Multiple sequence alignment - TraesCS2D01G505600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G505600 chr2D 100.000 5091 0 0 1 5091 599893195 599898285 0.000000e+00 9402.0
1 TraesCS2D01G505600 chr2D 92.090 177 14 0 1564 1740 97602726 97602902 3.040000e-62 250.0
2 TraesCS2D01G505600 chr2D 92.045 176 14 0 1564 1739 97601380 97601555 1.090000e-61 248.0
3 TraesCS2D01G505600 chr2D 93.548 93 2 3 4134 4225 534925458 534925547 8.890000e-28 135.0
4 TraesCS2D01G505600 chr2D 91.837 98 3 4 4127 4222 75255003 75255097 1.150000e-26 132.0
5 TraesCS2D01G505600 chr2B 91.945 2930 147 34 1903 4792 729525688 729528568 0.000000e+00 4021.0
6 TraesCS2D01G505600 chr2B 86.413 552 43 19 829 1353 729525074 729525620 4.420000e-160 575.0
7 TraesCS2D01G505600 chr2B 83.784 444 25 20 389 800 729524645 729525073 1.340000e-100 377.0
8 TraesCS2D01G505600 chr2B 94.583 240 12 1 4820 5059 729528569 729528807 2.240000e-98 370.0
9 TraesCS2D01G505600 chr2B 90.526 95 9 0 54 148 729524310 729524404 5.350000e-25 126.0
10 TraesCS2D01G505600 chr2B 98.039 51 1 0 320 370 729524521 729524571 7.020000e-14 89.8
11 TraesCS2D01G505600 chr2B 100.000 30 0 0 5062 5091 729528787 729528816 7.120000e-04 56.5
12 TraesCS2D01G505600 chr2A 95.233 881 40 1 3604 4484 733542586 733543464 0.000000e+00 1393.0
13 TraesCS2D01G505600 chr2A 94.560 864 28 1 2761 3605 733541483 733542346 0.000000e+00 1317.0
14 TraesCS2D01G505600 chr2A 86.635 838 38 22 1903 2727 733540706 733541482 0.000000e+00 859.0
15 TraesCS2D01G505600 chr2A 94.652 374 12 1 932 1305 733540263 733540628 1.590000e-159 573.0
16 TraesCS2D01G505600 chr2A 94.565 92 5 0 1 92 733539398 733539489 5.310000e-30 143.0
17 TraesCS2D01G505600 chr2A 94.253 87 1 3 4140 4225 632952994 632952911 4.140000e-26 130.0
18 TraesCS2D01G505600 chr2A 89.796 49 5 0 1742 1790 733540643 733540691 4.260000e-06 63.9
19 TraesCS2D01G505600 chrUn 94.064 219 11 1 1358 1576 362323752 362323536 1.060000e-86 331.0
20 TraesCS2D01G505600 chr6D 94.091 220 10 2 1358 1576 458139541 458139324 1.060000e-86 331.0
21 TraesCS2D01G505600 chr6D 94.064 219 12 1 1358 1576 458140621 458140404 1.060000e-86 331.0
22 TraesCS2D01G505600 chr6D 94.064 219 11 1 1358 1576 458168795 458168579 1.060000e-86 331.0
23 TraesCS2D01G505600 chr6D 94.064 219 11 1 1358 1576 458198271 458198055 1.060000e-86 331.0
24 TraesCS2D01G505600 chr6D 94.064 219 11 1 1358 1576 458221783 458221567 1.060000e-86 331.0
25 TraesCS2D01G505600 chr6D 94.064 219 11 1 1358 1576 458228644 458228428 1.060000e-86 331.0
26 TraesCS2D01G505600 chr6D 94.064 219 11 1 1358 1576 458262636 458262420 1.060000e-86 331.0
27 TraesCS2D01G505600 chr6D 93.607 219 12 1 1358 1576 458292803 458292587 4.920000e-85 326.0
28 TraesCS2D01G505600 chr6B 91.346 208 12 6 1535 1740 142365 142568 3.880000e-71 279.0
29 TraesCS2D01G505600 chr6B 95.506 89 0 3 4138 4225 233032411 233032496 6.870000e-29 139.0
30 TraesCS2D01G505600 chr3D 96.407 167 5 1 1573 1739 66735517 66735352 1.810000e-69 274.0
31 TraesCS2D01G505600 chr3D 88.889 207 14 5 1538 1739 598456388 598456186 3.940000e-61 246.0
32 TraesCS2D01G505600 chr3A 94.318 176 10 0 1564 1739 292046426 292046251 2.340000e-68 270.0
33 TraesCS2D01G505600 chr3A 92.135 178 14 0 1564 1741 735229632 735229455 8.460000e-63 252.0
34 TraesCS2D01G505600 chr3A 97.500 40 1 0 147 186 573976068 573976029 9.150000e-08 69.4
35 TraesCS2D01G505600 chr1D 94.318 176 10 0 1564 1739 416222421 416222246 2.340000e-68 270.0
36 TraesCS2D01G505600 chr4A 93.750 176 10 1 1564 1739 605419859 605419685 3.910000e-66 263.0
37 TraesCS2D01G505600 chr4D 93.617 94 2 3 4141 4233 99662407 99662497 2.470000e-28 137.0
38 TraesCS2D01G505600 chr5D 90.476 105 6 3 4122 4225 310705247 310705348 8.890000e-28 135.0
39 TraesCS2D01G505600 chr5B 92.708 96 2 4 4132 4225 62940417 62940325 3.200000e-27 134.0
40 TraesCS2D01G505600 chr1A 95.455 44 1 1 143 186 373763453 373763495 9.150000e-08 69.4
41 TraesCS2D01G505600 chr5A 100.000 36 0 0 147 182 635404815 635404780 3.290000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G505600 chr2D 599893195 599898285 5090 False 9402.000000 9402 100.000000 1 5091 1 chr2D.!!$F3 5090
1 TraesCS2D01G505600 chr2D 97601380 97602902 1522 False 249.000000 250 92.067500 1564 1740 2 chr2D.!!$F4 176
2 TraesCS2D01G505600 chr2B 729524310 729528816 4506 False 802.185714 4021 92.184286 54 5091 7 chr2B.!!$F1 5037
3 TraesCS2D01G505600 chr2A 733539398 733543464 4066 False 724.816667 1393 92.573500 1 4484 6 chr2A.!!$F1 4483
4 TraesCS2D01G505600 chr6D 458139324 458140621 1297 True 331.000000 331 94.077500 1358 1576 2 chr6D.!!$R7 218

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 1487 0.036105 TCTGTGCCTGCAATGACGAT 60.036 50.0 0.00 0.0 0.00 3.73 F
1845 2599 0.386858 GTACTGACGCAGACGCTCAA 60.387 55.0 12.77 0.0 45.53 3.02 F
1924 2678 0.249868 TTCAGTGTCCTGTTCGGCTG 60.250 55.0 0.00 0.0 39.82 4.85 F
2017 2774 0.532573 GTGATCCTGAGCTGGTTCGA 59.467 55.0 0.00 0.0 0.00 3.71 F
3450 4274 0.248661 CCGTACTGCTCTCATGGACG 60.249 60.0 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1885 2639 0.037697 ACACGGTGAGCTATCGCAAA 60.038 50.000 16.29 0.0 35.97 3.68 R
2983 3767 1.885887 TCGGCCTGAAGTTGGAAAATG 59.114 47.619 0.00 0.0 0.00 2.32 R
3450 4274 2.432444 TGCATGCTTAGTAACACCACC 58.568 47.619 20.33 0.0 0.00 4.61 R
3856 5338 2.680370 GGAGACCCCCTCGGCAAAT 61.680 63.158 0.00 0.0 42.89 2.32 R
4793 6276 0.095245 CTGACAACATACGCGCCAAG 59.905 55.000 5.73 0.0 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 7.869016 TTTCTTAGTTGTCTGTCAGTATTCG 57.131 36.000 0.00 0.00 0.00 3.34
78 79 3.563390 GCATAACAAATCAGAGGAGCCTC 59.437 47.826 8.50 8.50 43.03 4.70
95 96 2.872858 GCCTCGTGTTTCTTCTTCAGTT 59.127 45.455 0.00 0.00 0.00 3.16
97 98 4.084485 GCCTCGTGTTTCTTCTTCAGTTAC 60.084 45.833 0.00 0.00 0.00 2.50
139 140 4.591321 TTTTCCCTATGTCTCCATTGCT 57.409 40.909 0.00 0.00 32.29 3.91
140 141 4.591321 TTTCCCTATGTCTCCATTGCTT 57.409 40.909 0.00 0.00 32.29 3.91
141 142 3.845781 TCCCTATGTCTCCATTGCTTC 57.154 47.619 0.00 0.00 32.29 3.86
142 143 3.387962 TCCCTATGTCTCCATTGCTTCT 58.612 45.455 0.00 0.00 32.29 2.85
143 144 3.135348 TCCCTATGTCTCCATTGCTTCTG 59.865 47.826 0.00 0.00 32.29 3.02
144 145 3.118112 CCCTATGTCTCCATTGCTTCTGT 60.118 47.826 0.00 0.00 32.29 3.41
145 146 4.125703 CCTATGTCTCCATTGCTTCTGTC 58.874 47.826 0.00 0.00 32.29 3.51
146 147 3.996921 ATGTCTCCATTGCTTCTGTCT 57.003 42.857 0.00 0.00 0.00 3.41
147 148 3.777106 TGTCTCCATTGCTTCTGTCTT 57.223 42.857 0.00 0.00 0.00 3.01
148 149 4.090761 TGTCTCCATTGCTTCTGTCTTT 57.909 40.909 0.00 0.00 0.00 2.52
149 150 4.464008 TGTCTCCATTGCTTCTGTCTTTT 58.536 39.130 0.00 0.00 0.00 2.27
150 151 4.889409 TGTCTCCATTGCTTCTGTCTTTTT 59.111 37.500 0.00 0.00 0.00 1.94
151 152 5.218139 GTCTCCATTGCTTCTGTCTTTTTG 58.782 41.667 0.00 0.00 0.00 2.44
152 153 5.009010 GTCTCCATTGCTTCTGTCTTTTTGA 59.991 40.000 0.00 0.00 0.00 2.69
153 154 5.593909 TCTCCATTGCTTCTGTCTTTTTGAA 59.406 36.000 0.00 0.00 0.00 2.69
154 155 6.266103 TCTCCATTGCTTCTGTCTTTTTGAAT 59.734 34.615 0.00 0.00 0.00 2.57
155 156 6.819284 TCCATTGCTTCTGTCTTTTTGAATT 58.181 32.000 0.00 0.00 0.00 2.17
156 157 7.274447 TCCATTGCTTCTGTCTTTTTGAATTT 58.726 30.769 0.00 0.00 0.00 1.82
157 158 7.769970 TCCATTGCTTCTGTCTTTTTGAATTTT 59.230 29.630 0.00 0.00 0.00 1.82
158 159 8.400186 CCATTGCTTCTGTCTTTTTGAATTTTT 58.600 29.630 0.00 0.00 0.00 1.94
179 180 6.892658 TTTTAGATTGCTTACCACATGTGT 57.107 33.333 23.79 14.29 0.00 3.72
180 181 6.494893 TTTAGATTGCTTACCACATGTGTC 57.505 37.500 23.79 12.17 0.00 3.67
181 182 4.019792 AGATTGCTTACCACATGTGTCA 57.980 40.909 23.79 8.71 0.00 3.58
182 183 4.592942 AGATTGCTTACCACATGTGTCAT 58.407 39.130 23.79 11.74 0.00 3.06
183 184 4.397103 AGATTGCTTACCACATGTGTCATG 59.603 41.667 23.79 11.29 0.00 3.07
184 185 3.138884 TGCTTACCACATGTGTCATGT 57.861 42.857 23.79 16.29 0.00 3.21
185 186 2.813172 TGCTTACCACATGTGTCATGTG 59.187 45.455 26.20 26.20 46.49 3.21
186 187 2.813754 GCTTACCACATGTGTCATGTGT 59.186 45.455 28.73 21.89 45.74 3.72
187 188 3.253188 GCTTACCACATGTGTCATGTGTT 59.747 43.478 28.73 22.32 45.74 3.32
188 189 4.454161 GCTTACCACATGTGTCATGTGTTA 59.546 41.667 28.73 21.53 45.74 2.41
189 190 5.123820 GCTTACCACATGTGTCATGTGTTAT 59.876 40.000 28.73 20.35 45.74 1.89
190 191 6.675486 GCTTACCACATGTGTCATGTGTTATC 60.675 42.308 28.73 16.60 45.74 1.75
191 192 4.910195 ACCACATGTGTCATGTGTTATCT 58.090 39.130 28.73 12.08 45.74 1.98
192 193 4.937620 ACCACATGTGTCATGTGTTATCTC 59.062 41.667 28.73 0.00 45.74 2.75
193 194 4.333649 CCACATGTGTCATGTGTTATCTCC 59.666 45.833 28.73 0.00 45.74 3.71
194 195 4.937015 CACATGTGTCATGTGTTATCTCCA 59.063 41.667 25.35 0.00 43.11 3.86
195 196 5.587443 CACATGTGTCATGTGTTATCTCCAT 59.413 40.000 25.35 0.00 43.11 3.41
196 197 6.094464 CACATGTGTCATGTGTTATCTCCATT 59.906 38.462 25.35 0.00 43.11 3.16
197 198 6.094464 ACATGTGTCATGTGTTATCTCCATTG 59.906 38.462 13.47 0.00 0.00 2.82
198 199 4.395854 TGTGTCATGTGTTATCTCCATTGC 59.604 41.667 0.00 0.00 0.00 3.56
199 200 4.637534 GTGTCATGTGTTATCTCCATTGCT 59.362 41.667 0.00 0.00 0.00 3.91
214 215 3.635373 CCATTGCTTCTGCCTTGATACAT 59.365 43.478 0.00 0.00 38.71 2.29
238 239 9.722184 CATATGAGATGAGGTTTGATCTATGTT 57.278 33.333 0.00 0.00 0.00 2.71
241 242 7.855375 TGAGATGAGGTTTGATCTATGTTCTT 58.145 34.615 0.00 0.00 0.00 2.52
242 243 7.984050 TGAGATGAGGTTTGATCTATGTTCTTC 59.016 37.037 0.00 0.00 0.00 2.87
245 246 7.009179 TGAGGTTTGATCTATGTTCTTCAGT 57.991 36.000 0.00 0.00 0.00 3.41
246 247 8.134202 TGAGGTTTGATCTATGTTCTTCAGTA 57.866 34.615 0.00 0.00 0.00 2.74
247 248 8.593679 TGAGGTTTGATCTATGTTCTTCAGTAA 58.406 33.333 0.00 0.00 0.00 2.24
249 250 8.598041 AGGTTTGATCTATGTTCTTCAGTAACT 58.402 33.333 0.00 0.00 0.00 2.24
250 251 9.220767 GGTTTGATCTATGTTCTTCAGTAACTT 57.779 33.333 0.00 0.00 0.00 2.66
302 880 7.027161 CAGTTATTTAGTCCCAATCAAAACCG 58.973 38.462 0.00 0.00 0.00 4.44
305 883 1.211709 GTCCCAATCAAAACCGCGG 59.788 57.895 26.86 26.86 0.00 6.46
307 885 2.272447 CCCAATCAAAACCGCGGGT 61.272 57.895 31.76 23.68 37.65 5.28
308 886 1.211709 CCAATCAAAACCGCGGGTC 59.788 57.895 31.76 0.00 33.12 4.46
309 887 1.241315 CCAATCAAAACCGCGGGTCT 61.241 55.000 31.76 6.66 33.12 3.85
310 888 1.444836 CAATCAAAACCGCGGGTCTA 58.555 50.000 31.76 12.72 33.12 2.59
311 889 1.396996 CAATCAAAACCGCGGGTCTAG 59.603 52.381 31.76 16.66 33.12 2.43
312 890 0.107848 ATCAAAACCGCGGGTCTAGG 60.108 55.000 31.76 13.55 33.12 3.02
364 958 0.243095 GGCTTCTCGTACTGGTTCGT 59.757 55.000 0.00 0.00 0.00 3.85
390 1016 1.378646 CCGGCCTTTCCTTTCCCTC 60.379 63.158 0.00 0.00 0.00 4.30
391 1017 1.378646 CGGCCTTTCCTTTCCCTCC 60.379 63.158 0.00 0.00 0.00 4.30
397 1046 2.239907 CCTTTCCTTTCCCTCCGATTCT 59.760 50.000 0.00 0.00 0.00 2.40
398 1047 3.274288 CTTTCCTTTCCCTCCGATTCTG 58.726 50.000 0.00 0.00 0.00 3.02
498 1151 2.948840 ATACGAGGTACGCAAGCGCC 62.949 60.000 15.09 8.66 46.94 6.53
523 1176 3.193691 CCTGATACTCCCCATGTCGTATC 59.806 52.174 11.12 11.12 38.94 2.24
590 1243 1.301479 GAAAGTCCTTGGCCGACGT 60.301 57.895 0.00 0.00 35.33 4.34
594 1247 1.217244 GTCCTTGGCCGACGTATGT 59.783 57.895 0.00 0.00 0.00 2.29
595 1248 0.804933 GTCCTTGGCCGACGTATGTC 60.805 60.000 4.90 4.90 41.91 3.06
639 1292 5.057149 AGTTAATCCATGGCTAATGACGTC 58.943 41.667 9.11 9.11 38.72 4.34
643 1296 1.138859 CCATGGCTAATGACGTCTCCA 59.861 52.381 17.92 15.09 38.72 3.86
671 1327 0.402504 TAATGGGTCTGCGGTTGGTT 59.597 50.000 0.00 0.00 0.00 3.67
672 1328 1.178534 AATGGGTCTGCGGTTGGTTG 61.179 55.000 0.00 0.00 0.00 3.77
675 1331 4.025401 GTCTGCGGTTGGTTGGCG 62.025 66.667 0.00 0.00 0.00 5.69
676 1332 4.243008 TCTGCGGTTGGTTGGCGA 62.243 61.111 0.00 0.00 0.00 5.54
677 1333 3.726517 CTGCGGTTGGTTGGCGAG 61.727 66.667 0.00 0.00 0.00 5.03
678 1334 4.555709 TGCGGTTGGTTGGCGAGT 62.556 61.111 0.00 0.00 0.00 4.18
680 1336 2.841160 GCGGTTGGTTGGCGAGTTT 61.841 57.895 0.00 0.00 0.00 2.66
681 1337 1.508808 GCGGTTGGTTGGCGAGTTTA 61.509 55.000 0.00 0.00 0.00 2.01
683 1339 2.348660 CGGTTGGTTGGCGAGTTTATA 58.651 47.619 0.00 0.00 0.00 0.98
684 1340 2.350498 CGGTTGGTTGGCGAGTTTATAG 59.650 50.000 0.00 0.00 0.00 1.31
686 1342 3.126343 GGTTGGTTGGCGAGTTTATAGTG 59.874 47.826 0.00 0.00 0.00 2.74
688 1344 2.027561 TGGTTGGCGAGTTTATAGTGCT 60.028 45.455 0.00 0.00 0.00 4.40
689 1345 2.608090 GGTTGGCGAGTTTATAGTGCTC 59.392 50.000 0.00 0.00 0.00 4.26
690 1346 3.522553 GTTGGCGAGTTTATAGTGCTCT 58.477 45.455 0.00 0.00 0.00 4.09
691 1347 4.441079 GGTTGGCGAGTTTATAGTGCTCTA 60.441 45.833 0.00 0.00 0.00 2.43
694 1372 4.827835 TGGCGAGTTTATAGTGCTCTATCT 59.172 41.667 11.44 3.73 37.89 1.98
696 1374 6.659668 TGGCGAGTTTATAGTGCTCTATCTAT 59.340 38.462 11.44 2.34 37.89 1.98
701 1379 9.134734 GAGTTTATAGTGCTCTATCTATTGTGC 57.865 37.037 11.44 0.00 37.89 4.57
714 1392 8.305317 TCTATCTATTGTGCTGATCTTGAGATG 58.695 37.037 0.00 0.00 34.37 2.90
715 1393 6.475596 TCTATTGTGCTGATCTTGAGATGA 57.524 37.500 0.00 0.00 34.37 2.92
717 1395 4.813750 TTGTGCTGATCTTGAGATGAGA 57.186 40.909 11.00 0.00 37.89 3.27
721 1399 5.999600 TGTGCTGATCTTGAGATGAGAAAAA 59.000 36.000 11.00 0.00 37.89 1.94
723 1401 5.646793 TGCTGATCTTGAGATGAGAAAAAGG 59.353 40.000 11.00 0.00 37.89 3.11
724 1402 5.879223 GCTGATCTTGAGATGAGAAAAAGGA 59.121 40.000 11.00 0.00 37.89 3.36
725 1403 6.543100 GCTGATCTTGAGATGAGAAAAAGGAT 59.457 38.462 11.00 0.00 37.89 3.24
726 1404 7.254863 GCTGATCTTGAGATGAGAAAAAGGATC 60.255 40.741 11.00 0.00 37.89 3.36
727 1405 7.627311 TGATCTTGAGATGAGAAAAAGGATCA 58.373 34.615 0.00 0.00 34.37 2.92
728 1406 7.551974 TGATCTTGAGATGAGAAAAAGGATCAC 59.448 37.037 0.00 0.00 34.37 3.06
730 1408 7.102346 TCTTGAGATGAGAAAAAGGATCACTC 58.898 38.462 0.00 0.00 0.00 3.51
731 1409 6.364568 TGAGATGAGAAAAAGGATCACTCA 57.635 37.500 0.00 0.00 40.88 3.41
732 1410 6.404708 TGAGATGAGAAAAAGGATCACTCAG 58.595 40.000 0.00 0.00 40.17 3.35
733 1411 6.212187 TGAGATGAGAAAAAGGATCACTCAGA 59.788 38.462 0.00 0.00 40.17 3.27
734 1412 7.013823 AGATGAGAAAAAGGATCACTCAGAA 57.986 36.000 0.00 0.00 40.17 3.02
735 1413 7.456725 AGATGAGAAAAAGGATCACTCAGAAA 58.543 34.615 0.00 0.00 40.17 2.52
736 1414 8.108364 AGATGAGAAAAAGGATCACTCAGAAAT 58.892 33.333 0.00 0.00 40.17 2.17
737 1415 9.388506 GATGAGAAAAAGGATCACTCAGAAATA 57.611 33.333 0.00 0.00 40.17 1.40
738 1416 8.783833 TGAGAAAAAGGATCACTCAGAAATAG 57.216 34.615 0.00 0.00 33.57 1.73
739 1417 8.378565 TGAGAAAAAGGATCACTCAGAAATAGT 58.621 33.333 0.00 0.00 33.57 2.12
740 1418 9.877178 GAGAAAAAGGATCACTCAGAAATAGTA 57.123 33.333 0.00 0.00 0.00 1.82
741 1419 9.883142 AGAAAAAGGATCACTCAGAAATAGTAG 57.117 33.333 0.00 0.00 0.00 2.57
742 1420 9.877178 GAAAAAGGATCACTCAGAAATAGTAGA 57.123 33.333 0.00 0.00 0.00 2.59
781 1462 4.686091 TCGTTCGGATATGCATGAAAGATC 59.314 41.667 10.16 3.51 0.00 2.75
800 1481 1.074405 TCTCCTTTCTGTGCCTGCAAT 59.926 47.619 0.00 0.00 0.00 3.56
801 1482 1.201647 CTCCTTTCTGTGCCTGCAATG 59.798 52.381 0.00 0.00 0.00 2.82
802 1483 1.202915 TCCTTTCTGTGCCTGCAATGA 60.203 47.619 0.00 0.00 0.00 2.57
803 1484 1.068055 CCTTTCTGTGCCTGCAATGAC 60.068 52.381 0.00 0.00 0.00 3.06
804 1485 0.592637 TTTCTGTGCCTGCAATGACG 59.407 50.000 0.00 0.00 0.00 4.35
805 1486 0.250252 TTCTGTGCCTGCAATGACGA 60.250 50.000 0.00 0.00 0.00 4.20
806 1487 0.036105 TCTGTGCCTGCAATGACGAT 60.036 50.000 0.00 0.00 0.00 3.73
807 1488 0.806868 CTGTGCCTGCAATGACGATT 59.193 50.000 0.00 0.00 0.00 3.34
808 1489 0.804364 TGTGCCTGCAATGACGATTC 59.196 50.000 0.00 0.00 0.00 2.52
809 1490 1.089920 GTGCCTGCAATGACGATTCT 58.910 50.000 0.00 0.00 0.00 2.40
810 1491 1.470098 GTGCCTGCAATGACGATTCTT 59.530 47.619 0.00 0.00 0.00 2.52
811 1492 1.739466 TGCCTGCAATGACGATTCTTC 59.261 47.619 0.00 0.00 0.00 2.87
812 1493 1.064654 GCCTGCAATGACGATTCTTCC 59.935 52.381 0.00 0.00 0.00 3.46
813 1494 2.358957 CCTGCAATGACGATTCTTCCA 58.641 47.619 0.00 0.00 0.00 3.53
814 1495 2.096496 CCTGCAATGACGATTCTTCCAC 59.904 50.000 0.00 0.00 0.00 4.02
815 1496 2.083774 TGCAATGACGATTCTTCCACC 58.916 47.619 0.00 0.00 0.00 4.61
816 1497 1.401905 GCAATGACGATTCTTCCACCC 59.598 52.381 0.00 0.00 0.00 4.61
817 1498 2.710377 CAATGACGATTCTTCCACCCA 58.290 47.619 0.00 0.00 0.00 4.51
818 1499 3.282021 CAATGACGATTCTTCCACCCAT 58.718 45.455 0.00 0.00 0.00 4.00
819 1500 2.691409 TGACGATTCTTCCACCCATC 57.309 50.000 0.00 0.00 0.00 3.51
820 1501 1.905894 TGACGATTCTTCCACCCATCA 59.094 47.619 0.00 0.00 0.00 3.07
821 1502 2.304470 TGACGATTCTTCCACCCATCAA 59.696 45.455 0.00 0.00 0.00 2.57
822 1503 2.678336 GACGATTCTTCCACCCATCAAC 59.322 50.000 0.00 0.00 0.00 3.18
823 1504 1.665679 CGATTCTTCCACCCATCAACG 59.334 52.381 0.00 0.00 0.00 4.10
824 1505 1.401905 GATTCTTCCACCCATCAACGC 59.598 52.381 0.00 0.00 0.00 4.84
825 1506 0.608035 TTCTTCCACCCATCAACGCC 60.608 55.000 0.00 0.00 0.00 5.68
826 1507 1.002134 CTTCCACCCATCAACGCCT 60.002 57.895 0.00 0.00 0.00 5.52
827 1508 1.303236 TTCCACCCATCAACGCCTG 60.303 57.895 0.00 0.00 0.00 4.85
930 1614 7.179076 TGGATGGTCATCATGACTATATCTG 57.821 40.000 16.10 0.00 46.46 2.90
962 1678 5.755375 TGTCTTCAGTCTGACATTCACTTTC 59.245 40.000 10.88 0.00 38.15 2.62
963 1679 5.755375 GTCTTCAGTCTGACATTCACTTTCA 59.245 40.000 10.88 0.00 33.75 2.69
964 1680 5.987953 TCTTCAGTCTGACATTCACTTTCAG 59.012 40.000 10.88 0.00 38.52 3.02
965 1681 4.635223 TCAGTCTGACATTCACTTTCAGG 58.365 43.478 10.88 0.00 37.86 3.86
966 1682 3.750130 CAGTCTGACATTCACTTTCAGGG 59.250 47.826 10.88 0.00 37.86 4.45
967 1683 3.648067 AGTCTGACATTCACTTTCAGGGA 59.352 43.478 10.88 0.00 37.86 4.20
968 1684 3.748568 GTCTGACATTCACTTTCAGGGAC 59.251 47.826 2.24 0.00 37.86 4.46
969 1685 3.077359 CTGACATTCACTTTCAGGGACC 58.923 50.000 0.00 0.00 34.31 4.46
973 1689 1.420430 TTCACTTTCAGGGACCGAGT 58.580 50.000 0.00 0.00 0.00 4.18
1306 2026 0.822164 GGAGCACGGTATGTACCACT 59.178 55.000 9.69 3.57 46.80 4.00
1307 2027 2.026641 GGAGCACGGTATGTACCACTA 58.973 52.381 9.69 0.00 46.80 2.74
1312 2033 3.367703 GCACGGTATGTACCACTACAACT 60.368 47.826 9.69 0.00 46.80 3.16
1319 2040 1.189524 TACCACTACAACTGCCGCCT 61.190 55.000 0.00 0.00 0.00 5.52
1330 2051 3.518003 GCCGCCTGCATGATTTCT 58.482 55.556 0.00 0.00 40.77 2.52
1338 2059 3.884091 GCCTGCATGATTTCTTCAGATCT 59.116 43.478 0.00 0.00 37.89 2.75
1342 2063 6.238511 CCTGCATGATTTCTTCAGATCTCAAG 60.239 42.308 0.00 0.00 37.89 3.02
1345 2066 7.279536 TGCATGATTTCTTCAGATCTCAAGTAC 59.720 37.037 6.23 0.00 37.89 2.73
1353 2074 7.374272 TCTTCAGATCTCAAGTACAAGAACTG 58.626 38.462 6.23 17.00 41.32 3.16
1354 2075 6.656632 TCAGATCTCAAGTACAAGAACTGT 57.343 37.500 19.86 0.00 40.98 3.55
1355 2076 6.682746 TCAGATCTCAAGTACAAGAACTGTC 58.317 40.000 19.86 6.62 40.98 3.51
1356 2077 6.265422 TCAGATCTCAAGTACAAGAACTGTCA 59.735 38.462 19.86 7.93 40.98 3.58
1432 2153 3.004419 GCCCAAACGCCTCCTTTATATTC 59.996 47.826 0.00 0.00 0.00 1.75
1474 2195 2.288025 GGGAGCTACACCCGGAACA 61.288 63.158 0.73 0.00 37.85 3.18
1498 2219 9.855021 ACAAAGTGATTACATGGCTTTTTATAC 57.145 29.630 0.00 0.00 0.00 1.47
1503 2224 6.892456 TGATTACATGGCTTTTTATACCCACA 59.108 34.615 0.00 0.00 0.00 4.17
1504 2225 7.397476 TGATTACATGGCTTTTTATACCCACAA 59.603 33.333 0.00 0.00 0.00 3.33
1511 2232 4.437794 GCTTTTTATACCCACAACGCCTAC 60.438 45.833 0.00 0.00 0.00 3.18
1629 2375 4.801147 ACATGCATGCAACTAGATAACG 57.199 40.909 26.68 5.60 0.00 3.18
1647 2393 1.831106 ACGACCTTATCCATGCACTCA 59.169 47.619 0.00 0.00 0.00 3.41
1654 2400 4.521146 CTTATCCATGCACTCAAGGACTT 58.479 43.478 0.00 0.00 42.21 3.01
1667 2413 2.431683 GACTTGGCAGCTCCACCA 59.568 61.111 4.59 0.20 46.55 4.17
1721 2467 1.081242 CCAACAGAACCATGCACGC 60.081 57.895 0.00 0.00 0.00 5.34
1739 2485 3.435327 CACGCCAAGATTAGTGCTAACAA 59.565 43.478 0.00 0.00 0.00 2.83
1740 2486 3.684788 ACGCCAAGATTAGTGCTAACAAG 59.315 43.478 0.00 0.00 0.00 3.16
1741 2487 3.932710 CGCCAAGATTAGTGCTAACAAGA 59.067 43.478 0.00 0.00 0.00 3.02
1742 2488 4.391830 CGCCAAGATTAGTGCTAACAAGAA 59.608 41.667 0.00 0.00 0.00 2.52
1744 2490 5.392057 GCCAAGATTAGTGCTAACAAGAACC 60.392 44.000 0.00 0.00 0.00 3.62
1752 2498 4.452455 AGTGCTAACAAGAACCATCTTTCG 59.548 41.667 0.00 0.00 43.43 3.46
1759 2505 5.607477 ACAAGAACCATCTTTCGTAGTTGA 58.393 37.500 0.00 0.00 43.43 3.18
1793 2547 6.830324 TCTGATGTAGAAATGCCATTAGCTTT 59.170 34.615 0.00 0.00 40.37 3.51
1794 2548 7.012704 TCTGATGTAGAAATGCCATTAGCTTTC 59.987 37.037 0.00 0.00 37.85 2.62
1795 2549 6.602803 TGATGTAGAAATGCCATTAGCTTTCA 59.397 34.615 0.00 0.00 44.23 2.69
1796 2550 6.194796 TGTAGAAATGCCATTAGCTTTCAC 57.805 37.500 0.00 0.00 44.23 3.18
1797 2551 5.945784 TGTAGAAATGCCATTAGCTTTCACT 59.054 36.000 0.00 0.00 44.23 3.41
1798 2552 5.573337 AGAAATGCCATTAGCTTTCACTC 57.427 39.130 0.00 0.00 44.23 3.51
1801 2555 4.978083 ATGCCATTAGCTTTCACTCTTG 57.022 40.909 0.00 0.00 44.23 3.02
1804 2558 4.584325 TGCCATTAGCTTTCACTCTTGTTT 59.416 37.500 0.00 0.00 44.23 2.83
1806 2560 6.264292 TGCCATTAGCTTTCACTCTTGTTTTA 59.736 34.615 0.00 0.00 44.23 1.52
1807 2561 7.039784 TGCCATTAGCTTTCACTCTTGTTTTAT 60.040 33.333 0.00 0.00 44.23 1.40
1808 2562 7.814587 GCCATTAGCTTTCACTCTTGTTTTATT 59.185 33.333 0.00 0.00 38.99 1.40
1809 2563 9.696917 CCATTAGCTTTCACTCTTGTTTTATTT 57.303 29.630 0.00 0.00 0.00 1.40
1834 2588 7.633361 ATTTTAACACTGTACAGTACTGACG 57.367 36.000 29.30 16.41 40.20 4.35
1836 2590 1.951602 ACACTGTACAGTACTGACGCA 59.048 47.619 29.30 20.32 40.20 5.24
1842 2596 1.210413 CAGTACTGACGCAGACGCT 59.790 57.895 18.45 5.66 45.53 5.07
1844 2598 1.209383 GTACTGACGCAGACGCTCA 59.791 57.895 12.77 0.00 45.53 4.26
1845 2599 0.386858 GTACTGACGCAGACGCTCAA 60.387 55.000 12.77 0.00 45.53 3.02
1848 2602 1.215014 CTGACGCAGACGCTCAAACA 61.215 55.000 1.18 0.00 45.53 2.83
1851 2605 1.927174 GACGCAGACGCTCAAACATAT 59.073 47.619 0.00 0.00 45.53 1.78
1852 2606 1.660607 ACGCAGACGCTCAAACATATG 59.339 47.619 0.00 0.00 45.53 1.78
1854 2608 1.398041 GCAGACGCTCAAACATATGCA 59.602 47.619 1.58 0.00 34.30 3.96
1856 2610 2.416202 CAGACGCTCAAACATATGCACA 59.584 45.455 1.58 0.00 0.00 4.57
1858 2612 4.270808 CAGACGCTCAAACATATGCACATA 59.729 41.667 1.58 0.00 0.00 2.29
1861 2615 4.201812 ACGCTCAAACATATGCACATACAC 60.202 41.667 1.58 0.00 0.00 2.90
1862 2616 4.034394 CGCTCAAACATATGCACATACACT 59.966 41.667 1.58 0.00 0.00 3.55
1863 2617 5.447683 CGCTCAAACATATGCACATACACTT 60.448 40.000 1.58 0.00 0.00 3.16
1864 2618 6.324819 GCTCAAACATATGCACATACACTTT 58.675 36.000 1.58 0.00 0.00 2.66
1865 2619 6.808212 GCTCAAACATATGCACATACACTTTT 59.192 34.615 1.58 0.00 0.00 2.27
1867 2621 7.656412 TCAAACATATGCACATACACTTTTGT 58.344 30.769 1.58 0.00 40.02 2.83
1868 2622 8.140628 TCAAACATATGCACATACACTTTTGTT 58.859 29.630 1.58 0.00 37.15 2.83
1869 2623 8.763356 CAAACATATGCACATACACTTTTGTTT 58.237 29.630 1.58 10.05 37.15 2.83
1870 2624 8.885494 AACATATGCACATACACTTTTGTTTT 57.115 26.923 1.58 0.00 37.15 2.43
1872 2626 9.973450 ACATATGCACATACACTTTTGTTTTTA 57.027 25.926 1.58 0.00 37.15 1.52
1876 2630 8.709386 TGCACATACACTTTTGTTTTTATTGT 57.291 26.923 0.00 0.00 37.15 2.71
1877 2631 9.155975 TGCACATACACTTTTGTTTTTATTGTT 57.844 25.926 0.00 0.00 37.15 2.83
1878 2632 9.631639 GCACATACACTTTTGTTTTTATTGTTC 57.368 29.630 0.00 0.00 37.15 3.18
1914 2668 1.217882 CTCACCGTGTTTCAGTGTCC 58.782 55.000 0.00 0.00 33.21 4.02
1924 2678 0.249868 TTCAGTGTCCTGTTCGGCTG 60.250 55.000 0.00 0.00 39.82 4.85
1932 2686 3.512329 TGTCCTGTTCGGCTGTTCTTATA 59.488 43.478 0.00 0.00 0.00 0.98
1946 2703 6.249260 GCTGTTCTTATATGTTGCTGAAAACG 59.751 38.462 0.00 0.00 32.47 3.60
1963 2720 1.247567 ACGCAGGGAAGGTTTCATTG 58.752 50.000 0.00 0.00 0.00 2.82
2017 2774 0.532573 GTGATCCTGAGCTGGTTCGA 59.467 55.000 0.00 0.00 0.00 3.71
2101 2858 3.965379 TTTATTGGTGGACTCGCAGTA 57.035 42.857 0.00 0.00 0.00 2.74
2131 2888 3.131046 GTGAAGAATGGGCCAAACATAGG 59.869 47.826 11.89 0.00 0.00 2.57
2137 2894 1.494721 TGGGCCAAACATAGGAGGATC 59.505 52.381 2.13 0.00 0.00 3.36
2180 2937 8.718102 TGCAGAAAAGCTAAAGGTAATAGTAG 57.282 34.615 0.00 0.00 34.99 2.57
2182 2939 9.813446 GCAGAAAAGCTAAAGGTAATAGTAGTA 57.187 33.333 0.00 0.00 0.00 1.82
2210 2967 7.793927 ACTTCTGTCTCAAAAGAAAAGTAGG 57.206 36.000 0.00 0.00 32.23 3.18
2317 3086 2.604914 CACAGTGTGATTCGTATCCAGC 59.395 50.000 18.83 0.00 35.23 4.85
2396 3165 9.268268 GATATAAATTCGGTGTCAAATCTGGTA 57.732 33.333 0.00 0.00 0.00 3.25
2398 3167 4.819105 ATTCGGTGTCAAATCTGGTAGA 57.181 40.909 0.00 0.00 0.00 2.59
2399 3168 4.819105 TTCGGTGTCAAATCTGGTAGAT 57.181 40.909 0.00 0.00 36.28 1.98
2400 3169 5.925506 TTCGGTGTCAAATCTGGTAGATA 57.074 39.130 0.00 0.00 32.89 1.98
2401 3170 6.479972 TTCGGTGTCAAATCTGGTAGATAT 57.520 37.500 0.00 0.00 32.89 1.63
2402 3171 7.591421 TTCGGTGTCAAATCTGGTAGATATA 57.409 36.000 0.00 0.00 32.89 0.86
2403 3172 7.591421 TCGGTGTCAAATCTGGTAGATATAA 57.409 36.000 0.00 0.00 32.89 0.98
2517 3286 6.495181 ACAGCTGGCTCTATATGTAACTGTAT 59.505 38.462 19.93 0.00 33.20 2.29
2674 3448 5.597182 AGACATCCGAGGCAAAATACTAGTA 59.403 40.000 4.77 4.77 0.00 1.82
2675 3449 5.844004 ACATCCGAGGCAAAATACTAGTAG 58.156 41.667 8.85 0.00 0.00 2.57
2676 3450 5.363005 ACATCCGAGGCAAAATACTAGTAGT 59.637 40.000 8.85 8.14 0.00 2.73
2684 3458 8.917415 AGGCAAAATACTAGTAGTACGTTTAC 57.083 34.615 12.25 10.03 32.84 2.01
2732 3506 9.051679 GGAAATTTAACTAACAAGGCACAATTT 57.948 29.630 0.00 0.00 0.00 1.82
2734 3508 9.830975 AAATTTAACTAACAAGGCACAATTTCT 57.169 25.926 0.00 0.00 0.00 2.52
2735 3509 9.476202 AATTTAACTAACAAGGCACAATTTCTC 57.524 29.630 0.00 0.00 0.00 2.87
2736 3510 5.453567 AACTAACAAGGCACAATTTCTCC 57.546 39.130 0.00 0.00 0.00 3.71
2738 3512 2.683211 ACAAGGCACAATTTCTCCCT 57.317 45.000 0.00 0.00 0.00 4.20
2739 3513 2.242043 ACAAGGCACAATTTCTCCCTG 58.758 47.619 0.00 0.00 0.00 4.45
2754 3538 4.517285 TCTCCCTGTATGATCAAACAAGC 58.483 43.478 0.00 0.00 0.00 4.01
2875 3659 3.054802 ACAGATGGGAGAATTCAGTCACC 60.055 47.826 8.44 2.90 0.00 4.02
2983 3767 3.050275 AACGAAGAAGGCAGGCGC 61.050 61.111 0.00 0.00 37.44 6.53
3073 3875 4.688413 GGCTTCTCGTATGATCCTCATTTC 59.312 45.833 0.00 0.00 38.26 2.17
3081 3883 7.386851 TCGTATGATCCTCATTTCCCTTATTC 58.613 38.462 0.00 0.00 38.26 1.75
3086 3888 7.642186 TGATCCTCATTTCCCTTATTCTTTCA 58.358 34.615 0.00 0.00 0.00 2.69
3132 3956 4.280677 TGTGGATTCCTGTGTGAAATTTCC 59.719 41.667 15.48 7.59 0.00 3.13
3162 3986 6.968904 CCATTTCTGAAACTAATCAACGGATG 59.031 38.462 4.73 0.00 32.92 3.51
3201 4025 1.021202 TGCCGACAGAAAACAACAGG 58.979 50.000 0.00 0.00 0.00 4.00
3315 4139 2.588314 GATCTGCTCGGCCTGCTG 60.588 66.667 16.66 15.81 0.00 4.41
3384 4208 1.473434 GGGATGACCGTGGAAGATGTC 60.473 57.143 0.00 0.00 36.97 3.06
3450 4274 0.248661 CCGTACTGCTCTCATGGACG 60.249 60.000 0.00 0.00 0.00 4.79
3595 4466 4.564769 GCTAGCTTGTCAGTAACATGAGTC 59.435 45.833 7.70 0.00 37.82 3.36
3656 4768 9.415544 GATTCTGACATTTTTCTGCTAATTGTT 57.584 29.630 0.00 0.00 0.00 2.83
3856 5338 1.956629 GCGAGTTCAATCCGGGGAGA 61.957 60.000 0.00 0.00 0.00 3.71
4126 5608 9.104965 CAAAATGTATCTAGACCCGTCATTTTA 57.895 33.333 20.98 0.00 39.95 1.52
4264 5746 4.253685 GCAGCTGTCAGGATAGTGTTTTA 58.746 43.478 16.64 0.00 0.00 1.52
4298 5780 2.963599 TCCCCTGGTTTTTAGGACAC 57.036 50.000 0.00 0.00 37.52 3.67
4395 5877 6.642950 TGGGTACAACTTGAAAAATTATTGCG 59.357 34.615 0.00 0.00 0.00 4.85
4436 5918 2.477825 CCAGAGAATGTGTAGCATCGG 58.522 52.381 0.00 0.00 36.67 4.18
4485 5968 6.600822 AGCATAGTGTATTGTGCTGAAGAATT 59.399 34.615 0.00 0.00 45.44 2.17
4513 5996 1.946081 GAGCCATCTTAGCTTCAAGCC 59.054 52.381 5.53 0.00 43.77 4.35
4519 6002 2.794103 TCTTAGCTTCAAGCCATGCAA 58.206 42.857 5.53 0.00 43.77 4.08
4539 6022 4.673580 GCAAAGTTCTGACCTATGCATGTG 60.674 45.833 10.16 2.31 32.53 3.21
4602 6085 0.749454 ATGCGTTGGAGATGCCCTTC 60.749 55.000 0.00 0.00 39.64 3.46
4614 6097 3.193479 AGATGCCCTTCGAAAACATTTCC 59.807 43.478 0.00 0.00 0.00 3.13
4626 6109 3.569250 AACATTTCCGGGTTGAATTCG 57.431 42.857 0.00 0.00 0.00 3.34
4637 6120 2.223340 GGTTGAATTCGCTCGCATCATT 60.223 45.455 0.04 0.00 0.00 2.57
4640 6123 1.599071 GAATTCGCTCGCATCATTCCA 59.401 47.619 0.00 0.00 0.00 3.53
4642 6125 1.089481 TTCGCTCGCATCATTCCACC 61.089 55.000 0.00 0.00 0.00 4.61
4647 6130 2.797087 GCTCGCATCATTCCACCAAATG 60.797 50.000 0.00 0.00 37.87 2.32
4648 6131 1.134753 TCGCATCATTCCACCAAATGC 59.865 47.619 0.00 0.00 39.41 3.56
4679 6162 1.398390 GTGAATGAAGATCGTGGGCAC 59.602 52.381 0.00 0.00 0.00 5.01
4685 6168 2.166459 TGAAGATCGTGGGCACTAGAAG 59.834 50.000 0.00 0.00 0.00 2.85
4706 6189 1.327690 TGCGCTCCTTCCGGATAAGT 61.328 55.000 4.15 0.00 39.01 2.24
4707 6190 0.876342 GCGCTCCTTCCGGATAAGTG 60.876 60.000 4.15 11.05 39.01 3.16
4714 6197 1.417890 CTTCCGGATAAGTGATGCCCT 59.582 52.381 4.15 0.00 0.00 5.19
4719 6202 2.225467 GGATAAGTGATGCCCTCAAGC 58.775 52.381 0.00 0.00 35.07 4.01
4725 6208 2.307098 AGTGATGCCCTCAAGCTTTACT 59.693 45.455 0.00 0.00 35.07 2.24
4735 6218 5.355350 CCCTCAAGCTTTACTTCCTTGTATG 59.645 44.000 0.00 0.00 36.04 2.39
4736 6219 5.940470 CCTCAAGCTTTACTTCCTTGTATGT 59.060 40.000 0.00 0.00 36.04 2.29
4738 6221 7.361286 CCTCAAGCTTTACTTCCTTGTATGTTC 60.361 40.741 0.00 0.00 36.04 3.18
4739 6222 7.224297 TCAAGCTTTACTTCCTTGTATGTTCT 58.776 34.615 0.00 0.00 36.04 3.01
4740 6223 7.387948 TCAAGCTTTACTTCCTTGTATGTTCTC 59.612 37.037 0.00 0.00 36.04 2.87
4741 6224 6.174049 AGCTTTACTTCCTTGTATGTTCTCC 58.826 40.000 0.00 0.00 0.00 3.71
4742 6225 6.013293 AGCTTTACTTCCTTGTATGTTCTCCT 60.013 38.462 0.00 0.00 0.00 3.69
4744 6227 4.559862 ACTTCCTTGTATGTTCTCCTGG 57.440 45.455 0.00 0.00 0.00 4.45
4745 6228 3.910627 ACTTCCTTGTATGTTCTCCTGGT 59.089 43.478 0.00 0.00 0.00 4.00
4746 6229 5.091552 ACTTCCTTGTATGTTCTCCTGGTA 58.908 41.667 0.00 0.00 0.00 3.25
4747 6230 5.546499 ACTTCCTTGTATGTTCTCCTGGTAA 59.454 40.000 0.00 0.00 0.00 2.85
4748 6231 5.677319 TCCTTGTATGTTCTCCTGGTAAG 57.323 43.478 0.00 0.00 0.00 2.34
4749 6232 5.091552 TCCTTGTATGTTCTCCTGGTAAGT 58.908 41.667 0.00 0.00 0.00 2.24
4750 6233 6.258354 TCCTTGTATGTTCTCCTGGTAAGTA 58.742 40.000 0.00 0.00 0.00 2.24
4751 6234 6.901300 TCCTTGTATGTTCTCCTGGTAAGTAT 59.099 38.462 0.00 0.00 0.00 2.12
4752 6235 7.069578 TCCTTGTATGTTCTCCTGGTAAGTATC 59.930 40.741 0.00 0.00 0.00 2.24
4753 6236 7.070074 CCTTGTATGTTCTCCTGGTAAGTATCT 59.930 40.741 0.00 0.00 0.00 1.98
4754 6237 7.973048 TGTATGTTCTCCTGGTAAGTATCTT 57.027 36.000 0.00 0.00 0.00 2.40
4805 6288 2.784596 CCACACTTGGCGCGTATG 59.215 61.111 8.43 2.35 35.56 2.39
4806 6289 2.032634 CCACACTTGGCGCGTATGT 61.033 57.895 8.43 3.03 35.56 2.29
4807 6290 1.573829 CCACACTTGGCGCGTATGTT 61.574 55.000 8.43 0.00 35.56 2.71
4808 6291 0.452618 CACACTTGGCGCGTATGTTG 60.453 55.000 8.43 2.60 0.00 3.33
4809 6292 0.882927 ACACTTGGCGCGTATGTTGT 60.883 50.000 8.43 3.30 0.00 3.32
4810 6293 0.179225 CACTTGGCGCGTATGTTGTC 60.179 55.000 8.43 0.00 0.00 3.18
4811 6294 0.601576 ACTTGGCGCGTATGTTGTCA 60.602 50.000 8.43 0.00 0.00 3.58
4812 6295 0.095245 CTTGGCGCGTATGTTGTCAG 59.905 55.000 8.43 0.00 0.00 3.51
4813 6296 1.295357 TTGGCGCGTATGTTGTCAGG 61.295 55.000 8.43 0.00 0.00 3.86
4814 6297 1.740296 GGCGCGTATGTTGTCAGGT 60.740 57.895 8.43 0.00 0.00 4.00
4815 6298 1.296056 GGCGCGTATGTTGTCAGGTT 61.296 55.000 8.43 0.00 0.00 3.50
4816 6299 0.179225 GCGCGTATGTTGTCAGGTTG 60.179 55.000 8.43 0.00 0.00 3.77
4817 6300 1.424403 CGCGTATGTTGTCAGGTTGA 58.576 50.000 0.00 0.00 0.00 3.18
4818 6301 1.999735 CGCGTATGTTGTCAGGTTGAT 59.000 47.619 0.00 0.00 0.00 2.57
4835 6318 4.072131 GTTGATGCAACCTAAGAACCTCA 58.928 43.478 0.00 0.00 38.30 3.86
4840 6323 7.801104 TGATGCAACCTAAGAACCTCATATAA 58.199 34.615 0.00 0.00 0.00 0.98
4894 6377 4.642429 ACCTCAACATTAGGACAACACTC 58.358 43.478 0.00 0.00 37.57 3.51
4951 6434 5.144100 TCACCAACCCAAATCACTGTTTAT 58.856 37.500 0.00 0.00 0.00 1.40
5026 6509 7.040132 TGCATAAAAATGTGTACATGGTCTCAA 60.040 33.333 0.00 0.00 36.56 3.02
5042 6525 6.234723 GGTCTCAAAAGAGCTAAAGAAGTG 57.765 41.667 0.00 0.00 44.84 3.16
5043 6526 5.334491 GGTCTCAAAAGAGCTAAAGAAGTGC 60.334 44.000 0.00 0.00 44.84 4.40
5044 6527 5.237344 GTCTCAAAAGAGCTAAAGAAGTGCA 59.763 40.000 0.00 0.00 30.24 4.57
5045 6528 5.468072 TCTCAAAAGAGCTAAAGAAGTGCAG 59.532 40.000 0.00 0.00 0.00 4.41
5046 6529 5.126067 TCAAAAGAGCTAAAGAAGTGCAGT 58.874 37.500 0.00 0.00 0.00 4.40
5047 6530 5.008019 TCAAAAGAGCTAAAGAAGTGCAGTG 59.992 40.000 0.00 0.00 0.00 3.66
5048 6531 2.421619 AGAGCTAAAGAAGTGCAGTGC 58.578 47.619 8.58 8.58 0.00 4.40
5049 6532 2.146342 GAGCTAAAGAAGTGCAGTGCA 58.854 47.619 15.37 15.37 35.60 4.57
5050 6533 2.149578 AGCTAAAGAAGTGCAGTGCAG 58.850 47.619 20.42 5.11 40.08 4.41
5051 6534 1.876156 GCTAAAGAAGTGCAGTGCAGT 59.124 47.619 20.42 20.16 44.78 4.40
5052 6535 2.350197 GCTAAAGAAGTGCAGTGCAGTG 60.350 50.000 25.71 17.56 41.77 3.66
5053 6536 0.383231 AAAGAAGTGCAGTGCAGTGC 59.617 50.000 34.65 34.65 41.77 4.40
5054 6537 1.450531 AAGAAGTGCAGTGCAGTGCC 61.451 55.000 36.86 28.27 41.77 5.01
5055 6538 1.895707 GAAGTGCAGTGCAGTGCCT 60.896 57.895 36.86 29.72 41.77 4.75
5056 6539 1.849976 GAAGTGCAGTGCAGTGCCTC 61.850 60.000 36.86 29.15 41.77 4.70
5057 6540 2.592574 GTGCAGTGCAGTGCCTCA 60.593 61.111 36.86 20.61 43.28 3.86
5058 6541 2.188829 GTGCAGTGCAGTGCCTCAA 61.189 57.895 36.86 20.26 43.28 3.02
5059 6542 2.188829 TGCAGTGCAGTGCCTCAAC 61.189 57.895 36.86 14.63 43.28 3.18
5060 6543 1.895707 GCAGTGCAGTGCCTCAACT 60.896 57.895 32.16 6.31 37.49 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 6.647067 ACTGACAGACAACTAAGAAATACTGC 59.353 38.462 10.08 0.00 0.00 4.40
78 79 5.924475 ATGGTAACTGAAGAAGAAACACG 57.076 39.130 0.00 0.00 37.61 4.49
95 96 5.482163 TGACTGAACACTGATGAATGGTA 57.518 39.130 0.00 0.00 0.00 3.25
97 98 5.892160 AATGACTGAACACTGATGAATGG 57.108 39.130 0.00 0.00 0.00 3.16
155 156 7.013750 TGACACATGTGGTAAGCAATCTAAAAA 59.986 33.333 28.64 0.00 34.19 1.94
156 157 6.488344 TGACACATGTGGTAAGCAATCTAAAA 59.512 34.615 28.64 0.00 34.19 1.52
157 158 6.000840 TGACACATGTGGTAAGCAATCTAAA 58.999 36.000 28.64 0.00 34.19 1.85
158 159 5.555966 TGACACATGTGGTAAGCAATCTAA 58.444 37.500 28.64 0.00 34.19 2.10
159 160 5.159273 TGACACATGTGGTAAGCAATCTA 57.841 39.130 28.64 4.34 34.19 1.98
160 161 4.019792 TGACACATGTGGTAAGCAATCT 57.980 40.909 28.64 4.36 34.19 2.40
161 162 4.156556 ACATGACACATGTGGTAAGCAATC 59.843 41.667 28.64 14.99 34.19 2.67
162 163 4.081406 ACATGACACATGTGGTAAGCAAT 58.919 39.130 28.64 5.90 34.19 3.56
163 164 3.252944 CACATGACACATGTGGTAAGCAA 59.747 43.478 28.64 7.21 44.04 3.91
164 165 2.813172 CACATGACACATGTGGTAAGCA 59.187 45.455 28.64 17.63 44.04 3.91
165 166 3.253188 AACACATGACACATGTGGTAAGC 59.747 43.478 32.98 13.03 46.93 3.09
172 173 5.164620 TGGAGATAACACATGACACATGT 57.835 39.130 10.94 10.94 0.00 3.21
173 174 6.492254 CAATGGAGATAACACATGACACATG 58.508 40.000 0.00 9.72 0.00 3.21
174 175 5.066893 GCAATGGAGATAACACATGACACAT 59.933 40.000 0.00 0.00 0.00 3.21
175 176 4.395854 GCAATGGAGATAACACATGACACA 59.604 41.667 0.00 0.00 0.00 3.72
176 177 4.637534 AGCAATGGAGATAACACATGACAC 59.362 41.667 0.00 0.00 0.00 3.67
177 178 4.847198 AGCAATGGAGATAACACATGACA 58.153 39.130 0.00 0.00 0.00 3.58
178 179 5.587844 AGAAGCAATGGAGATAACACATGAC 59.412 40.000 0.00 0.00 0.00 3.06
179 180 5.587443 CAGAAGCAATGGAGATAACACATGA 59.413 40.000 0.00 0.00 0.00 3.07
180 181 5.732528 GCAGAAGCAATGGAGATAACACATG 60.733 44.000 0.00 0.00 41.58 3.21
181 182 4.337555 GCAGAAGCAATGGAGATAACACAT 59.662 41.667 0.00 0.00 41.58 3.21
182 183 3.691118 GCAGAAGCAATGGAGATAACACA 59.309 43.478 0.00 0.00 41.58 3.72
183 184 3.065925 GGCAGAAGCAATGGAGATAACAC 59.934 47.826 0.00 0.00 44.61 3.32
184 185 3.054139 AGGCAGAAGCAATGGAGATAACA 60.054 43.478 0.00 0.00 44.61 2.41
185 186 3.549794 AGGCAGAAGCAATGGAGATAAC 58.450 45.455 0.00 0.00 44.61 1.89
186 187 3.939740 AGGCAGAAGCAATGGAGATAA 57.060 42.857 0.00 0.00 44.61 1.75
187 188 3.200605 TCAAGGCAGAAGCAATGGAGATA 59.799 43.478 0.00 0.00 44.61 1.98
188 189 2.025605 TCAAGGCAGAAGCAATGGAGAT 60.026 45.455 0.00 0.00 44.61 2.75
189 190 1.352017 TCAAGGCAGAAGCAATGGAGA 59.648 47.619 0.00 0.00 44.61 3.71
190 191 1.830279 TCAAGGCAGAAGCAATGGAG 58.170 50.000 0.00 0.00 44.61 3.86
191 192 2.519771 ATCAAGGCAGAAGCAATGGA 57.480 45.000 0.00 0.00 44.61 3.41
192 193 3.018856 TGTATCAAGGCAGAAGCAATGG 58.981 45.455 0.00 0.00 44.61 3.16
193 194 4.913335 ATGTATCAAGGCAGAAGCAATG 57.087 40.909 0.00 0.00 44.61 2.82
194 195 6.301486 TCATATGTATCAAGGCAGAAGCAAT 58.699 36.000 1.90 0.00 44.61 3.56
195 196 5.683681 TCATATGTATCAAGGCAGAAGCAA 58.316 37.500 1.90 0.00 44.61 3.91
196 197 5.070847 TCTCATATGTATCAAGGCAGAAGCA 59.929 40.000 1.90 0.00 44.61 3.91
197 198 5.545588 TCTCATATGTATCAAGGCAGAAGC 58.454 41.667 1.90 0.00 41.10 3.86
198 199 7.384477 TCATCTCATATGTATCAAGGCAGAAG 58.616 38.462 1.90 0.00 0.00 2.85
199 200 7.307131 TCATCTCATATGTATCAAGGCAGAA 57.693 36.000 1.90 0.00 0.00 3.02
214 215 9.152327 AGAACATAGATCAAACCTCATCTCATA 57.848 33.333 0.00 0.00 31.57 2.15
266 267 8.383175 TGGGACTAAATAACTGAAGAACATTCT 58.617 33.333 0.00 0.00 39.74 2.40
267 268 8.561738 TGGGACTAAATAACTGAAGAACATTC 57.438 34.615 0.00 0.00 0.00 2.67
268 269 8.934023 TTGGGACTAAATAACTGAAGAACATT 57.066 30.769 0.00 0.00 0.00 2.71
302 880 2.787567 GCTCTGGACCTAGACCCGC 61.788 68.421 0.00 0.00 0.00 6.13
305 883 0.399233 ATGGGCTCTGGACCTAGACC 60.399 60.000 11.41 11.41 42.43 3.85
307 885 0.399091 CCATGGGCTCTGGACCTAGA 60.399 60.000 2.85 0.00 42.43 2.43
308 886 0.399091 TCCATGGGCTCTGGACCTAG 60.399 60.000 13.02 0.00 42.43 3.02
309 887 0.268869 ATCCATGGGCTCTGGACCTA 59.731 55.000 13.02 0.00 45.27 3.08
310 888 0.625683 AATCCATGGGCTCTGGACCT 60.626 55.000 13.02 0.00 45.27 3.85
311 889 0.259938 AAATCCATGGGCTCTGGACC 59.740 55.000 13.02 0.00 45.27 4.46
312 890 1.396653 CAAATCCATGGGCTCTGGAC 58.603 55.000 13.02 0.00 45.27 4.02
382 1008 1.661341 CAGCAGAATCGGAGGGAAAG 58.339 55.000 0.00 0.00 0.00 2.62
454 1107 3.357079 GTGGTTGAGGTGCCGCTG 61.357 66.667 0.00 0.00 32.87 5.18
455 1108 4.643387 GGTGGTTGAGGTGCCGCT 62.643 66.667 0.00 0.00 35.72 5.52
456 1109 4.643387 AGGTGGTTGAGGTGCCGC 62.643 66.667 0.00 0.00 34.72 6.53
498 1151 1.974236 GACATGGGGAGTATCAGGGAG 59.026 57.143 0.00 0.00 36.25 4.30
604 1257 5.402568 CCATGGATTAACTACTGAACGATCG 59.597 44.000 14.88 14.88 0.00 3.69
614 1267 5.989777 ACGTCATTAGCCATGGATTAACTAC 59.010 40.000 18.40 12.71 33.07 2.73
639 1292 2.361438 GACCCATTAGTACGAGGTGGAG 59.639 54.545 9.92 4.68 31.59 3.86
643 1296 1.755380 GCAGACCCATTAGTACGAGGT 59.245 52.381 0.00 0.00 0.00 3.85
671 1327 4.827835 AGATAGAGCACTATAAACTCGCCA 59.172 41.667 3.46 0.00 39.16 5.69
672 1328 5.379732 AGATAGAGCACTATAAACTCGCC 57.620 43.478 3.46 0.00 39.16 5.54
675 1331 9.134734 GCACAATAGATAGAGCACTATAAACTC 57.865 37.037 3.46 0.00 39.16 3.01
676 1332 8.865090 AGCACAATAGATAGAGCACTATAAACT 58.135 33.333 3.46 0.54 39.16 2.66
677 1333 8.920665 CAGCACAATAGATAGAGCACTATAAAC 58.079 37.037 3.46 0.00 39.16 2.01
678 1334 8.860088 TCAGCACAATAGATAGAGCACTATAAA 58.140 33.333 3.46 0.00 39.16 1.40
680 1336 8.586879 ATCAGCACAATAGATAGAGCACTATA 57.413 34.615 3.46 0.00 39.16 1.31
681 1337 6.907853 TCAGCACAATAGATAGAGCACTAT 57.092 37.500 3.06 3.06 41.41 2.12
683 1339 5.539574 AGATCAGCACAATAGATAGAGCACT 59.460 40.000 0.00 0.00 0.00 4.40
684 1340 5.782047 AGATCAGCACAATAGATAGAGCAC 58.218 41.667 0.00 0.00 0.00 4.40
686 1342 6.453943 TCAAGATCAGCACAATAGATAGAGC 58.546 40.000 0.00 0.00 0.00 4.09
688 1344 7.830099 TCTCAAGATCAGCACAATAGATAGA 57.170 36.000 0.00 0.00 0.00 1.98
689 1345 8.305317 TCATCTCAAGATCAGCACAATAGATAG 58.695 37.037 0.00 0.00 31.21 2.08
690 1346 8.186709 TCATCTCAAGATCAGCACAATAGATA 57.813 34.615 0.00 0.00 31.21 1.98
691 1347 7.015389 TCTCATCTCAAGATCAGCACAATAGAT 59.985 37.037 0.00 0.00 31.21 1.98
694 1372 6.475596 TCTCATCTCAAGATCAGCACAATA 57.524 37.500 0.00 0.00 31.21 1.90
696 1374 4.813750 TCTCATCTCAAGATCAGCACAA 57.186 40.909 0.00 0.00 31.21 3.33
701 1379 7.769507 TGATCCTTTTTCTCATCTCAAGATCAG 59.230 37.037 0.00 0.00 31.21 2.90
714 1392 8.785329 ACTATTTCTGAGTGATCCTTTTTCTC 57.215 34.615 0.00 0.00 0.00 2.87
715 1393 9.883142 CTACTATTTCTGAGTGATCCTTTTTCT 57.117 33.333 0.00 0.00 0.00 2.52
734 1412 9.790389 CGAGTCACTGTTCTATTTTCTACTATT 57.210 33.333 0.00 0.00 0.00 1.73
735 1413 8.958506 ACGAGTCACTGTTCTATTTTCTACTAT 58.041 33.333 0.00 0.00 0.00 2.12
736 1414 8.332996 ACGAGTCACTGTTCTATTTTCTACTA 57.667 34.615 0.00 0.00 0.00 1.82
737 1415 7.216973 ACGAGTCACTGTTCTATTTTCTACT 57.783 36.000 0.00 0.00 0.00 2.57
738 1416 7.201249 CGAACGAGTCACTGTTCTATTTTCTAC 60.201 40.741 14.38 0.00 41.74 2.59
739 1417 6.800408 CGAACGAGTCACTGTTCTATTTTCTA 59.200 38.462 14.38 0.00 41.74 2.10
740 1418 5.629849 CGAACGAGTCACTGTTCTATTTTCT 59.370 40.000 14.38 0.00 41.74 2.52
741 1419 5.164080 CCGAACGAGTCACTGTTCTATTTTC 60.164 44.000 14.38 0.00 41.74 2.29
742 1420 4.684703 CCGAACGAGTCACTGTTCTATTTT 59.315 41.667 14.38 0.00 41.74 1.82
746 1424 2.497138 TCCGAACGAGTCACTGTTCTA 58.503 47.619 14.38 4.40 41.74 2.10
748 1426 2.349297 ATCCGAACGAGTCACTGTTC 57.651 50.000 9.05 9.05 40.77 3.18
751 1429 2.120232 GCATATCCGAACGAGTCACTG 58.880 52.381 0.00 0.00 0.00 3.66
781 1462 1.201647 CATTGCAGGCACAGAAAGGAG 59.798 52.381 0.00 0.00 0.00 3.69
800 1481 1.905894 TGATGGGTGGAAGAATCGTCA 59.094 47.619 0.00 0.00 0.00 4.35
801 1482 2.678336 GTTGATGGGTGGAAGAATCGTC 59.322 50.000 0.00 0.00 0.00 4.20
802 1483 2.711542 GTTGATGGGTGGAAGAATCGT 58.288 47.619 0.00 0.00 0.00 3.73
803 1484 1.665679 CGTTGATGGGTGGAAGAATCG 59.334 52.381 0.00 0.00 0.00 3.34
804 1485 1.401905 GCGTTGATGGGTGGAAGAATC 59.598 52.381 0.00 0.00 0.00 2.52
805 1486 1.463674 GCGTTGATGGGTGGAAGAAT 58.536 50.000 0.00 0.00 0.00 2.40
806 1487 0.608035 GGCGTTGATGGGTGGAAGAA 60.608 55.000 0.00 0.00 0.00 2.52
807 1488 1.002624 GGCGTTGATGGGTGGAAGA 60.003 57.895 0.00 0.00 0.00 2.87
808 1489 1.002134 AGGCGTTGATGGGTGGAAG 60.002 57.895 0.00 0.00 0.00 3.46
809 1490 1.303236 CAGGCGTTGATGGGTGGAA 60.303 57.895 0.00 0.00 0.00 3.53
810 1491 2.350895 CAGGCGTTGATGGGTGGA 59.649 61.111 0.00 0.00 0.00 4.02
811 1492 3.443045 GCAGGCGTTGATGGGTGG 61.443 66.667 0.00 0.00 0.00 4.61
812 1493 2.535485 TAGGCAGGCGTTGATGGGTG 62.535 60.000 0.00 0.00 0.00 4.61
813 1494 2.297895 TAGGCAGGCGTTGATGGGT 61.298 57.895 0.00 0.00 0.00 4.51
814 1495 1.819632 GTAGGCAGGCGTTGATGGG 60.820 63.158 0.00 0.00 0.00 4.00
815 1496 1.819632 GGTAGGCAGGCGTTGATGG 60.820 63.158 0.00 0.00 0.00 3.51
816 1497 0.464036 TAGGTAGGCAGGCGTTGATG 59.536 55.000 0.00 0.00 0.00 3.07
817 1498 0.464452 GTAGGTAGGCAGGCGTTGAT 59.536 55.000 0.00 0.00 0.00 2.57
818 1499 1.610554 GGTAGGTAGGCAGGCGTTGA 61.611 60.000 0.00 0.00 0.00 3.18
819 1500 1.153429 GGTAGGTAGGCAGGCGTTG 60.153 63.158 0.00 0.00 0.00 4.10
820 1501 2.364780 GGGTAGGTAGGCAGGCGTT 61.365 63.158 0.00 0.00 0.00 4.84
821 1502 2.762875 GGGTAGGTAGGCAGGCGT 60.763 66.667 0.00 0.00 0.00 5.68
822 1503 3.547513 GGGGTAGGTAGGCAGGCG 61.548 72.222 0.00 0.00 0.00 5.52
823 1504 1.984288 CTTGGGGTAGGTAGGCAGGC 61.984 65.000 0.00 0.00 0.00 4.85
824 1505 1.345715 CCTTGGGGTAGGTAGGCAGG 61.346 65.000 0.00 0.00 0.00 4.85
825 1506 2.221918 CCTTGGGGTAGGTAGGCAG 58.778 63.158 0.00 0.00 0.00 4.85
826 1507 4.492232 CCTTGGGGTAGGTAGGCA 57.508 61.111 0.00 0.00 0.00 4.75
827 1508 2.916661 GCCTTGGGGTAGGTAGGC 59.083 66.667 0.00 0.00 45.57 3.93
930 1614 2.556189 TCAGACTGAAGACAGAGAGTGC 59.444 50.000 1.64 0.00 46.03 4.40
962 1678 3.057547 CTCGCTCACTCGGTCCCTG 62.058 68.421 0.00 0.00 0.00 4.45
963 1679 2.752238 CTCGCTCACTCGGTCCCT 60.752 66.667 0.00 0.00 0.00 4.20
964 1680 4.500116 GCTCGCTCACTCGGTCCC 62.500 72.222 0.00 0.00 0.00 4.46
965 1681 4.838486 CGCTCGCTCACTCGGTCC 62.838 72.222 0.00 0.00 0.00 4.46
966 1682 4.838486 CCGCTCGCTCACTCGGTC 62.838 72.222 0.00 0.00 37.33 4.79
968 1684 4.544689 CTCCGCTCGCTCACTCGG 62.545 72.222 0.00 0.00 42.96 4.63
969 1685 4.544689 CCTCCGCTCGCTCACTCG 62.545 72.222 0.00 0.00 0.00 4.18
973 1689 2.496341 CATTCCTCCGCTCGCTCA 59.504 61.111 0.00 0.00 0.00 4.26
1060 1780 3.626924 GACCGCCCACCACAGAGT 61.627 66.667 0.00 0.00 0.00 3.24
1086 1806 2.529136 CCCCACCAGACCCACTCA 60.529 66.667 0.00 0.00 0.00 3.41
1114 1834 4.452733 CCTCAGGGCCCGTTCGAC 62.453 72.222 18.44 0.00 0.00 4.20
1239 1959 2.577059 CGCGGGACTATGTGGTGT 59.423 61.111 0.00 0.00 0.00 4.16
1243 1963 2.954868 GACGCGCGGGACTATGTG 60.955 66.667 35.22 1.83 0.00 3.21
1319 2040 6.178324 ACTTGAGATCTGAAGAAATCATGCA 58.822 36.000 26.13 0.00 37.44 3.96
1322 2043 9.381033 CTTGTACTTGAGATCTGAAGAAATCAT 57.619 33.333 26.13 7.24 37.44 2.45
1324 2045 8.994429 TCTTGTACTTGAGATCTGAAGAAATC 57.006 34.615 26.13 13.61 0.00 2.17
1325 2046 9.213799 GTTCTTGTACTTGAGATCTGAAGAAAT 57.786 33.333 26.13 8.60 31.80 2.17
1326 2047 8.424918 AGTTCTTGTACTTGAGATCTGAAGAAA 58.575 33.333 26.13 15.82 31.80 2.52
1330 2051 7.055667 ACAGTTCTTGTACTTGAGATCTGAA 57.944 36.000 23.79 0.00 40.02 3.02
1338 2059 4.116961 CCGTTGACAGTTCTTGTACTTGA 58.883 43.478 0.00 0.00 41.05 3.02
1342 2063 3.057734 CCTCCGTTGACAGTTCTTGTAC 58.942 50.000 0.00 0.00 41.05 2.90
1345 2066 1.867233 CACCTCCGTTGACAGTTCTTG 59.133 52.381 0.00 0.00 0.00 3.02
1353 2074 1.608283 CCTTCTTCCACCTCCGTTGAC 60.608 57.143 0.00 0.00 0.00 3.18
1354 2075 0.685097 CCTTCTTCCACCTCCGTTGA 59.315 55.000 0.00 0.00 0.00 3.18
1355 2076 0.685097 TCCTTCTTCCACCTCCGTTG 59.315 55.000 0.00 0.00 0.00 4.10
1356 2077 0.977395 CTCCTTCTTCCACCTCCGTT 59.023 55.000 0.00 0.00 0.00 4.44
1411 2132 4.204012 TGAATATAAAGGAGGCGTTTGGG 58.796 43.478 0.00 0.00 0.00 4.12
1432 2153 1.081892 GTGATGTAGCCTGTGTGCTG 58.918 55.000 0.00 0.00 42.77 4.41
1469 2190 5.391312 AAGCCATGTAATCACTTTGTTCC 57.609 39.130 0.00 0.00 0.00 3.62
1474 2195 8.474831 GGGTATAAAAAGCCATGTAATCACTTT 58.525 33.333 0.00 0.00 36.99 2.66
1498 2219 1.072505 AGTTGGTAGGCGTTGTGGG 59.927 57.895 0.00 0.00 0.00 4.61
1503 2224 0.605589 GGAAGCAGTTGGTAGGCGTT 60.606 55.000 0.00 0.00 0.00 4.84
1504 2225 1.003718 GGAAGCAGTTGGTAGGCGT 60.004 57.895 0.00 0.00 0.00 5.68
1541 2262 2.731721 CCGTTGAGTGCGTGCGTA 60.732 61.111 0.00 0.00 0.00 4.42
1629 2375 3.118261 TCCTTGAGTGCATGGATAAGGTC 60.118 47.826 19.69 3.37 41.80 3.85
1647 2393 3.580084 TGGAGCTGCCAAGTCCTT 58.420 55.556 1.53 0.00 45.87 3.36
1654 2400 4.007644 CGTCTGGTGGAGCTGCCA 62.008 66.667 1.53 1.36 46.96 4.92
1704 2450 1.081242 GGCGTGCATGGTTCTGTTG 60.081 57.895 8.27 0.00 0.00 3.33
1712 2458 1.064505 CACTAATCTTGGCGTGCATGG 59.935 52.381 8.27 0.00 0.00 3.66
1721 2467 5.705441 TGGTTCTTGTTAGCACTAATCTTGG 59.295 40.000 0.00 0.00 0.00 3.61
1739 2485 5.230942 CACTCAACTACGAAAGATGGTTCT 58.769 41.667 0.00 0.00 0.00 3.01
1740 2486 4.143094 GCACTCAACTACGAAAGATGGTTC 60.143 45.833 0.00 0.00 0.00 3.62
1741 2487 3.746492 GCACTCAACTACGAAAGATGGTT 59.254 43.478 0.00 0.00 0.00 3.67
1742 2488 3.006967 AGCACTCAACTACGAAAGATGGT 59.993 43.478 0.00 0.00 0.00 3.55
1744 2490 3.614616 GGAGCACTCAACTACGAAAGATG 59.385 47.826 0.00 0.00 0.00 2.90
1752 2498 3.944055 TCAGAAGGAGCACTCAACTAC 57.056 47.619 0.00 0.00 0.00 2.73
1759 2505 5.426504 CATTTCTACATCAGAAGGAGCACT 58.573 41.667 0.00 0.00 44.10 4.40
1808 2562 9.184062 CGTCAGTACTGTACAGTGTTAAAATAA 57.816 33.333 33.77 11.58 42.52 1.40
1809 2563 7.326789 GCGTCAGTACTGTACAGTGTTAAAATA 59.673 37.037 33.77 12.30 42.52 1.40
1810 2564 6.145048 GCGTCAGTACTGTACAGTGTTAAAAT 59.855 38.462 33.77 13.64 42.52 1.82
1811 2565 5.459762 GCGTCAGTACTGTACAGTGTTAAAA 59.540 40.000 33.77 13.75 42.52 1.52
1812 2566 4.977963 GCGTCAGTACTGTACAGTGTTAAA 59.022 41.667 33.77 14.47 42.52 1.52
1816 2570 1.951602 TGCGTCAGTACTGTACAGTGT 59.048 47.619 33.77 20.26 42.52 3.55
1818 2572 2.225963 GTCTGCGTCAGTACTGTACAGT 59.774 50.000 30.13 30.13 45.02 3.55
1819 2573 2.725145 CGTCTGCGTCAGTACTGTACAG 60.725 54.545 21.44 21.44 32.61 2.74
1820 2574 1.196127 CGTCTGCGTCAGTACTGTACA 59.804 52.381 21.99 16.41 32.61 2.90
1823 2577 1.081376 GCGTCTGCGTCAGTACTGT 60.081 57.895 21.99 0.00 40.81 3.55
1824 2578 3.755404 GCGTCTGCGTCAGTACTG 58.245 61.111 17.17 17.17 40.81 2.74
1834 2588 1.398041 TGCATATGTTTGAGCGTCTGC 59.602 47.619 4.29 0.00 43.24 4.26
1836 2590 2.698803 TGTGCATATGTTTGAGCGTCT 58.301 42.857 4.29 0.00 0.00 4.18
1842 2596 7.656412 ACAAAAGTGTATGTGCATATGTTTGA 58.344 30.769 6.16 0.00 35.72 2.69
1844 2598 8.885494 AAACAAAAGTGTATGTGCATATGTTT 57.115 26.923 6.16 4.18 36.80 2.83
1845 2599 8.885494 AAAACAAAAGTGTATGTGCATATGTT 57.115 26.923 6.16 0.00 36.80 2.71
1851 2605 8.709386 ACAATAAAAACAAAAGTGTATGTGCA 57.291 26.923 0.00 0.00 36.80 4.57
1852 2606 9.631639 GAACAATAAAAACAAAAGTGTATGTGC 57.368 29.630 0.00 0.00 36.80 4.57
1883 2637 1.463056 CACGGTGAGCTATCGCAAAAA 59.537 47.619 0.74 0.00 35.97 1.94
1884 2638 1.075542 CACGGTGAGCTATCGCAAAA 58.924 50.000 0.74 0.00 35.97 2.44
1885 2639 0.037697 ACACGGTGAGCTATCGCAAA 60.038 50.000 16.29 0.00 35.97 3.68
1887 2641 0.037697 AAACACGGTGAGCTATCGCA 60.038 50.000 16.29 0.00 35.97 5.10
1888 2642 0.645868 GAAACACGGTGAGCTATCGC 59.354 55.000 16.29 0.00 35.97 4.58
1914 2668 5.727791 GCAACATATAAGAACAGCCGAACAG 60.728 44.000 0.00 0.00 0.00 3.16
1924 2678 6.083630 TGCGTTTTCAGCAACATATAAGAAC 58.916 36.000 0.00 0.00 42.18 3.01
1932 2686 0.314935 CCCTGCGTTTTCAGCAACAT 59.685 50.000 0.00 0.00 44.67 2.71
1946 2703 2.238521 TGTCAATGAAACCTTCCCTGC 58.761 47.619 0.00 0.00 0.00 4.85
2017 2774 5.469760 GCCAAATTTATTTGCCAGAACTTGT 59.530 36.000 9.22 0.00 44.32 3.16
2089 2846 0.240145 CGTCAAGTACTGCGAGTCCA 59.760 55.000 0.00 0.00 0.00 4.02
2101 2858 1.882352 GCCCATTCTTCACCGTCAAGT 60.882 52.381 0.00 0.00 0.00 3.16
2184 2941 9.326413 CCTACTTTTCTTTTGAGACAGAAGTAA 57.674 33.333 0.00 0.00 30.68 2.24
2185 2942 8.701895 TCCTACTTTTCTTTTGAGACAGAAGTA 58.298 33.333 0.00 0.00 30.68 2.24
2186 2943 7.565680 TCCTACTTTTCTTTTGAGACAGAAGT 58.434 34.615 0.00 0.00 30.68 3.01
2187 2944 8.614469 ATCCTACTTTTCTTTTGAGACAGAAG 57.386 34.615 0.00 0.00 30.68 2.85
2188 2945 8.980481 AATCCTACTTTTCTTTTGAGACAGAA 57.020 30.769 0.00 0.00 0.00 3.02
2189 2946 8.980481 AAATCCTACTTTTCTTTTGAGACAGA 57.020 30.769 0.00 0.00 0.00 3.41
2191 2948 9.847224 AGTAAATCCTACTTTTCTTTTGAGACA 57.153 29.630 0.00 0.00 0.00 3.41
2263 3030 9.570488 CGAGTTCTTTTAGCAAATAGTACTAGT 57.430 33.333 8.85 2.42 0.00 2.57
2264 3031 9.570488 ACGAGTTCTTTTAGCAAATAGTACTAG 57.430 33.333 8.85 0.00 0.00 2.57
2369 3138 7.773224 ACCAGATTTGACACCGAATTTATATCA 59.227 33.333 0.00 0.00 0.00 2.15
2517 3286 8.760980 TCTCCAAAGGACTTTTTGATAGAAAA 57.239 30.769 0.00 0.00 39.79 2.29
2674 3448 8.248253 TCATGTGATGTATTGAGTAAACGTACT 58.752 33.333 0.00 0.00 43.56 2.73
2675 3449 8.402326 TCATGTGATGTATTGAGTAAACGTAC 57.598 34.615 0.00 0.00 0.00 3.67
2676 3450 9.244799 GATCATGTGATGTATTGAGTAAACGTA 57.755 33.333 0.00 0.00 34.37 3.57
2684 3458 6.681777 TCCTACGATCATGTGATGTATTGAG 58.318 40.000 0.00 0.00 34.37 3.02
2732 3506 4.019411 TGCTTGTTTGATCATACAGGGAGA 60.019 41.667 23.22 8.42 0.00 3.71
2733 3507 4.264253 TGCTTGTTTGATCATACAGGGAG 58.736 43.478 23.22 16.84 0.00 4.30
2734 3508 4.299586 TGCTTGTTTGATCATACAGGGA 57.700 40.909 23.22 19.79 0.00 4.20
2735 3509 4.701651 TCTTGCTTGTTTGATCATACAGGG 59.298 41.667 23.22 17.84 0.00 4.45
2736 3510 5.885230 TCTTGCTTGTTTGATCATACAGG 57.115 39.130 19.56 19.56 0.00 4.00
2983 3767 1.885887 TCGGCCTGAAGTTGGAAAATG 59.114 47.619 0.00 0.00 0.00 2.32
3073 3875 6.603940 TTGTTGGGAATGAAAGAATAAGGG 57.396 37.500 0.00 0.00 0.00 3.95
3081 3883 8.830201 TGATATTTGTTTGTTGGGAATGAAAG 57.170 30.769 0.00 0.00 0.00 2.62
3086 3888 9.820725 CACATATGATATTTGTTTGTTGGGAAT 57.179 29.630 10.38 0.00 0.00 3.01
3132 3956 7.846107 CGTTGATTAGTTTCAGAAATGGATACG 59.154 37.037 0.00 1.19 42.51 3.06
3162 3986 4.496507 GGCAACAGACTGAAGAGTGAAAAC 60.497 45.833 10.08 0.00 30.16 2.43
3201 4025 7.038658 ACCTCTGTATTTATAGCCTTCATCCTC 60.039 40.741 0.00 0.00 0.00 3.71
3315 4139 6.036517 CACTGTAATCCATGTTTGACTCTAGC 59.963 42.308 0.00 0.00 0.00 3.42
3384 4208 7.310664 AGTAGAACAACTTGCATTCATCAATG 58.689 34.615 0.00 0.00 42.26 2.82
3450 4274 2.432444 TGCATGCTTAGTAACACCACC 58.568 47.619 20.33 0.00 0.00 4.61
3656 4768 6.716284 TGAACACCATCATAACCTGTCATAA 58.284 36.000 0.00 0.00 0.00 1.90
3847 5133 2.685743 TCGGCAAATCTCCCCGGA 60.686 61.111 0.73 0.00 42.18 5.14
3856 5338 2.680370 GGAGACCCCCTCGGCAAAT 61.680 63.158 0.00 0.00 42.89 2.32
4126 5608 6.831976 ACAGAGGAGTACTTTCTTTGACATT 58.168 36.000 18.14 1.24 0.00 2.71
4264 5746 3.267031 CCAGGGGAATAAAGGACTGTCTT 59.733 47.826 7.85 0.00 0.00 3.01
4298 5780 4.574013 GCTGTGATTCAGGATTCAACTAGG 59.426 45.833 0.00 0.00 43.78 3.02
4358 5840 5.767816 AGTTGTACCCAGCTAAAAGTTTG 57.232 39.130 0.00 0.00 29.37 2.93
4365 5847 6.969993 ATTTTTCAAGTTGTACCCAGCTAA 57.030 33.333 2.11 0.00 31.18 3.09
4436 5918 4.446994 AATTAAGCCAAAGAAGCTCTGC 57.553 40.909 0.00 0.00 40.49 4.26
4485 5968 4.494091 AGCTAAGATGGCTCTAGCAAAA 57.506 40.909 4.07 0.00 44.36 2.44
4513 5996 3.441222 TGCATAGGTCAGAACTTTGCATG 59.559 43.478 24.91 10.01 44.20 4.06
4519 6002 3.012518 GCACATGCATAGGTCAGAACTT 58.987 45.455 0.00 0.00 41.59 2.66
4602 6085 3.357166 TTCAACCCGGAAATGTTTTCG 57.643 42.857 0.73 0.00 38.86 3.46
4614 6097 1.705337 ATGCGAGCGAATTCAACCCG 61.705 55.000 6.22 0.66 0.00 5.28
4626 6109 0.810648 TTTGGTGGAATGATGCGAGC 59.189 50.000 0.00 0.00 0.00 5.03
4640 6123 1.007479 ACCATGATCCCAGCATTTGGT 59.993 47.619 0.00 0.00 46.25 3.67
4642 6125 2.380941 TCACCATGATCCCAGCATTTG 58.619 47.619 0.00 0.00 0.00 2.32
4647 6130 2.353357 TCATTCACCATGATCCCAGC 57.647 50.000 0.00 0.00 36.94 4.85
4648 6131 4.160642 TCTTCATTCACCATGATCCCAG 57.839 45.455 0.00 0.00 41.82 4.45
4668 6151 0.824759 ACCTTCTAGTGCCCACGATC 59.175 55.000 0.00 0.00 36.20 3.69
4696 6179 1.048601 GAGGGCATCACTTATCCGGA 58.951 55.000 6.61 6.61 0.00 5.14
4706 6189 3.347216 GAAGTAAAGCTTGAGGGCATCA 58.653 45.455 0.00 0.00 37.59 3.07
4707 6190 2.685388 GGAAGTAAAGCTTGAGGGCATC 59.315 50.000 0.00 0.00 37.59 3.91
4714 6197 7.224297 AGAACATACAAGGAAGTAAAGCTTGA 58.776 34.615 0.00 0.00 37.59 3.02
4719 6202 6.595716 CCAGGAGAACATACAAGGAAGTAAAG 59.404 42.308 0.00 0.00 0.00 1.85
4725 6208 5.546499 ACTTACCAGGAGAACATACAAGGAA 59.454 40.000 0.00 0.00 0.00 3.36
4792 6275 0.601576 TGACAACATACGCGCCAAGT 60.602 50.000 5.73 0.00 0.00 3.16
4793 6276 0.095245 CTGACAACATACGCGCCAAG 59.905 55.000 5.73 0.00 0.00 3.61
4794 6277 1.295357 CCTGACAACATACGCGCCAA 61.295 55.000 5.73 0.00 0.00 4.52
4795 6278 1.739929 CCTGACAACATACGCGCCA 60.740 57.895 5.73 0.00 0.00 5.69
4796 6279 1.296056 AACCTGACAACATACGCGCC 61.296 55.000 5.73 0.00 0.00 6.53
4797 6280 0.179225 CAACCTGACAACATACGCGC 60.179 55.000 5.73 0.00 0.00 6.86
4798 6281 1.424403 TCAACCTGACAACATACGCG 58.576 50.000 3.53 3.53 0.00 6.01
4799 6282 2.476185 GCATCAACCTGACAACATACGC 60.476 50.000 0.00 0.00 0.00 4.42
4800 6283 2.741517 TGCATCAACCTGACAACATACG 59.258 45.455 0.00 0.00 0.00 3.06
4801 6284 4.475944 GTTGCATCAACCTGACAACATAC 58.524 43.478 0.00 0.00 40.20 2.39
4802 6285 4.764679 GTTGCATCAACCTGACAACATA 57.235 40.909 0.00 0.00 40.20 2.29
4803 6286 3.648339 GTTGCATCAACCTGACAACAT 57.352 42.857 0.00 0.00 40.20 2.71
4813 6296 4.072131 TGAGGTTCTTAGGTTGCATCAAC 58.928 43.478 1.33 1.33 42.89 3.18
4814 6297 4.365514 TGAGGTTCTTAGGTTGCATCAA 57.634 40.909 0.00 0.00 0.00 2.57
4815 6298 4.574674 ATGAGGTTCTTAGGTTGCATCA 57.425 40.909 0.00 0.00 0.00 3.07
4816 6299 8.677148 TTTATATGAGGTTCTTAGGTTGCATC 57.323 34.615 0.00 0.00 0.00 3.91
4817 6300 9.646522 ATTTTATATGAGGTTCTTAGGTTGCAT 57.353 29.630 0.00 0.00 0.00 3.96
4818 6301 9.120538 GATTTTATATGAGGTTCTTAGGTTGCA 57.879 33.333 0.00 0.00 0.00 4.08
4865 6348 7.339721 TGTTGTCCTAATGTTGAGGTTTTTGTA 59.660 33.333 0.00 0.00 35.40 2.41
4885 6368 9.944663 TGTTTTACATCTTTAATGAGTGTTGTC 57.055 29.630 9.83 0.00 0.00 3.18
4961 6444 2.571212 ACGTGCTCATCTTTGTTTCCA 58.429 42.857 0.00 0.00 0.00 3.53
4962 6445 4.742438 TTACGTGCTCATCTTTGTTTCC 57.258 40.909 0.00 0.00 0.00 3.13
5026 6509 3.251972 GCACTGCACTTCTTTAGCTCTTT 59.748 43.478 0.00 0.00 0.00 2.52
5033 6516 1.603802 GCACTGCACTGCACTTCTTTA 59.396 47.619 12.77 0.00 37.11 1.85
5038 6521 1.895707 GAGGCACTGCACTGCACTT 60.896 57.895 18.28 5.11 41.55 3.16
5039 6522 2.281345 GAGGCACTGCACTGCACT 60.281 61.111 18.28 12.95 41.55 4.40
5040 6523 2.188829 TTGAGGCACTGCACTGCAC 61.189 57.895 18.28 12.33 41.55 4.57
5041 6524 2.188829 GTTGAGGCACTGCACTGCA 61.189 57.895 18.28 3.11 41.55 4.41
5042 6525 0.603707 TAGTTGAGGCACTGCACTGC 60.604 55.000 9.59 9.59 41.55 4.40
5043 6526 1.802960 CTTAGTTGAGGCACTGCACTG 59.197 52.381 2.82 0.00 41.55 3.66
5044 6527 1.417890 ACTTAGTTGAGGCACTGCACT 59.582 47.619 2.82 0.20 41.55 4.40
5045 6528 1.532868 CACTTAGTTGAGGCACTGCAC 59.467 52.381 2.82 0.00 41.55 4.57
5046 6529 1.882912 CACTTAGTTGAGGCACTGCA 58.117 50.000 2.82 0.00 41.55 4.41
5047 6530 0.519077 GCACTTAGTTGAGGCACTGC 59.481 55.000 0.00 0.00 41.55 4.40
5048 6531 1.802960 CTGCACTTAGTTGAGGCACTG 59.197 52.381 0.00 0.00 41.55 3.66
5050 6533 1.532868 CACTGCACTTAGTTGAGGCAC 59.467 52.381 0.00 0.00 0.00 5.01
5051 6534 1.882912 CACTGCACTTAGTTGAGGCA 58.117 50.000 0.00 0.00 0.00 4.75
5052 6535 0.519077 GCACTGCACTTAGTTGAGGC 59.481 55.000 0.00 0.00 0.00 4.70
5053 6536 1.802960 CTGCACTGCACTTAGTTGAGG 59.197 52.381 0.00 0.00 33.79 3.86
5054 6537 2.222678 CACTGCACTGCACTTAGTTGAG 59.777 50.000 0.00 0.00 33.79 3.02
5055 6538 2.212652 CACTGCACTGCACTTAGTTGA 58.787 47.619 0.00 0.00 33.79 3.18
5056 6539 1.334419 GCACTGCACTGCACTTAGTTG 60.334 52.381 12.77 0.00 37.11 3.16
5057 6540 0.947244 GCACTGCACTGCACTTAGTT 59.053 50.000 12.77 0.00 37.11 2.24
5058 6541 0.886490 GGCACTGCACTGCACTTAGT 60.886 55.000 18.28 0.00 39.08 2.24
5059 6542 1.580845 GGGCACTGCACTGCACTTAG 61.581 60.000 18.28 0.00 37.61 2.18
5060 6543 1.600636 GGGCACTGCACTGCACTTA 60.601 57.895 18.28 0.00 37.61 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.