4516 6103 0.101399 CGGACGCTGAGCTCATAAGT 59.899 55.000 18.63 16.85 0.00 2.24
4517 6104 0.101399 ACGGACGCTGAGCTCATAAG 59.899 55.000 18.63 13.69 0.00 1.73
4518 6105 0.530744 AACGGACGCTGAGCTCATAA 59.469 50.000 18.63 0.00 0.00 1.90
4519 6106 0.530744 AAACGGACGCTGAGCTCATA 59.469 50.000 18.63 0.00 0.00 2.15
4520 6107 0.737715 GAAACGGACGCTGAGCTCAT 60.738 55.000 18.63 1.53 0.00 2.90
4521 6108 1.372997 GAAACGGACGCTGAGCTCA 60.373 57.895 17.19 17.19 0.00 4.26
4522 6109 0.737715 ATGAAACGGACGCTGAGCTC 60.738 55.000 6.82 6.82 0.00 4.09
4523 6110 0.737715 GATGAAACGGACGCTGAGCT 60.738 55.000 1.78 0.00 0.00 4.09
4524 6111 0.737715 AGATGAAACGGACGCTGAGC 60.738 55.000 0.00 0.00 0.00 4.26
4525 6112 1.714794 AAGATGAAACGGACGCTGAG 58.285 50.000 0.00 0.00 0.00 3.35
4526 6113 2.066262 GAAAGATGAAACGGACGCTGA 58.934 47.619 0.00 0.00 0.00 4.26
4527 6114 1.798223 TGAAAGATGAAACGGACGCTG 59.202 47.619 0.00 0.00 0.00 5.18
4528 6115 2.163818 TGAAAGATGAAACGGACGCT 57.836 45.000 0.00 0.00 0.00 5.07
4529 6116 2.961522 TTGAAAGATGAAACGGACGC 57.038 45.000 0.00 0.00 0.00 5.19
4530 6117 4.377431 CCTCTTTGAAAGATGAAACGGACG 60.377 45.833 8.23 0.00 36.82 4.79
4531 6118 4.613850 GCCTCTTTGAAAGATGAAACGGAC 60.614 45.833 13.31 2.21 36.82 4.79
4532 6119 3.502211 GCCTCTTTGAAAGATGAAACGGA 59.498 43.478 13.31 0.00 36.82 4.69
4533 6120 3.253188 TGCCTCTTTGAAAGATGAAACGG 59.747 43.478 13.31 8.87 36.82 4.44
4534 6121 4.470462 CTGCCTCTTTGAAAGATGAAACG 58.530 43.478 13.31 0.00 36.82 3.60
4535 6122 4.802999 CCTGCCTCTTTGAAAGATGAAAC 58.197 43.478 13.31 1.34 36.82 2.78
4536 6123 3.256631 GCCTGCCTCTTTGAAAGATGAAA 59.743 43.478 13.31 1.36 36.82 2.69
4537 6124 2.821969 GCCTGCCTCTTTGAAAGATGAA 59.178 45.455 13.31 2.89 36.82 2.57
4538 6125 2.224843 TGCCTGCCTCTTTGAAAGATGA 60.225 45.455 13.31 0.00 36.82 2.92
4539 6126 2.094854 GTGCCTGCCTCTTTGAAAGATG 60.095 50.000 8.23 6.96 36.82 2.90
4540 6127 2.165998 GTGCCTGCCTCTTTGAAAGAT 58.834 47.619 8.23 0.00 36.82 2.40
4541 6128 1.133823 TGTGCCTGCCTCTTTGAAAGA 60.134 47.619 7.49 7.49 35.87 2.52
4542 6129 1.000938 GTGTGCCTGCCTCTTTGAAAG 60.001 52.381 0.00 0.00 0.00 2.62
4543 6130 1.032014 GTGTGCCTGCCTCTTTGAAA 58.968 50.000 0.00 0.00 0.00 2.69
4544 6131 0.823356 GGTGTGCCTGCCTCTTTGAA 60.823 55.000 0.00 0.00 0.00 2.69
4545 6132 1.228245 GGTGTGCCTGCCTCTTTGA 60.228 57.895 0.00 0.00 0.00 2.69
4546 6133 1.521450 CTGGTGTGCCTGCCTCTTTG 61.521 60.000 0.00 0.00 35.27 2.77
4547 6134 1.228367 CTGGTGTGCCTGCCTCTTT 60.228 57.895 0.00 0.00 35.27 2.52
4548 6135 2.149383 TCTGGTGTGCCTGCCTCTT 61.149 57.895 0.00 0.00 34.18 2.85
4549 6136 2.527624 TCTGGTGTGCCTGCCTCT 60.528 61.111 0.00 0.00 34.18 3.69
4550 6137 1.544825 TAGTCTGGTGTGCCTGCCTC 61.545 60.000 0.00 0.00 34.18 4.70
4551 6138 1.127567 TTAGTCTGGTGTGCCTGCCT 61.128 55.000 0.00 0.00 34.18 4.75
4552 6139 0.674895 CTTAGTCTGGTGTGCCTGCC 60.675 60.000 0.00 0.00 34.18 4.85
4553 6140 0.321671 TCTTAGTCTGGTGTGCCTGC 59.678 55.000 0.00 0.00 34.18 4.85
4554 6141 1.344438 TGTCTTAGTCTGGTGTGCCTG 59.656 52.381 0.00 0.00 35.27 4.85
4555 6142 1.717032 TGTCTTAGTCTGGTGTGCCT 58.283 50.000 0.00 0.00 35.27 4.75
4556 6143 2.028112 TCATGTCTTAGTCTGGTGTGCC 60.028 50.000 0.00 0.00 0.00 5.01
4557 6144 3.257393 CTCATGTCTTAGTCTGGTGTGC 58.743 50.000 0.00 0.00 0.00 4.57
4558 6145 3.257393 GCTCATGTCTTAGTCTGGTGTG 58.743 50.000 0.00 0.00 0.00 3.82
4559 6146 2.899900 TGCTCATGTCTTAGTCTGGTGT 59.100 45.455 0.00 0.00 0.00 4.16
4560 6147 3.519579 CTGCTCATGTCTTAGTCTGGTG 58.480 50.000 0.00 0.00 0.00 4.17
4561 6148 2.093764 GCTGCTCATGTCTTAGTCTGGT 60.094 50.000 0.00 0.00 0.00 4.00
4562 6149 2.093816 TGCTGCTCATGTCTTAGTCTGG 60.094 50.000 0.00 0.00 0.00 3.86
4563 6150 3.242549 TGCTGCTCATGTCTTAGTCTG 57.757 47.619 0.00 0.00 0.00 3.51
4564 6151 5.539979 CATATGCTGCTCATGTCTTAGTCT 58.460 41.667 0.00 0.00 36.63 3.24
4565 6152 5.842619 CATATGCTGCTCATGTCTTAGTC 57.157 43.478 0.00 0.00 36.63 2.59
4581 6168 1.401552 TCGTTGCAGGAAAGCATATGC 59.598 47.619 20.36 20.36 45.19 3.14
4582 6169 2.540361 GCTCGTTGCAGGAAAGCATATG 60.540 50.000 0.00 0.00 45.19 1.78
4583 6170 1.672881 GCTCGTTGCAGGAAAGCATAT 59.327 47.619 7.36 0.00 45.19 1.78
4584 6171 1.086696 GCTCGTTGCAGGAAAGCATA 58.913 50.000 7.36 0.00 45.19 3.14
4585 6172 1.878775 GCTCGTTGCAGGAAAGCAT 59.121 52.632 7.36 0.00 45.19 3.79
4586 6173 3.343972 GCTCGTTGCAGGAAAGCA 58.656 55.556 7.36 0.00 43.99 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.