Multiple sequence alignment - TraesCS2D01G505500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G505500 chr2D 100.000 2315 0 0 1 2315 599796019 599798333 0.000000e+00 4276.0
1 TraesCS2D01G505500 chr2D 85.600 250 25 7 1467 1715 527496679 527496918 3.820000e-63 252.0
2 TraesCS2D01G505500 chr2D 87.619 105 11 2 138 241 583241956 583242059 1.120000e-23 121.0
3 TraesCS2D01G505500 chr2D 86.538 104 14 0 138 241 598718651 598718754 5.230000e-22 115.0
4 TraesCS2D01G505500 chr2B 88.581 1156 68 28 356 1467 729139728 729140863 0.000000e+00 1345.0
5 TraesCS2D01G505500 chr2B 78.141 796 114 26 1470 2213 394150393 394149606 3.510000e-123 451.0
6 TraesCS2D01G505500 chr2B 77.255 510 78 18 1836 2315 764670292 764670793 4.900000e-67 265.0
7 TraesCS2D01G505500 chr2B 85.507 138 19 1 1 137 664345116 664345253 2.400000e-30 143.0
8 TraesCS2D01G505500 chr2B 73.934 422 76 18 1772 2163 262934452 262934035 3.100000e-29 139.0
9 TraesCS2D01G505500 chr2B 86.047 86 10 2 237 321 196964721 196964805 8.810000e-15 91.6
10 TraesCS2D01G505500 chr2A 88.259 988 53 23 500 1467 733530186 733531130 0.000000e+00 1123.0
11 TraesCS2D01G505500 chr2A 79.778 900 117 27 1467 2315 398856378 398857263 5.510000e-166 593.0
12 TraesCS2D01G505500 chr2A 79.710 897 117 27 1470 2315 398459192 398458310 2.560000e-164 588.0
13 TraesCS2D01G505500 chr2A 91.781 73 2 4 255 325 500525527 500525457 5.260000e-17 99.0
14 TraesCS2D01G505500 chr2A 91.667 72 4 2 255 325 500525984 500525914 5.260000e-17 99.0
15 TraesCS2D01G505500 chr2A 87.059 85 8 3 237 320 27947699 27947781 2.450000e-15 93.5
16 TraesCS2D01G505500 chr4D 79.645 845 127 25 1503 2315 432988256 432987425 1.200000e-157 566.0
17 TraesCS2D01G505500 chr4D 78.628 627 86 29 1719 2315 323112155 323111547 2.810000e-99 372.0
18 TraesCS2D01G505500 chr4D 86.111 252 29 3 1466 1715 11149108 11148861 1.360000e-67 267.0
19 TraesCS2D01G505500 chr4D 87.379 103 13 0 138 240 21135891 21135993 4.040000e-23 119.0
20 TraesCS2D01G505500 chr7A 80.096 623 91 19 1720 2313 121934254 121934872 1.270000e-117 433.0
21 TraesCS2D01G505500 chr7A 87.850 107 12 1 135 241 631370436 631370541 8.680000e-25 124.0
22 TraesCS2D01G505500 chr3D 76.739 920 115 37 1465 2315 359682066 359681177 2.750000e-114 422.0
23 TraesCS2D01G505500 chr3D 80.069 291 52 5 1720 2006 508162832 508163120 6.480000e-51 211.0
24 TraesCS2D01G505500 chr3D 95.588 68 3 0 255 322 608544649 608544582 2.430000e-20 110.0
25 TraesCS2D01G505500 chr5D 79.487 624 95 15 1720 2315 527145169 527145787 1.660000e-111 412.0
26 TraesCS2D01G505500 chr5D 88.571 105 10 2 138 241 362889533 362889430 2.410000e-25 126.0
27 TraesCS2D01G505500 chr3A 80.531 565 72 23 1722 2258 36082144 36082698 1.290000e-107 399.0
28 TraesCS2D01G505500 chr3A 86.131 137 15 4 3 136 9477771 9477906 6.670000e-31 145.0
29 TraesCS2D01G505500 chr3A 94.118 68 3 1 255 322 217823550 217823484 4.070000e-18 102.0
30 TraesCS2D01G505500 chr7D 76.684 772 115 41 1521 2248 24822703 24823453 3.630000e-98 368.0
31 TraesCS2D01G505500 chr7D 77.673 636 95 21 1719 2315 160427542 160428169 6.120000e-91 344.0
32 TraesCS2D01G505500 chr7D 81.994 311 49 7 2009 2315 539765954 539766261 8.210000e-65 257.0
33 TraesCS2D01G505500 chr7D 84.375 256 32 4 1463 1715 589242546 589242296 6.390000e-61 244.0
34 TraesCS2D01G505500 chr7D 87.075 147 17 2 4 149 600278187 600278332 5.120000e-37 165.0
35 TraesCS2D01G505500 chr7D 85.981 107 15 0 135 241 80325151 80325257 5.230000e-22 115.0
36 TraesCS2D01G505500 chr5B 77.760 643 105 20 1701 2315 707157881 707157249 6.080000e-96 361.0
37 TraesCS2D01G505500 chr7B 78.130 631 93 28 1719 2315 99138317 99137698 2.190000e-95 359.0
38 TraesCS2D01G505500 chr7B 77.849 623 87 31 1719 2314 707611783 707611185 2.850000e-89 339.0
39 TraesCS2D01G505500 chr7B 77.893 579 83 23 1720 2262 748714661 748714092 3.710000e-83 318.0
40 TraesCS2D01G505500 chr7B 87.943 141 12 4 1 138 49370159 49370021 6.620000e-36 161.0
41 TraesCS2D01G505500 chr7B 87.059 85 9 2 237 321 239366136 239366054 6.810000e-16 95.3
42 TraesCS2D01G505500 chr6D 78.373 541 96 13 1788 2315 11444426 11443894 4.770000e-87 331.0
43 TraesCS2D01G505500 chr6D 77.244 624 103 20 1720 2315 7245358 7244746 1.710000e-86 329.0
44 TraesCS2D01G505500 chr5A 79.614 466 61 10 1720 2158 567530094 567530552 1.040000e-78 303.0
45 TraesCS2D01G505500 chr5A 76.023 513 75 18 1838 2315 687950998 687951497 2.990000e-54 222.0
46 TraesCS2D01G505500 chr5A 86.538 104 14 0 138 241 18479691 18479588 5.230000e-22 115.0
47 TraesCS2D01G505500 chr1D 85.657 251 27 5 1458 1707 240984804 240985046 2.950000e-64 255.0
48 TraesCS2D01G505500 chr1D 75.965 570 93 26 1786 2315 7481170 7481735 1.060000e-63 254.0
49 TraesCS2D01G505500 chr1D 85.830 247 26 5 1470 1713 119296237 119296477 1.060000e-63 254.0
50 TraesCS2D01G505500 chr1D 87.619 105 11 2 138 241 321137246 321137143 1.120000e-23 121.0
51 TraesCS2D01G505500 chr6A 85.098 255 30 5 1465 1716 2937856 2938105 1.060000e-63 254.0
52 TraesCS2D01G505500 chr6A 86.207 203 26 2 1720 1921 593282995 593282794 3.870000e-53 219.0
53 TraesCS2D01G505500 chr1A 85.892 241 24 5 1467 1707 305605030 305605260 4.940000e-62 248.0
54 TraesCS2D01G505500 chr3B 81.350 311 51 7 2009 2315 78593593 78593900 1.780000e-61 246.0
55 TraesCS2D01G505500 chr3B 84.173 139 21 1 1 138 769393102 769392964 1.440000e-27 134.0
56 TraesCS2D01G505500 chr3B 86.207 87 8 4 237 322 769379430 769379513 8.810000e-15 91.6
57 TraesCS2D01G505500 chr3B 86.207 87 8 4 237 322 769380474 769380557 8.810000e-15 91.6
58 TraesCS2D01G505500 chr1B 81.788 302 37 11 1713 2013 661856280 661856564 1.070000e-58 237.0
59 TraesCS2D01G505500 chr6B 86.331 139 13 4 1 135 634913728 634913592 1.850000e-31 147.0
60 TraesCS2D01G505500 chr6B 84.672 137 19 2 1 137 580308111 580307977 4.010000e-28 135.0
61 TraesCS2D01G505500 chrUn 84.058 138 21 1 1 137 245538953 245538816 5.190000e-27 132.0
62 TraesCS2D01G505500 chrUn 83.333 138 22 1 1 137 71537306 71537443 2.410000e-25 126.0
63 TraesCS2D01G505500 chr4A 86.667 105 12 2 138 241 384054771 384054668 5.230000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G505500 chr2D 599796019 599798333 2314 False 4276 4276 100.000 1 2315 1 chr2D.!!$F4 2314
1 TraesCS2D01G505500 chr2B 729139728 729140863 1135 False 1345 1345 88.581 356 1467 1 chr2B.!!$F3 1111
2 TraesCS2D01G505500 chr2B 394149606 394150393 787 True 451 451 78.141 1470 2213 1 chr2B.!!$R2 743
3 TraesCS2D01G505500 chr2B 764670292 764670793 501 False 265 265 77.255 1836 2315 1 chr2B.!!$F4 479
4 TraesCS2D01G505500 chr2A 733530186 733531130 944 False 1123 1123 88.259 500 1467 1 chr2A.!!$F3 967
5 TraesCS2D01G505500 chr2A 398856378 398857263 885 False 593 593 79.778 1467 2315 1 chr2A.!!$F2 848
6 TraesCS2D01G505500 chr2A 398458310 398459192 882 True 588 588 79.710 1470 2315 1 chr2A.!!$R1 845
7 TraesCS2D01G505500 chr4D 432987425 432988256 831 True 566 566 79.645 1503 2315 1 chr4D.!!$R3 812
8 TraesCS2D01G505500 chr4D 323111547 323112155 608 True 372 372 78.628 1719 2315 1 chr4D.!!$R2 596
9 TraesCS2D01G505500 chr7A 121934254 121934872 618 False 433 433 80.096 1720 2313 1 chr7A.!!$F1 593
10 TraesCS2D01G505500 chr3D 359681177 359682066 889 True 422 422 76.739 1465 2315 1 chr3D.!!$R1 850
11 TraesCS2D01G505500 chr5D 527145169 527145787 618 False 412 412 79.487 1720 2315 1 chr5D.!!$F1 595
12 TraesCS2D01G505500 chr3A 36082144 36082698 554 False 399 399 80.531 1722 2258 1 chr3A.!!$F2 536
13 TraesCS2D01G505500 chr7D 24822703 24823453 750 False 368 368 76.684 1521 2248 1 chr7D.!!$F1 727
14 TraesCS2D01G505500 chr7D 160427542 160428169 627 False 344 344 77.673 1719 2315 1 chr7D.!!$F3 596
15 TraesCS2D01G505500 chr5B 707157249 707157881 632 True 361 361 77.760 1701 2315 1 chr5B.!!$R1 614
16 TraesCS2D01G505500 chr7B 99137698 99138317 619 True 359 359 78.130 1719 2315 1 chr7B.!!$R2 596
17 TraesCS2D01G505500 chr7B 707611185 707611783 598 True 339 339 77.849 1719 2314 1 chr7B.!!$R4 595
18 TraesCS2D01G505500 chr7B 748714092 748714661 569 True 318 318 77.893 1720 2262 1 chr7B.!!$R5 542
19 TraesCS2D01G505500 chr6D 11443894 11444426 532 True 331 331 78.373 1788 2315 1 chr6D.!!$R2 527
20 TraesCS2D01G505500 chr6D 7244746 7245358 612 True 329 329 77.244 1720 2315 1 chr6D.!!$R1 595
21 TraesCS2D01G505500 chr1D 7481170 7481735 565 False 254 254 75.965 1786 2315 1 chr1D.!!$F1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 0.031857 CTAGGGTGCAGATGAGCTCG 59.968 60.0 9.64 0.0 34.99 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1766 1868 0.823769 CGATCATCTCCCTCACCCGA 60.824 60.0 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.839051 GAAAAATGGAGCAGACCTCAC 57.161 47.619 0.00 0.00 42.62 3.51
21 22 1.813513 AAAATGGAGCAGACCTCACG 58.186 50.000 0.00 0.00 42.62 4.35
22 23 0.674895 AAATGGAGCAGACCTCACGC 60.675 55.000 0.00 0.00 42.62 5.34
23 24 1.830587 AATGGAGCAGACCTCACGCA 61.831 55.000 0.00 0.00 42.62 5.24
24 25 1.620739 ATGGAGCAGACCTCACGCAT 61.621 55.000 0.00 0.00 42.62 4.73
25 26 1.520342 GGAGCAGACCTCACGCATC 60.520 63.158 0.00 0.00 42.62 3.91
26 27 1.216444 GAGCAGACCTCACGCATCA 59.784 57.895 0.00 0.00 40.45 3.07
27 28 0.390340 GAGCAGACCTCACGCATCAA 60.390 55.000 0.00 0.00 40.45 2.57
28 29 0.035317 AGCAGACCTCACGCATCAAA 59.965 50.000 0.00 0.00 0.00 2.69
29 30 1.089920 GCAGACCTCACGCATCAAAT 58.910 50.000 0.00 0.00 0.00 2.32
30 31 1.470098 GCAGACCTCACGCATCAAATT 59.530 47.619 0.00 0.00 0.00 1.82
31 32 2.730090 GCAGACCTCACGCATCAAATTG 60.730 50.000 0.00 0.00 0.00 2.32
32 33 2.485426 CAGACCTCACGCATCAAATTGT 59.515 45.455 0.00 0.00 0.00 2.71
33 34 2.744202 AGACCTCACGCATCAAATTGTC 59.256 45.455 0.00 0.00 0.00 3.18
34 35 2.744202 GACCTCACGCATCAAATTGTCT 59.256 45.455 0.00 0.00 0.00 3.41
35 36 3.932710 GACCTCACGCATCAAATTGTCTA 59.067 43.478 0.00 0.00 0.00 2.59
36 37 3.684788 ACCTCACGCATCAAATTGTCTAC 59.315 43.478 0.00 0.00 0.00 2.59
37 38 3.063997 CCTCACGCATCAAATTGTCTACC 59.936 47.826 0.00 0.00 0.00 3.18
38 39 3.669536 TCACGCATCAAATTGTCTACCA 58.330 40.909 0.00 0.00 0.00 3.25
39 40 3.435327 TCACGCATCAAATTGTCTACCAC 59.565 43.478 0.00 0.00 0.00 4.16
40 41 3.188254 CACGCATCAAATTGTCTACCACA 59.812 43.478 0.00 0.00 0.00 4.17
41 42 3.188460 ACGCATCAAATTGTCTACCACAC 59.812 43.478 0.00 0.00 33.41 3.82
42 43 3.188254 CGCATCAAATTGTCTACCACACA 59.812 43.478 0.00 0.00 33.41 3.72
43 44 4.475944 GCATCAAATTGTCTACCACACAC 58.524 43.478 0.00 0.00 33.41 3.82
44 45 4.023279 GCATCAAATTGTCTACCACACACA 60.023 41.667 0.00 0.00 33.41 3.72
45 46 5.507149 GCATCAAATTGTCTACCACACACAA 60.507 40.000 0.00 0.00 33.41 3.33
46 47 6.502652 CATCAAATTGTCTACCACACACAAA 58.497 36.000 0.00 0.00 33.41 2.83
47 48 6.516739 TCAAATTGTCTACCACACACAAAA 57.483 33.333 0.00 0.00 33.41 2.44
48 49 6.925211 TCAAATTGTCTACCACACACAAAAA 58.075 32.000 0.00 0.00 33.41 1.94
106 107 2.356665 TTTTTGTCAGCTAGGGTGCA 57.643 45.000 0.00 0.00 34.99 4.57
107 108 1.896220 TTTTGTCAGCTAGGGTGCAG 58.104 50.000 0.00 0.00 34.99 4.41
108 109 1.055849 TTTGTCAGCTAGGGTGCAGA 58.944 50.000 0.00 0.00 34.99 4.26
109 110 1.279496 TTGTCAGCTAGGGTGCAGAT 58.721 50.000 0.00 0.00 31.49 2.90
110 111 0.538584 TGTCAGCTAGGGTGCAGATG 59.461 55.000 0.00 0.00 31.49 2.90
111 112 0.826715 GTCAGCTAGGGTGCAGATGA 59.173 55.000 0.00 0.00 36.15 2.92
112 113 1.117994 TCAGCTAGGGTGCAGATGAG 58.882 55.000 0.00 0.00 33.71 2.90
113 114 0.532417 CAGCTAGGGTGCAGATGAGC 60.532 60.000 0.00 0.00 30.98 4.26
114 115 0.690411 AGCTAGGGTGCAGATGAGCT 60.690 55.000 7.18 7.18 35.48 4.09
115 116 0.249826 GCTAGGGTGCAGATGAGCTC 60.250 60.000 6.82 6.82 34.99 4.09
116 117 0.031857 CTAGGGTGCAGATGAGCTCG 59.968 60.000 9.64 0.00 34.99 5.03
117 118 0.395724 TAGGGTGCAGATGAGCTCGA 60.396 55.000 9.64 0.00 34.99 4.04
118 119 1.227205 GGGTGCAGATGAGCTCGAG 60.227 63.158 8.45 8.45 34.99 4.04
119 120 1.515020 GGTGCAGATGAGCTCGAGT 59.485 57.895 15.13 0.23 34.99 4.18
120 121 0.805322 GGTGCAGATGAGCTCGAGTG 60.805 60.000 15.13 6.93 34.99 3.51
121 122 1.153686 TGCAGATGAGCTCGAGTGC 60.154 57.895 21.12 21.12 34.99 4.40
122 123 1.153686 GCAGATGAGCTCGAGTGCA 60.154 57.895 22.34 12.71 34.99 4.57
123 124 1.146957 GCAGATGAGCTCGAGTGCAG 61.147 60.000 22.34 6.15 34.99 4.41
124 125 0.455005 CAGATGAGCTCGAGTGCAGA 59.545 55.000 15.13 0.00 34.99 4.26
125 126 0.740149 AGATGAGCTCGAGTGCAGAG 59.260 55.000 15.13 0.00 38.68 3.35
126 127 0.737804 GATGAGCTCGAGTGCAGAGA 59.262 55.000 15.13 0.00 37.93 3.10
127 128 1.337703 GATGAGCTCGAGTGCAGAGAT 59.662 52.381 15.13 0.00 37.93 2.75
128 129 0.455005 TGAGCTCGAGTGCAGAGATG 59.545 55.000 15.13 0.00 37.93 2.90
129 130 0.248990 GAGCTCGAGTGCAGAGATGG 60.249 60.000 15.13 0.00 37.93 3.51
130 131 0.682532 AGCTCGAGTGCAGAGATGGA 60.683 55.000 15.13 0.00 37.93 3.41
131 132 0.388659 GCTCGAGTGCAGAGATGGAT 59.611 55.000 15.13 0.00 37.93 3.41
132 133 1.202510 GCTCGAGTGCAGAGATGGATT 60.203 52.381 15.13 0.00 37.93 3.01
133 134 2.741228 GCTCGAGTGCAGAGATGGATTT 60.741 50.000 15.13 0.00 37.93 2.17
134 135 3.529533 CTCGAGTGCAGAGATGGATTTT 58.470 45.455 3.62 0.00 37.93 1.82
135 136 3.525537 TCGAGTGCAGAGATGGATTTTC 58.474 45.455 0.00 0.00 0.00 2.29
136 137 2.283617 CGAGTGCAGAGATGGATTTTCG 59.716 50.000 0.00 0.00 0.00 3.46
137 138 3.525537 GAGTGCAGAGATGGATTTTCGA 58.474 45.455 0.00 0.00 0.00 3.71
138 139 3.265791 AGTGCAGAGATGGATTTTCGAC 58.734 45.455 0.00 0.00 0.00 4.20
139 140 3.055530 AGTGCAGAGATGGATTTTCGACT 60.056 43.478 0.00 0.00 0.00 4.18
140 141 3.686726 GTGCAGAGATGGATTTTCGACTT 59.313 43.478 0.00 0.00 0.00 3.01
141 142 3.935203 TGCAGAGATGGATTTTCGACTTC 59.065 43.478 0.00 0.00 0.00 3.01
142 143 4.187694 GCAGAGATGGATTTTCGACTTCT 58.812 43.478 0.00 0.00 0.00 2.85
143 144 5.105351 TGCAGAGATGGATTTTCGACTTCTA 60.105 40.000 0.00 0.00 0.00 2.10
144 145 5.988561 GCAGAGATGGATTTTCGACTTCTAT 59.011 40.000 0.00 0.00 0.00 1.98
145 146 6.073873 GCAGAGATGGATTTTCGACTTCTATG 60.074 42.308 6.29 6.29 33.44 2.23
146 147 6.983307 CAGAGATGGATTTTCGACTTCTATGT 59.017 38.462 0.00 0.00 0.00 2.29
147 148 7.493971 CAGAGATGGATTTTCGACTTCTATGTT 59.506 37.037 0.00 0.00 0.00 2.71
148 149 8.043710 AGAGATGGATTTTCGACTTCTATGTTT 58.956 33.333 0.00 0.00 0.00 2.83
149 150 8.202745 AGATGGATTTTCGACTTCTATGTTTC 57.797 34.615 0.00 0.00 0.00 2.78
150 151 7.824289 AGATGGATTTTCGACTTCTATGTTTCA 59.176 33.333 0.00 0.00 0.00 2.69
151 152 7.364522 TGGATTTTCGACTTCTATGTTTCAG 57.635 36.000 0.00 0.00 0.00 3.02
152 153 6.934645 TGGATTTTCGACTTCTATGTTTCAGT 59.065 34.615 0.00 0.00 0.00 3.41
153 154 7.444183 TGGATTTTCGACTTCTATGTTTCAGTT 59.556 33.333 0.00 0.00 0.00 3.16
154 155 8.290325 GGATTTTCGACTTCTATGTTTCAGTTT 58.710 33.333 0.00 0.00 0.00 2.66
155 156 9.107367 GATTTTCGACTTCTATGTTTCAGTTTG 57.893 33.333 0.00 0.00 0.00 2.93
156 157 7.548196 TTTCGACTTCTATGTTTCAGTTTGT 57.452 32.000 0.00 0.00 0.00 2.83
157 158 8.651391 TTTCGACTTCTATGTTTCAGTTTGTA 57.349 30.769 0.00 0.00 0.00 2.41
158 159 7.869016 TCGACTTCTATGTTTCAGTTTGTAG 57.131 36.000 0.00 0.00 0.00 2.74
159 160 7.654568 TCGACTTCTATGTTTCAGTTTGTAGA 58.345 34.615 0.00 0.00 0.00 2.59
160 161 8.139350 TCGACTTCTATGTTTCAGTTTGTAGAA 58.861 33.333 0.00 0.00 0.00 2.10
161 162 8.761497 CGACTTCTATGTTTCAGTTTGTAGAAA 58.239 33.333 0.00 0.00 30.47 2.52
163 164 8.560374 ACTTCTATGTTTCAGTTTGTAGAAAGC 58.440 33.333 0.00 0.00 34.69 3.51
164 165 7.435068 TCTATGTTTCAGTTTGTAGAAAGCC 57.565 36.000 0.00 0.00 34.69 4.35
165 166 4.911514 TGTTTCAGTTTGTAGAAAGCCC 57.088 40.909 0.00 0.00 34.69 5.19
166 167 4.532834 TGTTTCAGTTTGTAGAAAGCCCT 58.467 39.130 0.00 0.00 34.69 5.19
167 168 4.578928 TGTTTCAGTTTGTAGAAAGCCCTC 59.421 41.667 0.00 0.00 34.69 4.30
168 169 4.706842 TTCAGTTTGTAGAAAGCCCTCT 57.293 40.909 0.00 0.00 0.00 3.69
169 170 5.818678 TTCAGTTTGTAGAAAGCCCTCTA 57.181 39.130 0.00 0.00 0.00 2.43
170 171 5.407407 TCAGTTTGTAGAAAGCCCTCTAG 57.593 43.478 0.00 0.00 0.00 2.43
171 172 4.838986 TCAGTTTGTAGAAAGCCCTCTAGT 59.161 41.667 0.00 0.00 0.00 2.57
172 173 6.014647 TCAGTTTGTAGAAAGCCCTCTAGTA 58.985 40.000 0.00 0.00 0.00 1.82
173 174 6.668283 TCAGTTTGTAGAAAGCCCTCTAGTAT 59.332 38.462 0.00 0.00 0.00 2.12
174 175 6.981559 CAGTTTGTAGAAAGCCCTCTAGTATC 59.018 42.308 0.00 0.00 0.00 2.24
175 176 6.898521 AGTTTGTAGAAAGCCCTCTAGTATCT 59.101 38.462 0.00 0.00 0.00 1.98
176 177 7.400627 AGTTTGTAGAAAGCCCTCTAGTATCTT 59.599 37.037 0.00 0.00 0.00 2.40
177 178 6.716934 TGTAGAAAGCCCTCTAGTATCTTG 57.283 41.667 0.00 0.00 0.00 3.02
178 179 6.432581 TGTAGAAAGCCCTCTAGTATCTTGA 58.567 40.000 0.00 0.00 0.00 3.02
179 180 6.895756 TGTAGAAAGCCCTCTAGTATCTTGAA 59.104 38.462 0.00 0.00 0.00 2.69
180 181 6.875972 AGAAAGCCCTCTAGTATCTTGAAA 57.124 37.500 0.00 0.00 0.00 2.69
181 182 6.645306 AGAAAGCCCTCTAGTATCTTGAAAC 58.355 40.000 0.00 0.00 0.00 2.78
182 183 6.442244 AGAAAGCCCTCTAGTATCTTGAAACT 59.558 38.462 0.00 0.00 0.00 2.66
183 184 7.620094 AGAAAGCCCTCTAGTATCTTGAAACTA 59.380 37.037 0.00 0.00 0.00 2.24
184 185 7.735326 AAGCCCTCTAGTATCTTGAAACTAA 57.265 36.000 0.00 0.00 0.00 2.24
185 186 7.114866 AGCCCTCTAGTATCTTGAAACTAAC 57.885 40.000 0.00 0.00 0.00 2.34
186 187 6.098552 AGCCCTCTAGTATCTTGAAACTAACC 59.901 42.308 0.00 0.00 0.00 2.85
187 188 6.127140 GCCCTCTAGTATCTTGAAACTAACCA 60.127 42.308 0.00 0.00 0.00 3.67
188 189 7.266400 CCCTCTAGTATCTTGAAACTAACCAC 58.734 42.308 0.00 0.00 0.00 4.16
189 190 7.093465 CCCTCTAGTATCTTGAAACTAACCACA 60.093 40.741 0.00 0.00 0.00 4.17
190 191 8.478877 CCTCTAGTATCTTGAAACTAACCACAT 58.521 37.037 0.00 0.00 0.00 3.21
191 192 9.522804 CTCTAGTATCTTGAAACTAACCACATC 57.477 37.037 0.00 0.00 0.00 3.06
192 193 8.475639 TCTAGTATCTTGAAACTAACCACATCC 58.524 37.037 0.00 0.00 0.00 3.51
193 194 6.415573 AGTATCTTGAAACTAACCACATCCC 58.584 40.000 0.00 0.00 0.00 3.85
194 195 4.993705 TCTTGAAACTAACCACATCCCT 57.006 40.909 0.00 0.00 0.00 4.20
195 196 4.906618 TCTTGAAACTAACCACATCCCTC 58.093 43.478 0.00 0.00 0.00 4.30
196 197 3.713826 TGAAACTAACCACATCCCTCC 57.286 47.619 0.00 0.00 0.00 4.30
197 198 2.307686 TGAAACTAACCACATCCCTCCC 59.692 50.000 0.00 0.00 0.00 4.30
198 199 2.361085 AACTAACCACATCCCTCCCT 57.639 50.000 0.00 0.00 0.00 4.20
199 200 1.880941 ACTAACCACATCCCTCCCTC 58.119 55.000 0.00 0.00 0.00 4.30
200 201 1.080498 ACTAACCACATCCCTCCCTCA 59.920 52.381 0.00 0.00 0.00 3.86
201 202 1.486726 CTAACCACATCCCTCCCTCAC 59.513 57.143 0.00 0.00 0.00 3.51
202 203 1.208165 AACCACATCCCTCCCTCACC 61.208 60.000 0.00 0.00 0.00 4.02
203 204 1.307343 CCACATCCCTCCCTCACCT 60.307 63.158 0.00 0.00 0.00 4.00
204 205 1.341156 CCACATCCCTCCCTCACCTC 61.341 65.000 0.00 0.00 0.00 3.85
205 206 0.618680 CACATCCCTCCCTCACCTCA 60.619 60.000 0.00 0.00 0.00 3.86
206 207 0.344790 ACATCCCTCCCTCACCTCAT 59.655 55.000 0.00 0.00 0.00 2.90
207 208 1.055040 CATCCCTCCCTCACCTCATC 58.945 60.000 0.00 0.00 0.00 2.92
208 209 0.644380 ATCCCTCCCTCACCTCATCA 59.356 55.000 0.00 0.00 0.00 3.07
209 210 0.417437 TCCCTCCCTCACCTCATCAA 59.583 55.000 0.00 0.00 0.00 2.57
210 211 1.203428 TCCCTCCCTCACCTCATCAAA 60.203 52.381 0.00 0.00 0.00 2.69
211 212 1.635487 CCCTCCCTCACCTCATCAAAA 59.365 52.381 0.00 0.00 0.00 2.44
212 213 2.619074 CCCTCCCTCACCTCATCAAAAC 60.619 54.545 0.00 0.00 0.00 2.43
213 214 2.040278 CCTCCCTCACCTCATCAAAACA 59.960 50.000 0.00 0.00 0.00 2.83
214 215 3.341823 CTCCCTCACCTCATCAAAACAG 58.658 50.000 0.00 0.00 0.00 3.16
215 216 2.711009 TCCCTCACCTCATCAAAACAGT 59.289 45.455 0.00 0.00 0.00 3.55
216 217 3.138283 TCCCTCACCTCATCAAAACAGTT 59.862 43.478 0.00 0.00 0.00 3.16
217 218 3.503748 CCCTCACCTCATCAAAACAGTTC 59.496 47.826 0.00 0.00 0.00 3.01
218 219 4.136796 CCTCACCTCATCAAAACAGTTCA 58.863 43.478 0.00 0.00 0.00 3.18
219 220 4.580167 CCTCACCTCATCAAAACAGTTCAA 59.420 41.667 0.00 0.00 0.00 2.69
220 221 5.278169 CCTCACCTCATCAAAACAGTTCAAG 60.278 44.000 0.00 0.00 0.00 3.02
221 222 4.580167 TCACCTCATCAAAACAGTTCAAGG 59.420 41.667 0.00 0.00 0.00 3.61
222 223 4.580167 CACCTCATCAAAACAGTTCAAGGA 59.420 41.667 0.00 0.00 0.00 3.36
223 224 5.067674 CACCTCATCAAAACAGTTCAAGGAA 59.932 40.000 0.00 0.00 0.00 3.36
224 225 5.835280 ACCTCATCAAAACAGTTCAAGGAAT 59.165 36.000 0.00 0.00 0.00 3.01
225 226 7.004086 ACCTCATCAAAACAGTTCAAGGAATA 58.996 34.615 0.00 0.00 0.00 1.75
226 227 7.040409 ACCTCATCAAAACAGTTCAAGGAATAC 60.040 37.037 0.00 0.00 0.00 1.89
227 228 7.040478 CCTCATCAAAACAGTTCAAGGAATACA 60.040 37.037 0.00 0.00 0.00 2.29
228 229 8.408043 TCATCAAAACAGTTCAAGGAATACAT 57.592 30.769 0.00 0.00 0.00 2.29
229 230 8.859090 TCATCAAAACAGTTCAAGGAATACATT 58.141 29.630 0.00 0.00 0.00 2.71
230 231 9.480053 CATCAAAACAGTTCAAGGAATACATTT 57.520 29.630 0.00 0.00 0.00 2.32
232 233 9.311916 TCAAAACAGTTCAAGGAATACATTTTG 57.688 29.630 0.00 0.00 35.60 2.44
233 234 9.311916 CAAAACAGTTCAAGGAATACATTTTGA 57.688 29.630 0.00 0.00 36.08 2.69
234 235 9.533253 AAAACAGTTCAAGGAATACATTTTGAG 57.467 29.630 0.00 0.00 31.85 3.02
235 236 7.823745 ACAGTTCAAGGAATACATTTTGAGT 57.176 32.000 0.00 0.00 31.85 3.41
236 237 8.918202 ACAGTTCAAGGAATACATTTTGAGTA 57.082 30.769 0.00 0.00 31.85 2.59
237 238 9.349713 ACAGTTCAAGGAATACATTTTGAGTAA 57.650 29.630 0.00 0.00 31.85 2.24
250 251 8.238481 ACATTTTGAGTAAAACTTTGTGTGTG 57.762 30.769 0.00 0.00 38.50 3.82
251 252 7.870445 ACATTTTGAGTAAAACTTTGTGTGTGT 59.130 29.630 0.00 0.00 38.50 3.72
252 253 7.630470 TTTTGAGTAAAACTTTGTGTGTGTG 57.370 32.000 0.00 0.00 31.13 3.82
253 254 5.950758 TGAGTAAAACTTTGTGTGTGTGT 57.049 34.783 0.00 0.00 0.00 3.72
254 255 6.320494 TGAGTAAAACTTTGTGTGTGTGTT 57.680 33.333 0.00 0.00 0.00 3.32
255 256 6.740110 TGAGTAAAACTTTGTGTGTGTGTTT 58.260 32.000 0.00 0.00 33.04 2.83
256 257 7.203910 TGAGTAAAACTTTGTGTGTGTGTTTT 58.796 30.769 0.00 0.00 41.63 2.43
257 258 7.707035 TGAGTAAAACTTTGTGTGTGTGTTTTT 59.293 29.630 0.00 0.00 40.10 1.94
258 259 9.182933 GAGTAAAACTTTGTGTGTGTGTTTTTA 57.817 29.630 0.00 0.00 40.10 1.52
259 260 9.530633 AGTAAAACTTTGTGTGTGTGTTTTTAA 57.469 25.926 0.00 0.00 40.10 1.52
260 261 9.786224 GTAAAACTTTGTGTGTGTGTTTTTAAG 57.214 29.630 0.00 0.00 40.10 1.85
261 262 8.426881 AAAACTTTGTGTGTGTGTTTTTAAGT 57.573 26.923 0.00 0.00 37.49 2.24
262 263 8.426881 AAACTTTGTGTGTGTGTTTTTAAGTT 57.573 26.923 0.00 0.00 35.51 2.66
263 264 8.426881 AACTTTGTGTGTGTGTTTTTAAGTTT 57.573 26.923 0.00 0.00 31.41 2.66
264 265 7.846485 ACTTTGTGTGTGTGTTTTTAAGTTTG 58.154 30.769 0.00 0.00 0.00 2.93
265 266 7.492994 ACTTTGTGTGTGTGTTTTTAAGTTTGT 59.507 29.630 0.00 0.00 0.00 2.83
266 267 6.755461 TGTGTGTGTGTTTTTAAGTTTGTG 57.245 33.333 0.00 0.00 0.00 3.33
267 268 6.504398 TGTGTGTGTGTTTTTAAGTTTGTGA 58.496 32.000 0.00 0.00 0.00 3.58
268 269 6.978659 TGTGTGTGTGTTTTTAAGTTTGTGAA 59.021 30.769 0.00 0.00 0.00 3.18
269 270 7.043325 TGTGTGTGTGTTTTTAAGTTTGTGAAC 60.043 33.333 0.00 0.00 35.97 3.18
270 271 6.978659 TGTGTGTGTTTTTAAGTTTGTGAACA 59.021 30.769 0.00 0.00 38.26 3.18
271 272 7.653713 TGTGTGTGTTTTTAAGTTTGTGAACAT 59.346 29.630 0.00 0.00 38.26 2.71
272 273 7.949428 GTGTGTGTTTTTAAGTTTGTGAACATG 59.051 33.333 0.00 0.00 38.26 3.21
273 274 7.653713 TGTGTGTTTTTAAGTTTGTGAACATGT 59.346 29.630 0.00 0.00 38.26 3.21
274 275 9.130312 GTGTGTTTTTAAGTTTGTGAACATGTA 57.870 29.630 0.00 0.00 38.26 2.29
275 276 9.862371 TGTGTTTTTAAGTTTGTGAACATGTAT 57.138 25.926 0.00 0.00 38.26 2.29
297 298 9.037737 TGTATTATTCTACTTTGTATCCGTTGC 57.962 33.333 0.00 0.00 0.00 4.17
298 299 9.037737 GTATTATTCTACTTTGTATCCGTTGCA 57.962 33.333 0.00 0.00 0.00 4.08
299 300 7.908827 TTATTCTACTTTGTATCCGTTGCAA 57.091 32.000 0.00 0.00 0.00 4.08
300 301 6.811253 ATTCTACTTTGTATCCGTTGCAAA 57.189 33.333 0.00 0.00 37.55 3.68
301 302 5.600908 TCTACTTTGTATCCGTTGCAAAC 57.399 39.130 0.00 0.00 45.31 2.93
312 313 2.205691 TTGCAAACACATGGGCACA 58.794 47.368 0.00 0.00 35.74 4.57
313 314 0.757512 TTGCAAACACATGGGCACAT 59.242 45.000 0.00 0.00 35.74 3.21
314 315 0.757512 TGCAAACACATGGGCACATT 59.242 45.000 0.00 0.00 34.35 2.71
315 316 1.149987 GCAAACACATGGGCACATTG 58.850 50.000 0.00 4.03 34.35 2.82
316 317 1.149987 CAAACACATGGGCACATTGC 58.850 50.000 0.00 0.00 44.08 3.56
317 318 1.050204 AAACACATGGGCACATTGCT 58.950 45.000 0.00 0.00 44.28 3.91
318 319 1.921982 AACACATGGGCACATTGCTA 58.078 45.000 0.00 0.00 44.28 3.49
319 320 1.466856 ACACATGGGCACATTGCTAG 58.533 50.000 0.00 0.00 44.28 3.42
320 321 1.272092 ACACATGGGCACATTGCTAGT 60.272 47.619 0.00 0.00 44.28 2.57
321 322 2.026356 ACACATGGGCACATTGCTAGTA 60.026 45.455 0.00 0.00 44.28 1.82
322 323 3.016031 CACATGGGCACATTGCTAGTAA 58.984 45.455 0.00 0.00 44.28 2.24
323 324 3.633525 CACATGGGCACATTGCTAGTAAT 59.366 43.478 0.00 0.00 44.28 1.89
324 325 4.821260 CACATGGGCACATTGCTAGTAATA 59.179 41.667 0.00 0.00 44.28 0.98
325 326 5.049198 CACATGGGCACATTGCTAGTAATAG 60.049 44.000 0.00 3.65 44.28 1.73
326 327 4.771114 TGGGCACATTGCTAGTAATAGT 57.229 40.909 5.69 4.61 44.28 2.12
327 328 5.110814 TGGGCACATTGCTAGTAATAGTT 57.889 39.130 5.69 0.00 44.28 2.24
328 329 4.881273 TGGGCACATTGCTAGTAATAGTTG 59.119 41.667 5.69 5.42 44.28 3.16
329 330 5.123227 GGGCACATTGCTAGTAATAGTTGA 58.877 41.667 5.69 0.00 44.28 3.18
330 331 5.588648 GGGCACATTGCTAGTAATAGTTGAA 59.411 40.000 5.69 0.00 44.28 2.69
331 332 6.263168 GGGCACATTGCTAGTAATAGTTGAAT 59.737 38.462 5.69 0.00 44.28 2.57
332 333 7.444183 GGGCACATTGCTAGTAATAGTTGAATA 59.556 37.037 5.69 0.00 44.28 1.75
333 334 8.283291 GGCACATTGCTAGTAATAGTTGAATAC 58.717 37.037 5.69 0.00 44.28 1.89
334 335 8.004344 GCACATTGCTAGTAATAGTTGAATACG 58.996 37.037 5.69 0.00 40.96 3.06
335 336 9.244799 CACATTGCTAGTAATAGTTGAATACGA 57.755 33.333 5.69 0.00 0.00 3.43
336 337 9.982651 ACATTGCTAGTAATAGTTGAATACGAT 57.017 29.630 5.69 0.00 0.00 3.73
338 339 8.812147 TTGCTAGTAATAGTTGAATACGATGG 57.188 34.615 0.00 0.00 0.00 3.51
339 340 6.866770 TGCTAGTAATAGTTGAATACGATGGC 59.133 38.462 0.00 0.00 0.00 4.40
340 341 6.033619 GCTAGTAATAGTTGAATACGATGGCG 59.966 42.308 0.00 0.00 44.79 5.69
352 353 2.295253 CGATGGCGTCTTCCTTTAGT 57.705 50.000 5.00 0.00 0.00 2.24
353 354 2.194271 CGATGGCGTCTTCCTTTAGTC 58.806 52.381 5.00 0.00 0.00 2.59
354 355 2.552031 GATGGCGTCTTCCTTTAGTCC 58.448 52.381 0.00 0.00 0.00 3.85
355 356 1.344065 TGGCGTCTTCCTTTAGTCCA 58.656 50.000 0.00 0.00 0.00 4.02
356 357 1.695242 TGGCGTCTTCCTTTAGTCCAA 59.305 47.619 0.00 0.00 0.00 3.53
357 358 2.105134 TGGCGTCTTCCTTTAGTCCAAA 59.895 45.455 0.00 0.00 0.00 3.28
358 359 2.483106 GGCGTCTTCCTTTAGTCCAAAC 59.517 50.000 0.00 0.00 0.00 2.93
359 360 2.157085 GCGTCTTCCTTTAGTCCAAACG 59.843 50.000 0.00 0.00 0.00 3.60
411 420 2.019951 CATATACGCACGCCCGGTC 61.020 63.158 0.00 0.00 0.00 4.79
418 427 3.449227 CACGCCCGGTCTAGAGCA 61.449 66.667 21.17 0.00 0.00 4.26
425 434 1.933853 CCCGGTCTAGAGCAAATTTCG 59.066 52.381 21.17 3.54 0.00 3.46
427 436 2.603560 CCGGTCTAGAGCAAATTTCGAC 59.396 50.000 21.17 0.00 0.00 4.20
431 440 4.093556 GGTCTAGAGCAAATTTCGACCAAG 59.906 45.833 16.98 0.00 39.30 3.61
438 447 3.081804 CAAATTTCGACCAAGCTACCCT 58.918 45.455 0.00 0.00 0.00 4.34
439 448 4.258543 CAAATTTCGACCAAGCTACCCTA 58.741 43.478 0.00 0.00 0.00 3.53
440 449 3.821421 ATTTCGACCAAGCTACCCTAG 57.179 47.619 0.00 0.00 0.00 3.02
469 478 4.433304 GCATGCATGTCGTTACGAAATTAC 59.567 41.667 26.79 4.93 37.72 1.89
512 521 1.359459 GGAACGAGATTGACGGTGGC 61.359 60.000 0.00 0.00 34.93 5.01
539 548 2.408704 CCGACATGACGTTTCAACTCTC 59.591 50.000 15.98 0.00 34.61 3.20
588 597 5.336150 ACTTGACGAGAACTCATGATCAT 57.664 39.130 1.18 1.18 0.00 2.45
624 635 1.219522 ACGCGTCCAAGGAAAGTTCG 61.220 55.000 5.58 0.00 0.00 3.95
644 655 2.342354 CGAATTTCAAAGATGCGCAACC 59.658 45.455 17.11 9.96 0.00 3.77
682 693 5.705902 CCGATACACAACACGATGGATATA 58.294 41.667 0.00 0.00 0.00 0.86
683 694 6.330278 CCGATACACAACACGATGGATATAT 58.670 40.000 0.00 0.00 0.00 0.86
684 695 7.477494 CCGATACACAACACGATGGATATATA 58.523 38.462 0.00 0.00 0.00 0.86
686 697 9.516314 CGATACACAACACGATGGATATATATT 57.484 33.333 0.00 0.00 0.00 1.28
690 701 9.419297 ACACAACACGATGGATATATATTGTAC 57.581 33.333 0.00 0.00 0.00 2.90
691 702 9.639601 CACAACACGATGGATATATATTGTACT 57.360 33.333 0.00 0.00 0.00 2.73
799 811 0.251165 ATTCAGGTTCCACCCAACGG 60.251 55.000 0.00 0.00 39.75 4.44
814 826 3.270027 CCAACGGCAGACAATCAAGATA 58.730 45.455 0.00 0.00 0.00 1.98
835 847 3.238108 AGAAGCACGATGGAACTACTG 57.762 47.619 0.00 0.00 0.00 2.74
853 869 1.790043 CTGCGTTGACAACACACGATA 59.210 47.619 18.09 0.00 34.84 2.92
854 870 1.790043 TGCGTTGACAACACACGATAG 59.210 47.619 18.09 0.69 46.19 2.08
887 903 0.666577 GACAGAGCAACCGCGTAAGT 60.667 55.000 4.92 0.00 45.49 2.24
936 952 1.647545 TAAGTACTGGTCGACCGGCG 61.648 60.000 37.81 25.63 46.43 6.46
940 956 4.351938 CTGGTCGACCGGCGTTCA 62.352 66.667 29.74 9.44 41.80 3.18
941 957 3.851845 CTGGTCGACCGGCGTTCAA 62.852 63.158 29.74 8.66 41.80 2.69
943 959 2.030958 GGTCGACCGGCGTTCAATT 61.031 57.895 20.85 0.00 41.80 2.32
945 961 1.301087 TCGACCGGCGTTCAATTGT 60.301 52.632 16.00 0.00 41.80 2.71
947 963 0.791422 CGACCGGCGTTCAATTGTTA 59.209 50.000 6.01 0.00 34.64 2.41
948 964 1.462869 CGACCGGCGTTCAATTGTTAC 60.463 52.381 6.01 4.54 34.64 2.50
949 965 1.532007 GACCGGCGTTCAATTGTTACA 59.468 47.619 6.01 0.00 0.00 2.41
952 968 2.722116 CCGGCGTTCAATTGTTACAAAC 59.278 45.455 6.01 1.24 0.00 2.93
953 969 3.364062 CGGCGTTCAATTGTTACAAACA 58.636 40.909 0.66 0.00 40.21 2.83
968 984 8.351495 TGTTACAAACAATTTTGATCAAGAGC 57.649 30.769 8.41 0.00 44.38 4.09
973 989 7.765360 ACAAACAATTTTGATCAAGAGCAGAAA 59.235 29.630 8.41 0.00 44.38 2.52
1086 1108 2.506438 GGCGTCGTGTGTCTAGCC 60.506 66.667 0.00 0.00 37.61 3.93
1260 1282 3.431725 GGTGTTAGCACAGGCGGC 61.432 66.667 12.05 0.00 46.95 6.53
1327 1364 3.350833 GGTTGCTGAGGAAAGACATCAT 58.649 45.455 0.00 0.00 38.62 2.45
1328 1365 4.517285 GGTTGCTGAGGAAAGACATCATA 58.483 43.478 0.00 0.00 38.62 2.15
1329 1366 5.128919 GGTTGCTGAGGAAAGACATCATAT 58.871 41.667 0.00 0.00 38.62 1.78
1334 1371 5.931146 GCTGAGGAAAGACATCATATACAGG 59.069 44.000 0.00 0.00 38.62 4.00
1354 1391 3.138468 AGGGGATTATTACTGCAAGACCC 59.862 47.826 0.00 0.00 37.43 4.46
1368 1409 4.402155 TGCAAGACCCATGATATTGTTTCC 59.598 41.667 0.00 0.00 0.00 3.13
1431 1473 9.558648 CTTTCATTTCGATGATGTTGTAAATGA 57.441 29.630 0.00 0.00 39.98 2.57
1432 1474 8.894409 TTCATTTCGATGATGTTGTAAATGAC 57.106 30.769 7.57 0.00 40.87 3.06
1452 1494 5.968254 TGACCGCTCACTTGTTTACATATA 58.032 37.500 0.00 0.00 0.00 0.86
1455 1499 6.346096 ACCGCTCACTTGTTTACATATACAT 58.654 36.000 0.00 0.00 0.00 2.29
1516 1560 1.678627 CATTGGTGTCGTTGGGTTTCA 59.321 47.619 0.00 0.00 0.00 2.69
1517 1561 1.835494 TTGGTGTCGTTGGGTTTCAA 58.165 45.000 0.00 0.00 0.00 2.69
1784 1887 1.638529 ATCGGGTGAGGGAGATGATC 58.361 55.000 0.00 0.00 0.00 2.92
1801 1904 8.879759 GGAGATGATCGAGTGTGTTTTATTTTA 58.120 33.333 0.00 0.00 0.00 1.52
1832 1936 1.960689 CGGTGATTTGGTGGACCTTTT 59.039 47.619 0.00 0.00 36.82 2.27
1845 1949 2.296190 GGACCTTTTGTGGTGTGATTCC 59.704 50.000 0.00 0.00 41.00 3.01
1900 2008 4.004982 GGGAAATTTCTACGTTAGTGGCA 58.995 43.478 17.42 0.00 0.00 4.92
1905 2018 4.459390 TTTCTACGTTAGTGGCAGCATA 57.541 40.909 0.00 0.00 0.00 3.14
1927 2051 3.862877 ACTATATTGGTGCTGCATGGA 57.137 42.857 5.27 0.00 0.00 3.41
1936 2060 2.413142 GCTGCATGGAGGCACTTCC 61.413 63.158 16.65 0.00 41.55 3.46
1976 2117 1.965930 TGCGCGGGATTGATATGCC 60.966 57.895 8.83 0.00 38.80 4.40
2102 2281 7.554476 AGTGAATTTAAGAACTGAATAGGAGGC 59.446 37.037 0.00 0.00 0.00 4.70
2103 2282 7.336931 GTGAATTTAAGAACTGAATAGGAGGCA 59.663 37.037 0.00 0.00 0.00 4.75
2124 2303 5.509501 GGCATCTTTGAGAAATTGTTGACCA 60.510 40.000 0.00 0.00 0.00 4.02
2125 2304 6.161381 GCATCTTTGAGAAATTGTTGACCAT 58.839 36.000 0.00 0.00 0.00 3.55
2269 2451 3.692593 CCCAGTCAAAAATAGGTAACCCG 59.307 47.826 0.00 0.00 35.12 5.28
2283 2466 5.321927 AGGTAACCCGATTTCAATTGAAGT 58.678 37.500 19.64 17.50 33.61 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.078848 GCGTGAGGTCTGCTCCATT 60.079 57.895 0.00 0.00 0.00 3.16
7 8 1.520342 GATGCGTGAGGTCTGCTCC 60.520 63.158 0.00 0.00 0.00 4.70
8 9 0.390340 TTGATGCGTGAGGTCTGCTC 60.390 55.000 0.00 0.00 0.00 4.26
9 10 0.035317 TTTGATGCGTGAGGTCTGCT 59.965 50.000 0.00 0.00 0.00 4.24
10 11 1.089920 ATTTGATGCGTGAGGTCTGC 58.910 50.000 0.00 0.00 0.00 4.26
11 12 2.485426 ACAATTTGATGCGTGAGGTCTG 59.515 45.455 2.79 0.00 0.00 3.51
12 13 2.744202 GACAATTTGATGCGTGAGGTCT 59.256 45.455 2.79 0.00 0.00 3.85
13 14 2.744202 AGACAATTTGATGCGTGAGGTC 59.256 45.455 2.79 0.00 0.00 3.85
14 15 2.783135 AGACAATTTGATGCGTGAGGT 58.217 42.857 2.79 0.00 0.00 3.85
15 16 3.063997 GGTAGACAATTTGATGCGTGAGG 59.936 47.826 2.79 0.00 0.00 3.86
16 17 3.684305 TGGTAGACAATTTGATGCGTGAG 59.316 43.478 2.79 0.00 0.00 3.51
17 18 3.435327 GTGGTAGACAATTTGATGCGTGA 59.565 43.478 2.79 0.00 0.00 4.35
18 19 3.188254 TGTGGTAGACAATTTGATGCGTG 59.812 43.478 2.79 0.00 0.00 5.34
19 20 3.188460 GTGTGGTAGACAATTTGATGCGT 59.812 43.478 2.79 0.00 35.91 5.24
20 21 3.188254 TGTGTGGTAGACAATTTGATGCG 59.812 43.478 2.79 0.00 35.91 4.73
21 22 4.023279 TGTGTGTGGTAGACAATTTGATGC 60.023 41.667 2.79 0.00 35.91 3.91
22 23 5.687770 TGTGTGTGGTAGACAATTTGATG 57.312 39.130 2.79 0.00 35.91 3.07
23 24 6.707440 TTTGTGTGTGGTAGACAATTTGAT 57.293 33.333 2.79 0.00 41.54 2.57
24 25 6.516739 TTTTGTGTGTGGTAGACAATTTGA 57.483 33.333 2.79 0.00 41.54 2.69
87 88 2.158682 TCTGCACCCTAGCTGACAAAAA 60.159 45.455 0.00 0.00 37.52 1.94
88 89 1.419762 TCTGCACCCTAGCTGACAAAA 59.580 47.619 0.00 0.00 37.52 2.44
89 90 1.055849 TCTGCACCCTAGCTGACAAA 58.944 50.000 0.00 0.00 37.52 2.83
90 91 1.065926 CATCTGCACCCTAGCTGACAA 60.066 52.381 0.00 0.00 43.67 3.18
91 92 0.538584 CATCTGCACCCTAGCTGACA 59.461 55.000 0.00 0.00 43.67 3.58
92 93 0.826715 TCATCTGCACCCTAGCTGAC 59.173 55.000 0.00 0.00 43.67 3.51
93 94 1.117994 CTCATCTGCACCCTAGCTGA 58.882 55.000 0.00 0.00 44.70 4.26
94 95 0.532417 GCTCATCTGCACCCTAGCTG 60.532 60.000 0.00 0.00 34.99 4.24
95 96 0.690411 AGCTCATCTGCACCCTAGCT 60.690 55.000 0.00 0.00 35.55 3.32
96 97 0.249826 GAGCTCATCTGCACCCTAGC 60.250 60.000 9.40 0.00 34.99 3.42
97 98 0.031857 CGAGCTCATCTGCACCCTAG 59.968 60.000 15.40 0.00 34.99 3.02
98 99 0.395724 TCGAGCTCATCTGCACCCTA 60.396 55.000 15.40 0.00 34.99 3.53
99 100 1.674764 CTCGAGCTCATCTGCACCCT 61.675 60.000 15.40 0.00 34.99 4.34
100 101 1.227205 CTCGAGCTCATCTGCACCC 60.227 63.158 15.40 0.00 34.99 4.61
101 102 0.805322 CACTCGAGCTCATCTGCACC 60.805 60.000 13.61 0.00 34.99 5.01
102 103 1.419874 GCACTCGAGCTCATCTGCAC 61.420 60.000 13.61 0.00 34.99 4.57
103 104 1.153686 GCACTCGAGCTCATCTGCA 60.154 57.895 13.61 0.00 34.99 4.41
104 105 1.146957 CTGCACTCGAGCTCATCTGC 61.147 60.000 13.61 14.19 34.99 4.26
105 106 0.455005 TCTGCACTCGAGCTCATCTG 59.545 55.000 13.61 2.95 34.99 2.90
106 107 0.740149 CTCTGCACTCGAGCTCATCT 59.260 55.000 13.61 0.00 34.99 2.90
107 108 0.737804 TCTCTGCACTCGAGCTCATC 59.262 55.000 13.61 0.00 34.99 2.92
108 109 1.067364 CATCTCTGCACTCGAGCTCAT 59.933 52.381 13.61 0.00 34.99 2.90
109 110 0.455005 CATCTCTGCACTCGAGCTCA 59.545 55.000 13.61 9.66 34.99 4.26
110 111 0.248990 CCATCTCTGCACTCGAGCTC 60.249 60.000 13.61 2.73 34.99 4.09
111 112 0.682532 TCCATCTCTGCACTCGAGCT 60.683 55.000 13.61 0.00 34.99 4.09
112 113 0.388659 ATCCATCTCTGCACTCGAGC 59.611 55.000 13.61 0.00 0.00 5.03
113 114 2.886862 AATCCATCTCTGCACTCGAG 57.113 50.000 11.84 11.84 0.00 4.04
114 115 3.525537 GAAAATCCATCTCTGCACTCGA 58.474 45.455 0.00 0.00 0.00 4.04
115 116 2.283617 CGAAAATCCATCTCTGCACTCG 59.716 50.000 0.00 0.00 0.00 4.18
116 117 3.308323 GTCGAAAATCCATCTCTGCACTC 59.692 47.826 0.00 0.00 0.00 3.51
117 118 3.055530 AGTCGAAAATCCATCTCTGCACT 60.056 43.478 0.00 0.00 0.00 4.40
118 119 3.265791 AGTCGAAAATCCATCTCTGCAC 58.734 45.455 0.00 0.00 0.00 4.57
119 120 3.616956 AGTCGAAAATCCATCTCTGCA 57.383 42.857 0.00 0.00 0.00 4.41
120 121 4.187694 AGAAGTCGAAAATCCATCTCTGC 58.812 43.478 0.00 0.00 0.00 4.26
121 122 6.983307 ACATAGAAGTCGAAAATCCATCTCTG 59.017 38.462 0.00 0.00 0.00 3.35
122 123 7.118496 ACATAGAAGTCGAAAATCCATCTCT 57.882 36.000 0.00 0.00 0.00 3.10
123 124 7.778470 AACATAGAAGTCGAAAATCCATCTC 57.222 36.000 0.00 0.00 0.00 2.75
124 125 7.824289 TGAAACATAGAAGTCGAAAATCCATCT 59.176 33.333 0.00 0.00 0.00 2.90
125 126 7.974675 TGAAACATAGAAGTCGAAAATCCATC 58.025 34.615 0.00 0.00 0.00 3.51
126 127 7.607991 ACTGAAACATAGAAGTCGAAAATCCAT 59.392 33.333 0.00 0.00 0.00 3.41
127 128 6.934645 ACTGAAACATAGAAGTCGAAAATCCA 59.065 34.615 0.00 0.00 0.00 3.41
128 129 7.365840 ACTGAAACATAGAAGTCGAAAATCC 57.634 36.000 0.00 0.00 0.00 3.01
129 130 9.107367 CAAACTGAAACATAGAAGTCGAAAATC 57.893 33.333 0.00 0.00 0.00 2.17
130 131 8.621286 ACAAACTGAAACATAGAAGTCGAAAAT 58.379 29.630 0.00 0.00 0.00 1.82
131 132 7.981142 ACAAACTGAAACATAGAAGTCGAAAA 58.019 30.769 0.00 0.00 0.00 2.29
132 133 7.548196 ACAAACTGAAACATAGAAGTCGAAA 57.452 32.000 0.00 0.00 0.00 3.46
133 134 8.139350 TCTACAAACTGAAACATAGAAGTCGAA 58.861 33.333 0.00 0.00 0.00 3.71
134 135 7.654568 TCTACAAACTGAAACATAGAAGTCGA 58.345 34.615 0.00 0.00 0.00 4.20
135 136 7.869016 TCTACAAACTGAAACATAGAAGTCG 57.131 36.000 0.00 0.00 0.00 4.18
137 138 8.560374 GCTTTCTACAAACTGAAACATAGAAGT 58.440 33.333 0.00 0.00 32.03 3.01
138 139 8.017946 GGCTTTCTACAAACTGAAACATAGAAG 58.982 37.037 0.00 0.00 32.03 2.85
139 140 7.040686 GGGCTTTCTACAAACTGAAACATAGAA 60.041 37.037 0.00 0.00 0.00 2.10
140 141 6.430000 GGGCTTTCTACAAACTGAAACATAGA 59.570 38.462 0.00 0.00 0.00 1.98
141 142 6.431234 AGGGCTTTCTACAAACTGAAACATAG 59.569 38.462 0.00 0.00 0.00 2.23
142 143 6.303839 AGGGCTTTCTACAAACTGAAACATA 58.696 36.000 0.00 0.00 0.00 2.29
143 144 5.140454 AGGGCTTTCTACAAACTGAAACAT 58.860 37.500 0.00 0.00 0.00 2.71
144 145 4.532834 AGGGCTTTCTACAAACTGAAACA 58.467 39.130 0.00 0.00 0.00 2.83
145 146 4.822350 AGAGGGCTTTCTACAAACTGAAAC 59.178 41.667 0.00 0.00 0.00 2.78
146 147 5.048846 AGAGGGCTTTCTACAAACTGAAA 57.951 39.130 0.00 0.00 0.00 2.69
147 148 4.706842 AGAGGGCTTTCTACAAACTGAA 57.293 40.909 0.00 0.00 0.00 3.02
148 149 4.838986 ACTAGAGGGCTTTCTACAAACTGA 59.161 41.667 0.00 0.00 0.00 3.41
149 150 5.153950 ACTAGAGGGCTTTCTACAAACTG 57.846 43.478 0.00 0.00 0.00 3.16
150 151 6.898521 AGATACTAGAGGGCTTTCTACAAACT 59.101 38.462 0.00 0.00 0.00 2.66
151 152 7.114866 AGATACTAGAGGGCTTTCTACAAAC 57.885 40.000 0.00 0.00 0.00 2.93
152 153 7.399191 TCAAGATACTAGAGGGCTTTCTACAAA 59.601 37.037 0.00 0.00 0.00 2.83
153 154 6.895756 TCAAGATACTAGAGGGCTTTCTACAA 59.104 38.462 0.00 0.00 0.00 2.41
154 155 6.432581 TCAAGATACTAGAGGGCTTTCTACA 58.567 40.000 0.00 0.00 0.00 2.74
155 156 6.963083 TCAAGATACTAGAGGGCTTTCTAC 57.037 41.667 0.00 0.00 0.00 2.59
156 157 7.620094 AGTTTCAAGATACTAGAGGGCTTTCTA 59.380 37.037 0.00 0.00 0.00 2.10
157 158 6.442244 AGTTTCAAGATACTAGAGGGCTTTCT 59.558 38.462 0.00 0.00 0.00 2.52
158 159 6.645306 AGTTTCAAGATACTAGAGGGCTTTC 58.355 40.000 0.00 0.00 0.00 2.62
159 160 6.628644 AGTTTCAAGATACTAGAGGGCTTT 57.371 37.500 0.00 0.00 0.00 3.51
160 161 7.364851 GGTTAGTTTCAAGATACTAGAGGGCTT 60.365 40.741 0.00 0.00 0.00 4.35
161 162 6.098552 GGTTAGTTTCAAGATACTAGAGGGCT 59.901 42.308 0.00 0.00 0.00 5.19
162 163 6.127140 TGGTTAGTTTCAAGATACTAGAGGGC 60.127 42.308 0.00 0.00 0.00 5.19
163 164 7.093465 TGTGGTTAGTTTCAAGATACTAGAGGG 60.093 40.741 0.00 0.00 0.00 4.30
164 165 7.837863 TGTGGTTAGTTTCAAGATACTAGAGG 58.162 38.462 0.00 0.00 0.00 3.69
165 166 9.522804 GATGTGGTTAGTTTCAAGATACTAGAG 57.477 37.037 0.00 0.00 0.00 2.43
166 167 8.475639 GGATGTGGTTAGTTTCAAGATACTAGA 58.524 37.037 0.00 0.00 0.00 2.43
167 168 7.711339 GGGATGTGGTTAGTTTCAAGATACTAG 59.289 40.741 0.00 0.00 0.00 2.57
168 169 7.402071 AGGGATGTGGTTAGTTTCAAGATACTA 59.598 37.037 0.00 0.00 0.00 1.82
169 170 6.215636 AGGGATGTGGTTAGTTTCAAGATACT 59.784 38.462 0.00 0.00 0.00 2.12
170 171 6.415573 AGGGATGTGGTTAGTTTCAAGATAC 58.584 40.000 0.00 0.00 0.00 2.24
171 172 6.352737 GGAGGGATGTGGTTAGTTTCAAGATA 60.353 42.308 0.00 0.00 0.00 1.98
172 173 5.501156 GAGGGATGTGGTTAGTTTCAAGAT 58.499 41.667 0.00 0.00 0.00 2.40
173 174 4.263331 GGAGGGATGTGGTTAGTTTCAAGA 60.263 45.833 0.00 0.00 0.00 3.02
174 175 4.010349 GGAGGGATGTGGTTAGTTTCAAG 58.990 47.826 0.00 0.00 0.00 3.02
175 176 3.245122 GGGAGGGATGTGGTTAGTTTCAA 60.245 47.826 0.00 0.00 0.00 2.69
176 177 2.307686 GGGAGGGATGTGGTTAGTTTCA 59.692 50.000 0.00 0.00 0.00 2.69
177 178 2.576648 AGGGAGGGATGTGGTTAGTTTC 59.423 50.000 0.00 0.00 0.00 2.78
178 179 2.576648 GAGGGAGGGATGTGGTTAGTTT 59.423 50.000 0.00 0.00 0.00 2.66
179 180 2.197465 GAGGGAGGGATGTGGTTAGTT 58.803 52.381 0.00 0.00 0.00 2.24
180 181 1.080498 TGAGGGAGGGATGTGGTTAGT 59.920 52.381 0.00 0.00 0.00 2.24
181 182 1.486726 GTGAGGGAGGGATGTGGTTAG 59.513 57.143 0.00 0.00 0.00 2.34
182 183 1.580059 GTGAGGGAGGGATGTGGTTA 58.420 55.000 0.00 0.00 0.00 2.85
183 184 1.208165 GGTGAGGGAGGGATGTGGTT 61.208 60.000 0.00 0.00 0.00 3.67
184 185 1.616628 GGTGAGGGAGGGATGTGGT 60.617 63.158 0.00 0.00 0.00 4.16
185 186 1.307343 AGGTGAGGGAGGGATGTGG 60.307 63.158 0.00 0.00 0.00 4.17
186 187 0.618680 TGAGGTGAGGGAGGGATGTG 60.619 60.000 0.00 0.00 0.00 3.21
187 188 0.344790 ATGAGGTGAGGGAGGGATGT 59.655 55.000 0.00 0.00 0.00 3.06
188 189 1.055040 GATGAGGTGAGGGAGGGATG 58.945 60.000 0.00 0.00 0.00 3.51
189 190 0.644380 TGATGAGGTGAGGGAGGGAT 59.356 55.000 0.00 0.00 0.00 3.85
190 191 0.417437 TTGATGAGGTGAGGGAGGGA 59.583 55.000 0.00 0.00 0.00 4.20
191 192 1.289160 TTTGATGAGGTGAGGGAGGG 58.711 55.000 0.00 0.00 0.00 4.30
192 193 2.040278 TGTTTTGATGAGGTGAGGGAGG 59.960 50.000 0.00 0.00 0.00 4.30
193 194 3.244700 ACTGTTTTGATGAGGTGAGGGAG 60.245 47.826 0.00 0.00 0.00 4.30
194 195 2.711009 ACTGTTTTGATGAGGTGAGGGA 59.289 45.455 0.00 0.00 0.00 4.20
195 196 3.146104 ACTGTTTTGATGAGGTGAGGG 57.854 47.619 0.00 0.00 0.00 4.30
196 197 4.136796 TGAACTGTTTTGATGAGGTGAGG 58.863 43.478 0.00 0.00 0.00 3.86
197 198 5.278169 CCTTGAACTGTTTTGATGAGGTGAG 60.278 44.000 0.00 0.00 0.00 3.51
198 199 4.580167 CCTTGAACTGTTTTGATGAGGTGA 59.420 41.667 0.00 0.00 0.00 4.02
199 200 4.580167 TCCTTGAACTGTTTTGATGAGGTG 59.420 41.667 0.00 0.00 0.00 4.00
200 201 4.792068 TCCTTGAACTGTTTTGATGAGGT 58.208 39.130 0.00 0.00 0.00 3.85
201 202 5.772825 TTCCTTGAACTGTTTTGATGAGG 57.227 39.130 0.00 0.00 0.00 3.86
202 203 7.874940 TGTATTCCTTGAACTGTTTTGATGAG 58.125 34.615 0.00 0.00 0.00 2.90
203 204 7.815840 TGTATTCCTTGAACTGTTTTGATGA 57.184 32.000 0.00 0.00 0.00 2.92
204 205 9.480053 AAATGTATTCCTTGAACTGTTTTGATG 57.520 29.630 0.00 0.00 0.00 3.07
206 207 9.311916 CAAAATGTATTCCTTGAACTGTTTTGA 57.688 29.630 0.00 0.00 34.76 2.69
207 208 9.311916 TCAAAATGTATTCCTTGAACTGTTTTG 57.688 29.630 0.00 0.00 34.49 2.44
208 209 9.533253 CTCAAAATGTATTCCTTGAACTGTTTT 57.467 29.630 0.00 0.00 0.00 2.43
209 210 8.695456 ACTCAAAATGTATTCCTTGAACTGTTT 58.305 29.630 0.00 0.00 0.00 2.83
210 211 8.237811 ACTCAAAATGTATTCCTTGAACTGTT 57.762 30.769 0.00 0.00 0.00 3.16
211 212 7.823745 ACTCAAAATGTATTCCTTGAACTGT 57.176 32.000 0.00 0.00 0.00 3.55
224 225 9.347934 CACACACAAAGTTTTACTCAAAATGTA 57.652 29.630 0.00 0.00 36.10 2.29
225 226 7.870445 ACACACACAAAGTTTTACTCAAAATGT 59.130 29.630 0.00 0.00 36.10 2.71
226 227 8.161610 CACACACACAAAGTTTTACTCAAAATG 58.838 33.333 0.00 0.00 36.10 2.32
227 228 7.870445 ACACACACACAAAGTTTTACTCAAAAT 59.130 29.630 0.00 0.00 36.10 1.82
228 229 7.203910 ACACACACACAAAGTTTTACTCAAAA 58.796 30.769 0.00 0.00 0.00 2.44
229 230 6.740110 ACACACACACAAAGTTTTACTCAAA 58.260 32.000 0.00 0.00 0.00 2.69
230 231 6.320494 ACACACACACAAAGTTTTACTCAA 57.680 33.333 0.00 0.00 0.00 3.02
231 232 5.950758 ACACACACACAAAGTTTTACTCA 57.049 34.783 0.00 0.00 0.00 3.41
232 233 7.631915 AAAACACACACACAAAGTTTTACTC 57.368 32.000 0.00 0.00 39.71 2.59
233 234 9.530633 TTAAAAACACACACACAAAGTTTTACT 57.469 25.926 0.00 0.00 40.35 2.24
234 235 9.786224 CTTAAAAACACACACACAAAGTTTTAC 57.214 29.630 0.00 0.00 40.35 2.01
235 236 9.530633 ACTTAAAAACACACACACAAAGTTTTA 57.469 25.926 0.00 0.00 40.35 1.52
236 237 8.426881 ACTTAAAAACACACACACAAAGTTTT 57.573 26.923 0.00 0.00 42.29 2.43
237 238 8.426881 AACTTAAAAACACACACACAAAGTTT 57.573 26.923 0.00 0.00 32.36 2.66
238 239 8.331742 CAAACTTAAAAACACACACACAAAGTT 58.668 29.630 0.00 0.00 36.50 2.66
239 240 7.492994 ACAAACTTAAAAACACACACACAAAGT 59.507 29.630 0.00 0.00 0.00 2.66
240 241 7.791590 CACAAACTTAAAAACACACACACAAAG 59.208 33.333 0.00 0.00 0.00 2.77
241 242 7.491372 TCACAAACTTAAAAACACACACACAAA 59.509 29.630 0.00 0.00 0.00 2.83
242 243 6.978659 TCACAAACTTAAAAACACACACACAA 59.021 30.769 0.00 0.00 0.00 3.33
243 244 6.504398 TCACAAACTTAAAAACACACACACA 58.496 32.000 0.00 0.00 0.00 3.72
244 245 6.994868 TCACAAACTTAAAAACACACACAC 57.005 33.333 0.00 0.00 0.00 3.82
245 246 6.978659 TGTTCACAAACTTAAAAACACACACA 59.021 30.769 0.00 0.00 36.30 3.72
246 247 7.396190 TGTTCACAAACTTAAAAACACACAC 57.604 32.000 0.00 0.00 36.30 3.82
247 248 7.653713 ACATGTTCACAAACTTAAAAACACACA 59.346 29.630 0.00 0.00 36.30 3.72
248 249 8.013236 ACATGTTCACAAACTTAAAAACACAC 57.987 30.769 0.00 0.00 36.30 3.82
249 250 9.862371 ATACATGTTCACAAACTTAAAAACACA 57.138 25.926 2.30 0.00 36.30 3.72
271 272 9.037737 GCAACGGATACAAAGTAGAATAATACA 57.962 33.333 0.00 0.00 0.00 2.29
272 273 9.037737 TGCAACGGATACAAAGTAGAATAATAC 57.962 33.333 0.00 0.00 0.00 1.89
273 274 9.602568 TTGCAACGGATACAAAGTAGAATAATA 57.397 29.630 0.00 0.00 0.00 0.98
274 275 8.500753 TTGCAACGGATACAAAGTAGAATAAT 57.499 30.769 0.00 0.00 0.00 1.28
275 276 7.908827 TTGCAACGGATACAAAGTAGAATAA 57.091 32.000 0.00 0.00 0.00 1.40
276 277 7.388224 TGTTTGCAACGGATACAAAGTAGAATA 59.612 33.333 0.00 0.00 34.19 1.75
277 278 6.205853 TGTTTGCAACGGATACAAAGTAGAAT 59.794 34.615 0.00 0.00 34.19 2.40
278 279 5.527951 TGTTTGCAACGGATACAAAGTAGAA 59.472 36.000 0.00 0.00 34.19 2.10
279 280 5.049954 GTGTTTGCAACGGATACAAAGTAGA 60.050 40.000 0.00 0.00 34.19 2.59
280 281 5.144359 GTGTTTGCAACGGATACAAAGTAG 58.856 41.667 0.00 0.00 34.19 2.57
281 282 4.575236 TGTGTTTGCAACGGATACAAAGTA 59.425 37.500 0.00 0.00 34.19 2.24
282 283 3.378742 TGTGTTTGCAACGGATACAAAGT 59.621 39.130 0.00 0.00 34.19 2.66
283 284 3.958704 TGTGTTTGCAACGGATACAAAG 58.041 40.909 0.00 0.00 34.19 2.77
284 285 4.294232 CATGTGTTTGCAACGGATACAAA 58.706 39.130 0.00 0.00 0.00 2.83
285 286 3.304996 CCATGTGTTTGCAACGGATACAA 60.305 43.478 0.00 0.00 0.00 2.41
286 287 2.227626 CCATGTGTTTGCAACGGATACA 59.772 45.455 0.00 0.00 0.00 2.29
287 288 2.415357 CCCATGTGTTTGCAACGGATAC 60.415 50.000 0.00 0.00 0.00 2.24
288 289 1.815613 CCCATGTGTTTGCAACGGATA 59.184 47.619 0.00 0.00 0.00 2.59
289 290 0.602562 CCCATGTGTTTGCAACGGAT 59.397 50.000 0.00 0.00 0.00 4.18
290 291 2.037053 CCCATGTGTTTGCAACGGA 58.963 52.632 0.00 0.00 0.00 4.69
291 292 1.664333 GCCCATGTGTTTGCAACGG 60.664 57.895 0.00 0.00 0.00 4.44
292 293 1.067084 TGCCCATGTGTTTGCAACG 59.933 52.632 0.00 0.00 0.00 4.10
293 294 0.179089 TGTGCCCATGTGTTTGCAAC 60.179 50.000 0.00 0.00 35.16 4.17
294 295 0.757512 ATGTGCCCATGTGTTTGCAA 59.242 45.000 0.00 0.00 35.16 4.08
295 296 0.757512 AATGTGCCCATGTGTTTGCA 59.242 45.000 0.00 0.00 0.00 4.08
296 297 1.149987 CAATGTGCCCATGTGTTTGC 58.850 50.000 0.00 0.00 0.00 3.68
297 298 1.149987 GCAATGTGCCCATGTGTTTG 58.850 50.000 0.00 0.00 37.42 2.93
298 299 1.050204 AGCAATGTGCCCATGTGTTT 58.950 45.000 0.00 0.00 46.52 2.83
299 300 1.820519 CTAGCAATGTGCCCATGTGTT 59.179 47.619 0.00 0.00 46.52 3.32
300 301 1.272092 ACTAGCAATGTGCCCATGTGT 60.272 47.619 0.00 0.00 46.52 3.72
301 302 1.466856 ACTAGCAATGTGCCCATGTG 58.533 50.000 0.00 0.00 46.52 3.21
302 303 3.364460 TTACTAGCAATGTGCCCATGT 57.636 42.857 0.00 0.00 46.52 3.21
303 304 5.065914 ACTATTACTAGCAATGTGCCCATG 58.934 41.667 0.00 0.00 46.52 3.66
304 305 5.310409 ACTATTACTAGCAATGTGCCCAT 57.690 39.130 0.00 0.00 46.52 4.00
305 306 4.771114 ACTATTACTAGCAATGTGCCCA 57.229 40.909 0.00 0.00 46.52 5.36
306 307 5.123227 TCAACTATTACTAGCAATGTGCCC 58.877 41.667 0.00 0.00 46.52 5.36
307 308 6.677781 TTCAACTATTACTAGCAATGTGCC 57.322 37.500 0.00 0.00 46.52 5.01
308 309 8.004344 CGTATTCAACTATTACTAGCAATGTGC 58.996 37.037 0.00 0.00 45.46 4.57
309 310 9.244799 TCGTATTCAACTATTACTAGCAATGTG 57.755 33.333 0.00 0.00 0.00 3.21
310 311 9.982651 ATCGTATTCAACTATTACTAGCAATGT 57.017 29.630 0.00 0.00 0.00 2.71
312 313 9.424319 CCATCGTATTCAACTATTACTAGCAAT 57.576 33.333 0.00 0.00 0.00 3.56
313 314 7.384115 GCCATCGTATTCAACTATTACTAGCAA 59.616 37.037 0.00 0.00 0.00 3.91
314 315 6.866770 GCCATCGTATTCAACTATTACTAGCA 59.133 38.462 0.00 0.00 0.00 3.49
315 316 6.033619 CGCCATCGTATTCAACTATTACTAGC 59.966 42.308 0.00 0.00 0.00 3.42
316 317 7.493976 CGCCATCGTATTCAACTATTACTAG 57.506 40.000 0.00 0.00 0.00 2.57
333 334 2.194271 GACTAAAGGAAGACGCCATCG 58.806 52.381 0.00 0.00 42.43 3.84
334 335 2.093658 TGGACTAAAGGAAGACGCCATC 60.094 50.000 0.00 0.00 0.00 3.51
335 336 1.906574 TGGACTAAAGGAAGACGCCAT 59.093 47.619 0.00 0.00 0.00 4.40
336 337 1.344065 TGGACTAAAGGAAGACGCCA 58.656 50.000 0.00 0.00 0.00 5.69
337 338 2.467566 TTGGACTAAAGGAAGACGCC 57.532 50.000 0.00 0.00 0.00 5.68
338 339 2.157085 CGTTTGGACTAAAGGAAGACGC 59.843 50.000 0.00 0.00 36.50 5.19
339 340 3.645884 TCGTTTGGACTAAAGGAAGACG 58.354 45.455 4.43 0.00 39.46 4.18
343 344 3.811083 TGCTTCGTTTGGACTAAAGGAA 58.189 40.909 15.68 15.68 45.62 3.36
344 345 3.399330 CTGCTTCGTTTGGACTAAAGGA 58.601 45.455 2.92 2.92 40.34 3.36
345 346 2.095718 GCTGCTTCGTTTGGACTAAAGG 60.096 50.000 0.00 0.00 35.90 3.11
346 347 2.808543 AGCTGCTTCGTTTGGACTAAAG 59.191 45.455 0.00 0.00 0.00 1.85
347 348 2.548057 CAGCTGCTTCGTTTGGACTAAA 59.452 45.455 0.00 0.00 0.00 1.85
348 349 2.143122 CAGCTGCTTCGTTTGGACTAA 58.857 47.619 0.00 0.00 0.00 2.24
349 350 1.608025 CCAGCTGCTTCGTTTGGACTA 60.608 52.381 8.66 0.00 0.00 2.59
350 351 0.886490 CCAGCTGCTTCGTTTGGACT 60.886 55.000 8.66 0.00 0.00 3.85
351 352 0.884704 TCCAGCTGCTTCGTTTGGAC 60.885 55.000 8.66 0.00 33.21 4.02
352 353 0.036732 ATCCAGCTGCTTCGTTTGGA 59.963 50.000 8.66 3.68 41.75 3.53
353 354 1.398390 GTATCCAGCTGCTTCGTTTGG 59.602 52.381 8.66 0.00 0.00 3.28
354 355 2.076100 TGTATCCAGCTGCTTCGTTTG 58.924 47.619 8.66 0.00 0.00 2.93
355 356 2.289694 ACTGTATCCAGCTGCTTCGTTT 60.290 45.455 8.66 0.00 42.81 3.60
356 357 1.276421 ACTGTATCCAGCTGCTTCGTT 59.724 47.619 8.66 0.00 42.81 3.85
357 358 0.898320 ACTGTATCCAGCTGCTTCGT 59.102 50.000 8.66 0.00 42.81 3.85
358 359 1.565305 GACTGTATCCAGCTGCTTCG 58.435 55.000 8.66 0.00 42.81 3.79
359 360 1.565305 CGACTGTATCCAGCTGCTTC 58.435 55.000 8.66 0.00 42.81 3.86
382 383 1.083657 CGTATATGCACGCCGTTGC 60.084 57.895 0.00 5.00 43.31 4.17
407 416 2.603560 GGTCGAAATTTGCTCTAGACCG 59.396 50.000 0.00 0.00 37.52 4.79
411 420 3.686726 AGCTTGGTCGAAATTTGCTCTAG 59.313 43.478 0.00 0.00 0.00 2.43
418 427 3.434940 AGGGTAGCTTGGTCGAAATTT 57.565 42.857 0.00 0.00 0.00 1.82
440 449 7.685406 TTCGTAACGACATGCATGCTAATGC 62.685 44.000 26.53 12.80 46.85 3.56
441 450 3.245048 TCGTAACGACATGCATGCTAATG 59.755 43.478 26.53 17.09 36.82 1.90
442 451 3.453424 TCGTAACGACATGCATGCTAAT 58.547 40.909 26.53 12.99 0.00 1.73
443 452 2.882324 TCGTAACGACATGCATGCTAA 58.118 42.857 26.53 5.21 0.00 3.09
458 467 7.921745 CACTTTTTCCCTTTGGTAATTTCGTAA 59.078 33.333 0.00 0.00 0.00 3.18
469 478 5.163903 CGTTTGAAACACTTTTTCCCTTTGG 60.164 40.000 8.93 0.00 0.00 3.28
519 528 3.049912 TGAGAGTTGAAACGTCATGTCG 58.950 45.455 10.83 10.83 32.48 4.35
588 597 1.075542 CGTGCCAAGCTAATTGACGA 58.924 50.000 0.00 0.00 39.98 4.20
624 635 3.578688 AGGTTGCGCATCTTTGAAATTC 58.421 40.909 12.75 0.00 0.00 2.17
644 655 1.440708 ATCGGCCGAGTATAGACGAG 58.559 55.000 33.87 0.00 33.64 4.18
693 704 9.291664 GCTGACTTGTTCAATTACTACTAGTAG 57.708 37.037 25.30 25.30 34.95 2.57
738 750 3.203716 CGGGGAGTACTTAATTGAAGGC 58.796 50.000 0.00 0.00 39.74 4.35
743 755 3.442100 GACGACGGGGAGTACTTAATTG 58.558 50.000 0.00 0.00 0.00 2.32
799 811 5.567552 GTGCTTCTTATCTTGATTGTCTGC 58.432 41.667 0.00 0.00 0.00 4.26
814 826 3.589988 CAGTAGTTCCATCGTGCTTCTT 58.410 45.455 0.00 0.00 0.00 2.52
835 847 1.461888 GCTATCGTGTGTTGTCAACGC 60.462 52.381 20.10 20.10 42.12 4.84
853 869 2.031163 GTCCTGCACTCCAACGCT 59.969 61.111 0.00 0.00 0.00 5.07
854 870 2.280797 TGTCCTGCACTCCAACGC 60.281 61.111 0.00 0.00 0.00 4.84
887 903 0.391130 CCGGAGAAAATGTCAGCGGA 60.391 55.000 0.00 0.00 0.00 5.54
943 959 7.978414 TGCTCTTGATCAAAATTGTTTGTAACA 59.022 29.630 9.88 0.00 43.90 2.41
945 961 8.412456 TCTGCTCTTGATCAAAATTGTTTGTAA 58.588 29.630 9.88 0.00 43.90 2.41
947 963 6.808829 TCTGCTCTTGATCAAAATTGTTTGT 58.191 32.000 9.88 0.00 43.90 2.83
948 964 7.703298 TTCTGCTCTTGATCAAAATTGTTTG 57.297 32.000 9.88 0.00 44.71 2.93
949 965 7.983484 AGTTTCTGCTCTTGATCAAAATTGTTT 59.017 29.630 9.88 0.00 0.00 2.83
952 968 7.368833 AGAGTTTCTGCTCTTGATCAAAATTG 58.631 34.615 9.88 0.00 42.69 2.32
953 969 7.521871 AGAGTTTCTGCTCTTGATCAAAATT 57.478 32.000 9.88 0.00 42.69 1.82
955 971 5.178252 CGAGAGTTTCTGCTCTTGATCAAAA 59.822 40.000 9.88 0.00 45.47 2.44
956 972 4.687948 CGAGAGTTTCTGCTCTTGATCAAA 59.312 41.667 9.88 0.26 45.47 2.69
968 984 2.449189 CTGCTCGATCGAGAGTTTCTG 58.551 52.381 41.45 24.70 44.53 3.02
973 989 1.726865 CTGCTGCTCGATCGAGAGT 59.273 57.895 41.45 0.00 44.53 3.24
1225 1247 2.111384 ACCGCTGTCTCCAACATAGAT 58.889 47.619 0.00 0.00 37.23 1.98
1260 1282 3.465403 CCTCCTCCACAGCCTCCG 61.465 72.222 0.00 0.00 0.00 4.63
1263 1285 2.608988 CCACCTCCTCCACAGCCT 60.609 66.667 0.00 0.00 0.00 4.58
1302 1339 1.302832 CTTTCCTCAGCAACCGCCT 60.303 57.895 0.00 0.00 39.83 5.52
1305 1342 1.734465 GATGTCTTTCCTCAGCAACCG 59.266 52.381 0.00 0.00 0.00 4.44
1327 1364 7.256547 GGTCTTGCAGTAATAATCCCCTGTATA 60.257 40.741 0.00 0.00 0.00 1.47
1328 1365 6.465894 GGTCTTGCAGTAATAATCCCCTGTAT 60.466 42.308 0.00 0.00 0.00 2.29
1329 1366 5.163237 GGTCTTGCAGTAATAATCCCCTGTA 60.163 44.000 0.00 0.00 0.00 2.74
1334 1371 4.164843 TGGGTCTTGCAGTAATAATCCC 57.835 45.455 0.00 0.00 0.00 3.85
1416 1458 4.094887 GTGAGCGGTCATTTACAACATCAT 59.905 41.667 21.66 0.00 34.36 2.45
1417 1459 3.435327 GTGAGCGGTCATTTACAACATCA 59.565 43.478 21.66 0.00 34.36 3.07
1431 1473 5.726397 TGTATATGTAAACAAGTGAGCGGT 58.274 37.500 0.00 0.00 0.00 5.68
1432 1474 6.844696 ATGTATATGTAAACAAGTGAGCGG 57.155 37.500 0.00 0.00 0.00 5.52
1468 1512 3.365265 GCGTGCCCAACCCTTCTG 61.365 66.667 0.00 0.00 0.00 3.02
1482 1526 1.007038 CAATGGTGCAGCAAAGCGT 60.007 52.632 24.18 2.34 37.31 5.07
1766 1868 0.823769 CGATCATCTCCCTCACCCGA 60.824 60.000 0.00 0.00 0.00 5.14
1801 1904 6.097554 TCCACCAAATCACCGCATTATAAAAT 59.902 34.615 0.00 0.00 0.00 1.82
1832 1936 2.912690 TAACACGGAATCACACCACA 57.087 45.000 0.00 0.00 0.00 4.17
1845 1949 2.997986 AGGTTGGTTAGCGAATAACACG 59.002 45.455 11.57 0.00 44.81 4.49
1900 2008 6.053632 TGCAGCACCAATATAGTATATGCT 57.946 37.500 9.30 9.30 42.45 3.79
1905 2018 5.494724 CTCCATGCAGCACCAATATAGTAT 58.505 41.667 0.00 0.00 0.00 2.12
1936 2060 1.614317 CCTCCCACCACCTAGCAAAAG 60.614 57.143 0.00 0.00 0.00 2.27
1976 2117 1.940613 GACAGCAACCGGCCTATAAAG 59.059 52.381 0.00 0.00 46.50 1.85
2084 2259 6.814954 AAGATGCCTCCTATTCAGTTCTTA 57.185 37.500 0.00 0.00 0.00 2.10
2096 2273 4.670765 ACAATTTCTCAAAGATGCCTCCT 58.329 39.130 0.00 0.00 0.00 3.69
2102 2281 9.512435 GATATGGTCAACAATTTCTCAAAGATG 57.488 33.333 0.00 0.00 0.00 2.90
2103 2282 9.246670 TGATATGGTCAACAATTTCTCAAAGAT 57.753 29.630 0.00 0.00 32.78 2.40
2258 2440 7.116736 ACTTCAATTGAAATCGGGTTACCTAT 58.883 34.615 20.82 0.00 33.07 2.57
2264 2446 4.407365 AGGACTTCAATTGAAATCGGGTT 58.593 39.130 20.82 5.73 31.65 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.