Multiple sequence alignment - TraesCS2D01G504500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G504500 chr2D 100.000 4754 0 0 1 4754 598813100 598817853 0.000000e+00 8780.0
1 TraesCS2D01G504500 chr2D 89.855 69 6 1 4422 4489 598863220 598863288 2.360000e-13 87.9
2 TraesCS2D01G504500 chr2D 78.571 140 24 4 4267 4404 598889010 598889145 2.360000e-13 87.9
3 TraesCS2D01G504500 chr2B 97.025 3798 100 6 1 3798 727685069 727688853 0.000000e+00 6375.0
4 TraesCS2D01G504500 chr2B 90.996 833 44 21 3933 4754 727688851 727689663 0.000000e+00 1094.0
5 TraesCS2D01G504500 chr2B 94.479 634 30 3 3933 4566 727712402 727713030 0.000000e+00 972.0
6 TraesCS2D01G504500 chr2B 98.333 60 1 0 4695 4754 727713462 727713521 6.510000e-19 106.0
7 TraesCS2D01G504500 chr2B 79.231 130 14 8 4422 4546 727703334 727703455 1.420000e-10 78.7
8 TraesCS2D01G504500 chr2A 94.757 3605 140 15 255 3844 733087083 733090653 0.000000e+00 5565.0
9 TraesCS2D01G504500 chr2A 96.429 196 7 0 1 196 733086890 733087085 1.650000e-84 324.0
10 TraesCS2D01G504500 chr2A 86.957 161 8 6 4599 4747 733091624 733091783 8.180000e-38 169.0
11 TraesCS2D01G504500 chr2A 92.857 42 2 1 4422 4462 733129088 733129129 5.140000e-05 60.2
12 TraesCS2D01G504500 chr7D 86.333 2861 382 8 907 3762 89533111 89530255 0.000000e+00 3109.0
13 TraesCS2D01G504500 chr7D 85.240 2954 417 15 894 3837 555196475 555193531 0.000000e+00 3022.0
14 TraesCS2D01G504500 chr7D 85.931 2829 389 8 957 3780 20404284 20407108 0.000000e+00 3011.0
15 TraesCS2D01G504500 chr7D 85.586 2886 400 12 903 3781 20947073 20949949 0.000000e+00 3011.0
16 TraesCS2D01G504500 chr7D 85.434 2856 403 9 905 3756 20460350 20463196 0.000000e+00 2957.0
17 TraesCS2D01G504500 chr7A 85.511 2878 404 12 911 3781 20659584 20662455 0.000000e+00 2992.0
18 TraesCS2D01G504500 chr7A 80.448 3483 554 78 351 3781 20600416 20603823 0.000000e+00 2542.0
19 TraesCS2D01G504500 chr7A 76.903 381 64 16 131 505 20727207 20727569 1.350000e-45 195.0
20 TraesCS2D01G504500 chr7A 79.167 288 48 10 543 827 20454652 20454930 6.280000e-44 189.0
21 TraesCS2D01G504500 chr7A 74.603 189 40 8 526 708 20676077 20676263 5.100000e-10 76.8
22 TraesCS2D01G504500 chr7A 80.000 115 13 10 337 442 20977821 20977934 5.100000e-10 76.8
23 TraesCS2D01G504500 chr7B 85.176 2894 416 12 894 3781 601114383 601117269 0.000000e+00 2955.0
24 TraesCS2D01G504500 chr7B 81.944 144 21 4 355 496 601113087 601113227 3.010000e-22 117.0
25 TraesCS2D01G504500 chr3A 93.327 1004 50 7 3 997 308689315 308690310 0.000000e+00 1467.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G504500 chr2D 598813100 598817853 4753 False 8780.000000 8780 100.000000 1 4754 1 chr2D.!!$F1 4753
1 TraesCS2D01G504500 chr2B 727685069 727689663 4594 False 3734.500000 6375 94.010500 1 4754 2 chr2B.!!$F2 4753
2 TraesCS2D01G504500 chr2B 727712402 727713521 1119 False 539.000000 972 96.406000 3933 4754 2 chr2B.!!$F3 821
3 TraesCS2D01G504500 chr2A 733086890 733091783 4893 False 2019.333333 5565 92.714333 1 4747 3 chr2A.!!$F2 4746
4 TraesCS2D01G504500 chr7D 89530255 89533111 2856 True 3109.000000 3109 86.333000 907 3762 1 chr7D.!!$R1 2855
5 TraesCS2D01G504500 chr7D 555193531 555196475 2944 True 3022.000000 3022 85.240000 894 3837 1 chr7D.!!$R2 2943
6 TraesCS2D01G504500 chr7D 20404284 20407108 2824 False 3011.000000 3011 85.931000 957 3780 1 chr7D.!!$F1 2823
7 TraesCS2D01G504500 chr7D 20947073 20949949 2876 False 3011.000000 3011 85.586000 903 3781 1 chr7D.!!$F3 2878
8 TraesCS2D01G504500 chr7D 20460350 20463196 2846 False 2957.000000 2957 85.434000 905 3756 1 chr7D.!!$F2 2851
9 TraesCS2D01G504500 chr7A 20659584 20662455 2871 False 2992.000000 2992 85.511000 911 3781 1 chr7A.!!$F3 2870
10 TraesCS2D01G504500 chr7A 20600416 20603823 3407 False 2542.000000 2542 80.448000 351 3781 1 chr7A.!!$F2 3430
11 TraesCS2D01G504500 chr7B 601113087 601117269 4182 False 1536.000000 2955 83.560000 355 3781 2 chr7B.!!$F1 3426
12 TraesCS2D01G504500 chr3A 308689315 308690310 995 False 1467.000000 1467 93.327000 3 997 1 chr3A.!!$F1 994

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
720 1508 1.293179 CTCATGGACCTGCACGTCA 59.707 57.895 16.19 4.76 34.24 4.35 F
1299 2132 2.869801 TCTTGTTGGTCACGAACATGAC 59.130 45.455 14.76 0.00 46.95 3.06 F
3081 3921 0.306533 ACCTGCAAACGTTACAAGCG 59.693 50.000 0.00 1.34 0.00 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 2781 0.534203 TCGCCTTCCCTTGTTGTGAC 60.534 55.000 0.0 0.0 0.0 3.67 R
3121 3961 2.039480 TCAAGCTTCTCAGTTGCCTCAT 59.961 45.455 0.0 0.0 0.0 2.90 R
4653 5791 0.391661 ACATGCCACTCCAGCTTACG 60.392 55.000 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 3.026694 CCATCCCTGATTGTTTCCCTTC 58.973 50.000 0.00 0.00 0.00 3.46
96 97 5.662657 CCCTGATTGTTTCCCTTCCATTAAT 59.337 40.000 0.00 0.00 0.00 1.40
225 226 6.180472 TGTGGAAATTTCTAGCCTCCTAAAG 58.820 40.000 17.42 0.00 0.00 1.85
271 272 3.324846 TCTCCTAAAGTGCACATGACAGT 59.675 43.478 21.04 0.00 0.00 3.55
720 1508 1.293179 CTCATGGACCTGCACGTCA 59.707 57.895 16.19 4.76 34.24 4.35
816 1612 7.569599 AGGAGGATTACTTTGAAAGGTTCTA 57.430 36.000 10.02 0.00 0.00 2.10
851 1647 6.357198 CACAGCAAGTGTTTTATTTCATTGC 58.643 36.000 0.00 0.00 43.40 3.56
877 1673 5.560966 TGGAGAGTTTTGAAGTGTTTCAC 57.439 39.130 0.00 0.00 42.79 3.18
878 1674 4.398044 TGGAGAGTTTTGAAGTGTTTCACC 59.602 41.667 0.00 0.00 42.79 4.02
1003 1835 7.226325 ACATTAGCTATTCTCAGAAAGTGATGC 59.774 37.037 0.00 0.00 33.51 3.91
1299 2132 2.869801 TCTTGTTGGTCACGAACATGAC 59.130 45.455 14.76 0.00 46.95 3.06
1369 2202 4.647611 TCTGCTTTCTTTGAACCGGATTA 58.352 39.130 9.46 0.00 0.00 1.75
1390 2223 9.190317 GGATTACTTTCAAGGTGAAGGAAATAT 57.810 33.333 7.06 0.00 37.70 1.28
2814 3654 7.393216 AGAATATTCCAGATGCTATTGGAGAC 58.607 38.462 11.92 0.00 43.89 3.36
2892 3732 6.515272 AGTTCTGTTGAGAAGCTTTCAAAA 57.485 33.333 19.06 15.18 38.95 2.44
2898 3738 8.465999 TCTGTTGAGAAGCTTTCAAAATTGTTA 58.534 29.630 19.06 5.43 36.41 2.41
2952 3792 2.636830 CTGCCTAGTGGGATTGTGAAG 58.363 52.381 0.00 0.00 37.23 3.02
3081 3921 0.306533 ACCTGCAAACGTTACAAGCG 59.693 50.000 0.00 1.34 0.00 4.68
3800 4649 1.704641 ATGCACTCGGAGGTATAGCA 58.295 50.000 10.23 11.05 34.78 3.49
3844 4697 0.608640 GCTTCCTCCCTCGTCTCAAA 59.391 55.000 0.00 0.00 0.00 2.69
3858 4726 5.930405 TCGTCTCAAATTGTTGATGTGATG 58.070 37.500 0.00 0.00 42.85 3.07
3859 4727 5.469760 TCGTCTCAAATTGTTGATGTGATGT 59.530 36.000 0.00 0.00 42.85 3.06
3860 4728 6.648725 TCGTCTCAAATTGTTGATGTGATGTA 59.351 34.615 0.00 0.00 42.85 2.29
3872 4740 8.242739 TGTTGATGTGATGTAATGTTGGTTATG 58.757 33.333 0.00 0.00 0.00 1.90
3873 4741 7.936496 TGATGTGATGTAATGTTGGTTATGT 57.064 32.000 0.00 0.00 0.00 2.29
3877 4745 7.398829 TGTGATGTAATGTTGGTTATGTAGGT 58.601 34.615 0.00 0.00 0.00 3.08
3878 4746 7.551262 TGTGATGTAATGTTGGTTATGTAGGTC 59.449 37.037 0.00 0.00 0.00 3.85
3879 4747 7.769044 GTGATGTAATGTTGGTTATGTAGGTCT 59.231 37.037 0.00 0.00 0.00 3.85
3880 4748 8.325787 TGATGTAATGTTGGTTATGTAGGTCTT 58.674 33.333 0.00 0.00 0.00 3.01
3881 4749 8.732746 ATGTAATGTTGGTTATGTAGGTCTTC 57.267 34.615 0.00 0.00 0.00 2.87
3882 4750 6.814644 TGTAATGTTGGTTATGTAGGTCTTCG 59.185 38.462 0.00 0.00 0.00 3.79
3883 4751 4.877378 TGTTGGTTATGTAGGTCTTCGT 57.123 40.909 0.00 0.00 0.00 3.85
3884 4752 4.813027 TGTTGGTTATGTAGGTCTTCGTC 58.187 43.478 0.00 0.00 0.00 4.20
3885 4753 4.525487 TGTTGGTTATGTAGGTCTTCGTCT 59.475 41.667 0.00 0.00 0.00 4.18
3899 4767 2.949451 TCGTCTGAAGGAAGATGCTC 57.051 50.000 0.00 0.00 33.87 4.26
3902 4770 2.094286 CGTCTGAAGGAAGATGCTCTGT 60.094 50.000 0.00 0.00 0.00 3.41
3904 4772 4.429108 GTCTGAAGGAAGATGCTCTGTAC 58.571 47.826 0.00 0.00 0.00 2.90
3905 4773 3.129462 TCTGAAGGAAGATGCTCTGTACG 59.871 47.826 0.00 0.00 0.00 3.67
3907 4775 2.949451 AGGAAGATGCTCTGTACGTG 57.051 50.000 0.00 0.00 0.00 4.49
3908 4776 1.134965 AGGAAGATGCTCTGTACGTGC 60.135 52.381 0.00 0.00 0.00 5.34
3909 4777 1.134965 GGAAGATGCTCTGTACGTGCT 60.135 52.381 4.97 0.00 33.42 4.40
3911 4779 0.459237 AGATGCTCTGTACGTGCTGC 60.459 55.000 4.97 7.46 33.42 5.25
3912 4780 0.459237 GATGCTCTGTACGTGCTGCT 60.459 55.000 4.97 0.00 33.42 4.24
3913 4781 0.738762 ATGCTCTGTACGTGCTGCTG 60.739 55.000 4.97 2.56 33.42 4.41
3914 4782 2.097038 GCTCTGTACGTGCTGCTGG 61.097 63.158 4.97 0.00 0.00 4.85
3915 4783 2.048222 TCTGTACGTGCTGCTGGC 60.048 61.111 4.97 0.00 42.22 4.85
3961 4982 2.602217 CGGGTTTCTCTGCTTTTTGACG 60.602 50.000 0.00 0.00 0.00 4.35
4091 5134 5.353394 TGTGATGGTATTTCCTACTGACC 57.647 43.478 0.00 0.00 37.07 4.02
4224 5270 5.008613 GTGCTTGTTGTGAACCTATTTCAGA 59.991 40.000 0.00 0.00 45.23 3.27
4295 5341 5.428496 TGCTCAGACACTCATTTTTCTTG 57.572 39.130 0.00 0.00 0.00 3.02
4338 5384 4.766891 TCTGTTTTATTGCTAGCCTTGCTT 59.233 37.500 13.29 0.00 40.44 3.91
4349 5395 1.480545 AGCCTTGCTTTGTTCCGTTTT 59.519 42.857 0.00 0.00 33.89 2.43
4350 5396 2.691011 AGCCTTGCTTTGTTCCGTTTTA 59.309 40.909 0.00 0.00 33.89 1.52
4354 5400 5.047188 CCTTGCTTTGTTCCGTTTTATGTT 58.953 37.500 0.00 0.00 0.00 2.71
4472 5518 5.435686 TGGAAGGCTACATCATGTTTACT 57.564 39.130 0.00 0.00 0.00 2.24
4507 5553 4.630894 TTTCAAAATTCGCTGACACACT 57.369 36.364 0.00 0.00 0.00 3.55
4566 5612 0.250513 AGTTCTTCAGGGACCGATGC 59.749 55.000 0.00 0.00 0.00 3.91
4568 5614 1.198094 TTCTTCAGGGACCGATGCCA 61.198 55.000 0.00 0.00 39.29 4.92
4569 5615 1.153289 CTTCAGGGACCGATGCCAG 60.153 63.158 0.00 0.00 39.29 4.85
4570 5616 2.599645 CTTCAGGGACCGATGCCAGG 62.600 65.000 0.00 0.00 39.29 4.45
4571 5617 4.181010 CAGGGACCGATGCCAGGG 62.181 72.222 0.00 0.00 39.29 4.45
4572 5618 4.414956 AGGGACCGATGCCAGGGA 62.415 66.667 0.00 0.00 39.29 4.20
4573 5619 3.407967 GGGACCGATGCCAGGGAA 61.408 66.667 0.00 0.00 36.03 3.97
4574 5620 2.757124 GGGACCGATGCCAGGGAAT 61.757 63.158 0.00 0.00 36.03 3.01
4575 5621 1.227383 GGACCGATGCCAGGGAATT 59.773 57.895 0.00 0.00 0.00 2.17
4576 5622 0.472471 GGACCGATGCCAGGGAATTA 59.528 55.000 0.00 0.00 0.00 1.40
4578 5624 1.947456 GACCGATGCCAGGGAATTAAC 59.053 52.381 0.00 0.00 0.00 2.01
4581 5627 2.421388 CCGATGCCAGGGAATTAACTCA 60.421 50.000 0.00 0.00 0.00 3.41
4583 5629 3.432186 CGATGCCAGGGAATTAACTCAGA 60.432 47.826 0.00 0.00 0.00 3.27
4584 5630 4.526970 GATGCCAGGGAATTAACTCAGAA 58.473 43.478 0.00 0.00 0.00 3.02
4586 5632 4.934356 TGCCAGGGAATTAACTCAGAAAT 58.066 39.130 0.00 0.00 0.00 2.17
4587 5633 5.332743 TGCCAGGGAATTAACTCAGAAATT 58.667 37.500 0.00 0.00 0.00 1.82
4588 5634 5.185635 TGCCAGGGAATTAACTCAGAAATTG 59.814 40.000 0.00 0.00 0.00 2.32
4589 5635 5.654497 CCAGGGAATTAACTCAGAAATTGC 58.346 41.667 1.82 1.82 33.96 3.56
4590 5636 5.335127 CAGGGAATTAACTCAGAAATTGCG 58.665 41.667 3.84 0.00 35.11 4.85
4591 5637 5.010282 AGGGAATTAACTCAGAAATTGCGT 58.990 37.500 3.84 2.22 35.11 5.24
4592 5638 5.095490 GGGAATTAACTCAGAAATTGCGTG 58.905 41.667 3.84 0.00 35.11 5.34
4593 5639 5.335661 GGGAATTAACTCAGAAATTGCGTGT 60.336 40.000 3.84 0.00 35.11 4.49
4594 5640 6.128117 GGGAATTAACTCAGAAATTGCGTGTA 60.128 38.462 3.84 0.00 35.11 2.90
4595 5641 6.961554 GGAATTAACTCAGAAATTGCGTGTAG 59.038 38.462 0.00 0.00 0.00 2.74
4597 5643 8.542497 AATTAACTCAGAAATTGCGTGTAGTA 57.458 30.769 0.00 0.00 0.00 1.82
4599 5645 6.648725 AACTCAGAAATTGCGTGTAGTATC 57.351 37.500 0.00 0.00 0.00 2.24
4601 5647 5.577164 ACTCAGAAATTGCGTGTAGTATCAC 59.423 40.000 0.00 0.00 35.28 3.06
4604 5650 6.425417 TCAGAAATTGCGTGTAGTATCACAAA 59.575 34.615 0.00 0.00 38.12 2.83
4605 5651 6.519761 CAGAAATTGCGTGTAGTATCACAAAC 59.480 38.462 0.00 0.00 38.12 2.93
4606 5652 4.939509 ATTGCGTGTAGTATCACAAACC 57.060 40.909 0.00 0.00 38.12 3.27
4653 5791 6.868622 ACTTCCGACATGAGATATATTAGGC 58.131 40.000 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 6.457392 GCTGCAGATCGATTCAAGACATTTTA 60.457 38.462 20.43 0.00 0.00 1.52
185 186 7.948278 ATTTCCACATTAGCGTATCTAGAAC 57.052 36.000 0.00 0.00 0.00 3.01
225 226 4.083110 CCCTCACACATCAAGAATGTTGAC 60.083 45.833 0.00 0.00 46.73 3.18
247 248 3.003480 GTCATGTGCACTTTAGGAGACC 58.997 50.000 19.41 0.00 0.00 3.85
755 1543 7.423199 TCATACAGTTAACCTATCTAACGCTG 58.577 38.462 0.88 0.00 34.96 5.18
816 1612 4.644685 AACACTTGCTGTGGTGAAATAAGT 59.355 37.500 13.33 0.00 46.28 2.24
851 1647 2.943033 ACACTTCAAAACTCTCCAACCG 59.057 45.455 0.00 0.00 0.00 4.44
877 1673 3.059352 AGTTAGTAGCAAGCACTTGGG 57.941 47.619 12.09 0.00 40.74 4.12
878 1674 5.447818 GCATTAGTTAGTAGCAAGCACTTGG 60.448 44.000 12.09 0.00 40.74 3.61
1003 1835 4.054671 GCTAGAAGAATCACAATCTCCGG 58.945 47.826 0.00 0.00 0.00 5.14
1299 2132 2.095263 CAGGTAAAAGCAACATCCCGTG 60.095 50.000 0.00 0.00 0.00 4.94
1369 2202 6.472887 TCGATATTTCCTTCACCTTGAAAGT 58.527 36.000 0.00 0.00 35.73 2.66
1390 2223 2.696707 ACAGGTGTGTTAGGTCTTTCGA 59.303 45.455 0.00 0.00 30.30 3.71
1391 2224 3.057734 GACAGGTGTGTTAGGTCTTTCG 58.942 50.000 0.00 0.00 36.88 3.46
1942 2781 0.534203 TCGCCTTCCCTTGTTGTGAC 60.534 55.000 0.00 0.00 0.00 3.67
2446 3285 8.261492 AGTTCTAGCATGTTTCTGTCAATTAG 57.739 34.615 0.00 0.00 0.00 1.73
2814 3654 4.432712 CCAAATGGCGGAGATTAAAAAGG 58.567 43.478 0.00 0.00 0.00 3.11
2892 3732 7.074653 TCTAAGAAGGTCCAGTGTTAACAAT 57.925 36.000 10.51 6.24 0.00 2.71
2898 3738 5.087323 TCAGATCTAAGAAGGTCCAGTGTT 58.913 41.667 0.00 0.00 32.80 3.32
3081 3921 3.866651 AGACTCATCATGTGCTACCAAC 58.133 45.455 0.00 0.00 0.00 3.77
3121 3961 2.039480 TCAAGCTTCTCAGTTGCCTCAT 59.961 45.455 0.00 0.00 0.00 2.90
3756 4600 1.178534 ATTTCCCAACCAGTGTGGCG 61.179 55.000 0.00 0.00 42.67 5.69
3800 4649 5.578073 AGTAGTGGTACTAGTTAGCAGGTT 58.422 41.667 0.00 0.00 38.89 3.50
3844 4697 7.230849 ACCAACATTACATCACATCAACAAT 57.769 32.000 0.00 0.00 0.00 2.71
3858 4726 6.815142 ACGAAGACCTACATAACCAACATTAC 59.185 38.462 0.00 0.00 0.00 1.89
3859 4727 6.938507 ACGAAGACCTACATAACCAACATTA 58.061 36.000 0.00 0.00 0.00 1.90
3860 4728 5.801380 ACGAAGACCTACATAACCAACATT 58.199 37.500 0.00 0.00 0.00 2.71
3879 4747 3.238108 GAGCATCTTCCTTCAGACGAA 57.762 47.619 0.00 0.00 0.00 3.85
3880 4748 2.949451 GAGCATCTTCCTTCAGACGA 57.051 50.000 0.00 0.00 0.00 4.20
3899 4767 3.121030 GGCCAGCAGCACGTACAG 61.121 66.667 0.00 0.00 46.50 2.74
3923 4827 1.299541 CCGGACAGTATGCACATTCC 58.700 55.000 0.00 0.00 42.53 3.01
3928 4832 1.084289 GAAACCCGGACAGTATGCAC 58.916 55.000 0.73 0.00 42.53 4.57
3930 4834 1.207329 AGAGAAACCCGGACAGTATGC 59.793 52.381 0.73 0.00 42.53 3.14
3961 4982 2.163010 AGCAGCAAATGATGTGCAGTAC 59.837 45.455 10.66 0.00 44.74 2.73
4017 5060 3.834610 ACAGTAGTAGCAGTAGCAAACG 58.165 45.455 0.00 0.00 45.49 3.60
4103 5146 4.376413 CGCTTGCAGTCTTATAATAAGCCG 60.376 45.833 0.00 0.00 36.59 5.52
4245 5291 7.500141 ACTTATGAATCACAAGCCAAGTTTTT 58.500 30.769 0.54 0.00 0.00 1.94
4295 5341 3.947834 AGACAGGCAGCAACCATAATTAC 59.052 43.478 0.00 0.00 0.00 1.89
4472 5518 9.187455 GCGAATTTTGAAAACTTAAGGACATAA 57.813 29.630 7.53 3.78 0.00 1.90
4507 5553 1.194781 GGTTGCCTCCTCACTCCTCA 61.195 60.000 0.00 0.00 0.00 3.86
4552 5598 2.669133 CCTGGCATCGGTCCCTGAA 61.669 63.158 0.00 0.00 0.00 3.02
4566 5612 5.654497 GCAATTTCTGAGTTAATTCCCTGG 58.346 41.667 0.00 0.00 0.00 4.45
4568 5614 5.010282 ACGCAATTTCTGAGTTAATTCCCT 58.990 37.500 0.00 0.00 33.82 4.20
4569 5615 5.095490 CACGCAATTTCTGAGTTAATTCCC 58.905 41.667 0.00 0.00 35.66 3.97
4570 5616 5.699839 ACACGCAATTTCTGAGTTAATTCC 58.300 37.500 0.00 0.00 35.66 3.01
4571 5617 7.519002 ACTACACGCAATTTCTGAGTTAATTC 58.481 34.615 0.00 0.00 35.66 2.17
4572 5618 7.435068 ACTACACGCAATTTCTGAGTTAATT 57.565 32.000 0.00 0.00 35.66 1.40
4573 5619 8.718102 ATACTACACGCAATTTCTGAGTTAAT 57.282 30.769 0.00 0.00 35.66 1.40
4574 5620 7.815549 TGATACTACACGCAATTTCTGAGTTAA 59.184 33.333 0.00 0.00 35.66 2.01
4575 5621 7.274904 GTGATACTACACGCAATTTCTGAGTTA 59.725 37.037 0.00 0.00 35.66 2.24
4576 5622 6.090898 GTGATACTACACGCAATTTCTGAGTT 59.909 38.462 0.00 0.00 35.66 3.01
4578 5624 5.576774 TGTGATACTACACGCAATTTCTGAG 59.423 40.000 0.00 0.00 42.86 3.35
4581 5627 6.348213 GGTTTGTGATACTACACGCAATTTCT 60.348 38.462 0.00 0.00 42.86 2.52
4583 5629 5.335348 GGGTTTGTGATACTACACGCAATTT 60.335 40.000 0.00 0.00 42.86 1.82
4584 5630 4.155280 GGGTTTGTGATACTACACGCAATT 59.845 41.667 0.00 0.00 42.86 2.32
4586 5632 3.068560 GGGTTTGTGATACTACACGCAA 58.931 45.455 0.00 0.00 42.86 4.85
4587 5633 2.300723 AGGGTTTGTGATACTACACGCA 59.699 45.455 0.00 0.00 42.86 5.24
4588 5634 2.968675 AGGGTTTGTGATACTACACGC 58.031 47.619 0.00 0.00 42.86 5.34
4589 5635 3.930848 GGAAGGGTTTGTGATACTACACG 59.069 47.826 0.00 0.00 42.86 4.49
4590 5636 4.259356 GGGAAGGGTTTGTGATACTACAC 58.741 47.826 0.00 0.00 40.68 2.90
4591 5637 3.264964 GGGGAAGGGTTTGTGATACTACA 59.735 47.826 0.00 0.00 0.00 2.74
4592 5638 3.264964 TGGGGAAGGGTTTGTGATACTAC 59.735 47.826 0.00 0.00 0.00 2.73
4593 5639 3.533146 TGGGGAAGGGTTTGTGATACTA 58.467 45.455 0.00 0.00 0.00 1.82
4594 5640 2.354328 TGGGGAAGGGTTTGTGATACT 58.646 47.619 0.00 0.00 0.00 2.12
4595 5641 2.891191 TGGGGAAGGGTTTGTGATAC 57.109 50.000 0.00 0.00 0.00 2.24
4597 5643 2.785357 TTTGGGGAAGGGTTTGTGAT 57.215 45.000 0.00 0.00 0.00 3.06
4599 5645 2.393646 TCTTTTGGGGAAGGGTTTGTG 58.606 47.619 0.00 0.00 0.00 3.33
4601 5647 4.705110 ATTTCTTTTGGGGAAGGGTTTG 57.295 40.909 0.00 0.00 0.00 2.93
4604 5650 3.774766 GCATATTTCTTTTGGGGAAGGGT 59.225 43.478 0.00 0.00 0.00 4.34
4605 5651 3.774216 TGCATATTTCTTTTGGGGAAGGG 59.226 43.478 0.00 0.00 0.00 3.95
4606 5652 4.711355 TCTGCATATTTCTTTTGGGGAAGG 59.289 41.667 0.00 0.00 0.00 3.46
4653 5791 0.391661 ACATGCCACTCCAGCTTACG 60.392 55.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.