Multiple sequence alignment - TraesCS2D01G505100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G505100 chr2D 100.000 4331 0 0 1 4331 599155377 599151047 0.000000e+00 7998.0
1 TraesCS2D01G505100 chr2D 89.205 2492 243 15 905 3383 599104939 599102461 0.000000e+00 3088.0
2 TraesCS2D01G505100 chr2D 87.500 2512 253 40 788 3267 599111495 599109013 0.000000e+00 2843.0
3 TraesCS2D01G505100 chr2D 80.835 2155 333 59 912 3031 599220464 599218355 0.000000e+00 1618.0
4 TraesCS2D01G505100 chr2D 95.442 746 18 5 3601 4331 71617605 71618349 0.000000e+00 1175.0
5 TraesCS2D01G505100 chr2D 76.336 2227 430 62 1097 3267 521568449 521566264 0.000000e+00 1103.0
6 TraesCS2D01G505100 chr2D 73.900 2000 420 79 1089 3035 521763251 521761301 0.000000e+00 708.0
7 TraesCS2D01G505100 chr2D 74.084 1856 390 62 1089 2894 521580672 521578858 0.000000e+00 678.0
8 TraesCS2D01G505100 chr2D 92.000 100 7 1 3506 3604 71616739 71616838 5.840000e-29 139.0
9 TraesCS2D01G505100 chr2D 85.470 117 14 3 134 250 601281587 601281474 7.610000e-23 119.0
10 TraesCS2D01G505100 chr2B 89.911 2468 227 15 905 3367 728587170 728584720 0.000000e+00 3158.0
11 TraesCS2D01G505100 chr2B 89.937 2375 212 15 905 3267 728562343 728559984 0.000000e+00 3037.0
12 TraesCS2D01G505100 chr2B 79.443 2369 375 73 921 3242 728611630 728609327 0.000000e+00 1574.0
13 TraesCS2D01G505100 chr3B 89.760 2461 209 27 845 3293 60155602 60158031 0.000000e+00 3109.0
14 TraesCS2D01G505100 chr2A 90.227 2374 214 9 905 3267 733289478 733287112 0.000000e+00 3083.0
15 TraesCS2D01G505100 chr2A 88.130 2401 241 32 888 3267 733344592 733342215 0.000000e+00 2815.0
16 TraesCS2D01G505100 chr2A 80.645 2139 329 59 927 3031 733348995 733346908 0.000000e+00 1578.0
17 TraesCS2D01G505100 chr2A 76.225 2225 436 65 1097 3267 666020965 666023150 0.000000e+00 1092.0
18 TraesCS2D01G505100 chr2A 83.959 293 40 6 4 295 759176680 759176394 1.530000e-69 274.0
19 TraesCS2D01G505100 chr2A 85.542 83 5 6 3396 3477 723836877 723836953 3.590000e-11 80.5
20 TraesCS2D01G505100 chr5D 97.690 736 7 5 3601 4331 445388779 445389509 0.000000e+00 1256.0
21 TraesCS2D01G505100 chr5D 94.355 744 25 7 3601 4331 367405420 367404681 0.000000e+00 1125.0
22 TraesCS2D01G505100 chr5D 90.154 325 24 6 3807 4125 423548799 423548477 2.410000e-112 416.0
23 TraesCS2D01G505100 chr5D 95.050 101 4 1 3505 3604 445387906 445388006 1.610000e-34 158.0
24 TraesCS2D01G505100 chr5D 91.589 107 8 1 3505 3610 367406293 367406187 3.490000e-31 147.0
25 TraesCS2D01G505100 chr5D 96.250 80 1 1 3663 3742 423712674 423712597 3.510000e-26 130.0
26 TraesCS2D01G505100 chr5D 80.723 166 26 5 130 295 390017491 390017650 1.640000e-24 124.0
27 TraesCS2D01G505100 chr5D 94.286 70 4 0 3609 3678 423712768 423712699 1.650000e-19 108.0
28 TraesCS2D01G505100 chr5D 89.655 58 6 0 3398 3455 219947305 219947248 1.670000e-09 75.0
29 TraesCS2D01G505100 chr5D 93.878 49 3 0 3398 3446 490580652 490580604 1.670000e-09 75.0
30 TraesCS2D01G505100 chr5D 94.872 39 2 0 3462 3500 219956066 219956028 1.300000e-05 62.1
31 TraesCS2D01G505100 chr4B 93.767 738 34 10 3601 4331 624574182 624574914 0.000000e+00 1098.0
32 TraesCS2D01G505100 chr4B 78.243 239 28 15 30 263 630447214 630446995 9.770000e-27 132.0
33 TraesCS2D01G505100 chr4B 87.692 65 7 1 3394 3458 249113726 249113663 1.670000e-09 75.0
34 TraesCS2D01G505100 chr5B 93.164 746 31 9 3601 4331 55342458 55341718 0.000000e+00 1077.0
35 TraesCS2D01G505100 chr5B 88.991 109 9 2 3505 3610 55343302 55343194 9.770000e-27 132.0
36 TraesCS2D01G505100 chr5B 75.170 294 43 21 4 290 455744252 455743982 1.270000e-20 111.0
37 TraesCS2D01G505100 chr5B 78.443 167 31 5 130 294 550233309 550233472 2.130000e-18 104.0
38 TraesCS2D01G505100 chr5B 95.000 40 2 0 3461 3500 440273989 440273950 3.620000e-06 63.9
39 TraesCS2D01G505100 chr5B 94.872 39 2 0 3462 3500 609263985 609263947 1.300000e-05 62.1
40 TraesCS2D01G505100 chr1D 85.214 257 27 10 6 258 307695463 307695712 2.000000e-63 254.0
41 TraesCS2D01G505100 chr1D 94.872 39 2 0 3462 3500 30216645 30216607 1.300000e-05 62.1
42 TraesCS2D01G505100 chr1B 85.417 192 17 8 105 295 416774181 416774362 5.720000e-44 189.0
43 TraesCS2D01G505100 chr5A 85.124 121 14 4 131 247 569060504 569060624 2.120000e-23 121.0
44 TraesCS2D01G505100 chr7B 82.192 146 18 6 131 271 637595258 637595400 7.610000e-23 119.0
45 TraesCS2D01G505100 chr7B 87.097 62 6 2 3398 3458 674736309 674736249 7.770000e-08 69.4
46 TraesCS2D01G505100 chr4A 93.548 62 4 0 3397 3458 637015362 637015301 4.610000e-15 93.5
47 TraesCS2D01G505100 chr4A 94.872 39 2 0 3462 3500 739646025 739645987 1.300000e-05 62.1
48 TraesCS2D01G505100 chr1A 86.364 88 8 4 210 295 104431772 104431857 4.610000e-15 93.5
49 TraesCS2D01G505100 chr6A 97.436 39 1 0 3462 3500 19005103 19005065 2.800000e-07 67.6
50 TraesCS2D01G505100 chr6A 94.872 39 2 0 3462 3500 175648807 175648769 1.300000e-05 62.1
51 TraesCS2D01G505100 chr3D 97.297 37 1 0 3464 3500 520449003 520448967 3.620000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G505100 chr2D 599151047 599155377 4330 True 7998.0 7998 100.0000 1 4331 1 chr2D.!!$R6 4330
1 TraesCS2D01G505100 chr2D 599102461 599104939 2478 True 3088.0 3088 89.2050 905 3383 1 chr2D.!!$R4 2478
2 TraesCS2D01G505100 chr2D 599109013 599111495 2482 True 2843.0 2843 87.5000 788 3267 1 chr2D.!!$R5 2479
3 TraesCS2D01G505100 chr2D 599218355 599220464 2109 True 1618.0 1618 80.8350 912 3031 1 chr2D.!!$R7 2119
4 TraesCS2D01G505100 chr2D 521566264 521568449 2185 True 1103.0 1103 76.3360 1097 3267 1 chr2D.!!$R1 2170
5 TraesCS2D01G505100 chr2D 521761301 521763251 1950 True 708.0 708 73.9000 1089 3035 1 chr2D.!!$R3 1946
6 TraesCS2D01G505100 chr2D 521578858 521580672 1814 True 678.0 678 74.0840 1089 2894 1 chr2D.!!$R2 1805
7 TraesCS2D01G505100 chr2D 71616739 71618349 1610 False 657.0 1175 93.7210 3506 4331 2 chr2D.!!$F1 825
8 TraesCS2D01G505100 chr2B 728584720 728587170 2450 True 3158.0 3158 89.9110 905 3367 1 chr2B.!!$R2 2462
9 TraesCS2D01G505100 chr2B 728559984 728562343 2359 True 3037.0 3037 89.9370 905 3267 1 chr2B.!!$R1 2362
10 TraesCS2D01G505100 chr2B 728609327 728611630 2303 True 1574.0 1574 79.4430 921 3242 1 chr2B.!!$R3 2321
11 TraesCS2D01G505100 chr3B 60155602 60158031 2429 False 3109.0 3109 89.7600 845 3293 1 chr3B.!!$F1 2448
12 TraesCS2D01G505100 chr2A 733287112 733289478 2366 True 3083.0 3083 90.2270 905 3267 1 chr2A.!!$R1 2362
13 TraesCS2D01G505100 chr2A 733342215 733348995 6780 True 2196.5 2815 84.3875 888 3267 2 chr2A.!!$R3 2379
14 TraesCS2D01G505100 chr2A 666020965 666023150 2185 False 1092.0 1092 76.2250 1097 3267 1 chr2A.!!$F1 2170
15 TraesCS2D01G505100 chr5D 445387906 445389509 1603 False 707.0 1256 96.3700 3505 4331 2 chr5D.!!$F2 826
16 TraesCS2D01G505100 chr5D 367404681 367406293 1612 True 636.0 1125 92.9720 3505 4331 2 chr5D.!!$R5 826
17 TraesCS2D01G505100 chr4B 624574182 624574914 732 False 1098.0 1098 93.7670 3601 4331 1 chr4B.!!$F1 730
18 TraesCS2D01G505100 chr5B 55341718 55343302 1584 True 604.5 1077 91.0775 3505 4331 2 chr5B.!!$R4 826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
759 760 0.034896 GAAGGAGCACCCGTTTGAGA 59.965 55.0 0.00 0.00 40.87 3.27 F
1061 4617 0.196118 TCCCCCTTCTCACCTTCCTT 59.804 55.0 0.00 0.00 0.00 3.36 F
1979 5579 0.260816 ATGAGGCACCATGGATGCTT 59.739 50.0 27.36 23.46 42.93 3.91 F
2864 6485 0.036164 ACCTCTGCGGCATGTACAAA 59.964 50.0 1.75 0.00 35.61 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2329 5941 0.106335 CTCCACTCCAGCAGCATAGG 59.894 60.000 0.00 0.00 0.00 2.57 R
2564 6185 0.539986 GGATGTTGAAGGTCGGCCTA 59.460 55.000 10.18 0.00 46.33 3.93 R
3126 6747 0.036306 AATCTTCGGGCTTGGTTCGT 59.964 50.000 0.00 0.00 0.00 3.85 R
3799 8239 1.137086 GTGCCCTCTGTCGATGTACAT 59.863 52.381 8.43 8.43 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.698854 ACTGATAAAATTTGCACACAATTAACG 58.301 29.630 0.00 0.00 35.21 3.18
28 29 7.505646 TGATAAAATTTGCACACAATTAACGC 58.494 30.769 0.00 0.00 35.21 4.84
29 30 5.725110 AAAATTTGCACACAATTAACGCA 57.275 30.435 0.00 0.00 35.21 5.24
30 31 5.725110 AAATTTGCACACAATTAACGCAA 57.275 30.435 0.00 0.00 40.59 4.85
33 34 4.768659 TTGCACACAATTAACGCAAAAG 57.231 36.364 0.00 0.00 39.47 2.27
35 36 4.177026 TGCACACAATTAACGCAAAAGTT 58.823 34.783 0.00 0.00 38.07 2.66
36 37 4.032217 TGCACACAATTAACGCAAAAGTTG 59.968 37.500 0.00 0.00 35.70 3.16
75 76 8.962884 ATGCAAGAACACACATATAATAGTCA 57.037 30.769 0.00 0.00 0.00 3.41
76 77 8.785329 TGCAAGAACACACATATAATAGTCAA 57.215 30.769 0.00 0.00 0.00 3.18
77 78 8.882736 TGCAAGAACACACATATAATAGTCAAG 58.117 33.333 0.00 0.00 0.00 3.02
78 79 8.883731 GCAAGAACACACATATAATAGTCAAGT 58.116 33.333 0.00 0.00 0.00 3.16
82 83 9.901724 GAACACACATATAATAGTCAAGTTTCG 57.098 33.333 0.00 0.00 0.00 3.46
83 84 7.906160 ACACACATATAATAGTCAAGTTTCGC 58.094 34.615 0.00 0.00 0.00 4.70
84 85 7.547722 ACACACATATAATAGTCAAGTTTCGCA 59.452 33.333 0.00 0.00 0.00 5.10
86 87 8.941977 ACACATATAATAGTCAAGTTTCGCAAA 58.058 29.630 0.00 0.00 0.00 3.68
87 88 9.767684 CACATATAATAGTCAAGTTTCGCAAAA 57.232 29.630 0.00 0.00 0.00 2.44
111 112 8.492673 AAAAGATGATTGCTACGAAGTAATGA 57.507 30.769 0.00 0.00 45.13 2.57
112 113 8.492673 AAAGATGATTGCTACGAAGTAATGAA 57.507 30.769 0.00 0.00 45.13 2.57
113 114 8.668510 AAGATGATTGCTACGAAGTAATGAAT 57.331 30.769 0.00 0.00 45.13 2.57
115 116 9.764363 AGATGATTGCTACGAAGTAATGAATTA 57.236 29.630 0.00 0.00 45.13 1.40
118 119 8.817100 TGATTGCTACGAAGTAATGAATTAGTG 58.183 33.333 0.00 0.00 45.13 2.74
119 120 7.534085 TTGCTACGAAGTAATGAATTAGTGG 57.466 36.000 0.00 0.00 45.13 4.00
121 122 5.522460 GCTACGAAGTAATGAATTAGTGGCA 59.478 40.000 6.92 0.00 45.13 4.92
123 124 7.384115 GCTACGAAGTAATGAATTAGTGGCATA 59.616 37.037 6.92 0.00 45.13 3.14
125 126 7.272978 ACGAAGTAATGAATTAGTGGCATACT 58.727 34.615 0.00 0.00 41.94 2.12
126 127 8.418662 ACGAAGTAATGAATTAGTGGCATACTA 58.581 33.333 0.00 0.00 41.94 1.82
141 142 8.326529 AGTGGCATACTAATATTGGTATTACCC 58.673 37.037 24.07 20.77 38.04 3.69
142 143 8.326529 GTGGCATACTAATATTGGTATTACCCT 58.673 37.037 24.07 6.54 37.50 4.34
143 144 8.896658 TGGCATACTAATATTGGTATTACCCTT 58.103 33.333 24.07 6.01 37.50 3.95
144 145 9.749340 GGCATACTAATATTGGTATTACCCTTT 57.251 33.333 18.79 0.00 37.50 3.11
217 218 9.807921 TTTCCTAAGAAAGAATGAATTAGTGGT 57.192 29.630 0.00 0.00 37.07 4.16
223 224 9.533831 AAGAAAGAATGAATTAGTGGTATTGGT 57.466 29.630 0.00 0.00 0.00 3.67
252 253 8.491045 ACCATTTAAGAAGAAAGAAATTGGGA 57.509 30.769 0.00 0.00 0.00 4.37
253 254 8.933653 ACCATTTAAGAAGAAAGAAATTGGGAA 58.066 29.630 0.00 0.00 0.00 3.97
254 255 9.777297 CCATTTAAGAAGAAAGAAATTGGGAAA 57.223 29.630 0.00 0.00 0.00 3.13
272 273 7.531857 TGGGAAACAATATCTAAAGCAAACA 57.468 32.000 0.00 0.00 0.00 2.83
273 274 7.601856 TGGGAAACAATATCTAAAGCAAACAG 58.398 34.615 0.00 0.00 0.00 3.16
274 275 7.232534 TGGGAAACAATATCTAAAGCAAACAGT 59.767 33.333 0.00 0.00 0.00 3.55
275 276 7.542130 GGGAAACAATATCTAAAGCAAACAGTG 59.458 37.037 0.00 0.00 0.00 3.66
279 280 9.502091 AACAATATCTAAAGCAAACAGTGACTA 57.498 29.630 0.00 0.00 0.00 2.59
280 281 9.502091 ACAATATCTAAAGCAAACAGTGACTAA 57.498 29.630 0.00 0.00 0.00 2.24
285 286 9.683069 ATCTAAAGCAAACAGTGACTAAATTTG 57.317 29.630 0.00 10.22 34.17 2.32
290 291 6.884096 CAAACAGTGACTAAATTTGCACAA 57.116 33.333 17.29 0.00 33.85 3.33
291 292 7.288317 CAAACAGTGACTAAATTTGCACAAA 57.712 32.000 17.29 0.00 33.85 2.83
292 293 7.737395 CAAACAGTGACTAAATTTGCACAAAA 58.263 30.769 17.29 0.00 33.56 2.44
293 294 8.389603 CAAACAGTGACTAAATTTGCACAAAAT 58.610 29.630 17.29 0.00 40.32 1.82
294 295 9.593134 AAACAGTGACTAAATTTGCACAAAATA 57.407 25.926 17.29 0.00 37.51 1.40
295 296 9.593134 AACAGTGACTAAATTTGCACAAAATAA 57.407 25.926 17.29 0.00 37.51 1.40
296 297 9.762933 ACAGTGACTAAATTTGCACAAAATAAT 57.237 25.926 17.29 0.00 37.51 1.28
322 323 5.061179 AGTTAAACAATGAAGTAGTGGCGT 58.939 37.500 0.00 0.00 0.00 5.68
323 324 5.529800 AGTTAAACAATGAAGTAGTGGCGTT 59.470 36.000 0.00 0.00 0.00 4.84
326 327 2.151202 CAATGAAGTAGTGGCGTTGGT 58.849 47.619 0.00 0.00 0.00 3.67
328 329 3.906720 ATGAAGTAGTGGCGTTGGTAT 57.093 42.857 0.00 0.00 0.00 2.73
329 330 3.688694 TGAAGTAGTGGCGTTGGTATT 57.311 42.857 0.00 0.00 0.00 1.89
332 333 2.981898 AGTAGTGGCGTTGGTATTTCC 58.018 47.619 0.00 0.00 0.00 3.13
333 334 2.011947 GTAGTGGCGTTGGTATTTCCC 58.988 52.381 0.00 0.00 34.77 3.97
334 335 0.696501 AGTGGCGTTGGTATTTCCCT 59.303 50.000 0.00 0.00 34.77 4.20
335 336 1.910671 AGTGGCGTTGGTATTTCCCTA 59.089 47.619 0.00 0.00 34.77 3.53
336 337 2.306512 AGTGGCGTTGGTATTTCCCTAA 59.693 45.455 0.00 0.00 34.77 2.69
337 338 3.083293 GTGGCGTTGGTATTTCCCTAAA 58.917 45.455 0.00 0.00 34.77 1.85
339 340 3.009253 TGGCGTTGGTATTTCCCTAAAGA 59.991 43.478 0.00 0.00 34.77 2.52
340 341 4.011698 GGCGTTGGTATTTCCCTAAAGAA 58.988 43.478 0.00 0.00 34.77 2.52
341 342 4.095932 GGCGTTGGTATTTCCCTAAAGAAG 59.904 45.833 0.00 0.00 34.77 2.85
342 343 4.939439 GCGTTGGTATTTCCCTAAAGAAGA 59.061 41.667 0.00 0.00 34.77 2.87
343 344 5.413523 GCGTTGGTATTTCCCTAAAGAAGAA 59.586 40.000 0.00 0.00 34.77 2.52
344 345 6.072342 GCGTTGGTATTTCCCTAAAGAAGAAA 60.072 38.462 0.00 0.00 34.26 2.52
345 346 7.362660 GCGTTGGTATTTCCCTAAAGAAGAAAT 60.363 37.037 10.70 10.70 41.70 2.17
346 347 9.169592 CGTTGGTATTTCCCTAAAGAAGAAATA 57.830 33.333 9.36 9.36 40.00 1.40
380 381 3.367992 TGCATCGAAATTGCACACTTT 57.632 38.095 8.06 0.00 44.73 2.66
382 383 3.490155 TGCATCGAAATTGCACACTTTTG 59.510 39.130 8.06 0.00 44.73 2.44
385 386 5.164158 GCATCGAAATTGCACACTTTTGTAG 60.164 40.000 4.64 0.00 39.90 2.74
386 387 5.493133 TCGAAATTGCACACTTTTGTAGT 57.507 34.783 0.00 0.00 37.68 2.73
387 388 6.606234 TCGAAATTGCACACTTTTGTAGTA 57.394 33.333 0.00 0.00 34.56 1.82
388 389 7.197071 TCGAAATTGCACACTTTTGTAGTAT 57.803 32.000 0.00 0.00 34.56 2.12
389 390 7.075121 TCGAAATTGCACACTTTTGTAGTATG 58.925 34.615 0.00 0.00 34.30 2.39
473 474 9.680315 GTATATATGTATCCTCGCTAAACATCC 57.320 37.037 0.00 0.00 33.15 3.51
474 475 3.746045 TGTATCCTCGCTAAACATCCC 57.254 47.619 0.00 0.00 0.00 3.85
475 476 3.035363 TGTATCCTCGCTAAACATCCCA 58.965 45.455 0.00 0.00 0.00 4.37
476 477 2.918712 ATCCTCGCTAAACATCCCAG 57.081 50.000 0.00 0.00 0.00 4.45
477 478 1.860641 TCCTCGCTAAACATCCCAGA 58.139 50.000 0.00 0.00 0.00 3.86
478 479 2.184533 TCCTCGCTAAACATCCCAGAA 58.815 47.619 0.00 0.00 0.00 3.02
481 482 4.407621 TCCTCGCTAAACATCCCAGAAATA 59.592 41.667 0.00 0.00 0.00 1.40
482 483 4.511826 CCTCGCTAAACATCCCAGAAATAC 59.488 45.833 0.00 0.00 0.00 1.89
483 484 4.448210 TCGCTAAACATCCCAGAAATACC 58.552 43.478 0.00 0.00 0.00 2.73
484 485 3.564225 CGCTAAACATCCCAGAAATACCC 59.436 47.826 0.00 0.00 0.00 3.69
485 486 4.532834 GCTAAACATCCCAGAAATACCCA 58.467 43.478 0.00 0.00 0.00 4.51
486 487 4.338400 GCTAAACATCCCAGAAATACCCAC 59.662 45.833 0.00 0.00 0.00 4.61
487 488 3.382083 AACATCCCAGAAATACCCACC 57.618 47.619 0.00 0.00 0.00 4.61
488 489 2.283834 ACATCCCAGAAATACCCACCA 58.716 47.619 0.00 0.00 0.00 4.17
489 490 2.025321 ACATCCCAGAAATACCCACCAC 60.025 50.000 0.00 0.00 0.00 4.16
491 492 0.701731 CCCAGAAATACCCACCACCA 59.298 55.000 0.00 0.00 0.00 4.17
493 494 2.292192 CCCAGAAATACCCACCACCAAT 60.292 50.000 0.00 0.00 0.00 3.16
494 495 3.440127 CCAGAAATACCCACCACCAATT 58.560 45.455 0.00 0.00 0.00 2.32
495 496 4.570933 CCCAGAAATACCCACCACCAATTA 60.571 45.833 0.00 0.00 0.00 1.40
496 497 5.020132 CCAGAAATACCCACCACCAATTAA 58.980 41.667 0.00 0.00 0.00 1.40
497 498 5.660864 CCAGAAATACCCACCACCAATTAAT 59.339 40.000 0.00 0.00 0.00 1.40
499 500 6.154363 CAGAAATACCCACCACCAATTAATGT 59.846 38.462 0.00 0.00 0.00 2.71
500 501 7.340743 CAGAAATACCCACCACCAATTAATGTA 59.659 37.037 0.00 0.00 0.00 2.29
501 502 7.559897 AGAAATACCCACCACCAATTAATGTAG 59.440 37.037 0.00 0.00 0.00 2.74
502 503 4.938575 ACCCACCACCAATTAATGTAGA 57.061 40.909 0.00 0.00 0.00 2.59
503 504 4.855340 ACCCACCACCAATTAATGTAGAG 58.145 43.478 0.00 0.00 0.00 2.43
504 505 4.538490 ACCCACCACCAATTAATGTAGAGA 59.462 41.667 0.00 0.00 0.00 3.10
506 507 4.570772 CCACCACCAATTAATGTAGAGACG 59.429 45.833 0.00 0.00 0.00 4.18
507 508 5.416083 CACCACCAATTAATGTAGAGACGA 58.584 41.667 0.00 0.00 0.00 4.20
508 509 5.872617 CACCACCAATTAATGTAGAGACGAA 59.127 40.000 0.00 0.00 0.00 3.85
509 510 6.036083 CACCACCAATTAATGTAGAGACGAAG 59.964 42.308 0.00 0.00 0.00 3.79
511 512 6.816640 CCACCAATTAATGTAGAGACGAAGAA 59.183 38.462 0.00 0.00 0.00 2.52
512 513 7.333423 CCACCAATTAATGTAGAGACGAAGAAA 59.667 37.037 0.00 0.00 0.00 2.52
514 515 8.936864 ACCAATTAATGTAGAGACGAAGAAAAG 58.063 33.333 0.00 0.00 0.00 2.27
515 516 9.151471 CCAATTAATGTAGAGACGAAGAAAAGA 57.849 33.333 0.00 0.00 0.00 2.52
521 522 9.884465 AATGTAGAGACGAAGAAAAGAAAAATG 57.116 29.630 0.00 0.00 0.00 2.32
522 523 7.352739 TGTAGAGACGAAGAAAAGAAAAATGC 58.647 34.615 0.00 0.00 0.00 3.56
523 524 6.377327 AGAGACGAAGAAAAGAAAAATGCA 57.623 33.333 0.00 0.00 0.00 3.96
524 525 6.974965 AGAGACGAAGAAAAGAAAAATGCAT 58.025 32.000 0.00 0.00 0.00 3.96
525 526 8.099364 AGAGACGAAGAAAAGAAAAATGCATA 57.901 30.769 0.00 0.00 0.00 3.14
526 527 8.567948 AGAGACGAAGAAAAGAAAAATGCATAA 58.432 29.630 0.00 0.00 0.00 1.90
527 528 9.180678 GAGACGAAGAAAAGAAAAATGCATAAA 57.819 29.630 0.00 0.00 0.00 1.40
528 529 9.528018 AGACGAAGAAAAGAAAAATGCATAAAA 57.472 25.926 0.00 0.00 0.00 1.52
552 553 9.665719 AAAATAGAAAACAGAAAAAGCAAAGGA 57.334 25.926 0.00 0.00 0.00 3.36
553 554 8.877808 AATAGAAAACAGAAAAAGCAAAGGAG 57.122 30.769 0.00 0.00 0.00 3.69
556 557 7.386059 AGAAAACAGAAAAAGCAAAGGAGAAA 58.614 30.769 0.00 0.00 0.00 2.52
557 558 7.547019 AGAAAACAGAAAAAGCAAAGGAGAAAG 59.453 33.333 0.00 0.00 0.00 2.62
558 559 6.530019 AACAGAAAAAGCAAAGGAGAAAGA 57.470 33.333 0.00 0.00 0.00 2.52
559 560 6.530019 ACAGAAAAAGCAAAGGAGAAAGAA 57.470 33.333 0.00 0.00 0.00 2.52
560 561 6.567959 ACAGAAAAAGCAAAGGAGAAAGAAG 58.432 36.000 0.00 0.00 0.00 2.85
564 565 4.713792 AAGCAAAGGAGAAAGAAGAGGA 57.286 40.909 0.00 0.00 0.00 3.71
565 566 4.713792 AGCAAAGGAGAAAGAAGAGGAA 57.286 40.909 0.00 0.00 0.00 3.36
566 567 5.253991 AGCAAAGGAGAAAGAAGAGGAAT 57.746 39.130 0.00 0.00 0.00 3.01
569 570 4.582973 AAGGAGAAAGAAGAGGAATGGG 57.417 45.455 0.00 0.00 0.00 4.00
570 571 2.240921 AGGAGAAAGAAGAGGAATGGGC 59.759 50.000 0.00 0.00 0.00 5.36
571 572 2.240921 GGAGAAAGAAGAGGAATGGGCT 59.759 50.000 0.00 0.00 0.00 5.19
572 573 3.308760 GGAGAAAGAAGAGGAATGGGCTT 60.309 47.826 0.00 0.00 0.00 4.35
573 574 3.944650 GAGAAAGAAGAGGAATGGGCTTC 59.055 47.826 0.00 0.00 38.58 3.86
574 575 2.409948 AAGAAGAGGAATGGGCTTCG 57.590 50.000 0.00 0.00 42.07 3.79
575 576 0.543749 AGAAGAGGAATGGGCTTCGG 59.456 55.000 0.00 0.00 42.07 4.30
576 577 1.077429 AAGAGGAATGGGCTTCGGC 60.077 57.895 0.00 0.00 40.88 5.54
588 589 1.739067 GCTTCGGCCTGTTAATGAGT 58.261 50.000 0.00 0.00 34.32 3.41
589 590 2.084546 GCTTCGGCCTGTTAATGAGTT 58.915 47.619 0.00 0.00 34.32 3.01
590 591 2.096013 GCTTCGGCCTGTTAATGAGTTC 59.904 50.000 0.00 0.00 34.32 3.01
591 592 3.600388 CTTCGGCCTGTTAATGAGTTCT 58.400 45.455 0.00 0.00 0.00 3.01
592 593 4.755411 CTTCGGCCTGTTAATGAGTTCTA 58.245 43.478 0.00 0.00 0.00 2.10
593 594 4.386867 TCGGCCTGTTAATGAGTTCTAG 57.613 45.455 0.00 0.00 0.00 2.43
594 595 2.866762 CGGCCTGTTAATGAGTTCTAGC 59.133 50.000 0.00 0.00 0.00 3.42
595 596 3.678806 CGGCCTGTTAATGAGTTCTAGCA 60.679 47.826 0.00 0.00 0.00 3.49
598 599 5.183140 GGCCTGTTAATGAGTTCTAGCAAAA 59.817 40.000 0.00 0.00 0.00 2.44
599 600 6.086871 GCCTGTTAATGAGTTCTAGCAAAAC 58.913 40.000 0.00 0.00 0.00 2.43
600 601 6.072452 GCCTGTTAATGAGTTCTAGCAAAACT 60.072 38.462 0.00 0.00 39.61 2.66
601 602 7.119262 GCCTGTTAATGAGTTCTAGCAAAACTA 59.881 37.037 0.00 0.00 37.10 2.24
602 603 8.999431 CCTGTTAATGAGTTCTAGCAAAACTAA 58.001 33.333 0.00 0.00 37.10 2.24
603 604 9.813080 CTGTTAATGAGTTCTAGCAAAACTAAC 57.187 33.333 0.00 0.00 37.10 2.34
604 605 9.332502 TGTTAATGAGTTCTAGCAAAACTAACA 57.667 29.630 5.43 5.43 37.10 2.41
629 630 6.870971 AAAAAGTACACGGATCTTAAAGCA 57.129 33.333 0.00 0.00 0.00 3.91
630 631 6.481954 AAAAGTACACGGATCTTAAAGCAG 57.518 37.500 0.00 0.00 0.00 4.24
631 632 5.401531 AAGTACACGGATCTTAAAGCAGA 57.598 39.130 0.00 0.00 0.00 4.26
632 633 5.401531 AGTACACGGATCTTAAAGCAGAA 57.598 39.130 0.00 0.00 0.00 3.02
633 634 5.790593 AGTACACGGATCTTAAAGCAGAAA 58.209 37.500 0.00 0.00 0.00 2.52
635 636 5.803020 ACACGGATCTTAAAGCAGAAATC 57.197 39.130 0.00 0.00 0.00 2.17
636 637 5.245531 ACACGGATCTTAAAGCAGAAATCA 58.754 37.500 0.00 0.00 0.00 2.57
637 638 5.705441 ACACGGATCTTAAAGCAGAAATCAA 59.295 36.000 0.00 0.00 0.00 2.57
639 640 6.690098 CACGGATCTTAAAGCAGAAATCAATG 59.310 38.462 0.00 0.00 0.00 2.82
640 641 6.599244 ACGGATCTTAAAGCAGAAATCAATGA 59.401 34.615 0.00 0.00 0.00 2.57
641 642 6.909357 CGGATCTTAAAGCAGAAATCAATGAC 59.091 38.462 0.00 0.00 0.00 3.06
643 644 6.182039 TCTTAAAGCAGAAATCAATGACCG 57.818 37.500 0.00 0.00 0.00 4.79
644 645 5.937540 TCTTAAAGCAGAAATCAATGACCGA 59.062 36.000 0.00 0.00 0.00 4.69
645 646 6.429692 TCTTAAAGCAGAAATCAATGACCGAA 59.570 34.615 0.00 0.00 0.00 4.30
646 647 5.452078 AAAGCAGAAATCAATGACCGAAA 57.548 34.783 0.00 0.00 0.00 3.46
647 648 5.452078 AAGCAGAAATCAATGACCGAAAA 57.548 34.783 0.00 0.00 0.00 2.29
648 649 5.452078 AGCAGAAATCAATGACCGAAAAA 57.548 34.783 0.00 0.00 0.00 1.94
672 673 8.750515 AAAAATCAACAGATCCAAACCAAATT 57.249 26.923 0.00 0.00 0.00 1.82
673 674 8.750515 AAAATCAACAGATCCAAACCAAATTT 57.249 26.923 0.00 0.00 0.00 1.82
674 675 8.750515 AAATCAACAGATCCAAACCAAATTTT 57.249 26.923 0.00 0.00 0.00 1.82
675 676 7.967890 ATCAACAGATCCAAACCAAATTTTC 57.032 32.000 0.00 0.00 0.00 2.29
676 677 6.882656 TCAACAGATCCAAACCAAATTTTCA 58.117 32.000 0.00 0.00 0.00 2.69
677 678 6.985645 TCAACAGATCCAAACCAAATTTTCAG 59.014 34.615 0.00 0.00 0.00 3.02
678 679 6.729690 ACAGATCCAAACCAAATTTTCAGA 57.270 33.333 0.00 0.00 0.00 3.27
679 680 6.515832 ACAGATCCAAACCAAATTTTCAGAC 58.484 36.000 0.00 0.00 0.00 3.51
680 681 5.630680 CAGATCCAAACCAAATTTTCAGACG 59.369 40.000 0.00 0.00 0.00 4.18
682 683 5.782893 TCCAAACCAAATTTTCAGACGAT 57.217 34.783 0.00 0.00 0.00 3.73
683 684 6.155475 TCCAAACCAAATTTTCAGACGATT 57.845 33.333 0.00 0.00 0.00 3.34
684 685 6.578023 TCCAAACCAAATTTTCAGACGATTT 58.422 32.000 0.00 0.00 0.00 2.17
685 686 7.717568 TCCAAACCAAATTTTCAGACGATTTA 58.282 30.769 0.00 0.00 0.00 1.40
686 687 7.650104 TCCAAACCAAATTTTCAGACGATTTAC 59.350 33.333 0.00 0.00 0.00 2.01
687 688 7.436673 CCAAACCAAATTTTCAGACGATTTACA 59.563 33.333 0.00 0.00 0.00 2.41
688 689 8.977505 CAAACCAAATTTTCAGACGATTTACAT 58.022 29.630 0.00 0.00 0.00 2.29
729 730 9.772973 AACCTAAACTTTCAATTATTTTGGGAC 57.227 29.630 2.23 0.00 33.34 4.46
730 731 8.085909 ACCTAAACTTTCAATTATTTTGGGACG 58.914 33.333 2.23 0.00 33.34 4.79
732 733 6.658188 AACTTTCAATTATTTTGGGACGGA 57.342 33.333 0.00 0.00 0.00 4.69
733 734 6.267496 ACTTTCAATTATTTTGGGACGGAG 57.733 37.500 0.00 0.00 0.00 4.63
734 735 5.185056 ACTTTCAATTATTTTGGGACGGAGG 59.815 40.000 0.00 0.00 0.00 4.30
736 737 4.924625 TCAATTATTTTGGGACGGAGGAA 58.075 39.130 0.00 0.00 0.00 3.36
737 738 5.515106 TCAATTATTTTGGGACGGAGGAAT 58.485 37.500 0.00 0.00 0.00 3.01
738 739 6.664714 TCAATTATTTTGGGACGGAGGAATA 58.335 36.000 0.00 0.00 0.00 1.75
740 741 2.389962 TTTTGGGACGGAGGAATACG 57.610 50.000 0.00 0.00 0.00 3.06
742 743 1.559368 TTGGGACGGAGGAATACGAA 58.441 50.000 0.00 0.00 0.00 3.85
745 746 1.396653 GGACGGAGGAATACGAAGGA 58.603 55.000 0.00 0.00 0.00 3.36
746 747 1.337387 GGACGGAGGAATACGAAGGAG 59.663 57.143 0.00 0.00 0.00 3.69
748 749 0.744874 CGGAGGAATACGAAGGAGCA 59.255 55.000 0.00 0.00 0.00 4.26
749 750 1.536284 CGGAGGAATACGAAGGAGCAC 60.536 57.143 0.00 0.00 0.00 4.40
751 752 0.831307 AGGAATACGAAGGAGCACCC 59.169 55.000 0.00 0.00 36.73 4.61
752 753 0.529992 GGAATACGAAGGAGCACCCG 60.530 60.000 0.00 0.00 40.87 5.28
753 754 0.175073 GAATACGAAGGAGCACCCGT 59.825 55.000 9.18 9.18 40.87 5.28
754 755 0.611714 AATACGAAGGAGCACCCGTT 59.388 50.000 9.45 0.00 40.87 4.44
755 756 0.611714 ATACGAAGGAGCACCCGTTT 59.388 50.000 9.45 0.31 40.87 3.60
757 758 1.301401 CGAAGGAGCACCCGTTTGA 60.301 57.895 0.00 0.00 40.87 2.69
758 759 1.291877 CGAAGGAGCACCCGTTTGAG 61.292 60.000 0.00 0.00 40.87 3.02
759 760 0.034896 GAAGGAGCACCCGTTTGAGA 59.965 55.000 0.00 0.00 40.87 3.27
761 762 1.122019 AGGAGCACCCGTTTGAGAGT 61.122 55.000 0.00 0.00 40.87 3.24
763 764 0.670854 GAGCACCCGTTTGAGAGTCC 60.671 60.000 0.00 0.00 0.00 3.85
764 765 1.070786 GCACCCGTTTGAGAGTCCA 59.929 57.895 0.00 0.00 0.00 4.02
765 766 0.321653 GCACCCGTTTGAGAGTCCAT 60.322 55.000 0.00 0.00 0.00 3.41
766 767 1.442769 CACCCGTTTGAGAGTCCATG 58.557 55.000 0.00 0.00 0.00 3.66
767 768 1.001974 CACCCGTTTGAGAGTCCATGA 59.998 52.381 0.00 0.00 0.00 3.07
769 770 1.406069 CCCGTTTGAGAGTCCATGAGG 60.406 57.143 0.00 0.00 0.00 3.86
770 771 1.363744 CGTTTGAGAGTCCATGAGGC 58.636 55.000 0.00 0.00 33.74 4.70
771 772 1.066573 CGTTTGAGAGTCCATGAGGCT 60.067 52.381 0.00 0.00 33.74 4.58
772 773 2.626840 GTTTGAGAGTCCATGAGGCTC 58.373 52.381 7.79 7.79 37.94 4.70
773 774 1.942776 TTGAGAGTCCATGAGGCTCA 58.057 50.000 21.19 21.19 39.23 4.26
774 775 2.171568 TGAGAGTCCATGAGGCTCAT 57.828 50.000 24.01 24.01 39.23 2.90
785 786 1.098869 GAGGCTCATGACACTCTCGA 58.901 55.000 10.25 0.00 0.00 4.04
786 787 1.680735 GAGGCTCATGACACTCTCGAT 59.319 52.381 10.25 0.00 0.00 3.59
854 862 5.353938 CAACCAATCATCCATCACCATTTC 58.646 41.667 0.00 0.00 0.00 2.17
861 869 4.225717 TCATCCATCACCATTTCTCTGTCA 59.774 41.667 0.00 0.00 0.00 3.58
868 876 2.169352 ACCATTTCTCTGTCATCCTCGG 59.831 50.000 0.00 0.00 0.00 4.63
870 878 3.452474 CATTTCTCTGTCATCCTCGGAC 58.548 50.000 0.00 0.00 35.83 4.79
877 885 2.427095 CTGTCATCCTCGGACACATGTA 59.573 50.000 0.00 0.00 40.16 2.29
881 889 1.758936 TCCTCGGACACATGTATCGT 58.241 50.000 0.00 0.00 0.00 3.73
882 890 1.674441 TCCTCGGACACATGTATCGTC 59.326 52.381 0.00 1.72 0.00 4.20
883 891 1.676529 CCTCGGACACATGTATCGTCT 59.323 52.381 12.88 0.00 0.00 4.18
884 892 2.541794 CCTCGGACACATGTATCGTCTG 60.542 54.545 14.55 14.55 37.38 3.51
885 893 1.200483 CGGACACATGTATCGTCTGC 58.800 55.000 12.88 0.00 0.00 4.26
886 894 1.571919 GGACACATGTATCGTCTGCC 58.428 55.000 12.88 0.00 0.00 4.85
887 895 1.137086 GGACACATGTATCGTCTGCCT 59.863 52.381 12.88 0.00 0.00 4.75
888 896 2.464865 GACACATGTATCGTCTGCCTC 58.535 52.381 0.00 0.00 0.00 4.70
889 897 1.137086 ACACATGTATCGTCTGCCTCC 59.863 52.381 0.00 0.00 0.00 4.30
890 898 0.753262 ACATGTATCGTCTGCCTCCC 59.247 55.000 0.00 0.00 0.00 4.30
891 899 1.043816 CATGTATCGTCTGCCTCCCT 58.956 55.000 0.00 0.00 0.00 4.20
919 4454 0.820871 GCTCCTTGTCTCTCGACCAT 59.179 55.000 0.00 0.00 39.47 3.55
932 4471 0.937304 CGACCATAACAATGCCTCCG 59.063 55.000 0.00 0.00 0.00 4.63
947 4486 2.874457 GCCTCCGGCTAGAACAAGAAAA 60.874 50.000 0.00 0.00 46.69 2.29
1012 4568 6.519679 TTGGACGTAGCAGAAGTAATTAGA 57.480 37.500 0.00 0.00 0.00 2.10
1061 4617 0.196118 TCCCCCTTCTCACCTTCCTT 59.804 55.000 0.00 0.00 0.00 3.36
1082 4647 2.434884 CTCGCCATTGTCACCGCT 60.435 61.111 0.00 0.00 0.00 5.52
1130 4701 4.329545 GTGCAGCCCCAGGACGAA 62.330 66.667 0.00 0.00 0.00 3.85
1275 4846 2.676822 AGCTCGAAGCCGTCTCCA 60.677 61.111 3.66 0.00 43.77 3.86
1277 4848 2.962569 CTCGAAGCCGTCTCCACA 59.037 61.111 0.00 0.00 37.05 4.17
1572 5149 1.579964 CTTCATCAGCAGCGGCAACA 61.580 55.000 12.44 0.00 44.61 3.33
1751 5345 2.319136 TGTACAAGGTTTGTGACGCT 57.681 45.000 4.78 0.00 45.03 5.07
1979 5579 0.260816 ATGAGGCACCATGGATGCTT 59.739 50.000 27.36 23.46 42.93 3.91
1985 5585 1.750193 CACCATGGATGCTTACCGTT 58.250 50.000 21.47 0.00 0.00 4.44
2018 5618 2.032634 GGACCGTTTGATCAGCGCA 61.033 57.895 11.47 0.00 0.00 6.09
2019 5619 1.132640 GACCGTTTGATCAGCGCAC 59.867 57.895 11.47 0.00 0.00 5.34
2028 5628 0.950555 GATCAGCGCACAAGTGACCA 60.951 55.000 11.47 0.00 0.00 4.02
2144 5753 0.606401 CCGTCCAGTTCTGTGGCAAT 60.606 55.000 0.00 0.00 37.53 3.56
2281 5893 2.093306 GGCAACCAATTTTACCAGGC 57.907 50.000 0.00 0.00 0.00 4.85
2381 5993 0.320946 TCAATTCCACGACGAACCCC 60.321 55.000 0.00 0.00 0.00 4.95
2399 6011 3.051880 ACCCCATGGCAAATATCTCCTTT 60.052 43.478 6.09 0.00 33.59 3.11
2450 6062 2.235898 GCCAGTCATCACCTTCTTCTCT 59.764 50.000 0.00 0.00 0.00 3.10
2564 6185 2.125673 CCGCCGTCGATTGACCTT 60.126 61.111 7.54 0.00 42.37 3.50
2594 6215 1.191489 TCAACATCCTCTCCGGCACA 61.191 55.000 0.00 0.00 0.00 4.57
2789 6410 1.227943 CGGCCATGTCAATCCGGAT 60.228 57.895 12.38 12.38 38.35 4.18
2864 6485 0.036164 ACCTCTGCGGCATGTACAAA 59.964 50.000 1.75 0.00 35.61 2.83
2867 6488 1.806542 CTCTGCGGCATGTACAAAAGT 59.193 47.619 1.75 0.00 0.00 2.66
2912 6533 1.302752 TGCTGTGAATTGCTCGGCT 60.303 52.632 0.00 0.00 41.71 5.52
3065 6686 2.847327 TATACTACCCCGAGGTCGAG 57.153 55.000 0.00 0.00 46.45 4.04
3068 6689 0.258194 ACTACCCCGAGGTCGAGATT 59.742 55.000 0.00 0.00 46.45 2.40
3092 6713 1.069765 AGACAGCCCTGTGAACGTG 59.930 57.895 5.53 0.00 45.05 4.49
3105 6726 2.011222 TGAACGTGACTGTTTTCCCAC 58.989 47.619 0.00 0.00 30.75 4.61
3106 6727 1.332686 GAACGTGACTGTTTTCCCACC 59.667 52.381 0.00 0.00 30.75 4.61
3126 6747 0.241213 CGAGCTTCTGTTCACCGAGA 59.759 55.000 0.00 0.00 0.00 4.04
3136 6757 0.599204 TTCACCGAGACGAACCAAGC 60.599 55.000 0.00 0.00 0.00 4.01
3139 6760 2.809601 CGAGACGAACCAAGCCCG 60.810 66.667 0.00 0.00 0.00 6.13
3142 6763 1.004918 AGACGAACCAAGCCCGAAG 60.005 57.895 0.00 0.00 0.00 3.79
3181 6802 3.793144 GAAGAACAGCAGCGCCGG 61.793 66.667 2.29 0.00 0.00 6.13
3223 6847 4.792087 GGTGTCGGACAACCACAT 57.208 55.556 15.28 0.00 35.59 3.21
3255 6879 1.338105 CCATCTCAGTCACCTTTGCGA 60.338 52.381 0.00 0.00 0.00 5.10
3274 6898 2.260481 GACACACTAGAGCTTTACCGC 58.740 52.381 0.00 0.00 0.00 5.68
3276 6900 0.535797 ACACTAGAGCTTTACCGCCC 59.464 55.000 0.00 0.00 0.00 6.13
3278 6902 1.067582 CTAGAGCTTTACCGCCCCG 59.932 63.158 0.00 0.00 0.00 5.73
3283 6907 2.125269 CTTTACCGCCCCGACAGG 60.125 66.667 0.00 0.00 37.24 4.00
3298 6922 3.879844 AGGTACGTTGCCTGACCA 58.120 55.556 10.10 0.00 34.56 4.02
3302 6936 1.641577 GTACGTTGCCTGACCATCTC 58.358 55.000 0.00 0.00 0.00 2.75
3303 6937 0.172578 TACGTTGCCTGACCATCTCG 59.827 55.000 0.00 0.00 0.00 4.04
3304 6938 1.215382 CGTTGCCTGACCATCTCGA 59.785 57.895 0.00 0.00 0.00 4.04
3305 6939 1.078759 CGTTGCCTGACCATCTCGAC 61.079 60.000 0.00 0.00 0.00 4.20
3306 6940 0.037326 GTTGCCTGACCATCTCGACA 60.037 55.000 0.00 0.00 0.00 4.35
3307 6941 0.684535 TTGCCTGACCATCTCGACAA 59.315 50.000 0.00 0.00 0.00 3.18
3313 6947 1.338655 TGACCATCTCGACAACGACAA 59.661 47.619 0.00 0.00 43.81 3.18
3316 6950 2.223971 ACCATCTCGACAACGACAAGTT 60.224 45.455 0.00 0.00 43.81 2.66
3345 6980 7.041107 GCTGGAATAAAAATGTAGCCATTCAA 58.959 34.615 0.00 0.00 40.42 2.69
3351 6986 8.776376 ATAAAAATGTAGCCATTCAAGTTTGG 57.224 30.769 0.00 0.00 40.42 3.28
3352 6987 4.806640 AATGTAGCCATTCAAGTTTGGG 57.193 40.909 0.00 0.00 36.56 4.12
3360 6995 4.370917 CCATTCAAGTTTGGGTTGAAGTG 58.629 43.478 4.73 3.84 44.85 3.16
3367 7002 3.119137 AGTTTGGGTTGAAGTGTCAAAGC 60.119 43.478 0.00 0.00 45.29 3.51
3368 7003 1.021202 TGGGTTGAAGTGTCAAAGCG 58.979 50.000 0.00 0.00 45.29 4.68
3369 7004 1.305201 GGGTTGAAGTGTCAAAGCGA 58.695 50.000 0.00 0.00 45.29 4.93
3372 7007 2.612212 GGTTGAAGTGTCAAAGCGAAGA 59.388 45.455 0.00 0.00 45.29 2.87
3396 7031 9.434420 AGAGTAAATCTTCAAGATCAAGACTTG 57.566 33.333 9.03 9.03 43.92 3.16
3397 7032 9.213799 GAGTAAATCTTCAAGATCAAGACTTGT 57.786 33.333 14.75 2.81 43.30 3.16
3398 7033 8.997323 AGTAAATCTTCAAGATCAAGACTTGTG 58.003 33.333 14.75 6.18 43.30 3.33
3399 7034 7.814264 AAATCTTCAAGATCAAGACTTGTGT 57.186 32.000 14.75 5.44 43.30 3.72
3400 7035 7.814264 AATCTTCAAGATCAAGACTTGTGTT 57.186 32.000 14.75 5.02 43.30 3.32
3401 7036 8.908786 AATCTTCAAGATCAAGACTTGTGTTA 57.091 30.769 14.75 0.00 43.30 2.41
3402 7037 7.953158 TCTTCAAGATCAAGACTTGTGTTAG 57.047 36.000 14.75 8.05 43.30 2.34
3403 7038 7.726216 TCTTCAAGATCAAGACTTGTGTTAGA 58.274 34.615 14.75 9.80 43.30 2.10
3404 7039 7.869937 TCTTCAAGATCAAGACTTGTGTTAGAG 59.130 37.037 14.75 6.86 43.30 2.43
3405 7040 7.055667 TCAAGATCAAGACTTGTGTTAGAGT 57.944 36.000 14.75 0.00 43.30 3.24
3406 7041 7.500992 TCAAGATCAAGACTTGTGTTAGAGTT 58.499 34.615 14.75 0.00 43.30 3.01
3407 7042 7.439356 TCAAGATCAAGACTTGTGTTAGAGTTG 59.561 37.037 14.75 8.54 43.30 3.16
3408 7043 6.821388 AGATCAAGACTTGTGTTAGAGTTGT 58.179 36.000 14.75 0.00 0.00 3.32
3409 7044 6.703607 AGATCAAGACTTGTGTTAGAGTTGTG 59.296 38.462 14.75 0.00 0.00 3.33
3410 7045 5.730550 TCAAGACTTGTGTTAGAGTTGTGT 58.269 37.500 14.75 0.00 0.00 3.72
3411 7046 6.170506 TCAAGACTTGTGTTAGAGTTGTGTT 58.829 36.000 14.75 0.00 0.00 3.32
3412 7047 6.092122 TCAAGACTTGTGTTAGAGTTGTGTTG 59.908 38.462 14.75 0.00 0.00 3.33
3413 7048 5.730550 AGACTTGTGTTAGAGTTGTGTTGA 58.269 37.500 0.00 0.00 0.00 3.18
3414 7049 6.170506 AGACTTGTGTTAGAGTTGTGTTGAA 58.829 36.000 0.00 0.00 0.00 2.69
3415 7050 6.823689 AGACTTGTGTTAGAGTTGTGTTGAAT 59.176 34.615 0.00 0.00 0.00 2.57
3416 7051 7.985184 AGACTTGTGTTAGAGTTGTGTTGAATA 59.015 33.333 0.00 0.00 0.00 1.75
3417 7052 8.677148 ACTTGTGTTAGAGTTGTGTTGAATAT 57.323 30.769 0.00 0.00 0.00 1.28
3418 7053 9.120538 ACTTGTGTTAGAGTTGTGTTGAATATT 57.879 29.630 0.00 0.00 0.00 1.28
3427 7062 9.302345 AGAGTTGTGTTGAATATTATGTACGAG 57.698 33.333 0.00 0.00 0.00 4.18
3428 7063 9.297586 GAGTTGTGTTGAATATTATGTACGAGA 57.702 33.333 0.00 0.00 0.00 4.04
3429 7064 9.817809 AGTTGTGTTGAATATTATGTACGAGAT 57.182 29.630 0.00 0.00 0.00 2.75
3432 7067 9.908152 TGTGTTGAATATTATGTACGAGATAGG 57.092 33.333 0.00 0.00 0.00 2.57
3433 7068 9.909644 GTGTTGAATATTATGTACGAGATAGGT 57.090 33.333 0.00 0.00 0.00 3.08
3443 7078 9.797642 TTATGTACGAGATAGGTTATAGTTGGA 57.202 33.333 0.00 0.00 0.00 3.53
3444 7079 7.502120 TGTACGAGATAGGTTATAGTTGGAC 57.498 40.000 0.00 0.00 0.00 4.02
3445 7080 7.285566 TGTACGAGATAGGTTATAGTTGGACT 58.714 38.462 0.00 0.00 0.00 3.85
3446 7081 6.880942 ACGAGATAGGTTATAGTTGGACTC 57.119 41.667 0.00 0.00 0.00 3.36
3447 7082 6.603224 ACGAGATAGGTTATAGTTGGACTCT 58.397 40.000 0.00 0.00 0.00 3.24
3448 7083 6.487331 ACGAGATAGGTTATAGTTGGACTCTG 59.513 42.308 0.00 0.00 0.00 3.35
3449 7084 6.711194 CGAGATAGGTTATAGTTGGACTCTGA 59.289 42.308 0.00 0.00 0.00 3.27
3450 7085 7.094975 CGAGATAGGTTATAGTTGGACTCTGAG 60.095 44.444 2.45 2.45 0.00 3.35
3451 7086 7.588169 AGATAGGTTATAGTTGGACTCTGAGT 58.412 38.462 10.66 10.66 0.00 3.41
3452 7087 8.725256 AGATAGGTTATAGTTGGACTCTGAGTA 58.275 37.037 10.86 0.00 0.00 2.59
3453 7088 8.927675 ATAGGTTATAGTTGGACTCTGAGTAG 57.072 38.462 10.86 0.00 0.00 2.57
3454 7089 6.733509 AGGTTATAGTTGGACTCTGAGTAGT 58.266 40.000 10.86 0.99 0.00 2.73
3455 7090 7.183460 AGGTTATAGTTGGACTCTGAGTAGTT 58.817 38.462 10.86 0.00 0.00 2.24
3456 7091 7.674772 AGGTTATAGTTGGACTCTGAGTAGTTT 59.325 37.037 10.86 0.00 0.00 2.66
3457 7092 8.312564 GGTTATAGTTGGACTCTGAGTAGTTTT 58.687 37.037 10.86 0.00 0.00 2.43
3458 7093 9.708092 GTTATAGTTGGACTCTGAGTAGTTTTT 57.292 33.333 10.86 0.00 0.00 1.94
3462 7097 8.834749 AGTTGGACTCTGAGTAGTTTTTAATC 57.165 34.615 10.86 0.00 0.00 1.75
3463 7098 7.599245 AGTTGGACTCTGAGTAGTTTTTAATCG 59.401 37.037 10.86 0.00 0.00 3.34
3464 7099 6.989659 TGGACTCTGAGTAGTTTTTAATCGT 58.010 36.000 10.86 0.00 0.00 3.73
3465 7100 6.866770 TGGACTCTGAGTAGTTTTTAATCGTG 59.133 38.462 10.86 0.00 0.00 4.35
3466 7101 6.867293 GGACTCTGAGTAGTTTTTAATCGTGT 59.133 38.462 10.86 0.00 0.00 4.49
3467 7102 7.384387 GGACTCTGAGTAGTTTTTAATCGTGTT 59.616 37.037 10.86 0.00 0.00 3.32
3468 7103 8.295569 ACTCTGAGTAGTTTTTAATCGTGTTC 57.704 34.615 8.91 0.00 0.00 3.18
3469 7104 8.142551 ACTCTGAGTAGTTTTTAATCGTGTTCT 58.857 33.333 8.91 0.00 0.00 3.01
3470 7105 9.622004 CTCTGAGTAGTTTTTAATCGTGTTCTA 57.378 33.333 0.00 0.00 0.00 2.10
3471 7106 9.970395 TCTGAGTAGTTTTTAATCGTGTTCTAA 57.030 29.630 0.00 0.00 0.00 2.10
3478 7113 9.715121 AGTTTTTAATCGTGTTCTAATAGGACA 57.285 29.630 0.00 0.00 0.00 4.02
3479 7114 9.750882 GTTTTTAATCGTGTTCTAATAGGACAC 57.249 33.333 19.38 19.38 0.00 3.67
3480 7115 9.715121 TTTTTAATCGTGTTCTAATAGGACACT 57.285 29.630 24.61 12.26 0.00 3.55
3481 7116 9.715121 TTTTAATCGTGTTCTAATAGGACACTT 57.285 29.630 24.61 17.09 0.00 3.16
3482 7117 8.697846 TTAATCGTGTTCTAATAGGACACTTG 57.302 34.615 24.61 13.38 0.00 3.16
3483 7118 5.717078 TCGTGTTCTAATAGGACACTTGT 57.283 39.130 24.61 0.00 0.00 3.16
3484 7119 6.822667 TCGTGTTCTAATAGGACACTTGTA 57.177 37.500 24.61 8.90 0.00 2.41
3485 7120 7.400599 TCGTGTTCTAATAGGACACTTGTAT 57.599 36.000 24.61 0.00 0.00 2.29
3486 7121 7.478322 TCGTGTTCTAATAGGACACTTGTATC 58.522 38.462 24.61 2.45 0.00 2.24
3487 7122 6.696148 CGTGTTCTAATAGGACACTTGTATCC 59.304 42.308 24.61 1.81 34.98 2.59
3495 7130 4.922471 GGACACTTGTATCCTAGTCCTC 57.078 50.000 0.00 0.00 41.67 3.71
3496 7131 4.538738 GGACACTTGTATCCTAGTCCTCT 58.461 47.826 0.00 0.00 41.67 3.69
3497 7132 4.957327 GGACACTTGTATCCTAGTCCTCTT 59.043 45.833 0.00 0.00 41.67 2.85
3498 7133 6.127793 GGACACTTGTATCCTAGTCCTCTTA 58.872 44.000 0.00 0.00 41.67 2.10
3499 7134 6.778559 GGACACTTGTATCCTAGTCCTCTTAT 59.221 42.308 0.00 0.00 41.67 1.73
3500 7135 7.040271 GGACACTTGTATCCTAGTCCTCTTATC 60.040 44.444 0.00 0.00 41.67 1.75
3501 7136 6.487331 ACACTTGTATCCTAGTCCTCTTATCG 59.513 42.308 0.00 0.00 0.00 2.92
3502 7137 6.005198 ACTTGTATCCTAGTCCTCTTATCGG 58.995 44.000 0.00 0.00 0.00 4.18
3503 7138 5.579753 TGTATCCTAGTCCTCTTATCGGT 57.420 43.478 0.00 0.00 0.00 4.69
3518 7153 2.404923 TCGGTCGGAAAATGCCAATA 57.595 45.000 0.00 0.00 0.00 1.90
3575 7213 3.807839 CCACCATGGGGATCCGCA 61.808 66.667 31.30 31.30 42.90 5.69
3592 7230 1.073706 CAGGGGCAGGGTATAGGGT 60.074 63.158 0.00 0.00 0.00 4.34
3628 8062 7.285788 TCGATTTAACGCTAACTTTTTCACTC 58.714 34.615 0.00 0.00 0.00 3.51
3799 8239 3.435275 ACTCTCCTACAGACTCAATGCA 58.565 45.455 0.00 0.00 0.00 3.96
3818 8268 1.136891 CATGTACATCGACAGAGGGCA 59.863 52.381 5.07 0.00 31.51 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.698854 CGTTAATTGTGTGCAAATTTTATCAGT 58.301 29.630 0.43 0.00 38.21 3.41
4 5 7.505646 TGCGTTAATTGTGTGCAAATTTTATC 58.494 30.769 0.43 0.00 38.21 1.75
5 6 7.413475 TGCGTTAATTGTGTGCAAATTTTAT 57.587 28.000 0.43 0.00 38.21 1.40
6 7 6.828502 TGCGTTAATTGTGTGCAAATTTTA 57.171 29.167 0.43 0.00 38.21 1.52
7 8 5.725110 TGCGTTAATTGTGTGCAAATTTT 57.275 30.435 0.43 0.00 38.21 1.82
8 9 5.725110 TTGCGTTAATTGTGTGCAAATTT 57.275 30.435 0.43 0.00 42.04 1.82
9 10 5.725110 TTTGCGTTAATTGTGTGCAAATT 57.275 30.435 14.08 0.00 46.88 1.82
12 13 4.177026 ACTTTTGCGTTAATTGTGTGCAA 58.823 34.783 0.00 5.47 43.16 4.08
13 14 3.775202 ACTTTTGCGTTAATTGTGTGCA 58.225 36.364 0.00 0.00 0.00 4.57
14 15 4.504385 CAACTTTTGCGTTAATTGTGTGC 58.496 39.130 0.00 0.00 0.00 4.57
50 51 8.962884 TGACTATTATATGTGTGTTCTTGCAT 57.037 30.769 0.00 0.00 0.00 3.96
51 52 8.785329 TTGACTATTATATGTGTGTTCTTGCA 57.215 30.769 0.00 0.00 0.00 4.08
52 53 8.883731 ACTTGACTATTATATGTGTGTTCTTGC 58.116 33.333 0.00 0.00 0.00 4.01
56 57 9.901724 CGAAACTTGACTATTATATGTGTGTTC 57.098 33.333 0.00 0.00 0.00 3.18
57 58 8.388103 GCGAAACTTGACTATTATATGTGTGTT 58.612 33.333 0.00 0.00 0.00 3.32
60 61 8.487313 TTGCGAAACTTGACTATTATATGTGT 57.513 30.769 0.00 0.00 0.00 3.72
61 62 9.767684 TTTTGCGAAACTTGACTATTATATGTG 57.232 29.630 0.00 0.00 0.00 3.21
86 87 8.492673 TCATTACTTCGTAGCAATCATCTTTT 57.507 30.769 0.00 0.00 0.00 2.27
87 88 8.492673 TTCATTACTTCGTAGCAATCATCTTT 57.507 30.769 0.00 0.00 0.00 2.52
88 89 8.668510 ATTCATTACTTCGTAGCAATCATCTT 57.331 30.769 0.00 0.00 0.00 2.40
91 92 9.547753 ACTAATTCATTACTTCGTAGCAATCAT 57.452 29.630 0.00 0.00 0.00 2.45
92 93 8.817100 CACTAATTCATTACTTCGTAGCAATCA 58.183 33.333 0.00 0.00 0.00 2.57
94 95 7.254795 GCCACTAATTCATTACTTCGTAGCAAT 60.255 37.037 0.00 0.00 0.00 3.56
95 96 6.036735 GCCACTAATTCATTACTTCGTAGCAA 59.963 38.462 0.00 0.00 0.00 3.91
96 97 5.522460 GCCACTAATTCATTACTTCGTAGCA 59.478 40.000 0.00 0.00 0.00 3.49
97 98 5.522460 TGCCACTAATTCATTACTTCGTAGC 59.478 40.000 0.00 0.00 0.00 3.58
101 102 7.715265 AGTATGCCACTAATTCATTACTTCG 57.285 36.000 0.00 0.00 34.98 3.79
115 116 8.326529 GGGTAATACCAATATTAGTATGCCACT 58.673 37.037 19.45 5.77 41.02 4.00
116 117 8.326529 AGGGTAATACCAATATTAGTATGCCAC 58.673 37.037 19.45 12.95 41.02 5.01
118 119 9.749340 AAAGGGTAATACCAATATTAGTATGCC 57.251 33.333 12.03 11.35 41.02 4.40
191 192 9.807921 ACCACTAATTCATTCTTTCTTAGGAAA 57.192 29.630 0.00 0.00 38.90 3.13
197 198 9.533831 ACCAATACCACTAATTCATTCTTTCTT 57.466 29.630 0.00 0.00 0.00 2.52
226 227 9.594936 TCCCAATTTCTTTCTTCTTAAATGGTA 57.405 29.630 0.00 0.00 0.00 3.25
227 228 8.491045 TCCCAATTTCTTTCTTCTTAAATGGT 57.509 30.769 0.00 0.00 0.00 3.55
228 229 9.777297 TTTCCCAATTTCTTTCTTCTTAAATGG 57.223 29.630 0.00 0.00 0.00 3.16
241 242 9.875691 GCTTTAGATATTGTTTCCCAATTTCTT 57.124 29.630 11.43 0.85 44.48 2.52
242 243 9.034800 TGCTTTAGATATTGTTTCCCAATTTCT 57.965 29.630 11.09 11.09 46.76 2.52
243 244 9.651913 TTGCTTTAGATATTGTTTCCCAATTTC 57.348 29.630 0.00 0.00 41.01 2.17
245 246 9.435688 GTTTGCTTTAGATATTGTTTCCCAATT 57.564 29.630 0.00 0.00 41.01 2.32
246 247 8.592809 TGTTTGCTTTAGATATTGTTTCCCAAT 58.407 29.630 0.00 0.00 45.68 3.16
247 248 7.957002 TGTTTGCTTTAGATATTGTTTCCCAA 58.043 30.769 0.00 0.00 37.49 4.12
249 250 7.542130 CACTGTTTGCTTTAGATATTGTTTCCC 59.458 37.037 0.00 0.00 0.00 3.97
250 251 8.296713 TCACTGTTTGCTTTAGATATTGTTTCC 58.703 33.333 0.00 0.00 0.00 3.13
251 252 9.118236 GTCACTGTTTGCTTTAGATATTGTTTC 57.882 33.333 0.00 0.00 0.00 2.78
252 253 8.850156 AGTCACTGTTTGCTTTAGATATTGTTT 58.150 29.630 0.00 0.00 0.00 2.83
253 254 8.396272 AGTCACTGTTTGCTTTAGATATTGTT 57.604 30.769 0.00 0.00 0.00 2.83
254 255 7.986085 AGTCACTGTTTGCTTTAGATATTGT 57.014 32.000 0.00 0.00 0.00 2.71
259 260 9.683069 CAAATTTAGTCACTGTTTGCTTTAGAT 57.317 29.630 0.00 0.00 0.00 1.98
260 261 7.647715 GCAAATTTAGTCACTGTTTGCTTTAGA 59.352 33.333 20.85 0.00 46.60 2.10
261 262 7.777425 GCAAATTTAGTCACTGTTTGCTTTAG 58.223 34.615 20.85 0.00 46.60 1.85
263 264 6.588348 GCAAATTTAGTCACTGTTTGCTTT 57.412 33.333 20.85 0.00 46.60 3.51
267 268 6.884096 TTGTGCAAATTTAGTCACTGTTTG 57.116 33.333 14.44 7.44 33.98 2.93
268 269 7.897575 TTTTGTGCAAATTTAGTCACTGTTT 57.102 28.000 14.44 0.00 0.00 2.83
269 270 9.593134 TTATTTTGTGCAAATTTAGTCACTGTT 57.407 25.926 14.44 4.73 36.43 3.16
270 271 9.762933 ATTATTTTGTGCAAATTTAGTCACTGT 57.237 25.926 14.44 0.00 36.43 3.55
294 295 9.908152 GCCACTACTTCATTGTTTAACTTAATT 57.092 29.630 0.00 0.00 0.00 1.40
295 296 8.234546 CGCCACTACTTCATTGTTTAACTTAAT 58.765 33.333 0.00 0.00 0.00 1.40
296 297 7.227116 ACGCCACTACTTCATTGTTTAACTTAA 59.773 33.333 0.00 0.00 0.00 1.85
297 298 6.707161 ACGCCACTACTTCATTGTTTAACTTA 59.293 34.615 0.00 0.00 0.00 2.24
298 299 5.529800 ACGCCACTACTTCATTGTTTAACTT 59.470 36.000 0.00 0.00 0.00 2.66
299 300 5.061179 ACGCCACTACTTCATTGTTTAACT 58.939 37.500 0.00 0.00 0.00 2.24
301 302 5.278071 CCAACGCCACTACTTCATTGTTTAA 60.278 40.000 0.00 0.00 0.00 1.52
303 304 3.004315 CCAACGCCACTACTTCATTGTTT 59.996 43.478 0.00 0.00 0.00 2.83
304 305 2.552315 CCAACGCCACTACTTCATTGTT 59.448 45.455 0.00 0.00 0.00 2.83
305 306 2.151202 CCAACGCCACTACTTCATTGT 58.849 47.619 0.00 0.00 0.00 2.71
307 308 2.561478 ACCAACGCCACTACTTCATT 57.439 45.000 0.00 0.00 0.00 2.57
308 309 3.906720 ATACCAACGCCACTACTTCAT 57.093 42.857 0.00 0.00 0.00 2.57
309 310 3.688694 AATACCAACGCCACTACTTCA 57.311 42.857 0.00 0.00 0.00 3.02
311 312 3.340928 GGAAATACCAACGCCACTACTT 58.659 45.455 0.00 0.00 38.79 2.24
312 313 2.355412 GGGAAATACCAACGCCACTACT 60.355 50.000 0.00 0.00 41.20 2.57
314 315 1.910671 AGGGAAATACCAACGCCACTA 59.089 47.619 0.00 0.00 41.20 2.74
315 316 0.696501 AGGGAAATACCAACGCCACT 59.303 50.000 0.00 0.00 41.20 4.00
317 318 3.009253 TCTTTAGGGAAATACCAACGCCA 59.991 43.478 0.00 0.00 41.20 5.69
318 319 3.613030 TCTTTAGGGAAATACCAACGCC 58.387 45.455 0.00 0.00 41.20 5.68
361 362 3.490526 ACAAAAGTGTGCAATTTCGATGC 59.509 39.130 2.50 2.50 44.08 3.91
362 363 5.914635 ACTACAAAAGTGTGCAATTTCGATG 59.085 36.000 0.00 0.00 38.82 3.84
363 364 6.072112 ACTACAAAAGTGTGCAATTTCGAT 57.928 33.333 0.00 0.00 38.82 3.59
364 365 5.493133 ACTACAAAAGTGTGCAATTTCGA 57.507 34.783 0.00 0.00 38.82 3.71
365 366 7.252070 CATACTACAAAAGTGTGCAATTTCG 57.748 36.000 0.00 0.00 39.99 3.46
373 374 7.192913 TGTTCTTTGCATACTACAAAAGTGTG 58.807 34.615 0.00 0.00 46.92 3.82
374 375 7.328277 TGTTCTTTGCATACTACAAAAGTGT 57.672 32.000 0.00 0.00 39.39 3.55
375 376 8.801715 ATTGTTCTTTGCATACTACAAAAGTG 57.198 30.769 8.42 0.00 39.39 3.16
376 377 8.629158 TGATTGTTCTTTGCATACTACAAAAGT 58.371 29.630 8.42 0.00 42.62 2.66
377 378 9.630098 ATGATTGTTCTTTGCATACTACAAAAG 57.370 29.630 8.42 0.00 36.63 2.27
447 448 9.680315 GGATGTTTAGCGAGGATACATATATAC 57.320 37.037 0.00 0.00 41.41 1.47
448 449 8.857098 GGGATGTTTAGCGAGGATACATATATA 58.143 37.037 0.00 0.00 41.41 0.86
449 450 7.344612 TGGGATGTTTAGCGAGGATACATATAT 59.655 37.037 0.00 0.00 41.41 0.86
450 451 6.666113 TGGGATGTTTAGCGAGGATACATATA 59.334 38.462 0.00 0.00 41.41 0.86
451 452 5.483937 TGGGATGTTTAGCGAGGATACATAT 59.516 40.000 0.00 0.00 41.41 1.78
453 454 3.646162 TGGGATGTTTAGCGAGGATACAT 59.354 43.478 0.00 0.00 41.41 2.29
454 455 3.035363 TGGGATGTTTAGCGAGGATACA 58.965 45.455 0.00 0.00 41.41 2.29
457 458 2.398588 TCTGGGATGTTTAGCGAGGAT 58.601 47.619 0.00 0.00 0.00 3.24
458 459 1.860641 TCTGGGATGTTTAGCGAGGA 58.139 50.000 0.00 0.00 0.00 3.71
459 460 2.691409 TTCTGGGATGTTTAGCGAGG 57.309 50.000 0.00 0.00 0.00 4.63
460 461 4.511826 GGTATTTCTGGGATGTTTAGCGAG 59.488 45.833 0.00 0.00 0.00 5.03
463 464 4.338400 GTGGGTATTTCTGGGATGTTTAGC 59.662 45.833 0.00 0.00 0.00 3.09
464 465 4.887655 GGTGGGTATTTCTGGGATGTTTAG 59.112 45.833 0.00 0.00 0.00 1.85
465 466 4.292571 TGGTGGGTATTTCTGGGATGTTTA 59.707 41.667 0.00 0.00 0.00 2.01
466 467 3.076785 TGGTGGGTATTTCTGGGATGTTT 59.923 43.478 0.00 0.00 0.00 2.83
467 468 2.652348 TGGTGGGTATTTCTGGGATGTT 59.348 45.455 0.00 0.00 0.00 2.71
469 470 2.654863 GTGGTGGGTATTTCTGGGATG 58.345 52.381 0.00 0.00 0.00 3.51
470 471 1.569072 GGTGGTGGGTATTTCTGGGAT 59.431 52.381 0.00 0.00 0.00 3.85
471 472 0.996583 GGTGGTGGGTATTTCTGGGA 59.003 55.000 0.00 0.00 0.00 4.37
473 474 2.595750 TTGGTGGTGGGTATTTCTGG 57.404 50.000 0.00 0.00 0.00 3.86
474 475 6.154363 ACATTAATTGGTGGTGGGTATTTCTG 59.846 38.462 0.00 0.00 0.00 3.02
475 476 6.260663 ACATTAATTGGTGGTGGGTATTTCT 58.739 36.000 0.00 0.00 0.00 2.52
476 477 6.538945 ACATTAATTGGTGGTGGGTATTTC 57.461 37.500 0.00 0.00 0.00 2.17
477 478 7.415086 TCTACATTAATTGGTGGTGGGTATTT 58.585 34.615 0.00 0.00 0.00 1.40
478 479 6.975949 TCTACATTAATTGGTGGTGGGTATT 58.024 36.000 0.00 0.00 0.00 1.89
481 482 4.538490 TCTCTACATTAATTGGTGGTGGGT 59.462 41.667 0.00 0.00 0.00 4.51
482 483 4.881850 GTCTCTACATTAATTGGTGGTGGG 59.118 45.833 0.00 0.00 0.00 4.61
483 484 4.570772 CGTCTCTACATTAATTGGTGGTGG 59.429 45.833 0.00 0.00 0.00 4.61
484 485 5.416083 TCGTCTCTACATTAATTGGTGGTG 58.584 41.667 0.00 0.00 0.00 4.17
485 486 5.670792 TCGTCTCTACATTAATTGGTGGT 57.329 39.130 0.00 0.00 0.00 4.16
486 487 6.338146 TCTTCGTCTCTACATTAATTGGTGG 58.662 40.000 0.00 0.00 0.00 4.61
487 488 7.827819 TTCTTCGTCTCTACATTAATTGGTG 57.172 36.000 0.00 0.00 0.00 4.17
488 489 8.842358 TTTTCTTCGTCTCTACATTAATTGGT 57.158 30.769 0.00 0.00 0.00 3.67
489 490 9.151471 TCTTTTCTTCGTCTCTACATTAATTGG 57.849 33.333 0.00 0.00 0.00 3.16
495 496 9.884465 CATTTTTCTTTTCTTCGTCTCTACATT 57.116 29.630 0.00 0.00 0.00 2.71
496 497 8.017946 GCATTTTTCTTTTCTTCGTCTCTACAT 58.982 33.333 0.00 0.00 0.00 2.29
497 498 7.011950 TGCATTTTTCTTTTCTTCGTCTCTACA 59.988 33.333 0.00 0.00 0.00 2.74
499 500 7.490962 TGCATTTTTCTTTTCTTCGTCTCTA 57.509 32.000 0.00 0.00 0.00 2.43
500 501 6.377327 TGCATTTTTCTTTTCTTCGTCTCT 57.623 33.333 0.00 0.00 0.00 3.10
501 502 8.728088 TTATGCATTTTTCTTTTCTTCGTCTC 57.272 30.769 3.54 0.00 0.00 3.36
502 503 9.528018 TTTTATGCATTTTTCTTTTCTTCGTCT 57.472 25.926 3.54 0.00 0.00 4.18
526 527 9.665719 TCCTTTGCTTTTTCTGTTTTCTATTTT 57.334 25.926 0.00 0.00 0.00 1.82
527 528 9.317936 CTCCTTTGCTTTTTCTGTTTTCTATTT 57.682 29.630 0.00 0.00 0.00 1.40
528 529 8.695456 TCTCCTTTGCTTTTTCTGTTTTCTATT 58.305 29.630 0.00 0.00 0.00 1.73
529 530 8.237811 TCTCCTTTGCTTTTTCTGTTTTCTAT 57.762 30.769 0.00 0.00 0.00 1.98
530 531 7.639113 TCTCCTTTGCTTTTTCTGTTTTCTA 57.361 32.000 0.00 0.00 0.00 2.10
532 533 7.545615 TCTTTCTCCTTTGCTTTTTCTGTTTTC 59.454 33.333 0.00 0.00 0.00 2.29
533 534 7.386059 TCTTTCTCCTTTGCTTTTTCTGTTTT 58.614 30.769 0.00 0.00 0.00 2.43
534 535 6.935167 TCTTTCTCCTTTGCTTTTTCTGTTT 58.065 32.000 0.00 0.00 0.00 2.83
535 536 6.530019 TCTTTCTCCTTTGCTTTTTCTGTT 57.470 33.333 0.00 0.00 0.00 3.16
537 538 6.799512 TCTTCTTTCTCCTTTGCTTTTTCTG 58.200 36.000 0.00 0.00 0.00 3.02
538 539 6.040278 CCTCTTCTTTCTCCTTTGCTTTTTCT 59.960 38.462 0.00 0.00 0.00 2.52
539 540 6.039829 TCCTCTTCTTTCTCCTTTGCTTTTTC 59.960 38.462 0.00 0.00 0.00 2.29
540 541 5.893824 TCCTCTTCTTTCTCCTTTGCTTTTT 59.106 36.000 0.00 0.00 0.00 1.94
541 542 5.449553 TCCTCTTCTTTCTCCTTTGCTTTT 58.550 37.500 0.00 0.00 0.00 2.27
542 543 5.053978 TCCTCTTCTTTCTCCTTTGCTTT 57.946 39.130 0.00 0.00 0.00 3.51
543 544 4.713792 TCCTCTTCTTTCTCCTTTGCTT 57.286 40.909 0.00 0.00 0.00 3.91
544 545 4.713792 TTCCTCTTCTTTCTCCTTTGCT 57.286 40.909 0.00 0.00 0.00 3.91
545 546 4.157472 CCATTCCTCTTCTTTCTCCTTTGC 59.843 45.833 0.00 0.00 0.00 3.68
547 548 4.812442 GCCCATTCCTCTTCTTTCTCCTTT 60.812 45.833 0.00 0.00 0.00 3.11
548 549 3.308760 GCCCATTCCTCTTCTTTCTCCTT 60.309 47.826 0.00 0.00 0.00 3.36
549 550 2.240921 GCCCATTCCTCTTCTTTCTCCT 59.759 50.000 0.00 0.00 0.00 3.69
550 551 2.240921 AGCCCATTCCTCTTCTTTCTCC 59.759 50.000 0.00 0.00 0.00 3.71
552 553 3.620966 CGAAGCCCATTCCTCTTCTTTCT 60.621 47.826 0.00 0.00 35.35 2.52
553 554 2.680339 CGAAGCCCATTCCTCTTCTTTC 59.320 50.000 0.00 0.00 35.35 2.62
556 557 0.543749 CCGAAGCCCATTCCTCTTCT 59.456 55.000 0.00 0.00 35.35 2.85
557 558 1.098129 GCCGAAGCCCATTCCTCTTC 61.098 60.000 0.00 0.00 34.10 2.87
558 559 1.077429 GCCGAAGCCCATTCCTCTT 60.077 57.895 0.00 0.00 34.10 2.85
559 560 2.592308 GCCGAAGCCCATTCCTCT 59.408 61.111 0.00 0.00 34.10 3.69
569 570 1.739067 ACTCATTAACAGGCCGAAGC 58.261 50.000 0.00 0.00 38.76 3.86
570 571 3.600388 AGAACTCATTAACAGGCCGAAG 58.400 45.455 0.00 0.00 0.00 3.79
571 572 3.695830 AGAACTCATTAACAGGCCGAA 57.304 42.857 0.00 0.00 0.00 4.30
572 573 3.430374 GCTAGAACTCATTAACAGGCCGA 60.430 47.826 0.00 0.00 0.00 5.54
573 574 2.866762 GCTAGAACTCATTAACAGGCCG 59.133 50.000 0.00 0.00 0.00 6.13
574 575 3.873910 TGCTAGAACTCATTAACAGGCC 58.126 45.455 0.00 0.00 0.00 5.19
575 576 5.880054 TTTGCTAGAACTCATTAACAGGC 57.120 39.130 0.00 0.00 0.00 4.85
576 577 7.440523 AGTTTTGCTAGAACTCATTAACAGG 57.559 36.000 0.00 0.00 32.04 4.00
578 579 9.332502 TGTTAGTTTTGCTAGAACTCATTAACA 57.667 29.630 0.00 0.00 38.28 2.41
606 607 6.708949 TCTGCTTTAAGATCCGTGTACTTTTT 59.291 34.615 0.00 0.00 0.00 1.94
607 608 6.228258 TCTGCTTTAAGATCCGTGTACTTTT 58.772 36.000 0.00 0.00 0.00 2.27
608 609 5.790593 TCTGCTTTAAGATCCGTGTACTTT 58.209 37.500 0.00 0.00 0.00 2.66
609 610 5.401531 TCTGCTTTAAGATCCGTGTACTT 57.598 39.130 0.00 0.00 0.00 2.24
610 611 5.401531 TTCTGCTTTAAGATCCGTGTACT 57.598 39.130 0.00 0.00 0.00 2.73
612 613 6.403049 TGATTTCTGCTTTAAGATCCGTGTA 58.597 36.000 0.00 0.00 0.00 2.90
613 614 5.245531 TGATTTCTGCTTTAAGATCCGTGT 58.754 37.500 0.00 0.00 0.00 4.49
615 616 6.599244 TCATTGATTTCTGCTTTAAGATCCGT 59.401 34.615 0.00 0.00 0.00 4.69
616 617 6.909357 GTCATTGATTTCTGCTTTAAGATCCG 59.091 38.462 0.00 0.00 0.00 4.18
617 618 7.199078 GGTCATTGATTTCTGCTTTAAGATCC 58.801 38.462 0.00 0.00 0.00 3.36
619 620 6.599244 TCGGTCATTGATTTCTGCTTTAAGAT 59.401 34.615 0.00 0.00 0.00 2.40
621 622 6.182039 TCGGTCATTGATTTCTGCTTTAAG 57.818 37.500 0.00 0.00 0.00 1.85
623 624 6.567687 TTTCGGTCATTGATTTCTGCTTTA 57.432 33.333 0.00 0.00 0.00 1.85
624 625 5.452078 TTTCGGTCATTGATTTCTGCTTT 57.548 34.783 0.00 0.00 0.00 3.51
625 626 5.452078 TTTTCGGTCATTGATTTCTGCTT 57.548 34.783 0.00 0.00 0.00 3.91
647 648 8.750515 AATTTGGTTTGGATCTGTTGATTTTT 57.249 26.923 0.00 0.00 32.19 1.94
648 649 8.750515 AAATTTGGTTTGGATCTGTTGATTTT 57.249 26.923 0.00 0.00 32.19 1.82
649 650 8.750515 AAAATTTGGTTTGGATCTGTTGATTT 57.249 26.923 0.00 0.00 32.19 2.17
650 651 7.992033 TGAAAATTTGGTTTGGATCTGTTGATT 59.008 29.630 0.00 0.00 32.19 2.57
651 652 7.507829 TGAAAATTTGGTTTGGATCTGTTGAT 58.492 30.769 0.00 0.00 35.26 2.57
654 655 6.986231 GTCTGAAAATTTGGTTTGGATCTGTT 59.014 34.615 0.00 0.00 0.00 3.16
655 656 6.515832 GTCTGAAAATTTGGTTTGGATCTGT 58.484 36.000 0.00 0.00 0.00 3.41
656 657 5.630680 CGTCTGAAAATTTGGTTTGGATCTG 59.369 40.000 0.00 0.00 0.00 2.90
657 658 5.534654 TCGTCTGAAAATTTGGTTTGGATCT 59.465 36.000 0.00 0.00 0.00 2.75
658 659 5.768317 TCGTCTGAAAATTTGGTTTGGATC 58.232 37.500 0.00 0.00 0.00 3.36
659 660 5.782893 TCGTCTGAAAATTTGGTTTGGAT 57.217 34.783 0.00 0.00 0.00 3.41
660 661 5.782893 ATCGTCTGAAAATTTGGTTTGGA 57.217 34.783 0.00 0.00 0.00 3.53
662 663 8.346476 TGTAAATCGTCTGAAAATTTGGTTTG 57.654 30.769 0.00 0.00 0.00 2.93
704 705 8.085909 CGTCCCAAAATAATTGAAAGTTTAGGT 58.914 33.333 0.00 0.00 0.00 3.08
707 708 8.179509 TCCGTCCCAAAATAATTGAAAGTTTA 57.820 30.769 0.00 0.00 0.00 2.01
708 709 7.056844 TCCGTCCCAAAATAATTGAAAGTTT 57.943 32.000 0.00 0.00 0.00 2.66
709 710 6.295067 CCTCCGTCCCAAAATAATTGAAAGTT 60.295 38.462 0.00 0.00 0.00 2.66
710 711 5.185056 CCTCCGTCCCAAAATAATTGAAAGT 59.815 40.000 0.00 0.00 0.00 2.66
711 712 5.417580 TCCTCCGTCCCAAAATAATTGAAAG 59.582 40.000 0.00 0.00 0.00 2.62
712 713 5.326069 TCCTCCGTCCCAAAATAATTGAAA 58.674 37.500 0.00 0.00 0.00 2.69
713 714 4.924625 TCCTCCGTCCCAAAATAATTGAA 58.075 39.130 0.00 0.00 0.00 2.69
714 715 4.577988 TCCTCCGTCCCAAAATAATTGA 57.422 40.909 0.00 0.00 0.00 2.57
715 716 5.852282 ATTCCTCCGTCCCAAAATAATTG 57.148 39.130 0.00 0.00 0.00 2.32
716 717 5.529800 CGTATTCCTCCGTCCCAAAATAATT 59.470 40.000 0.00 0.00 0.00 1.40
717 718 5.061179 CGTATTCCTCCGTCCCAAAATAAT 58.939 41.667 0.00 0.00 0.00 1.28
718 719 4.161942 TCGTATTCCTCCGTCCCAAAATAA 59.838 41.667 0.00 0.00 0.00 1.40
719 720 3.705579 TCGTATTCCTCCGTCCCAAAATA 59.294 43.478 0.00 0.00 0.00 1.40
720 721 2.502538 TCGTATTCCTCCGTCCCAAAAT 59.497 45.455 0.00 0.00 0.00 1.82
722 723 1.559368 TCGTATTCCTCCGTCCCAAA 58.441 50.000 0.00 0.00 0.00 3.28
723 724 1.479323 CTTCGTATTCCTCCGTCCCAA 59.521 52.381 0.00 0.00 0.00 4.12
724 725 1.108776 CTTCGTATTCCTCCGTCCCA 58.891 55.000 0.00 0.00 0.00 4.37
726 727 1.337387 CTCCTTCGTATTCCTCCGTCC 59.663 57.143 0.00 0.00 0.00 4.79
728 729 0.745468 GCTCCTTCGTATTCCTCCGT 59.255 55.000 0.00 0.00 0.00 4.69
729 730 0.744874 TGCTCCTTCGTATTCCTCCG 59.255 55.000 0.00 0.00 0.00 4.63
730 731 1.202545 GGTGCTCCTTCGTATTCCTCC 60.203 57.143 0.00 0.00 0.00 4.30
732 733 0.831307 GGGTGCTCCTTCGTATTCCT 59.169 55.000 4.53 0.00 0.00 3.36
733 734 0.529992 CGGGTGCTCCTTCGTATTCC 60.530 60.000 4.53 0.00 0.00 3.01
734 735 0.175073 ACGGGTGCTCCTTCGTATTC 59.825 55.000 7.24 0.00 31.78 1.75
736 737 0.611714 AAACGGGTGCTCCTTCGTAT 59.388 50.000 9.09 0.00 32.87 3.06
737 738 0.320073 CAAACGGGTGCTCCTTCGTA 60.320 55.000 9.09 0.00 32.87 3.43
738 739 1.597027 CAAACGGGTGCTCCTTCGT 60.597 57.895 4.53 4.05 34.17 3.85
740 741 0.034896 TCTCAAACGGGTGCTCCTTC 59.965 55.000 4.53 0.00 0.00 3.46
742 743 1.122019 ACTCTCAAACGGGTGCTCCT 61.122 55.000 4.53 0.00 0.00 3.69
745 746 1.371558 GGACTCTCAAACGGGTGCT 59.628 57.895 0.00 0.00 0.00 4.40
746 747 0.321653 ATGGACTCTCAAACGGGTGC 60.322 55.000 0.00 0.00 0.00 5.01
748 749 1.276421 CTCATGGACTCTCAAACGGGT 59.724 52.381 0.00 0.00 0.00 5.28
749 750 1.406069 CCTCATGGACTCTCAAACGGG 60.406 57.143 0.00 0.00 34.57 5.28
751 752 1.066573 AGCCTCATGGACTCTCAAACG 60.067 52.381 0.00 0.00 34.57 3.60
752 753 2.027745 TGAGCCTCATGGACTCTCAAAC 60.028 50.000 0.00 0.00 37.38 2.93
753 754 2.259917 TGAGCCTCATGGACTCTCAAA 58.740 47.619 0.00 0.00 37.38 2.69
754 755 1.942776 TGAGCCTCATGGACTCTCAA 58.057 50.000 0.00 0.00 37.38 3.02
755 756 2.171568 ATGAGCCTCATGGACTCTCA 57.828 50.000 6.37 9.86 35.43 3.27
764 765 1.408340 CGAGAGTGTCATGAGCCTCAT 59.592 52.381 18.85 0.08 37.65 2.90
765 766 0.813821 CGAGAGTGTCATGAGCCTCA 59.186 55.000 18.85 0.00 0.00 3.86
766 767 1.098869 TCGAGAGTGTCATGAGCCTC 58.901 55.000 11.84 11.84 0.00 4.70
767 768 1.680735 GATCGAGAGTGTCATGAGCCT 59.319 52.381 0.00 0.00 0.00 4.58
769 770 2.098934 ACTGATCGAGAGTGTCATGAGC 59.901 50.000 0.00 0.00 0.00 4.26
770 771 4.368874 AACTGATCGAGAGTGTCATGAG 57.631 45.455 0.00 0.00 0.00 2.90
771 772 4.021981 ACAAACTGATCGAGAGTGTCATGA 60.022 41.667 0.00 0.00 0.00 3.07
772 773 4.240888 ACAAACTGATCGAGAGTGTCATG 58.759 43.478 0.84 0.00 0.00 3.07
773 774 4.219507 AGACAAACTGATCGAGAGTGTCAT 59.780 41.667 20.52 11.77 39.50 3.06
774 775 3.570125 AGACAAACTGATCGAGAGTGTCA 59.430 43.478 20.52 3.92 39.50 3.58
775 776 4.167554 AGACAAACTGATCGAGAGTGTC 57.832 45.455 15.95 15.95 38.36 3.67
776 777 4.592485 AAGACAAACTGATCGAGAGTGT 57.408 40.909 0.84 0.00 0.00 3.55
777 778 4.376819 GCAAAGACAAACTGATCGAGAGTG 60.377 45.833 0.84 0.00 0.00 3.51
778 779 3.743396 GCAAAGACAAACTGATCGAGAGT 59.257 43.478 0.00 0.00 0.00 3.24
779 780 3.742882 TGCAAAGACAAACTGATCGAGAG 59.257 43.478 0.00 0.00 0.00 3.20
780 781 3.727726 TGCAAAGACAAACTGATCGAGA 58.272 40.909 0.00 0.00 0.00 4.04
782 783 3.365264 GCATGCAAAGACAAACTGATCGA 60.365 43.478 14.21 0.00 0.00 3.59
783 784 2.912967 GCATGCAAAGACAAACTGATCG 59.087 45.455 14.21 0.00 0.00 3.69
785 786 2.352030 CGGCATGCAAAGACAAACTGAT 60.352 45.455 21.36 0.00 0.00 2.90
786 787 1.001487 CGGCATGCAAAGACAAACTGA 60.001 47.619 21.36 0.00 0.00 3.41
854 862 1.177401 TGTGTCCGAGGATGACAGAG 58.823 55.000 0.00 0.00 42.99 3.35
861 869 2.293677 GACGATACATGTGTCCGAGGAT 59.706 50.000 16.00 0.00 0.00 3.24
868 876 2.464865 GAGGCAGACGATACATGTGTC 58.535 52.381 12.27 12.27 0.00 3.67
870 878 1.539065 GGGAGGCAGACGATACATGTG 60.539 57.143 9.11 0.00 0.00 3.21
877 885 2.364842 AGCAGGGAGGCAGACGAT 60.365 61.111 0.00 0.00 35.83 3.73
881 889 1.845627 CTTTGGAGCAGGGAGGCAGA 61.846 60.000 0.00 0.00 35.83 4.26
882 890 1.378250 CTTTGGAGCAGGGAGGCAG 60.378 63.158 0.00 0.00 35.83 4.85
883 891 2.759114 CTTTGGAGCAGGGAGGCA 59.241 61.111 0.00 0.00 35.83 4.75
932 4471 2.750166 GGCTCCTTTTCTTGTTCTAGCC 59.250 50.000 0.00 0.00 41.27 3.93
947 4486 1.123928 ATAAACGCTAGCTGGCTCCT 58.876 50.000 20.56 6.22 0.00 3.69
989 4533 6.071784 TGTCTAATTACTTCTGCTACGTCCAA 60.072 38.462 0.00 0.00 0.00 3.53
997 4549 5.957771 TCCCATGTCTAATTACTTCTGCT 57.042 39.130 0.00 0.00 0.00 4.24
998 4550 5.008118 GCTTCCCATGTCTAATTACTTCTGC 59.992 44.000 0.00 0.00 0.00 4.26
1044 4600 1.557371 GAGAAGGAAGGTGAGAAGGGG 59.443 57.143 0.00 0.00 0.00 4.79
1061 4617 1.596934 GGTGACAATGGCGAGGAGA 59.403 57.895 0.00 0.00 0.00 3.71
1256 4827 2.411504 GGAGACGGCTTCGAGCTCT 61.412 63.158 12.85 3.46 41.99 4.09
1275 4846 2.265182 CGACAAACCCGGGCATTGT 61.265 57.895 33.74 33.74 39.82 2.71
1277 4848 3.370231 GCGACAAACCCGGGCATT 61.370 61.111 24.08 14.12 0.00 3.56
1851 5451 3.242518 CGACGCTGTCATTGTAGAAAGA 58.757 45.455 8.91 0.00 32.09 2.52
1883 5483 1.448540 CTTCTCCACTGCGGCGAAT 60.449 57.895 12.98 0.00 37.84 3.34
2018 5618 1.374252 GTCGCCGATGGTCACTTGT 60.374 57.895 0.00 0.00 0.00 3.16
2019 5619 1.354337 CTGTCGCCGATGGTCACTTG 61.354 60.000 0.00 0.00 0.00 3.16
2122 5731 1.816863 GCCACAGAACTGGACGGAGA 61.817 60.000 6.76 0.00 32.30 3.71
2128 5737 0.895100 GCCATTGCCACAGAACTGGA 60.895 55.000 6.76 0.00 32.30 3.86
2255 5867 4.349342 TGGTAAAATTGGTTGCCCAGAATT 59.651 37.500 0.00 0.00 43.15 2.17
2270 5882 3.054655 ACGTGATGTAGGCCTGGTAAAAT 60.055 43.478 17.99 0.00 0.00 1.82
2275 5887 1.614241 GGACGTGATGTAGGCCTGGT 61.614 60.000 17.99 0.00 0.00 4.00
2329 5941 0.106335 CTCCACTCCAGCAGCATAGG 59.894 60.000 0.00 0.00 0.00 2.57
2381 5993 5.182760 GCCTCTAAAGGAGATATTTGCCATG 59.817 44.000 0.00 0.00 46.67 3.66
2432 6044 3.517500 GGGAAGAGAAGAAGGTGATGACT 59.482 47.826 0.00 0.00 0.00 3.41
2564 6185 0.539986 GGATGTTGAAGGTCGGCCTA 59.460 55.000 10.18 0.00 46.33 3.93
2594 6215 4.094646 TGCGGCGTGGACATGGAT 62.095 61.111 9.37 0.00 0.00 3.41
2681 6302 1.883084 GTCGGCGGTGGTCATGATC 60.883 63.158 7.21 0.00 0.00 2.92
2789 6410 3.006728 CCAGGGTCCACGGCCTTA 61.007 66.667 0.00 0.00 0.00 2.69
2864 6485 1.996798 TCACCGAGACCTCTTCACTT 58.003 50.000 0.00 0.00 0.00 3.16
2867 6488 1.095600 CGATCACCGAGACCTCTTCA 58.904 55.000 0.00 0.00 41.76 3.02
2912 6533 0.977627 AGTCTGGGATCGCCATGTCA 60.978 55.000 7.38 0.00 35.15 3.58
3036 6657 3.019564 CGGGGTAGTATATTACCTCCGG 58.980 54.545 27.97 17.99 44.70 5.14
3092 6713 1.235281 GCTCGGGTGGGAAAACAGTC 61.235 60.000 0.00 0.00 0.00 3.51
3105 6726 1.738099 CGGTGAACAGAAGCTCGGG 60.738 63.158 0.00 0.00 0.00 5.14
3106 6727 0.734253 CTCGGTGAACAGAAGCTCGG 60.734 60.000 0.00 0.00 0.00 4.63
3126 6747 0.036306 AATCTTCGGGCTTGGTTCGT 59.964 50.000 0.00 0.00 0.00 3.85
3139 6760 4.025647 CCTCCACGCTTATTTCGAATCTTC 60.026 45.833 0.00 0.00 0.00 2.87
3142 6763 2.032808 GCCTCCACGCTTATTTCGAATC 60.033 50.000 0.00 0.00 0.00 2.52
3154 6775 2.357034 TGTTCTTCGCCTCCACGC 60.357 61.111 0.00 0.00 0.00 5.34
3185 6809 2.184322 CGTATCGCACCCTGCACT 59.816 61.111 0.00 0.00 45.36 4.40
3223 6847 0.261696 TGAGATGGGGATCCTCACGA 59.738 55.000 19.06 0.00 32.57 4.35
3255 6879 1.067071 GGCGGTAAAGCTCTAGTGTGT 60.067 52.381 0.00 0.00 37.29 3.72
3274 6898 2.433664 GCAACGTACCTGTCGGGG 60.434 66.667 1.89 0.00 40.03 5.73
3276 6900 2.654877 AGGCAACGTACCTGTCGG 59.345 61.111 9.17 0.00 46.39 4.79
3283 6907 1.641577 GAGATGGTCAGGCAACGTAC 58.358 55.000 0.00 0.00 46.39 3.67
3294 6918 1.986378 CTTGTCGTTGTCGAGATGGTC 59.014 52.381 0.00 0.00 46.96 4.02
3306 6940 0.468226 TCCAGCTCCAACTTGTCGTT 59.532 50.000 0.00 0.00 35.88 3.85
3307 6941 0.468226 TTCCAGCTCCAACTTGTCGT 59.532 50.000 0.00 0.00 0.00 4.34
3313 6947 6.127619 GCTACATTTTTATTCCAGCTCCAACT 60.128 38.462 0.00 0.00 0.00 3.16
3316 6950 4.644685 GGCTACATTTTTATTCCAGCTCCA 59.355 41.667 0.00 0.00 0.00 3.86
3345 6980 3.119137 GCTTTGACACTTCAACCCAAACT 60.119 43.478 0.00 0.00 41.64 2.66
3351 6986 2.612212 TCTTCGCTTTGACACTTCAACC 59.388 45.455 0.00 0.00 41.64 3.77
3352 6987 3.309954 ACTCTTCGCTTTGACACTTCAAC 59.690 43.478 0.00 0.00 41.64 3.18
3372 7007 8.997323 CACAAGTCTTGATCTTGAAGATTTACT 58.003 33.333 19.53 7.75 43.17 2.24
3383 7018 7.225538 CACAACTCTAACACAAGTCTTGATCTT 59.774 37.037 19.53 8.95 0.00 2.40
3384 7019 6.703607 CACAACTCTAACACAAGTCTTGATCT 59.296 38.462 19.53 5.15 0.00 2.75
3385 7020 6.480320 ACACAACTCTAACACAAGTCTTGATC 59.520 38.462 19.53 0.00 0.00 2.92
3386 7021 6.349300 ACACAACTCTAACACAAGTCTTGAT 58.651 36.000 19.53 7.43 0.00 2.57
3387 7022 5.730550 ACACAACTCTAACACAAGTCTTGA 58.269 37.500 19.53 0.00 0.00 3.02
3388 7023 6.092122 TCAACACAACTCTAACACAAGTCTTG 59.908 38.462 11.17 11.17 0.00 3.02
3389 7024 6.170506 TCAACACAACTCTAACACAAGTCTT 58.829 36.000 0.00 0.00 0.00 3.01
3390 7025 5.730550 TCAACACAACTCTAACACAAGTCT 58.269 37.500 0.00 0.00 0.00 3.24
3391 7026 6.417191 TTCAACACAACTCTAACACAAGTC 57.583 37.500 0.00 0.00 0.00 3.01
3392 7027 8.677148 ATATTCAACACAACTCTAACACAAGT 57.323 30.769 0.00 0.00 0.00 3.16
3401 7036 9.302345 CTCGTACATAATATTCAACACAACTCT 57.698 33.333 0.00 0.00 0.00 3.24
3402 7037 9.297586 TCTCGTACATAATATTCAACACAACTC 57.702 33.333 0.00 0.00 0.00 3.01
3403 7038 9.817809 ATCTCGTACATAATATTCAACACAACT 57.182 29.630 0.00 0.00 0.00 3.16
3406 7041 9.908152 CCTATCTCGTACATAATATTCAACACA 57.092 33.333 0.00 0.00 0.00 3.72
3407 7042 9.909644 ACCTATCTCGTACATAATATTCAACAC 57.090 33.333 0.00 0.00 0.00 3.32
3417 7052 9.797642 TCCAACTATAACCTATCTCGTACATAA 57.202 33.333 0.00 0.00 0.00 1.90
3418 7053 9.224267 GTCCAACTATAACCTATCTCGTACATA 57.776 37.037 0.00 0.00 0.00 2.29
3419 7054 7.943447 AGTCCAACTATAACCTATCTCGTACAT 59.057 37.037 0.00 0.00 0.00 2.29
3420 7055 7.285566 AGTCCAACTATAACCTATCTCGTACA 58.714 38.462 0.00 0.00 0.00 2.90
3421 7056 7.661027 AGAGTCCAACTATAACCTATCTCGTAC 59.339 40.741 0.00 0.00 0.00 3.67
3422 7057 7.660617 CAGAGTCCAACTATAACCTATCTCGTA 59.339 40.741 0.00 0.00 0.00 3.43
3423 7058 6.487331 CAGAGTCCAACTATAACCTATCTCGT 59.513 42.308 0.00 0.00 0.00 4.18
3424 7059 6.711194 TCAGAGTCCAACTATAACCTATCTCG 59.289 42.308 0.00 0.00 0.00 4.04
3425 7060 7.722285 ACTCAGAGTCCAACTATAACCTATCTC 59.278 40.741 0.00 0.00 0.00 2.75
3426 7061 7.588169 ACTCAGAGTCCAACTATAACCTATCT 58.412 38.462 0.00 0.00 0.00 1.98
3427 7062 7.826918 ACTCAGAGTCCAACTATAACCTATC 57.173 40.000 0.00 0.00 0.00 2.08
3428 7063 8.504409 ACTACTCAGAGTCCAACTATAACCTAT 58.496 37.037 6.27 0.00 0.00 2.57
3429 7064 7.870027 ACTACTCAGAGTCCAACTATAACCTA 58.130 38.462 6.27 0.00 0.00 3.08
3430 7065 6.733509 ACTACTCAGAGTCCAACTATAACCT 58.266 40.000 6.27 0.00 0.00 3.50
3431 7066 7.407393 AACTACTCAGAGTCCAACTATAACC 57.593 40.000 6.27 0.00 0.00 2.85
3432 7067 9.708092 AAAAACTACTCAGAGTCCAACTATAAC 57.292 33.333 6.27 0.00 0.00 1.89
3436 7071 9.924650 GATTAAAAACTACTCAGAGTCCAACTA 57.075 33.333 6.27 0.00 0.00 2.24
3437 7072 7.599245 CGATTAAAAACTACTCAGAGTCCAACT 59.401 37.037 6.27 0.00 0.00 3.16
3438 7073 7.384387 ACGATTAAAAACTACTCAGAGTCCAAC 59.616 37.037 6.27 0.00 0.00 3.77
3439 7074 7.384115 CACGATTAAAAACTACTCAGAGTCCAA 59.616 37.037 6.27 0.00 0.00 3.53
3440 7075 6.866770 CACGATTAAAAACTACTCAGAGTCCA 59.133 38.462 6.27 0.00 0.00 4.02
3441 7076 6.867293 ACACGATTAAAAACTACTCAGAGTCC 59.133 38.462 6.27 0.00 0.00 3.85
3442 7077 7.870588 ACACGATTAAAAACTACTCAGAGTC 57.129 36.000 6.27 0.00 0.00 3.36
3443 7078 8.142551 AGAACACGATTAAAAACTACTCAGAGT 58.857 33.333 8.50 8.50 0.00 3.24
3444 7079 8.522178 AGAACACGATTAAAAACTACTCAGAG 57.478 34.615 0.00 0.00 0.00 3.35
3445 7080 9.970395 TTAGAACACGATTAAAAACTACTCAGA 57.030 29.630 0.00 0.00 0.00 3.27
3452 7087 9.715121 TGTCCTATTAGAACACGATTAAAAACT 57.285 29.630 0.00 0.00 0.00 2.66
3453 7088 9.750882 GTGTCCTATTAGAACACGATTAAAAAC 57.249 33.333 0.00 0.00 34.55 2.43
3454 7089 9.715121 AGTGTCCTATTAGAACACGATTAAAAA 57.285 29.630 7.46 0.00 46.11 1.94
3455 7090 9.715121 AAGTGTCCTATTAGAACACGATTAAAA 57.285 29.630 7.46 0.00 46.11 1.52
3456 7091 9.146984 CAAGTGTCCTATTAGAACACGATTAAA 57.853 33.333 7.46 0.00 46.11 1.52
3457 7092 8.308931 ACAAGTGTCCTATTAGAACACGATTAA 58.691 33.333 7.46 0.00 46.11 1.40
3458 7093 7.833786 ACAAGTGTCCTATTAGAACACGATTA 58.166 34.615 7.46 0.00 46.11 1.75
3459 7094 6.698380 ACAAGTGTCCTATTAGAACACGATT 58.302 36.000 7.46 0.00 46.11 3.34
3460 7095 6.282199 ACAAGTGTCCTATTAGAACACGAT 57.718 37.500 7.46 0.00 46.11 3.73
3461 7096 5.717078 ACAAGTGTCCTATTAGAACACGA 57.283 39.130 7.46 0.00 46.11 4.35
3462 7097 6.696148 GGATACAAGTGTCCTATTAGAACACG 59.304 42.308 7.46 0.00 46.11 4.49
3474 7109 4.538738 AGAGGACTAGGATACAAGTGTCC 58.461 47.826 7.82 7.82 41.07 4.02
3475 7110 7.308109 CGATAAGAGGACTAGGATACAAGTGTC 60.308 44.444 0.00 0.00 41.41 3.67
3476 7111 6.487331 CGATAAGAGGACTAGGATACAAGTGT 59.513 42.308 0.00 0.00 41.41 3.55
3477 7112 6.072397 CCGATAAGAGGACTAGGATACAAGTG 60.072 46.154 0.00 0.00 41.41 3.16
3478 7113 6.005198 CCGATAAGAGGACTAGGATACAAGT 58.995 44.000 0.00 0.00 41.41 3.16
3479 7114 6.005198 ACCGATAAGAGGACTAGGATACAAG 58.995 44.000 0.00 0.00 41.41 3.16
3480 7115 5.950023 ACCGATAAGAGGACTAGGATACAA 58.050 41.667 0.00 0.00 41.41 2.41
3481 7116 5.558818 GACCGATAAGAGGACTAGGATACA 58.441 45.833 0.00 0.00 41.41 2.29
3482 7117 4.630940 CGACCGATAAGAGGACTAGGATAC 59.369 50.000 0.00 0.00 0.00 2.24
3483 7118 4.323333 CCGACCGATAAGAGGACTAGGATA 60.323 50.000 0.00 0.00 0.00 2.59
3484 7119 3.559597 CCGACCGATAAGAGGACTAGGAT 60.560 52.174 0.00 0.00 0.00 3.24
3485 7120 2.224475 CCGACCGATAAGAGGACTAGGA 60.224 54.545 0.00 0.00 0.00 2.94
3486 7121 2.152830 CCGACCGATAAGAGGACTAGG 58.847 57.143 0.00 0.00 0.00 3.02
3487 7122 3.123157 TCCGACCGATAAGAGGACTAG 57.877 52.381 0.00 0.00 0.00 2.57
3488 7123 3.565764 TTCCGACCGATAAGAGGACTA 57.434 47.619 0.00 0.00 0.00 2.59
3489 7124 2.431954 TTCCGACCGATAAGAGGACT 57.568 50.000 0.00 0.00 0.00 3.85
3490 7125 3.515330 TTTTCCGACCGATAAGAGGAC 57.485 47.619 0.00 0.00 0.00 3.85
3491 7126 3.740141 GCATTTTCCGACCGATAAGAGGA 60.740 47.826 0.00 0.00 0.00 3.71
3492 7127 2.544267 GCATTTTCCGACCGATAAGAGG 59.456 50.000 0.00 0.00 0.00 3.69
3493 7128 2.544267 GGCATTTTCCGACCGATAAGAG 59.456 50.000 0.00 0.00 0.00 2.85
3494 7129 2.093394 TGGCATTTTCCGACCGATAAGA 60.093 45.455 0.00 0.00 0.00 2.10
3495 7130 2.285083 TGGCATTTTCCGACCGATAAG 58.715 47.619 0.00 0.00 0.00 1.73
3496 7131 2.404923 TGGCATTTTCCGACCGATAA 57.595 45.000 0.00 0.00 0.00 1.75
3497 7132 2.404923 TTGGCATTTTCCGACCGATA 57.595 45.000 0.00 0.00 0.00 2.92
3498 7133 1.762708 ATTGGCATTTTCCGACCGAT 58.237 45.000 0.00 0.00 0.00 4.18
3499 7134 2.285083 CTATTGGCATTTTCCGACCGA 58.715 47.619 0.00 0.00 0.00 4.69
3500 7135 2.014128 ACTATTGGCATTTTCCGACCG 58.986 47.619 0.00 0.00 0.00 4.79
3501 7136 2.099098 CCACTATTGGCATTTTCCGACC 59.901 50.000 0.00 0.00 35.56 4.79
3502 7137 3.420839 CCACTATTGGCATTTTCCGAC 57.579 47.619 0.00 0.00 35.56 4.79
3518 7153 2.603473 TCCTGTAGCGTGGCCACT 60.603 61.111 32.28 18.20 0.00 4.00
3525 7160 1.413077 GATTAAGGCCTCCTGTAGCGT 59.587 52.381 5.23 0.00 32.13 5.07
3575 7213 1.186390 ATACCCTATACCCTGCCCCT 58.814 55.000 0.00 0.00 0.00 4.79
3592 7230 8.843733 GTTAGCGTTAAATCGATCGAATACATA 58.156 33.333 23.50 8.09 0.00 2.29
3628 8062 6.165659 ACCGAAGAAAATAACGAATGACTG 57.834 37.500 0.00 0.00 0.00 3.51
3799 8239 1.137086 GTGCCCTCTGTCGATGTACAT 59.863 52.381 8.43 8.43 0.00 2.29
4164 8620 9.174166 GGTGTGTCAATACTAATTAATGTTCCT 57.826 33.333 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.