Multiple sequence alignment - TraesCS2D01G504900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G504900 chr2D 100.000 2811 0 0 1 2811 599004810 599002000 0.000000e+00 5192.0
1 TraesCS2D01G504900 chr2D 80.000 145 25 4 229 370 6432841 6432698 1.380000e-18 104.0
2 TraesCS2D01G504900 chr2B 94.647 1345 57 7 615 1951 728398809 728397472 0.000000e+00 2071.0
3 TraesCS2D01G504900 chr2B 90.878 296 7 8 1952 2232 728397436 728397146 2.040000e-101 379.0
4 TraesCS2D01G504900 chr2B 79.641 334 41 9 2402 2717 71348338 71348014 6.100000e-52 215.0
5 TraesCS2D01G504900 chr2B 97.403 77 2 0 2328 2404 728397125 728397049 6.320000e-27 132.0
6 TraesCS2D01G504900 chr2A 94.359 1365 45 16 702 2040 733217664 733216306 0.000000e+00 2065.0
7 TraesCS2D01G504900 chr2A 86.076 474 55 10 1 468 733219903 733219435 1.500000e-137 499.0
8 TraesCS2D01G504900 chr2A 94.872 273 6 2 2035 2302 733215744 733215475 1.200000e-113 420.0
9 TraesCS2D01G504900 chr2A 81.043 422 46 14 2404 2811 137122839 137122438 3.520000e-79 305.0
10 TraesCS2D01G504900 chr2A 80.818 391 49 13 2404 2775 39253576 39253959 1.650000e-72 283.0
11 TraesCS2D01G504900 chr2A 86.275 204 24 3 2404 2605 734971066 734971267 4.710000e-53 219.0
12 TraesCS2D01G504900 chr2A 99.153 118 1 0 2287 2404 733213896 733213779 2.190000e-51 213.0
13 TraesCS2D01G504900 chr7B 96.107 411 16 0 2401 2811 641152425 641152835 0.000000e+00 671.0
14 TraesCS2D01G504900 chr3B 96.098 410 14 1 2404 2811 17497009 17496600 0.000000e+00 667.0
15 TraesCS2D01G504900 chr3B 79.385 325 54 8 1022 1342 365498794 365499109 1.700000e-52 217.0
16 TraesCS2D01G504900 chr3B 82.796 93 15 1 239 331 499162596 499162505 6.450000e-12 82.4
17 TraesCS2D01G504900 chr7D 96.134 388 12 2 2424 2811 519686427 519686043 5.110000e-177 630.0
18 TraesCS2D01G504900 chr7D 80.308 325 59 3 1031 1351 22624659 22624336 1.010000e-59 241.0
19 TraesCS2D01G504900 chr6A 94.146 205 10 2 2609 2811 445285714 445285510 7.560000e-81 311.0
20 TraesCS2D01G504900 chr6A 95.758 165 5 1 2404 2568 445285871 445285709 5.970000e-67 265.0
21 TraesCS2D01G504900 chr5B 80.612 392 49 13 2403 2775 275684111 275683728 7.670000e-71 278.0
22 TraesCS2D01G504900 chr3D 81.711 339 46 8 2392 2717 57191720 57191385 4.620000e-68 268.0
23 TraesCS2D01G504900 chr3D 80.878 319 51 7 1031 1347 544439625 544439935 2.800000e-60 243.0
24 TraesCS2D01G504900 chr3D 79.819 332 51 11 1019 1342 363249638 363249961 7.830000e-56 228.0
25 TraesCS2D01G504900 chr3D 75.743 202 43 6 1423 1621 363250072 363250270 2.300000e-16 97.1
26 TraesCS2D01G504900 chr3A 81.875 320 45 10 1031 1347 681396066 681396375 9.990000e-65 257.0
27 TraesCS2D01G504900 chr5A 80.745 322 52 7 2404 2717 546810621 546810302 2.800000e-60 243.0
28 TraesCS2D01G504900 chr7A 80.435 322 58 3 1031 1348 22976901 22976581 1.010000e-59 241.0
29 TraesCS2D01G504900 chr7A 80.844 308 47 9 1041 1342 709825092 709825393 6.060000e-57 231.0
30 TraesCS2D01G504900 chr6B 87.805 205 24 1 2404 2607 133616403 133616607 3.620000e-59 239.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G504900 chr2D 599002000 599004810 2810 True 5192.000000 5192 100.000000 1 2811 1 chr2D.!!$R2 2810
1 TraesCS2D01G504900 chr2B 728397049 728398809 1760 True 860.666667 2071 94.309333 615 2404 3 chr2B.!!$R2 1789
2 TraesCS2D01G504900 chr2A 733213779 733219903 6124 True 799.250000 2065 93.615000 1 2404 4 chr2A.!!$R2 2403

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 394 0.035056 GCATAGTGGTTGCCCTGACT 60.035 55.0 0.0 0.0 33.95 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1834 3426 0.749454 CCTTAAATGGCTGGCTCGCT 60.749 55.0 2.0 0.0 0.0 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 32 2.216898 GAGTCATGCAGATGTAAGGGC 58.783 52.381 0.00 0.00 0.00 5.19
32 34 2.240667 AGTCATGCAGATGTAAGGGCTT 59.759 45.455 0.00 0.00 0.00 4.35
36 38 1.545582 TGCAGATGTAAGGGCTTTTGC 59.454 47.619 0.00 0.00 46.64 3.68
37 39 1.821136 GCAGATGTAAGGGCTTTTGCT 59.179 47.619 0.00 0.00 46.54 3.91
50 52 2.050836 TTTTGCTCCCTGTCAGGCGA 62.051 55.000 13.99 11.07 32.73 5.54
53 55 3.074999 GCTCCCTGTCAGGCGAGAG 62.075 68.421 28.19 22.41 35.80 3.20
76 78 3.326747 GACTCCGCTCTTGCTTTTCTTA 58.673 45.455 0.00 0.00 36.97 2.10
87 89 7.061557 GCTCTTGCTTTTCTTATGTTCAACATC 59.938 37.037 6.21 0.00 36.82 3.06
107 109 5.046663 ACATCTTGGTTGAGGTTGTGTTTTT 60.047 36.000 0.00 0.00 0.00 1.94
163 165 3.363970 GGATGTGTGACAACGACAATGTC 60.364 47.826 2.75 2.75 45.82 3.06
167 169 2.218603 GTGACAACGACAATGTCCCTT 58.781 47.619 7.91 0.00 45.19 3.95
175 177 2.170607 CGACAATGTCCCTTGGTAGGAT 59.829 50.000 7.91 0.00 45.05 3.24
183 185 2.105821 TCCCTTGGTAGGATTAATGCCG 59.894 50.000 2.98 0.00 45.05 5.69
192 194 1.537202 GGATTAATGCCGCTCACATCC 59.463 52.381 0.00 0.00 0.00 3.51
195 197 0.529773 TAATGCCGCTCACATCCGAC 60.530 55.000 0.00 0.00 0.00 4.79
208 210 4.452733 CCGACCCCCGCACTCTTC 62.453 72.222 0.00 0.00 36.84 2.87
233 235 0.952280 TCTAGCATTCTCGTAGGGCG 59.048 55.000 0.00 0.00 43.01 6.13
237 239 1.421410 GCATTCTCGTAGGGCGTGTG 61.421 60.000 0.00 0.00 42.13 3.82
254 256 1.557371 TGTGGAGGTGTGTCTTTGTCA 59.443 47.619 0.00 0.00 0.00 3.58
270 272 6.151648 GTCTTTGTCAAATCTCATGGGATTCA 59.848 38.462 21.04 12.12 35.19 2.57
272 274 5.183530 TGTCAAATCTCATGGGATTCAGT 57.816 39.130 21.04 3.13 35.19 3.41
278 280 0.107703 TCATGGGATTCAGTCGGTGC 60.108 55.000 0.00 0.00 0.00 5.01
285 287 0.247736 ATTCAGTCGGTGCTGGTCTC 59.752 55.000 0.00 0.00 37.12 3.36
301 303 2.555199 GTCTCCGATGGATCTGTTTGG 58.445 52.381 0.00 0.00 0.00 3.28
305 307 1.668419 CGATGGATCTGTTTGGGTCC 58.332 55.000 0.00 0.00 0.00 4.46
307 309 2.617788 CGATGGATCTGTTTGGGTCCAA 60.618 50.000 0.43 0.00 43.41 3.53
317 319 4.626042 TGTTTGGGTCCAATTTTCATTCG 58.374 39.130 3.00 0.00 35.70 3.34
319 321 5.302059 TGTTTGGGTCCAATTTTCATTCGTA 59.698 36.000 3.00 0.00 35.70 3.43
326 330 6.468000 GGTCCAATTTTCATTCGTATTCGTTC 59.532 38.462 0.00 0.00 38.33 3.95
333 337 6.687653 TTCATTCGTATTCGTTCGTGTTTA 57.312 33.333 0.00 0.00 38.33 2.01
335 339 5.628606 TCATTCGTATTCGTTCGTGTTTACA 59.371 36.000 0.00 0.00 38.33 2.41
336 340 5.879948 TTCGTATTCGTTCGTGTTTACAA 57.120 34.783 0.00 0.00 38.33 2.41
337 341 5.484639 TCGTATTCGTTCGTGTTTACAAG 57.515 39.130 0.00 0.00 38.33 3.16
338 342 4.070224 CGTATTCGTTCGTGTTTACAAGC 58.930 43.478 0.00 0.00 0.00 4.01
346 350 4.002906 TCGTGTTTACAAGCTTGATCCT 57.997 40.909 32.50 12.86 0.00 3.24
359 363 5.674525 AGCTTGATCCTGTCGATTTATGAA 58.325 37.500 0.00 0.00 0.00 2.57
361 365 6.204301 AGCTTGATCCTGTCGATTTATGAATG 59.796 38.462 0.00 0.00 0.00 2.67
370 374 7.225341 CCTGTCGATTTATGAATGTCTTCATCA 59.775 37.037 4.22 0.00 46.83 3.07
378 382 6.862711 ATGAATGTCTTCATCAGCATAGTG 57.137 37.500 0.00 0.00 46.83 2.74
390 394 0.035056 GCATAGTGGTTGCCCTGACT 60.035 55.000 0.00 0.00 33.95 3.41
401 406 2.575993 CCTGACTCGCTGGTCCTG 59.424 66.667 4.00 0.00 35.54 3.86
403 408 0.965866 CCTGACTCGCTGGTCCTGTA 60.966 60.000 0.00 0.00 35.54 2.74
425 430 0.451783 GCCTTAGTGCGATGGTTTGG 59.548 55.000 0.00 0.00 0.00 3.28
444 449 1.519719 CCGGCTTCAAGGAGAGAGG 59.480 63.158 0.00 0.00 0.00 3.69
472 477 4.423231 GCTGCTAGCCTTGGGTTT 57.577 55.556 13.29 0.00 34.48 3.27
473 478 3.569873 GCTGCTAGCCTTGGGTTTA 57.430 52.632 13.29 0.00 34.48 2.01
474 479 1.095600 GCTGCTAGCCTTGGGTTTAC 58.904 55.000 13.29 0.00 34.48 2.01
475 480 1.340114 GCTGCTAGCCTTGGGTTTACT 60.340 52.381 13.29 0.00 34.48 2.24
476 481 2.633488 CTGCTAGCCTTGGGTTTACTC 58.367 52.381 13.29 0.00 0.00 2.59
477 482 2.237392 CTGCTAGCCTTGGGTTTACTCT 59.763 50.000 13.29 0.00 0.00 3.24
478 483 3.446968 TGCTAGCCTTGGGTTTACTCTA 58.553 45.455 13.29 0.00 0.00 2.43
479 484 3.451178 TGCTAGCCTTGGGTTTACTCTAG 59.549 47.826 13.29 0.00 0.00 2.43
480 485 3.451540 GCTAGCCTTGGGTTTACTCTAGT 59.548 47.826 2.29 0.00 0.00 2.57
481 486 4.441773 GCTAGCCTTGGGTTTACTCTAGTC 60.442 50.000 2.29 0.00 0.00 2.59
482 487 3.792515 AGCCTTGGGTTTACTCTAGTCT 58.207 45.455 0.00 0.00 0.00 3.24
483 488 4.168883 AGCCTTGGGTTTACTCTAGTCTT 58.831 43.478 0.00 0.00 0.00 3.01
484 489 4.597940 AGCCTTGGGTTTACTCTAGTCTTT 59.402 41.667 0.00 0.00 0.00 2.52
485 490 4.695928 GCCTTGGGTTTACTCTAGTCTTTG 59.304 45.833 0.00 0.00 0.00 2.77
486 491 5.745181 GCCTTGGGTTTACTCTAGTCTTTGT 60.745 44.000 0.00 0.00 0.00 2.83
487 492 6.519551 GCCTTGGGTTTACTCTAGTCTTTGTA 60.520 42.308 0.00 0.00 0.00 2.41
488 493 7.097834 CCTTGGGTTTACTCTAGTCTTTGTAG 58.902 42.308 0.00 0.00 0.00 2.74
489 494 7.256225 CCTTGGGTTTACTCTAGTCTTTGTAGT 60.256 40.741 0.00 0.00 0.00 2.73
490 495 7.224522 TGGGTTTACTCTAGTCTTTGTAGTC 57.775 40.000 0.00 0.00 0.00 2.59
491 496 6.210185 TGGGTTTACTCTAGTCTTTGTAGTCC 59.790 42.308 0.00 0.00 0.00 3.85
511 516 4.956075 GTCCTTGATGGGTGGATTGTAATT 59.044 41.667 0.00 0.00 36.20 1.40
512 517 5.422012 GTCCTTGATGGGTGGATTGTAATTT 59.578 40.000 0.00 0.00 36.20 1.82
516 521 7.981225 CCTTGATGGGTGGATTGTAATTTTTAG 59.019 37.037 0.00 0.00 0.00 1.85
519 524 9.707957 TGATGGGTGGATTGTAATTTTTAGTAT 57.292 29.630 0.00 0.00 0.00 2.12
538 543 8.568676 TTAGTATCTCTGGTATGCTCAGTATC 57.431 38.462 0.00 0.00 34.15 2.24
539 544 6.789268 AGTATCTCTGGTATGCTCAGTATCT 58.211 40.000 0.00 0.00 34.15 1.98
548 553 6.268387 TGGTATGCTCAGTATCTTCATGATCA 59.732 38.462 0.00 0.00 36.65 2.92
603 608 7.290110 ACACCTAAAAGAAATGAGAAAAGGG 57.710 36.000 0.00 0.00 0.00 3.95
656 661 2.297912 CGGGCGGCGACTAAATACG 61.298 63.158 14.66 1.65 0.00 3.06
721 2301 1.521681 GGCGGTGTCTGGTCATAGC 60.522 63.158 0.00 0.00 0.00 2.97
761 2341 6.265649 AGTTAGTGTGACGGCTATCTATTCAT 59.734 38.462 0.00 0.00 0.00 2.57
805 2385 7.409697 CCACAAGAATATTTCCTATCGTTGTG 58.590 38.462 0.00 0.00 39.86 3.33
806 2386 7.065803 CCACAAGAATATTTCCTATCGTTGTGT 59.934 37.037 9.72 0.00 39.28 3.72
859 2439 1.533338 CGTCTACATCGCAGGGTACAC 60.533 57.143 0.00 0.00 0.00 2.90
943 2529 3.699894 CCTCCCACAGAGCGCAGT 61.700 66.667 11.47 1.42 41.74 4.40
952 2538 2.031560 CACAGAGCGCAGTACAAAAACA 59.968 45.455 11.47 0.00 0.00 2.83
1052 2638 4.357279 GCTCAAGCTGCTGGGGGT 62.357 66.667 5.96 0.00 38.21 4.95
1359 2948 2.673368 CGACCAGGTAAGAATGCAGAAC 59.327 50.000 0.00 0.00 0.00 3.01
1394 2983 3.927142 CCGACACCTTTCAGCTACTTAAG 59.073 47.826 0.00 0.00 0.00 1.85
1830 3422 6.786546 ACTGACCAGTGATACACAGTAGTGG 61.787 48.000 1.31 5.38 44.36 4.00
1842 3434 2.360726 TAGTGGTCGAGCGAGCCA 60.361 61.111 17.90 13.15 41.45 4.75
1843 3435 2.407428 TAGTGGTCGAGCGAGCCAG 61.407 63.158 17.90 0.00 41.45 4.85
2411 6214 9.819267 ACACTTCTTTATAATTACACTAGAGGC 57.181 33.333 0.00 0.00 0.00 4.70
2414 6217 9.482627 CTTCTTTATAATTACACTAGAGGCTGG 57.517 37.037 0.00 0.00 0.00 4.85
2415 6218 7.963532 TCTTTATAATTACACTAGAGGCTGGG 58.036 38.462 0.00 0.00 0.00 4.45
2416 6219 6.681729 TTATAATTACACTAGAGGCTGGGG 57.318 41.667 0.00 0.00 0.00 4.96
2417 6220 1.132500 ATTACACTAGAGGCTGGGGC 58.868 55.000 0.00 0.00 37.82 5.80
2418 6221 1.327690 TTACACTAGAGGCTGGGGCG 61.328 60.000 0.00 0.00 39.81 6.13
2419 6222 4.537433 CACTAGAGGCTGGGGCGC 62.537 72.222 0.00 0.00 39.81 6.53
2440 6243 4.463879 CTGGTGGCGCCTCCTGAG 62.464 72.222 39.01 28.39 38.35 3.35
2449 6252 4.479993 CCTCCTGAGGCGGGCTTG 62.480 72.222 5.24 2.01 42.44 4.01
2450 6253 3.710722 CTCCTGAGGCGGGCTTGT 61.711 66.667 5.24 0.00 0.00 3.16
2451 6254 3.965539 CTCCTGAGGCGGGCTTGTG 62.966 68.421 5.24 0.00 0.00 3.33
2462 6265 2.471255 GGCTTGTGCGCACTTATCT 58.529 52.632 37.59 0.00 40.82 1.98
2463 6266 0.804989 GGCTTGTGCGCACTTATCTT 59.195 50.000 37.59 0.00 40.82 2.40
2464 6267 1.466360 GGCTTGTGCGCACTTATCTTG 60.466 52.381 37.59 20.46 40.82 3.02
2465 6268 1.197721 GCTTGTGCGCACTTATCTTGT 59.802 47.619 37.59 0.00 0.00 3.16
2466 6269 2.726066 GCTTGTGCGCACTTATCTTGTC 60.726 50.000 37.59 11.16 0.00 3.18
2467 6270 2.455674 TGTGCGCACTTATCTTGTCT 57.544 45.000 37.59 0.00 0.00 3.41
2468 6271 2.337583 TGTGCGCACTTATCTTGTCTC 58.662 47.619 37.59 10.40 0.00 3.36
2469 6272 2.288763 TGTGCGCACTTATCTTGTCTCA 60.289 45.455 37.59 13.05 0.00 3.27
2470 6273 2.346847 GTGCGCACTTATCTTGTCTCAG 59.653 50.000 32.55 0.00 0.00 3.35
2471 6274 2.029020 TGCGCACTTATCTTGTCTCAGT 60.029 45.455 5.66 0.00 0.00 3.41
2472 6275 3.192633 TGCGCACTTATCTTGTCTCAGTA 59.807 43.478 5.66 0.00 0.00 2.74
2473 6276 3.548268 GCGCACTTATCTTGTCTCAGTAC 59.452 47.826 0.30 0.00 0.00 2.73
2474 6277 4.733850 CGCACTTATCTTGTCTCAGTACA 58.266 43.478 0.00 0.00 0.00 2.90
2475 6278 5.344066 CGCACTTATCTTGTCTCAGTACAT 58.656 41.667 0.00 0.00 0.00 2.29
2476 6279 5.807520 CGCACTTATCTTGTCTCAGTACATT 59.192 40.000 0.00 0.00 0.00 2.71
2477 6280 6.020281 CGCACTTATCTTGTCTCAGTACATTC 60.020 42.308 0.00 0.00 0.00 2.67
2478 6281 6.256757 GCACTTATCTTGTCTCAGTACATTCC 59.743 42.308 0.00 0.00 0.00 3.01
2479 6282 7.551585 CACTTATCTTGTCTCAGTACATTCCT 58.448 38.462 0.00 0.00 0.00 3.36
2480 6283 7.704472 CACTTATCTTGTCTCAGTACATTCCTC 59.296 40.741 0.00 0.00 0.00 3.71
2481 6284 7.617723 ACTTATCTTGTCTCAGTACATTCCTCT 59.382 37.037 0.00 0.00 0.00 3.69
2482 6285 5.651387 TCTTGTCTCAGTACATTCCTCTG 57.349 43.478 0.00 0.00 0.00 3.35
2483 6286 3.876274 TGTCTCAGTACATTCCTCTGC 57.124 47.619 0.00 0.00 0.00 4.26
2484 6287 2.497675 TGTCTCAGTACATTCCTCTGCC 59.502 50.000 0.00 0.00 0.00 4.85
2485 6288 2.497675 GTCTCAGTACATTCCTCTGCCA 59.502 50.000 0.00 0.00 0.00 4.92
2486 6289 3.133721 GTCTCAGTACATTCCTCTGCCAT 59.866 47.826 0.00 0.00 0.00 4.40
2487 6290 3.133542 TCTCAGTACATTCCTCTGCCATG 59.866 47.826 0.00 0.00 0.00 3.66
2488 6291 2.840038 TCAGTACATTCCTCTGCCATGT 59.160 45.455 0.00 0.00 35.33 3.21
2489 6292 3.264193 TCAGTACATTCCTCTGCCATGTT 59.736 43.478 0.00 0.00 33.19 2.71
2490 6293 4.012374 CAGTACATTCCTCTGCCATGTTT 58.988 43.478 0.00 0.00 33.19 2.83
2491 6294 5.045942 TCAGTACATTCCTCTGCCATGTTTA 60.046 40.000 0.00 0.00 33.19 2.01
2492 6295 5.647658 CAGTACATTCCTCTGCCATGTTTAA 59.352 40.000 0.00 0.00 33.19 1.52
2493 6296 6.319658 CAGTACATTCCTCTGCCATGTTTAAT 59.680 38.462 0.00 0.00 33.19 1.40
2494 6297 6.891908 AGTACATTCCTCTGCCATGTTTAATT 59.108 34.615 0.00 0.00 33.19 1.40
2495 6298 6.212888 ACATTCCTCTGCCATGTTTAATTC 57.787 37.500 0.00 0.00 0.00 2.17
2496 6299 5.954150 ACATTCCTCTGCCATGTTTAATTCT 59.046 36.000 0.00 0.00 0.00 2.40
2497 6300 6.438425 ACATTCCTCTGCCATGTTTAATTCTT 59.562 34.615 0.00 0.00 0.00 2.52
2498 6301 7.615365 ACATTCCTCTGCCATGTTTAATTCTTA 59.385 33.333 0.00 0.00 0.00 2.10
2499 6302 7.630242 TTCCTCTGCCATGTTTAATTCTTAG 57.370 36.000 0.00 0.00 0.00 2.18
2500 6303 6.721318 TCCTCTGCCATGTTTAATTCTTAGT 58.279 36.000 0.00 0.00 0.00 2.24
2501 6304 6.823689 TCCTCTGCCATGTTTAATTCTTAGTC 59.176 38.462 0.00 0.00 0.00 2.59
2502 6305 6.825721 CCTCTGCCATGTTTAATTCTTAGTCT 59.174 38.462 0.00 0.00 0.00 3.24
2503 6306 7.011857 CCTCTGCCATGTTTAATTCTTAGTCTC 59.988 40.741 0.00 0.00 0.00 3.36
2504 6307 6.535150 TCTGCCATGTTTAATTCTTAGTCTCG 59.465 38.462 0.00 0.00 0.00 4.04
2505 6308 5.064707 TGCCATGTTTAATTCTTAGTCTCGC 59.935 40.000 0.00 0.00 0.00 5.03
2506 6309 5.294552 GCCATGTTTAATTCTTAGTCTCGCT 59.705 40.000 0.00 0.00 0.00 4.93
2507 6310 6.510317 GCCATGTTTAATTCTTAGTCTCGCTC 60.510 42.308 0.00 0.00 0.00 5.03
2508 6311 6.535150 CCATGTTTAATTCTTAGTCTCGCTCA 59.465 38.462 0.00 0.00 0.00 4.26
2509 6312 7.225538 CCATGTTTAATTCTTAGTCTCGCTCAT 59.774 37.037 0.00 0.00 0.00 2.90
2510 6313 7.525688 TGTTTAATTCTTAGTCTCGCTCATG 57.474 36.000 0.00 0.00 0.00 3.07
2511 6314 7.097192 TGTTTAATTCTTAGTCTCGCTCATGT 58.903 34.615 0.00 0.00 0.00 3.21
2512 6315 8.248253 TGTTTAATTCTTAGTCTCGCTCATGTA 58.752 33.333 0.00 0.00 0.00 2.29
2513 6316 8.533153 GTTTAATTCTTAGTCTCGCTCATGTAC 58.467 37.037 0.00 0.00 0.00 2.90
2514 6317 5.836821 ATTCTTAGTCTCGCTCATGTACA 57.163 39.130 0.00 0.00 0.00 2.90
2515 6318 5.836821 TTCTTAGTCTCGCTCATGTACAT 57.163 39.130 1.41 1.41 0.00 2.29
2516 6319 5.425577 TCTTAGTCTCGCTCATGTACATC 57.574 43.478 5.07 0.00 0.00 3.06
2517 6320 4.881850 TCTTAGTCTCGCTCATGTACATCA 59.118 41.667 5.07 0.00 0.00 3.07
2518 6321 5.357032 TCTTAGTCTCGCTCATGTACATCAA 59.643 40.000 5.07 0.00 0.00 2.57
2519 6322 4.662468 AGTCTCGCTCATGTACATCAAT 57.338 40.909 5.07 0.00 0.00 2.57
2520 6323 5.774498 AGTCTCGCTCATGTACATCAATA 57.226 39.130 5.07 0.00 0.00 1.90
2521 6324 6.338214 AGTCTCGCTCATGTACATCAATAT 57.662 37.500 5.07 0.00 0.00 1.28
2522 6325 6.155136 AGTCTCGCTCATGTACATCAATATG 58.845 40.000 5.07 0.00 39.17 1.78
2523 6326 5.347093 GTCTCGCTCATGTACATCAATATGG 59.653 44.000 5.07 0.00 37.43 2.74
2524 6327 5.243730 TCTCGCTCATGTACATCAATATGGA 59.756 40.000 5.07 0.00 37.43 3.41
2525 6328 5.230182 TCGCTCATGTACATCAATATGGAC 58.770 41.667 5.07 0.00 45.87 4.02
2536 6339 9.797556 GTACATCAATATGGACGTATGCTATAA 57.202 33.333 0.00 0.00 37.20 0.98
2537 6340 8.703604 ACATCAATATGGACGTATGCTATAAC 57.296 34.615 0.00 0.00 37.43 1.89
2538 6341 8.311109 ACATCAATATGGACGTATGCTATAACA 58.689 33.333 0.00 0.00 37.43 2.41
2539 6342 9.317936 CATCAATATGGACGTATGCTATAACAT 57.682 33.333 0.00 0.00 0.00 2.71
2540 6343 9.890629 ATCAATATGGACGTATGCTATAACATT 57.109 29.630 0.00 0.00 0.00 2.71
2543 6346 9.817809 AATATGGACGTATGCTATAACATTAGG 57.182 33.333 0.00 0.00 0.00 2.69
2544 6347 6.904463 TGGACGTATGCTATAACATTAGGA 57.096 37.500 0.00 0.00 0.00 2.94
2545 6348 7.476540 TGGACGTATGCTATAACATTAGGAT 57.523 36.000 0.00 0.00 34.93 3.24
2546 6349 7.903145 TGGACGTATGCTATAACATTAGGATT 58.097 34.615 0.00 0.00 33.07 3.01
2547 6350 8.372459 TGGACGTATGCTATAACATTAGGATTT 58.628 33.333 0.00 0.00 33.07 2.17
2548 6351 8.870879 GGACGTATGCTATAACATTAGGATTTC 58.129 37.037 0.00 0.00 33.07 2.17
2549 6352 9.640963 GACGTATGCTATAACATTAGGATTTCT 57.359 33.333 0.00 0.00 33.07 2.52
2550 6353 9.998106 ACGTATGCTATAACATTAGGATTTCTT 57.002 29.630 0.00 0.00 33.07 2.52
2560 6363 8.517062 AACATTAGGATTTCTTGATCTCTTGG 57.483 34.615 0.00 0.00 0.00 3.61
2561 6364 7.865820 ACATTAGGATTTCTTGATCTCTTGGA 58.134 34.615 0.00 0.00 0.00 3.53
2562 6365 8.501070 ACATTAGGATTTCTTGATCTCTTGGAT 58.499 33.333 0.00 0.00 37.37 3.41
2563 6366 8.784994 CATTAGGATTTCTTGATCTCTTGGATG 58.215 37.037 0.00 0.00 34.33 3.51
2564 6367 6.324601 AGGATTTCTTGATCTCTTGGATGT 57.675 37.500 0.00 0.00 34.33 3.06
2565 6368 7.443302 AGGATTTCTTGATCTCTTGGATGTA 57.557 36.000 0.00 0.00 34.33 2.29
2566 6369 7.507829 AGGATTTCTTGATCTCTTGGATGTAG 58.492 38.462 0.00 0.00 34.33 2.74
2567 6370 7.346698 AGGATTTCTTGATCTCTTGGATGTAGA 59.653 37.037 0.00 0.00 34.33 2.59
2568 6371 7.656948 GGATTTCTTGATCTCTTGGATGTAGAG 59.343 40.741 0.00 0.00 40.39 2.43
2614 6417 7.578310 CATTCCTTGATGGATAACTGTGAAT 57.422 36.000 0.00 0.00 45.68 2.57
2615 6418 8.681486 CATTCCTTGATGGATAACTGTGAATA 57.319 34.615 0.00 0.00 45.68 1.75
2616 6419 9.123902 CATTCCTTGATGGATAACTGTGAATAA 57.876 33.333 0.00 0.00 45.68 1.40
2617 6420 8.737168 TTCCTTGATGGATAACTGTGAATAAG 57.263 34.615 0.00 0.00 45.68 1.73
2618 6421 6.767902 TCCTTGATGGATAACTGTGAATAAGC 59.232 38.462 0.00 0.00 40.56 3.09
2619 6422 6.769822 CCTTGATGGATAACTGTGAATAAGCT 59.230 38.462 0.00 0.00 38.35 3.74
2620 6423 7.284034 CCTTGATGGATAACTGTGAATAAGCTT 59.716 37.037 3.48 3.48 38.35 3.74
2621 6424 9.330063 CTTGATGGATAACTGTGAATAAGCTTA 57.670 33.333 8.99 8.99 0.00 3.09
2622 6425 8.662781 TGATGGATAACTGTGAATAAGCTTAC 57.337 34.615 8.70 0.00 0.00 2.34
2623 6426 8.264347 TGATGGATAACTGTGAATAAGCTTACA 58.736 33.333 8.70 3.83 0.00 2.41
2624 6427 9.109393 GATGGATAACTGTGAATAAGCTTACAA 57.891 33.333 8.70 0.00 0.00 2.41
2625 6428 9.632638 ATGGATAACTGTGAATAAGCTTACAAT 57.367 29.630 8.70 0.00 0.00 2.71
2632 6435 9.890629 ACTGTGAATAAGCTTACAATAGAATCA 57.109 29.630 8.70 1.41 0.00 2.57
2641 6444 9.559958 AAGCTTACAATAGAATCAATTTCAACG 57.440 29.630 0.00 0.00 36.75 4.10
2642 6445 8.730680 AGCTTACAATAGAATCAATTTCAACGT 58.269 29.630 0.00 0.00 36.75 3.99
2643 6446 8.788813 GCTTACAATAGAATCAATTTCAACGTG 58.211 33.333 0.00 0.00 36.75 4.49
2644 6447 9.825972 CTTACAATAGAATCAATTTCAACGTGT 57.174 29.630 0.00 0.00 36.75 4.49
2647 6450 7.955324 ACAATAGAATCAATTTCAACGTGTACG 59.045 33.333 2.43 2.43 40.04 3.67
2648 6451 5.917541 AGAATCAATTTCAACGTGTACGT 57.082 34.783 3.94 3.94 42.38 3.57
2649 6452 8.692110 ATAGAATCAATTTCAACGTGTACGTA 57.308 30.769 10.73 0.00 43.00 3.57
2650 6453 7.591006 AGAATCAATTTCAACGTGTACGTAT 57.409 32.000 10.73 0.00 43.00 3.06
2651 6454 7.453034 AGAATCAATTTCAACGTGTACGTATG 58.547 34.615 10.73 10.91 43.00 2.39
2652 6455 7.882517 AGAATCAATTTCAACGTGTACGTATGC 60.883 37.037 10.73 0.00 43.00 3.14
2659 6462 2.780361 CGTGTACGTATGCTTGGTTG 57.220 50.000 0.00 0.00 34.11 3.77
2660 6463 1.201877 CGTGTACGTATGCTTGGTTGC 60.202 52.381 0.00 0.00 34.11 4.17
2661 6464 2.073816 GTGTACGTATGCTTGGTTGCT 58.926 47.619 0.00 0.00 0.00 3.91
2662 6465 2.093783 GTGTACGTATGCTTGGTTGCTC 59.906 50.000 0.00 0.00 0.00 4.26
2663 6466 1.664151 GTACGTATGCTTGGTTGCTCC 59.336 52.381 0.00 0.00 0.00 4.70
2664 6467 0.036164 ACGTATGCTTGGTTGCTCCA 59.964 50.000 0.00 0.00 45.60 3.86
2668 6471 0.251922 ATGCTTGGTTGCTCCACCAT 60.252 50.000 4.12 6.10 46.60 3.55
2669 6472 0.895100 TGCTTGGTTGCTCCACCATC 60.895 55.000 4.12 1.57 46.60 3.51
2670 6473 0.610232 GCTTGGTTGCTCCACCATCT 60.610 55.000 4.12 0.00 46.60 2.90
2671 6474 1.340017 GCTTGGTTGCTCCACCATCTA 60.340 52.381 4.12 0.00 46.60 1.98
2672 6475 2.359900 CTTGGTTGCTCCACCATCTAC 58.640 52.381 4.12 0.00 46.60 2.59
2673 6476 1.656587 TGGTTGCTCCACCATCTACT 58.343 50.000 0.00 0.00 42.27 2.57
2674 6477 2.827755 TGGTTGCTCCACCATCTACTA 58.172 47.619 0.00 0.00 42.27 1.82
2675 6478 3.178046 TGGTTGCTCCACCATCTACTAA 58.822 45.455 0.00 0.00 42.27 2.24
2676 6479 3.585289 TGGTTGCTCCACCATCTACTAAA 59.415 43.478 0.00 0.00 42.27 1.85
2677 6480 4.227300 TGGTTGCTCCACCATCTACTAAAT 59.773 41.667 0.00 0.00 42.27 1.40
2678 6481 5.427157 TGGTTGCTCCACCATCTACTAAATA 59.573 40.000 0.00 0.00 42.27 1.40
2679 6482 5.992217 GGTTGCTCCACCATCTACTAAATAG 59.008 44.000 0.00 0.00 36.73 1.73
2680 6483 6.183360 GGTTGCTCCACCATCTACTAAATAGA 60.183 42.308 0.00 0.00 39.05 1.98
2681 6484 6.656632 TGCTCCACCATCTACTAAATAGAG 57.343 41.667 0.00 0.00 43.35 2.43
2682 6485 6.373759 TGCTCCACCATCTACTAAATAGAGA 58.626 40.000 0.00 0.00 43.35 3.10
2683 6486 7.013220 TGCTCCACCATCTACTAAATAGAGAT 58.987 38.462 0.00 0.00 43.35 2.75
2684 6487 7.039434 TGCTCCACCATCTACTAAATAGAGATG 60.039 40.741 15.53 15.53 43.35 2.90
2692 6495 9.717942 CATCTACTAAATAGAGATGGAAAAGGG 57.282 37.037 15.08 0.00 43.35 3.95
2693 6496 9.676129 ATCTACTAAATAGAGATGGAAAAGGGA 57.324 33.333 0.00 0.00 43.35 4.20
2694 6497 9.148879 TCTACTAAATAGAGATGGAAAAGGGAG 57.851 37.037 0.00 0.00 34.80 4.30
2695 6498 7.996758 ACTAAATAGAGATGGAAAAGGGAGA 57.003 36.000 0.00 0.00 0.00 3.71
2696 6499 8.028652 ACTAAATAGAGATGGAAAAGGGAGAG 57.971 38.462 0.00 0.00 0.00 3.20
2697 6500 7.846823 ACTAAATAGAGATGGAAAAGGGAGAGA 59.153 37.037 0.00 0.00 0.00 3.10
2698 6501 6.745794 AATAGAGATGGAAAAGGGAGAGAG 57.254 41.667 0.00 0.00 0.00 3.20
2699 6502 4.344938 AGAGATGGAAAAGGGAGAGAGA 57.655 45.455 0.00 0.00 0.00 3.10
2700 6503 4.289245 AGAGATGGAAAAGGGAGAGAGAG 58.711 47.826 0.00 0.00 0.00 3.20
2701 6504 2.771372 AGATGGAAAAGGGAGAGAGAGC 59.229 50.000 0.00 0.00 0.00 4.09
2702 6505 2.334006 TGGAAAAGGGAGAGAGAGCT 57.666 50.000 0.00 0.00 0.00 4.09
2703 6506 3.474798 TGGAAAAGGGAGAGAGAGCTA 57.525 47.619 0.00 0.00 0.00 3.32
2704 6507 3.100671 TGGAAAAGGGAGAGAGAGCTAC 58.899 50.000 0.00 0.00 0.00 3.58
2705 6508 2.432874 GGAAAAGGGAGAGAGAGCTACC 59.567 54.545 0.00 0.00 39.34 3.18
2706 6509 2.930109 AAAGGGAGAGAGAGCTACCA 57.070 50.000 0.00 0.00 41.70 3.25
2707 6510 3.413105 AAAGGGAGAGAGAGCTACCAT 57.587 47.619 0.00 0.00 41.70 3.55
2708 6511 3.413105 AAGGGAGAGAGAGCTACCATT 57.587 47.619 0.00 0.00 41.70 3.16
2709 6512 4.544564 AAGGGAGAGAGAGCTACCATTA 57.455 45.455 0.00 0.00 41.70 1.90
2710 6513 4.112634 AGGGAGAGAGAGCTACCATTAG 57.887 50.000 0.00 0.00 41.70 1.73
2711 6514 3.724738 AGGGAGAGAGAGCTACCATTAGA 59.275 47.826 0.00 0.00 41.70 2.10
2712 6515 4.356794 AGGGAGAGAGAGCTACCATTAGAT 59.643 45.833 0.00 0.00 41.70 1.98
2713 6516 4.462483 GGGAGAGAGAGCTACCATTAGATG 59.538 50.000 0.00 0.00 38.85 2.90
2734 6537 8.877864 AGATGGAACCTGTATAAGATAGAGAG 57.122 38.462 0.00 0.00 0.00 3.20
2735 6538 7.893302 AGATGGAACCTGTATAAGATAGAGAGG 59.107 40.741 0.00 0.00 36.59 3.69
2736 6539 6.315714 TGGAACCTGTATAAGATAGAGAGGG 58.684 44.000 1.07 0.00 34.97 4.30
2737 6540 6.104243 TGGAACCTGTATAAGATAGAGAGGGA 59.896 42.308 1.07 0.00 34.97 4.20
2738 6541 6.661805 GGAACCTGTATAAGATAGAGAGGGAG 59.338 46.154 1.07 0.00 34.97 4.30
2739 6542 6.147437 ACCTGTATAAGATAGAGAGGGAGG 57.853 45.833 1.07 0.00 34.97 4.30
2740 6543 5.015817 ACCTGTATAAGATAGAGAGGGAGGG 59.984 48.000 1.07 0.00 34.97 4.30
2741 6544 5.254267 CCTGTATAAGATAGAGAGGGAGGGA 59.746 48.000 0.00 0.00 27.64 4.20
2742 6545 6.395780 TGTATAAGATAGAGAGGGAGGGAG 57.604 45.833 0.00 0.00 0.00 4.30
2743 6546 4.965283 ATAAGATAGAGAGGGAGGGAGG 57.035 50.000 0.00 0.00 0.00 4.30
2744 6547 2.542257 AGATAGAGAGGGAGGGAGGA 57.458 55.000 0.00 0.00 0.00 3.71
2745 6548 2.808355 AGATAGAGAGGGAGGGAGGAA 58.192 52.381 0.00 0.00 0.00 3.36
2746 6549 2.721906 AGATAGAGAGGGAGGGAGGAAG 59.278 54.545 0.00 0.00 0.00 3.46
2747 6550 2.305345 TAGAGAGGGAGGGAGGAAGA 57.695 55.000 0.00 0.00 0.00 2.87
2748 6551 1.631536 AGAGAGGGAGGGAGGAAGAT 58.368 55.000 0.00 0.00 0.00 2.40
2749 6552 1.220236 AGAGAGGGAGGGAGGAAGATG 59.780 57.143 0.00 0.00 0.00 2.90
2750 6553 1.219213 GAGAGGGAGGGAGGAAGATGA 59.781 57.143 0.00 0.00 0.00 2.92
2751 6554 1.220236 AGAGGGAGGGAGGAAGATGAG 59.780 57.143 0.00 0.00 0.00 2.90
2752 6555 1.022903 AGGGAGGGAGGAAGATGAGT 58.977 55.000 0.00 0.00 0.00 3.41
2753 6556 1.127343 GGGAGGGAGGAAGATGAGTG 58.873 60.000 0.00 0.00 0.00 3.51
2754 6557 1.127343 GGAGGGAGGAAGATGAGTGG 58.873 60.000 0.00 0.00 0.00 4.00
2755 6558 1.127343 GAGGGAGGAAGATGAGTGGG 58.873 60.000 0.00 0.00 0.00 4.61
2756 6559 0.719015 AGGGAGGAAGATGAGTGGGA 59.281 55.000 0.00 0.00 0.00 4.37
2757 6560 1.127343 GGGAGGAAGATGAGTGGGAG 58.873 60.000 0.00 0.00 0.00 4.30
2758 6561 0.467804 GGAGGAAGATGAGTGGGAGC 59.532 60.000 0.00 0.00 0.00 4.70
2759 6562 1.198713 GAGGAAGATGAGTGGGAGCA 58.801 55.000 0.00 0.00 0.00 4.26
2760 6563 1.556911 GAGGAAGATGAGTGGGAGCAA 59.443 52.381 0.00 0.00 0.00 3.91
2761 6564 1.280421 AGGAAGATGAGTGGGAGCAAC 59.720 52.381 0.00 0.00 0.00 4.17
2762 6565 1.363744 GAAGATGAGTGGGAGCAACG 58.636 55.000 0.00 0.00 0.00 4.10
2763 6566 0.976641 AAGATGAGTGGGAGCAACGA 59.023 50.000 0.00 0.00 0.00 3.85
2764 6567 0.976641 AGATGAGTGGGAGCAACGAA 59.023 50.000 0.00 0.00 0.00 3.85
2765 6568 1.066573 AGATGAGTGGGAGCAACGAAG 60.067 52.381 0.00 0.00 0.00 3.79
2766 6569 0.674895 ATGAGTGGGAGCAACGAAGC 60.675 55.000 0.00 0.00 0.00 3.86
2768 6571 1.294659 GAGTGGGAGCAACGAAGCTG 61.295 60.000 10.83 0.00 46.75 4.24
2769 6572 1.301716 GTGGGAGCAACGAAGCTGA 60.302 57.895 10.83 0.00 46.75 4.26
2770 6573 1.004560 TGGGAGCAACGAAGCTGAG 60.005 57.895 10.83 0.00 46.75 3.35
2771 6574 1.004440 GGGAGCAACGAAGCTGAGT 60.004 57.895 10.83 0.00 46.75 3.41
2772 6575 0.246635 GGGAGCAACGAAGCTGAGTA 59.753 55.000 10.83 0.00 46.75 2.59
2773 6576 1.134670 GGGAGCAACGAAGCTGAGTAT 60.135 52.381 10.83 0.00 46.75 2.12
2774 6577 2.100916 GGGAGCAACGAAGCTGAGTATA 59.899 50.000 10.83 0.00 46.75 1.47
2775 6578 3.117046 GGAGCAACGAAGCTGAGTATAC 58.883 50.000 10.83 0.00 46.75 1.47
2776 6579 3.117046 GAGCAACGAAGCTGAGTATACC 58.883 50.000 10.83 0.00 46.75 2.73
2777 6580 2.159085 AGCAACGAAGCTGAGTATACCC 60.159 50.000 5.61 0.00 44.66 3.69
2778 6581 2.418197 GCAACGAAGCTGAGTATACCCA 60.418 50.000 0.00 0.00 0.00 4.51
2779 6582 3.187700 CAACGAAGCTGAGTATACCCAC 58.812 50.000 0.00 0.00 0.00 4.61
2780 6583 1.755380 ACGAAGCTGAGTATACCCACC 59.245 52.381 0.00 0.00 0.00 4.61
2781 6584 2.032620 CGAAGCTGAGTATACCCACCT 58.967 52.381 0.00 0.00 0.00 4.00
2782 6585 2.223829 CGAAGCTGAGTATACCCACCTG 60.224 54.545 0.00 0.00 0.00 4.00
2783 6586 1.123928 AGCTGAGTATACCCACCTGC 58.876 55.000 0.00 3.15 0.00 4.85
2784 6587 1.123928 GCTGAGTATACCCACCTGCT 58.876 55.000 0.00 0.00 0.00 4.24
2785 6588 1.202580 GCTGAGTATACCCACCTGCTG 60.203 57.143 0.00 0.00 0.00 4.41
2786 6589 0.830648 TGAGTATACCCACCTGCTGC 59.169 55.000 0.00 0.00 0.00 5.25
2787 6590 0.830648 GAGTATACCCACCTGCTGCA 59.169 55.000 0.88 0.88 0.00 4.41
2788 6591 0.541863 AGTATACCCACCTGCTGCAC 59.458 55.000 0.00 0.00 0.00 4.57
2789 6592 0.810031 GTATACCCACCTGCTGCACG 60.810 60.000 0.00 0.00 0.00 5.34
2790 6593 1.261938 TATACCCACCTGCTGCACGT 61.262 55.000 0.00 0.00 0.00 4.49
2791 6594 2.803155 ATACCCACCTGCTGCACGTG 62.803 60.000 20.30 20.30 0.00 4.49
2793 6596 4.935495 CCACCTGCTGCACGTGGT 62.935 66.667 30.52 20.46 41.80 4.16
2794 6597 2.030412 CACCTGCTGCACGTGGTA 59.970 61.111 18.88 0.00 0.00 3.25
2795 6598 2.029288 CACCTGCTGCACGTGGTAG 61.029 63.158 18.88 10.15 0.00 3.18
2796 6599 2.207229 ACCTGCTGCACGTGGTAGA 61.207 57.895 18.88 0.00 0.00 2.59
2797 6600 1.738099 CCTGCTGCACGTGGTAGAC 60.738 63.158 18.88 0.00 0.00 2.59
2798 6601 1.290324 CTGCTGCACGTGGTAGACT 59.710 57.895 18.88 0.00 0.00 3.24
2799 6602 1.006220 TGCTGCACGTGGTAGACTG 60.006 57.895 18.88 5.21 0.00 3.51
2800 6603 1.289066 GCTGCACGTGGTAGACTGA 59.711 57.895 18.88 0.00 0.00 3.41
2801 6604 0.319555 GCTGCACGTGGTAGACTGAA 60.320 55.000 18.88 0.00 0.00 3.02
2802 6605 1.872237 GCTGCACGTGGTAGACTGAAA 60.872 52.381 18.88 0.00 0.00 2.69
2803 6606 2.061773 CTGCACGTGGTAGACTGAAAG 58.938 52.381 18.88 0.00 42.29 2.62
2804 6607 1.270094 TGCACGTGGTAGACTGAAAGG 60.270 52.381 18.88 0.00 39.30 3.11
2805 6608 1.000506 GCACGTGGTAGACTGAAAGGA 59.999 52.381 18.88 0.00 39.30 3.36
2806 6609 2.927014 GCACGTGGTAGACTGAAAGGAG 60.927 54.545 18.88 0.00 39.30 3.69
2807 6610 1.893801 ACGTGGTAGACTGAAAGGAGG 59.106 52.381 0.00 0.00 39.30 4.30
2808 6611 1.204941 CGTGGTAGACTGAAAGGAGGG 59.795 57.143 0.00 0.00 39.30 4.30
2809 6612 1.555533 GTGGTAGACTGAAAGGAGGGG 59.444 57.143 0.00 0.00 39.30 4.79
2810 6613 1.205055 GGTAGACTGAAAGGAGGGGG 58.795 60.000 0.00 0.00 39.30 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.158842 AGCCCTTACATCTGCATGACTC 60.159 50.000 0.00 0.00 33.72 3.36
11 12 1.842562 AGCCCTTACATCTGCATGACT 59.157 47.619 0.00 0.00 33.72 3.41
30 32 1.580845 CGCCTGACAGGGAGCAAAAG 61.581 60.000 23.09 0.00 35.37 2.27
32 34 2.032528 CGCCTGACAGGGAGCAAA 59.967 61.111 23.09 0.00 35.37 3.68
36 38 2.422231 CCTCTCGCCTGACAGGGAG 61.422 68.421 23.09 23.52 35.37 4.30
37 39 2.363018 CCTCTCGCCTGACAGGGA 60.363 66.667 23.09 16.23 35.37 4.20
38 40 3.465403 CCCTCTCGCCTGACAGGG 61.465 72.222 23.09 12.91 43.11 4.45
41 43 1.679305 GAGTCCCTCTCGCCTGACA 60.679 63.158 0.00 0.00 33.25 3.58
50 52 2.355193 GCAAGAGCGGAGTCCCTCT 61.355 63.158 19.16 19.16 40.00 3.69
66 68 7.147312 CCAAGATGTTGAACATAAGAAAAGCA 58.853 34.615 11.28 0.00 39.27 3.91
68 70 8.971321 CAACCAAGATGTTGAACATAAGAAAAG 58.029 33.333 11.28 0.00 46.77 2.27
133 135 0.553333 TGTCACACATCCCCAACCAA 59.447 50.000 0.00 0.00 0.00 3.67
163 165 2.504367 CGGCATTAATCCTACCAAGGG 58.496 52.381 0.00 0.00 43.84 3.95
167 169 1.765904 TGAGCGGCATTAATCCTACCA 59.234 47.619 1.45 0.00 0.00 3.25
175 177 0.176910 TCGGATGTGAGCGGCATTAA 59.823 50.000 1.45 0.00 0.00 1.40
183 185 4.530857 CGGGGGTCGGATGTGAGC 62.531 72.222 0.00 0.00 35.66 4.26
192 194 4.796231 CGAAGAGTGCGGGGGTCG 62.796 72.222 0.00 0.00 42.76 4.79
212 214 1.335142 GCCCTACGAGAATGCTAGACG 60.335 57.143 0.00 0.00 0.00 4.18
226 228 2.264794 CACCTCCACACGCCCTAC 59.735 66.667 0.00 0.00 0.00 3.18
233 235 1.940613 GACAAAGACACACCTCCACAC 59.059 52.381 0.00 0.00 0.00 3.82
237 239 4.137543 AGATTTGACAAAGACACACCTCC 58.862 43.478 6.77 0.00 0.00 4.30
254 256 3.200825 ACCGACTGAATCCCATGAGATTT 59.799 43.478 3.75 0.00 36.60 2.17
278 280 1.407936 ACAGATCCATCGGAGACCAG 58.592 55.000 0.00 0.00 42.51 4.00
285 287 1.668419 GACCCAAACAGATCCATCGG 58.332 55.000 0.00 0.00 0.00 4.18
287 289 2.806945 TGGACCCAAACAGATCCATC 57.193 50.000 0.00 0.00 36.30 3.51
288 290 3.763557 ATTGGACCCAAACAGATCCAT 57.236 42.857 5.49 0.00 40.87 3.41
301 303 5.875930 ACGAATACGAATGAAAATTGGACC 58.124 37.500 0.00 0.00 42.66 4.46
305 307 6.518395 ACACGAACGAATACGAATGAAAATTG 59.482 34.615 0.14 0.00 42.66 2.32
307 309 6.160664 ACACGAACGAATACGAATGAAAAT 57.839 33.333 0.14 0.00 42.66 1.82
317 319 5.260027 AGCTTGTAAACACGAACGAATAC 57.740 39.130 0.14 0.12 0.00 1.89
319 321 4.271533 TCAAGCTTGTAAACACGAACGAAT 59.728 37.500 25.19 0.00 0.00 3.34
326 330 3.498397 ACAGGATCAAGCTTGTAAACACG 59.502 43.478 25.19 11.75 0.00 4.49
333 337 3.340814 AATCGACAGGATCAAGCTTGT 57.659 42.857 25.19 13.20 33.02 3.16
335 339 5.674525 TCATAAATCGACAGGATCAAGCTT 58.325 37.500 0.00 0.00 33.02 3.74
336 340 5.282055 TCATAAATCGACAGGATCAAGCT 57.718 39.130 0.00 0.00 33.02 3.74
337 341 5.991328 TTCATAAATCGACAGGATCAAGC 57.009 39.130 0.00 0.00 33.02 4.01
338 342 7.440556 AGACATTCATAAATCGACAGGATCAAG 59.559 37.037 0.00 0.00 33.02 3.02
359 363 4.767578 ACCACTATGCTGATGAAGACAT 57.232 40.909 0.00 0.00 39.67 3.06
361 365 3.064545 GCAACCACTATGCTGATGAAGAC 59.935 47.826 0.00 0.00 40.64 3.01
390 394 3.075005 GCCCTACAGGACCAGCGA 61.075 66.667 0.00 0.00 38.24 4.93
401 406 0.249911 CCATCGCACTAAGGCCCTAC 60.250 60.000 0.00 0.00 0.00 3.18
403 408 1.562672 AACCATCGCACTAAGGCCCT 61.563 55.000 0.00 0.00 0.00 5.19
409 414 1.302383 CGGCCAAACCATCGCACTAA 61.302 55.000 2.24 0.00 39.03 2.24
425 430 1.153469 CTCTCTCCTTGAAGCCGGC 60.153 63.158 21.89 21.89 0.00 6.13
430 435 0.972983 TCGCCCCTCTCTCCTTGAAG 60.973 60.000 0.00 0.00 0.00 3.02
444 449 4.221422 TAGCAGCCGTCATCGCCC 62.221 66.667 0.00 0.00 35.54 6.13
464 469 7.668492 ACTACAAAGACTAGAGTAAACCCAAG 58.332 38.462 0.00 0.00 0.00 3.61
465 470 7.256083 GGACTACAAAGACTAGAGTAAACCCAA 60.256 40.741 0.00 0.00 0.00 4.12
466 471 6.210185 GGACTACAAAGACTAGAGTAAACCCA 59.790 42.308 0.00 0.00 0.00 4.51
467 472 6.436847 AGGACTACAAAGACTAGAGTAAACCC 59.563 42.308 0.00 0.00 0.00 4.11
468 473 7.465353 AGGACTACAAAGACTAGAGTAAACC 57.535 40.000 0.00 0.00 0.00 3.27
469 474 8.574737 TCAAGGACTACAAAGACTAGAGTAAAC 58.425 37.037 0.00 0.00 0.00 2.01
470 475 8.701908 TCAAGGACTACAAAGACTAGAGTAAA 57.298 34.615 0.00 0.00 0.00 2.01
471 476 8.740906 CATCAAGGACTACAAAGACTAGAGTAA 58.259 37.037 0.00 0.00 0.00 2.24
472 477 7.339721 CCATCAAGGACTACAAAGACTAGAGTA 59.660 40.741 0.00 0.00 41.22 2.59
473 478 6.153680 CCATCAAGGACTACAAAGACTAGAGT 59.846 42.308 0.00 0.00 41.22 3.24
474 479 6.406400 CCCATCAAGGACTACAAAGACTAGAG 60.406 46.154 0.00 0.00 41.22 2.43
475 480 5.422331 CCCATCAAGGACTACAAAGACTAGA 59.578 44.000 0.00 0.00 41.22 2.43
476 481 5.187967 ACCCATCAAGGACTACAAAGACTAG 59.812 44.000 0.00 0.00 41.22 2.57
477 482 5.046591 CACCCATCAAGGACTACAAAGACTA 60.047 44.000 0.00 0.00 41.22 2.59
478 483 3.910627 ACCCATCAAGGACTACAAAGACT 59.089 43.478 0.00 0.00 41.22 3.24
479 484 4.003648 CACCCATCAAGGACTACAAAGAC 58.996 47.826 0.00 0.00 41.22 3.01
480 485 3.009033 CCACCCATCAAGGACTACAAAGA 59.991 47.826 0.00 0.00 41.22 2.52
481 486 3.009033 TCCACCCATCAAGGACTACAAAG 59.991 47.826 0.00 0.00 41.22 2.77
482 487 2.983192 TCCACCCATCAAGGACTACAAA 59.017 45.455 0.00 0.00 41.22 2.83
483 488 2.626785 TCCACCCATCAAGGACTACAA 58.373 47.619 0.00 0.00 41.22 2.41
484 489 2.335681 TCCACCCATCAAGGACTACA 57.664 50.000 0.00 0.00 41.22 2.74
485 490 3.054361 ACAATCCACCCATCAAGGACTAC 60.054 47.826 0.00 0.00 41.22 2.73
486 491 3.189606 ACAATCCACCCATCAAGGACTA 58.810 45.455 0.00 0.00 41.22 2.59
487 492 1.995542 ACAATCCACCCATCAAGGACT 59.004 47.619 0.00 0.00 41.22 3.85
488 493 2.514458 ACAATCCACCCATCAAGGAC 57.486 50.000 0.00 0.00 41.22 3.85
489 494 4.879295 ATTACAATCCACCCATCAAGGA 57.121 40.909 0.00 0.00 41.22 3.36
490 495 5.937975 AAATTACAATCCACCCATCAAGG 57.062 39.130 0.00 0.00 37.03 3.61
491 496 8.531146 ACTAAAAATTACAATCCACCCATCAAG 58.469 33.333 0.00 0.00 0.00 3.02
511 516 7.661536 ACTGAGCATACCAGAGATACTAAAA 57.338 36.000 0.00 0.00 35.69 1.52
512 517 8.941995 ATACTGAGCATACCAGAGATACTAAA 57.058 34.615 0.00 0.00 35.69 1.85
516 521 7.175816 TGAAGATACTGAGCATACCAGAGATAC 59.824 40.741 0.00 0.00 35.69 2.24
519 524 5.449553 TGAAGATACTGAGCATACCAGAGA 58.550 41.667 0.00 0.00 35.69 3.10
529 534 9.433153 TCATAATTGATCATGAAGATACTGAGC 57.567 33.333 0.00 0.00 37.00 4.26
538 543 8.943002 TCGATCCATTCATAATTGATCATGAAG 58.057 33.333 13.35 7.17 42.67 3.02
539 544 8.851541 TCGATCCATTCATAATTGATCATGAA 57.148 30.769 10.95 10.95 43.34 2.57
579 584 7.066781 TCCCTTTTCTCATTTCTTTTAGGTGT 58.933 34.615 0.00 0.00 0.00 4.16
580 585 7.524717 TCCCTTTTCTCATTTCTTTTAGGTG 57.475 36.000 0.00 0.00 0.00 4.00
581 586 9.997172 ATATCCCTTTTCTCATTTCTTTTAGGT 57.003 29.630 0.00 0.00 0.00 3.08
589 594 8.525290 TCAAGGAATATCCCTTTTCTCATTTC 57.475 34.615 0.00 0.00 43.68 2.17
590 595 8.899887 TTCAAGGAATATCCCTTTTCTCATTT 57.100 30.769 0.00 0.00 43.68 2.32
591 596 7.562821 CCTTCAAGGAATATCCCTTTTCTCATT 59.437 37.037 0.00 0.00 43.68 2.57
593 598 6.426587 CCTTCAAGGAATATCCCTTTTCTCA 58.573 40.000 0.00 0.00 43.68 3.27
594 599 5.300539 GCCTTCAAGGAATATCCCTTTTCTC 59.699 44.000 7.98 0.00 43.68 2.87
595 600 5.043806 AGCCTTCAAGGAATATCCCTTTTCT 60.044 40.000 7.98 0.00 43.68 2.52
596 601 5.068329 CAGCCTTCAAGGAATATCCCTTTTC 59.932 44.000 7.98 0.00 43.68 2.29
597 602 4.958581 CAGCCTTCAAGGAATATCCCTTTT 59.041 41.667 7.98 0.00 43.68 2.27
598 603 4.017130 ACAGCCTTCAAGGAATATCCCTTT 60.017 41.667 7.98 0.00 43.68 3.11
603 608 2.620585 GGCACAGCCTTCAAGGAATATC 59.379 50.000 7.98 0.00 46.69 1.63
707 2287 0.905357 ACCAGGCTATGACCAGACAC 59.095 55.000 0.00 0.00 0.00 3.67
721 2301 3.128938 CACTAACTCCTTCGTCTACCAGG 59.871 52.174 0.00 0.00 0.00 4.45
819 2399 2.680913 CGGCTATAAGCATGGCGCC 61.681 63.158 22.73 22.73 44.75 6.53
820 2400 2.863153 CGGCTATAAGCATGGCGC 59.137 61.111 0.00 0.00 44.75 6.53
859 2439 0.872451 TGTGGTCGTTACAGTGCGTG 60.872 55.000 0.00 0.00 0.00 5.34
932 2518 2.285083 TGTTTTTGTACTGCGCTCTGT 58.715 42.857 9.73 7.75 0.00 3.41
943 2529 2.163412 GCCGATGGCTGATGTTTTTGTA 59.837 45.455 0.00 0.00 46.69 2.41
1017 2603 1.000771 CTCGTCACTCCCTCCTCCA 60.001 63.158 0.00 0.00 0.00 3.86
1359 2948 0.792640 GTGTCGGTGTTCATCTGCAG 59.207 55.000 7.63 7.63 0.00 4.41
1394 2983 2.860628 CGCACGCAAGGATCTACGC 61.861 63.158 0.00 0.00 46.39 4.42
1643 3232 2.932234 CGTCCAGGAGGTTCACGCT 61.932 63.158 0.44 0.00 35.89 5.07
1830 3422 4.521062 ATGGCTGGCTCGCTCGAC 62.521 66.667 2.00 0.00 0.00 4.20
1834 3426 0.749454 CCTTAAATGGCTGGCTCGCT 60.749 55.000 2.00 0.00 0.00 4.93
2003 3630 6.591750 TGCCCCGAATAAGTATTTGAAAAA 57.408 33.333 0.56 0.00 30.22 1.94
2113 4322 6.434028 TGCCAAAAGAATGCACTATTTAGAGT 59.566 34.615 0.00 0.00 0.00 3.24
2247 4456 9.988815 GACTAGAATGAAGATGAGCCTAATAAA 57.011 33.333 0.00 0.00 0.00 1.40
2248 4457 9.147732 TGACTAGAATGAAGATGAGCCTAATAA 57.852 33.333 0.00 0.00 0.00 1.40
2249 4458 8.580720 GTGACTAGAATGAAGATGAGCCTAATA 58.419 37.037 0.00 0.00 0.00 0.98
2250 4459 7.441017 GTGACTAGAATGAAGATGAGCCTAAT 58.559 38.462 0.00 0.00 0.00 1.73
2254 4463 4.047822 CGTGACTAGAATGAAGATGAGCC 58.952 47.826 0.00 0.00 0.00 4.70
2423 6226 4.463879 CTCAGGAGGCGCCACCAG 62.464 72.222 39.03 32.69 43.14 4.00
2433 6236 3.710722 ACAAGCCCGCCTCAGGAG 61.711 66.667 0.00 0.00 0.00 3.69
2434 6237 4.020617 CACAAGCCCGCCTCAGGA 62.021 66.667 0.00 0.00 0.00 3.86
2442 6245 2.309764 GATAAGTGCGCACAAGCCCG 62.310 60.000 39.21 0.00 37.52 6.13
2443 6246 1.026718 AGATAAGTGCGCACAAGCCC 61.027 55.000 39.21 23.61 37.52 5.19
2444 6247 0.804989 AAGATAAGTGCGCACAAGCC 59.195 50.000 39.21 24.93 37.52 4.35
2445 6248 1.197721 ACAAGATAAGTGCGCACAAGC 59.802 47.619 39.21 28.84 37.71 4.01
2446 6249 2.738846 AGACAAGATAAGTGCGCACAAG 59.261 45.455 39.21 22.15 0.00 3.16
2447 6250 2.736721 GAGACAAGATAAGTGCGCACAA 59.263 45.455 39.21 27.74 0.00 3.33
2448 6251 2.288763 TGAGACAAGATAAGTGCGCACA 60.289 45.455 39.21 22.69 0.00 4.57
2449 6252 2.337583 TGAGACAAGATAAGTGCGCAC 58.662 47.619 32.79 32.79 0.00 5.34
2450 6253 2.029020 ACTGAGACAAGATAAGTGCGCA 60.029 45.455 5.66 5.66 0.00 6.09
2451 6254 2.611518 ACTGAGACAAGATAAGTGCGC 58.388 47.619 0.00 0.00 0.00 6.09
2452 6255 4.733850 TGTACTGAGACAAGATAAGTGCG 58.266 43.478 0.00 0.00 0.00 5.34
2453 6256 6.256757 GGAATGTACTGAGACAAGATAAGTGC 59.743 42.308 0.00 0.00 31.83 4.40
2454 6257 7.551585 AGGAATGTACTGAGACAAGATAAGTG 58.448 38.462 0.00 0.00 31.83 3.16
2455 6258 7.617723 AGAGGAATGTACTGAGACAAGATAAGT 59.382 37.037 0.00 0.00 31.83 2.24
2456 6259 7.920151 CAGAGGAATGTACTGAGACAAGATAAG 59.080 40.741 0.00 0.00 34.07 1.73
2457 6260 7.631594 GCAGAGGAATGTACTGAGACAAGATAA 60.632 40.741 0.00 0.00 34.07 1.75
2458 6261 6.183360 GCAGAGGAATGTACTGAGACAAGATA 60.183 42.308 0.00 0.00 34.07 1.98
2459 6262 5.395103 GCAGAGGAATGTACTGAGACAAGAT 60.395 44.000 0.00 0.00 34.07 2.40
2460 6263 4.081972 GCAGAGGAATGTACTGAGACAAGA 60.082 45.833 0.00 0.00 34.07 3.02
2461 6264 4.180057 GCAGAGGAATGTACTGAGACAAG 58.820 47.826 0.00 0.00 34.07 3.16
2462 6265 3.055819 GGCAGAGGAATGTACTGAGACAA 60.056 47.826 0.00 0.00 34.07 3.18
2463 6266 2.497675 GGCAGAGGAATGTACTGAGACA 59.502 50.000 0.00 0.00 34.07 3.41
2464 6267 2.497675 TGGCAGAGGAATGTACTGAGAC 59.502 50.000 0.00 0.00 34.07 3.36
2465 6268 2.820178 TGGCAGAGGAATGTACTGAGA 58.180 47.619 0.00 0.00 34.07 3.27
2466 6269 3.118482 ACATGGCAGAGGAATGTACTGAG 60.118 47.826 0.00 0.00 32.86 3.35
2467 6270 2.840038 ACATGGCAGAGGAATGTACTGA 59.160 45.455 0.00 0.00 32.86 3.41
2468 6271 3.272574 ACATGGCAGAGGAATGTACTG 57.727 47.619 0.00 0.00 32.86 2.74
2469 6272 4.307032 AAACATGGCAGAGGAATGTACT 57.693 40.909 0.00 0.00 33.48 2.73
2470 6273 6.699575 ATTAAACATGGCAGAGGAATGTAC 57.300 37.500 0.00 0.00 33.48 2.90
2471 6274 7.118723 AGAATTAAACATGGCAGAGGAATGTA 58.881 34.615 0.00 0.00 33.48 2.29
2472 6275 5.954150 AGAATTAAACATGGCAGAGGAATGT 59.046 36.000 0.00 0.00 36.10 2.71
2473 6276 6.461110 AGAATTAAACATGGCAGAGGAATG 57.539 37.500 0.00 0.00 0.00 2.67
2474 6277 7.836183 ACTAAGAATTAAACATGGCAGAGGAAT 59.164 33.333 0.00 0.00 0.00 3.01
2475 6278 7.175104 ACTAAGAATTAAACATGGCAGAGGAA 58.825 34.615 0.00 0.00 0.00 3.36
2476 6279 6.721318 ACTAAGAATTAAACATGGCAGAGGA 58.279 36.000 0.00 0.00 0.00 3.71
2477 6280 6.825721 AGACTAAGAATTAAACATGGCAGAGG 59.174 38.462 0.00 0.00 0.00 3.69
2478 6281 7.254252 CGAGACTAAGAATTAAACATGGCAGAG 60.254 40.741 0.00 0.00 0.00 3.35
2479 6282 6.535150 CGAGACTAAGAATTAAACATGGCAGA 59.465 38.462 0.00 0.00 0.00 4.26
2480 6283 6.709643 CGAGACTAAGAATTAAACATGGCAG 58.290 40.000 0.00 0.00 0.00 4.85
2481 6284 5.064707 GCGAGACTAAGAATTAAACATGGCA 59.935 40.000 0.00 0.00 0.00 4.92
2482 6285 5.294552 AGCGAGACTAAGAATTAAACATGGC 59.705 40.000 0.00 0.00 0.00 4.40
2483 6286 6.535150 TGAGCGAGACTAAGAATTAAACATGG 59.465 38.462 0.00 0.00 0.00 3.66
2484 6287 7.525688 TGAGCGAGACTAAGAATTAAACATG 57.474 36.000 0.00 0.00 0.00 3.21
2485 6288 7.766278 ACATGAGCGAGACTAAGAATTAAACAT 59.234 33.333 0.00 0.00 0.00 2.71
2486 6289 7.097192 ACATGAGCGAGACTAAGAATTAAACA 58.903 34.615 0.00 0.00 0.00 2.83
2487 6290 7.527084 ACATGAGCGAGACTAAGAATTAAAC 57.473 36.000 0.00 0.00 0.00 2.01
2488 6291 8.248253 TGTACATGAGCGAGACTAAGAATTAAA 58.752 33.333 0.00 0.00 0.00 1.52
2489 6292 7.768240 TGTACATGAGCGAGACTAAGAATTAA 58.232 34.615 0.00 0.00 0.00 1.40
2490 6293 7.329588 TGTACATGAGCGAGACTAAGAATTA 57.670 36.000 0.00 0.00 0.00 1.40
2491 6294 6.208988 TGTACATGAGCGAGACTAAGAATT 57.791 37.500 0.00 0.00 0.00 2.17
2492 6295 5.836821 TGTACATGAGCGAGACTAAGAAT 57.163 39.130 0.00 0.00 0.00 2.40
2493 6296 5.357032 TGATGTACATGAGCGAGACTAAGAA 59.643 40.000 14.43 0.00 0.00 2.52
2494 6297 4.881850 TGATGTACATGAGCGAGACTAAGA 59.118 41.667 14.43 0.00 0.00 2.10
2495 6298 5.175090 TGATGTACATGAGCGAGACTAAG 57.825 43.478 14.43 0.00 0.00 2.18
2496 6299 5.576447 TTGATGTACATGAGCGAGACTAA 57.424 39.130 14.43 0.00 0.00 2.24
2497 6300 5.774498 ATTGATGTACATGAGCGAGACTA 57.226 39.130 14.43 0.00 0.00 2.59
2498 6301 4.662468 ATTGATGTACATGAGCGAGACT 57.338 40.909 14.43 0.00 0.00 3.24
2499 6302 5.347093 CCATATTGATGTACATGAGCGAGAC 59.653 44.000 14.43 0.00 0.00 3.36
2500 6303 5.243730 TCCATATTGATGTACATGAGCGAGA 59.756 40.000 14.43 0.00 0.00 4.04
2501 6304 5.347093 GTCCATATTGATGTACATGAGCGAG 59.653 44.000 14.43 0.00 0.00 5.03
2502 6305 5.230182 GTCCATATTGATGTACATGAGCGA 58.770 41.667 14.43 0.00 0.00 4.93
2503 6306 4.090498 CGTCCATATTGATGTACATGAGCG 59.910 45.833 14.43 5.61 0.00 5.03
2504 6307 4.991056 ACGTCCATATTGATGTACATGAGC 59.009 41.667 14.43 0.00 32.80 4.26
2505 6308 7.201470 GCATACGTCCATATTGATGTACATGAG 60.201 40.741 14.43 0.00 39.02 2.90
2506 6309 6.589907 GCATACGTCCATATTGATGTACATGA 59.410 38.462 14.43 0.68 39.02 3.07
2507 6310 6.591448 AGCATACGTCCATATTGATGTACATG 59.409 38.462 14.43 8.57 39.02 3.21
2508 6311 6.701340 AGCATACGTCCATATTGATGTACAT 58.299 36.000 8.43 8.43 39.02 2.29
2509 6312 6.096673 AGCATACGTCCATATTGATGTACA 57.903 37.500 10.25 0.00 39.02 2.90
2510 6313 9.797556 TTATAGCATACGTCCATATTGATGTAC 57.202 33.333 10.25 1.32 39.02 2.90
2511 6314 9.797556 GTTATAGCATACGTCCATATTGATGTA 57.202 33.333 10.41 10.41 40.13 2.29
2512 6315 8.311109 TGTTATAGCATACGTCCATATTGATGT 58.689 33.333 6.85 6.85 38.09 3.06
2513 6316 8.702163 TGTTATAGCATACGTCCATATTGATG 57.298 34.615 0.00 0.00 0.00 3.07
2514 6317 9.890629 AATGTTATAGCATACGTCCATATTGAT 57.109 29.630 2.17 0.00 0.00 2.57
2517 6320 9.817809 CCTAATGTTATAGCATACGTCCATATT 57.182 33.333 2.17 0.00 0.00 1.28
2518 6321 9.197306 TCCTAATGTTATAGCATACGTCCATAT 57.803 33.333 2.17 0.00 0.00 1.78
2519 6322 8.584063 TCCTAATGTTATAGCATACGTCCATA 57.416 34.615 2.17 0.00 0.00 2.74
2520 6323 7.476540 TCCTAATGTTATAGCATACGTCCAT 57.523 36.000 2.17 0.00 0.00 3.41
2521 6324 6.904463 TCCTAATGTTATAGCATACGTCCA 57.096 37.500 2.17 0.00 0.00 4.02
2522 6325 8.773404 AAATCCTAATGTTATAGCATACGTCC 57.227 34.615 2.17 0.00 0.00 4.79
2523 6326 9.640963 AGAAATCCTAATGTTATAGCATACGTC 57.359 33.333 2.17 0.00 0.00 4.34
2524 6327 9.998106 AAGAAATCCTAATGTTATAGCATACGT 57.002 29.630 2.17 0.00 0.00 3.57
2534 6337 9.618890 CCAAGAGATCAAGAAATCCTAATGTTA 57.381 33.333 0.00 0.00 0.00 2.41
2535 6338 8.331740 TCCAAGAGATCAAGAAATCCTAATGTT 58.668 33.333 0.00 0.00 0.00 2.71
2536 6339 7.865820 TCCAAGAGATCAAGAAATCCTAATGT 58.134 34.615 0.00 0.00 0.00 2.71
2537 6340 8.784994 CATCCAAGAGATCAAGAAATCCTAATG 58.215 37.037 0.00 0.00 30.59 1.90
2538 6341 8.501070 ACATCCAAGAGATCAAGAAATCCTAAT 58.499 33.333 0.00 0.00 30.59 1.73
2539 6342 7.865820 ACATCCAAGAGATCAAGAAATCCTAA 58.134 34.615 0.00 0.00 30.59 2.69
2540 6343 7.443302 ACATCCAAGAGATCAAGAAATCCTA 57.557 36.000 0.00 0.00 30.59 2.94
2541 6344 6.324601 ACATCCAAGAGATCAAGAAATCCT 57.675 37.500 0.00 0.00 30.59 3.24
2542 6345 7.504403 TCTACATCCAAGAGATCAAGAAATCC 58.496 38.462 0.00 0.00 30.59 3.01
2543 6346 8.420222 TCTCTACATCCAAGAGATCAAGAAATC 58.580 37.037 0.00 0.00 43.51 2.17
2544 6347 8.316497 TCTCTACATCCAAGAGATCAAGAAAT 57.684 34.615 0.00 0.00 43.51 2.17
2545 6348 7.724490 TCTCTACATCCAAGAGATCAAGAAA 57.276 36.000 0.00 0.00 43.51 2.52
2577 6380 9.928618 TCCATCAAGGAATGGTTGTAATAAATA 57.071 29.630 3.03 0.00 45.65 1.40
2578 6381 8.837099 TCCATCAAGGAATGGTTGTAATAAAT 57.163 30.769 3.03 0.00 45.65 1.40
2594 6397 6.769822 AGCTTATTCACAGTTATCCATCAAGG 59.230 38.462 0.00 0.00 39.47 3.61
2595 6398 7.798596 AGCTTATTCACAGTTATCCATCAAG 57.201 36.000 0.00 0.00 0.00 3.02
2596 6399 9.109393 GTAAGCTTATTCACAGTTATCCATCAA 57.891 33.333 9.88 0.00 0.00 2.57
2597 6400 8.264347 TGTAAGCTTATTCACAGTTATCCATCA 58.736 33.333 9.88 0.00 0.00 3.07
2598 6401 8.662781 TGTAAGCTTATTCACAGTTATCCATC 57.337 34.615 9.88 0.00 0.00 3.51
2599 6402 9.632638 ATTGTAAGCTTATTCACAGTTATCCAT 57.367 29.630 9.88 0.00 0.00 3.41
2606 6409 9.890629 TGATTCTATTGTAAGCTTATTCACAGT 57.109 29.630 9.88 4.96 0.00 3.55
2615 6418 9.559958 CGTTGAAATTGATTCTATTGTAAGCTT 57.440 29.630 3.48 3.48 38.92 3.74
2616 6419 8.730680 ACGTTGAAATTGATTCTATTGTAAGCT 58.269 29.630 0.00 0.00 38.92 3.74
2617 6420 8.788813 CACGTTGAAATTGATTCTATTGTAAGC 58.211 33.333 0.00 0.00 38.92 3.09
2618 6421 9.825972 ACACGTTGAAATTGATTCTATTGTAAG 57.174 29.630 0.00 0.00 38.92 2.34
2621 6424 7.955324 CGTACACGTTGAAATTGATTCTATTGT 59.045 33.333 0.00 0.00 35.35 2.71
2622 6425 8.298566 CGTACACGTTGAAATTGATTCTATTG 57.701 34.615 0.00 0.00 35.35 1.90
2639 6442 5.957716 AGCAACCAAGCATACGTACACGT 62.958 47.826 12.54 12.54 45.89 4.49
2640 6443 1.201877 GCAACCAAGCATACGTACACG 60.202 52.381 0.00 0.00 46.33 4.49
2641 6444 2.073816 AGCAACCAAGCATACGTACAC 58.926 47.619 0.00 0.00 36.85 2.90
2642 6445 2.343101 GAGCAACCAAGCATACGTACA 58.657 47.619 0.00 0.00 36.85 2.90
2643 6446 1.664151 GGAGCAACCAAGCATACGTAC 59.336 52.381 0.00 0.00 38.79 3.67
2644 6447 1.276705 TGGAGCAACCAAGCATACGTA 59.723 47.619 0.00 0.00 46.75 3.57
2645 6448 0.036164 TGGAGCAACCAAGCATACGT 59.964 50.000 0.00 0.00 46.75 3.57
2646 6449 2.853159 TGGAGCAACCAAGCATACG 58.147 52.632 0.11 0.00 46.75 3.06
2655 6458 3.906720 TTAGTAGATGGTGGAGCAACC 57.093 47.619 0.00 0.00 40.94 3.77
2656 6459 6.817184 TCTATTTAGTAGATGGTGGAGCAAC 58.183 40.000 0.00 0.00 34.50 4.17
2657 6460 6.839134 TCTCTATTTAGTAGATGGTGGAGCAA 59.161 38.462 0.00 0.00 38.71 3.91
2658 6461 6.373759 TCTCTATTTAGTAGATGGTGGAGCA 58.626 40.000 0.00 0.00 38.71 4.26
2659 6462 6.902771 TCTCTATTTAGTAGATGGTGGAGC 57.097 41.667 0.00 0.00 38.71 4.70
2666 6469 9.717942 CCCTTTTCCATCTCTATTTAGTAGATG 57.282 37.037 14.01 14.01 44.03 2.90
2667 6470 9.676129 TCCCTTTTCCATCTCTATTTAGTAGAT 57.324 33.333 0.00 0.00 38.71 1.98
2668 6471 9.148879 CTCCCTTTTCCATCTCTATTTAGTAGA 57.851 37.037 0.00 0.00 37.09 2.59
2669 6472 9.148879 TCTCCCTTTTCCATCTCTATTTAGTAG 57.851 37.037 0.00 0.00 0.00 2.57
2670 6473 9.148879 CTCTCCCTTTTCCATCTCTATTTAGTA 57.851 37.037 0.00 0.00 0.00 1.82
2671 6474 7.846823 TCTCTCCCTTTTCCATCTCTATTTAGT 59.153 37.037 0.00 0.00 0.00 2.24
2672 6475 8.256356 TCTCTCCCTTTTCCATCTCTATTTAG 57.744 38.462 0.00 0.00 0.00 1.85
2673 6476 8.068110 TCTCTCTCCCTTTTCCATCTCTATTTA 58.932 37.037 0.00 0.00 0.00 1.40
2674 6477 6.905776 TCTCTCTCCCTTTTCCATCTCTATTT 59.094 38.462 0.00 0.00 0.00 1.40
2675 6478 6.448202 TCTCTCTCCCTTTTCCATCTCTATT 58.552 40.000 0.00 0.00 0.00 1.73
2676 6479 6.036926 TCTCTCTCCCTTTTCCATCTCTAT 57.963 41.667 0.00 0.00 0.00 1.98
2677 6480 5.454062 CTCTCTCTCCCTTTTCCATCTCTA 58.546 45.833 0.00 0.00 0.00 2.43
2678 6481 4.289245 CTCTCTCTCCCTTTTCCATCTCT 58.711 47.826 0.00 0.00 0.00 3.10
2679 6482 3.181466 GCTCTCTCTCCCTTTTCCATCTC 60.181 52.174 0.00 0.00 0.00 2.75
2680 6483 2.771372 GCTCTCTCTCCCTTTTCCATCT 59.229 50.000 0.00 0.00 0.00 2.90
2681 6484 2.771372 AGCTCTCTCTCCCTTTTCCATC 59.229 50.000 0.00 0.00 0.00 3.51
2682 6485 2.844369 AGCTCTCTCTCCCTTTTCCAT 58.156 47.619 0.00 0.00 0.00 3.41
2683 6486 2.334006 AGCTCTCTCTCCCTTTTCCA 57.666 50.000 0.00 0.00 0.00 3.53
2684 6487 2.432874 GGTAGCTCTCTCTCCCTTTTCC 59.567 54.545 0.00 0.00 0.00 3.13
2685 6488 3.100671 TGGTAGCTCTCTCTCCCTTTTC 58.899 50.000 0.00 0.00 0.00 2.29
2686 6489 3.191888 TGGTAGCTCTCTCTCCCTTTT 57.808 47.619 0.00 0.00 0.00 2.27
2687 6490 2.930109 TGGTAGCTCTCTCTCCCTTT 57.070 50.000 0.00 0.00 0.00 3.11
2688 6491 3.413105 AATGGTAGCTCTCTCTCCCTT 57.587 47.619 0.00 0.00 0.00 3.95
2689 6492 3.724738 TCTAATGGTAGCTCTCTCTCCCT 59.275 47.826 0.00 0.00 0.00 4.20
2690 6493 4.107127 TCTAATGGTAGCTCTCTCTCCC 57.893 50.000 0.00 0.00 0.00 4.30
2691 6494 4.462483 CCATCTAATGGTAGCTCTCTCTCC 59.538 50.000 0.00 0.00 45.54 3.71
2692 6495 5.643379 CCATCTAATGGTAGCTCTCTCTC 57.357 47.826 0.00 0.00 45.54 3.20
2708 6511 9.967451 CTCTCTATCTTATACAGGTTCCATCTA 57.033 37.037 0.00 0.00 0.00 1.98
2709 6512 7.893302 CCTCTCTATCTTATACAGGTTCCATCT 59.107 40.741 0.00 0.00 0.00 2.90
2710 6513 7.123547 CCCTCTCTATCTTATACAGGTTCCATC 59.876 44.444 0.00 0.00 0.00 3.51
2711 6514 6.957020 CCCTCTCTATCTTATACAGGTTCCAT 59.043 42.308 0.00 0.00 0.00 3.41
2712 6515 6.104243 TCCCTCTCTATCTTATACAGGTTCCA 59.896 42.308 0.00 0.00 0.00 3.53
2713 6516 6.553857 TCCCTCTCTATCTTATACAGGTTCC 58.446 44.000 0.00 0.00 0.00 3.62
2714 6517 6.661805 CCTCCCTCTCTATCTTATACAGGTTC 59.338 46.154 0.00 0.00 0.00 3.62
2715 6518 6.469533 CCCTCCCTCTCTATCTTATACAGGTT 60.470 46.154 0.00 0.00 0.00 3.50
2716 6519 5.015817 CCCTCCCTCTCTATCTTATACAGGT 59.984 48.000 0.00 0.00 0.00 4.00
2717 6520 5.254267 TCCCTCCCTCTCTATCTTATACAGG 59.746 48.000 0.00 0.00 0.00 4.00
2718 6521 6.395780 TCCCTCCCTCTCTATCTTATACAG 57.604 45.833 0.00 0.00 0.00 2.74
2719 6522 5.254267 CCTCCCTCCCTCTCTATCTTATACA 59.746 48.000 0.00 0.00 0.00 2.29
2720 6523 5.493250 TCCTCCCTCCCTCTCTATCTTATAC 59.507 48.000 0.00 0.00 0.00 1.47
2721 6524 5.687727 TCCTCCCTCCCTCTCTATCTTATA 58.312 45.833 0.00 0.00 0.00 0.98
2722 6525 4.528354 TCCTCCCTCCCTCTCTATCTTAT 58.472 47.826 0.00 0.00 0.00 1.73
2723 6526 3.969185 TCCTCCCTCCCTCTCTATCTTA 58.031 50.000 0.00 0.00 0.00 2.10
2724 6527 2.808355 TCCTCCCTCCCTCTCTATCTT 58.192 52.381 0.00 0.00 0.00 2.40
2725 6528 2.542257 TCCTCCCTCCCTCTCTATCT 57.458 55.000 0.00 0.00 0.00 1.98
2726 6529 2.719705 TCTTCCTCCCTCCCTCTCTATC 59.280 54.545 0.00 0.00 0.00 2.08
2727 6530 2.808355 TCTTCCTCCCTCCCTCTCTAT 58.192 52.381 0.00 0.00 0.00 1.98
2728 6531 2.305345 TCTTCCTCCCTCCCTCTCTA 57.695 55.000 0.00 0.00 0.00 2.43
2729 6532 1.220236 CATCTTCCTCCCTCCCTCTCT 59.780 57.143 0.00 0.00 0.00 3.10
2730 6533 1.219213 TCATCTTCCTCCCTCCCTCTC 59.781 57.143 0.00 0.00 0.00 3.20
2731 6534 1.220236 CTCATCTTCCTCCCTCCCTCT 59.780 57.143 0.00 0.00 0.00 3.69
2732 6535 1.062505 ACTCATCTTCCTCCCTCCCTC 60.063 57.143 0.00 0.00 0.00 4.30
2733 6536 1.022903 ACTCATCTTCCTCCCTCCCT 58.977 55.000 0.00 0.00 0.00 4.20
2734 6537 1.127343 CACTCATCTTCCTCCCTCCC 58.873 60.000 0.00 0.00 0.00 4.30
2735 6538 1.127343 CCACTCATCTTCCTCCCTCC 58.873 60.000 0.00 0.00 0.00 4.30
2736 6539 1.127343 CCCACTCATCTTCCTCCCTC 58.873 60.000 0.00 0.00 0.00 4.30
2737 6540 0.719015 TCCCACTCATCTTCCTCCCT 59.281 55.000 0.00 0.00 0.00 4.20
2738 6541 1.127343 CTCCCACTCATCTTCCTCCC 58.873 60.000 0.00 0.00 0.00 4.30
2739 6542 0.467804 GCTCCCACTCATCTTCCTCC 59.532 60.000 0.00 0.00 0.00 4.30
2740 6543 1.198713 TGCTCCCACTCATCTTCCTC 58.801 55.000 0.00 0.00 0.00 3.71
2741 6544 1.280421 GTTGCTCCCACTCATCTTCCT 59.720 52.381 0.00 0.00 0.00 3.36
2742 6545 1.743996 GTTGCTCCCACTCATCTTCC 58.256 55.000 0.00 0.00 0.00 3.46
2743 6546 1.066858 TCGTTGCTCCCACTCATCTTC 60.067 52.381 0.00 0.00 0.00 2.87
2744 6547 0.976641 TCGTTGCTCCCACTCATCTT 59.023 50.000 0.00 0.00 0.00 2.40
2745 6548 0.976641 TTCGTTGCTCCCACTCATCT 59.023 50.000 0.00 0.00 0.00 2.90
2746 6549 1.363744 CTTCGTTGCTCCCACTCATC 58.636 55.000 0.00 0.00 0.00 2.92
2747 6550 0.674895 GCTTCGTTGCTCCCACTCAT 60.675 55.000 0.00 0.00 0.00 2.90
2748 6551 1.301716 GCTTCGTTGCTCCCACTCA 60.302 57.895 0.00 0.00 0.00 3.41
2749 6552 1.004440 AGCTTCGTTGCTCCCACTC 60.004 57.895 0.00 0.00 39.34 3.51
2750 6553 1.302033 CAGCTTCGTTGCTCCCACT 60.302 57.895 2.25 0.00 41.98 4.00
2751 6554 1.294659 CTCAGCTTCGTTGCTCCCAC 61.295 60.000 2.25 0.00 41.98 4.61
2752 6555 1.004560 CTCAGCTTCGTTGCTCCCA 60.005 57.895 2.25 0.00 41.98 4.37
2753 6556 0.246635 TACTCAGCTTCGTTGCTCCC 59.753 55.000 2.25 0.00 41.98 4.30
2754 6557 2.301577 ATACTCAGCTTCGTTGCTCC 57.698 50.000 2.25 0.00 41.98 4.70
2755 6558 3.117046 GGTATACTCAGCTTCGTTGCTC 58.883 50.000 2.25 0.00 41.98 4.26
2756 6559 2.159085 GGGTATACTCAGCTTCGTTGCT 60.159 50.000 2.25 0.00 45.18 3.91
2757 6560 2.202566 GGGTATACTCAGCTTCGTTGC 58.797 52.381 2.25 0.00 0.00 4.17
2758 6561 3.187700 GTGGGTATACTCAGCTTCGTTG 58.812 50.000 5.44 0.00 0.00 4.10
2759 6562 2.167900 GGTGGGTATACTCAGCTTCGTT 59.832 50.000 24.49 0.00 0.00 3.85
2760 6563 1.755380 GGTGGGTATACTCAGCTTCGT 59.245 52.381 24.49 0.00 0.00 3.85
2761 6564 2.032620 AGGTGGGTATACTCAGCTTCG 58.967 52.381 27.88 0.00 38.39 3.79
2762 6565 2.483889 GCAGGTGGGTATACTCAGCTTC 60.484 54.545 30.30 23.59 39.36 3.86
2763 6566 1.486726 GCAGGTGGGTATACTCAGCTT 59.513 52.381 30.30 15.74 39.36 3.74
2764 6567 1.123928 GCAGGTGGGTATACTCAGCT 58.876 55.000 27.88 27.88 41.67 4.24
2765 6568 1.123928 AGCAGGTGGGTATACTCAGC 58.876 55.000 24.41 24.41 0.00 4.26
2766 6569 1.202580 GCAGCAGGTGGGTATACTCAG 60.203 57.143 5.44 0.00 0.00 3.35
2767 6570 0.830648 GCAGCAGGTGGGTATACTCA 59.169 55.000 0.00 0.00 0.00 3.41
2768 6571 0.830648 TGCAGCAGGTGGGTATACTC 59.169 55.000 2.25 0.00 0.00 2.59
2769 6572 0.541863 GTGCAGCAGGTGGGTATACT 59.458 55.000 0.00 0.00 0.00 2.12
2770 6573 0.810031 CGTGCAGCAGGTGGGTATAC 60.810 60.000 6.95 0.00 0.00 1.47
2771 6574 1.261938 ACGTGCAGCAGGTGGGTATA 61.262 55.000 19.82 0.00 31.07 1.47
2772 6575 2.268920 CGTGCAGCAGGTGGGTAT 59.731 61.111 6.95 0.00 0.00 2.73
2773 6576 3.238497 ACGTGCAGCAGGTGGGTA 61.238 61.111 19.82 0.00 31.07 3.69
2774 6577 4.935495 CACGTGCAGCAGGTGGGT 62.935 66.667 31.96 8.43 43.64 4.51
2777 6580 2.029288 CTACCACGTGCAGCAGGTG 61.029 63.158 32.42 32.42 45.90 4.00
2778 6581 2.207229 TCTACCACGTGCAGCAGGT 61.207 57.895 15.10 15.10 38.14 4.00
2779 6582 1.738099 GTCTACCACGTGCAGCAGG 60.738 63.158 10.91 13.64 0.00 4.85
2780 6583 1.010935 CAGTCTACCACGTGCAGCAG 61.011 60.000 10.91 3.87 0.00 4.24
2781 6584 1.006220 CAGTCTACCACGTGCAGCA 60.006 57.895 10.91 0.00 0.00 4.41
2782 6585 0.319555 TTCAGTCTACCACGTGCAGC 60.320 55.000 10.91 5.97 0.00 5.25
2783 6586 2.061773 CTTTCAGTCTACCACGTGCAG 58.938 52.381 10.91 9.54 0.00 4.41
2784 6587 1.270094 CCTTTCAGTCTACCACGTGCA 60.270 52.381 10.91 0.00 0.00 4.57
2785 6588 1.000506 TCCTTTCAGTCTACCACGTGC 59.999 52.381 10.91 0.00 0.00 5.34
2786 6589 2.352814 CCTCCTTTCAGTCTACCACGTG 60.353 54.545 9.08 9.08 0.00 4.49
2787 6590 1.893801 CCTCCTTTCAGTCTACCACGT 59.106 52.381 0.00 0.00 0.00 4.49
2788 6591 1.204941 CCCTCCTTTCAGTCTACCACG 59.795 57.143 0.00 0.00 0.00 4.94
2789 6592 1.555533 CCCCTCCTTTCAGTCTACCAC 59.444 57.143 0.00 0.00 0.00 4.16
2790 6593 1.554822 CCCCCTCCTTTCAGTCTACCA 60.555 57.143 0.00 0.00 0.00 3.25
2791 6594 1.205055 CCCCCTCCTTTCAGTCTACC 58.795 60.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.