Multiple sequence alignment - TraesCS2D01G504000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G504000 chr2D 100.000 7987 0 0 1 7987 598721234 598713248 0.000000e+00 14750.0
1 TraesCS2D01G504000 chr2D 96.037 328 9 1 2379 2706 256674430 256674107 1.530000e-146 531.0
2 TraesCS2D01G504000 chr2B 96.211 2745 83 9 2839 5570 726552132 726549396 0.000000e+00 4473.0
3 TraesCS2D01G504000 chr2B 93.078 2528 96 31 360 2842 726554701 726552208 0.000000e+00 3626.0
4 TraesCS2D01G504000 chr2B 92.870 1697 58 31 6302 7987 726547996 726546352 0.000000e+00 2405.0
5 TraesCS2D01G504000 chr2B 94.939 494 24 1 5808 6300 726548534 726548041 0.000000e+00 773.0
6 TraesCS2D01G504000 chr2B 96.330 109 4 0 5686 5794 726549019 726548911 6.370000e-41 180.0
7 TraesCS2D01G504000 chr2A 93.911 2562 120 24 3090 5631 732586737 732584192 0.000000e+00 3834.0
8 TraesCS2D01G504000 chr2A 91.942 2209 113 34 5810 7987 732583047 732580873 0.000000e+00 3033.0
9 TraesCS2D01G504000 chr2A 91.289 1458 61 18 362 1773 732589049 732587612 0.000000e+00 1929.0
10 TraesCS2D01G504000 chr2A 93.642 346 22 0 2362 2707 633948842 633949187 1.190000e-142 518.0
11 TraesCS2D01G504000 chr2A 85.574 305 26 10 2065 2368 732587394 732587107 3.620000e-78 303.0
12 TraesCS2D01G504000 chr2A 94.624 93 5 0 2932 3024 732586822 732586730 2.320000e-30 145.0
13 TraesCS2D01G504000 chr2A 100.000 37 0 0 5686 5722 732583527 732583491 1.440000e-07 69.4
14 TraesCS2D01G504000 chr7B 95.640 344 12 3 2367 2707 330538499 330538842 4.210000e-152 549.0
15 TraesCS2D01G504000 chr7B 94.412 340 19 0 2368 2707 92559094 92558755 2.550000e-144 523.0
16 TraesCS2D01G504000 chr7B 91.469 211 18 0 9 219 51917420 51917210 2.820000e-74 291.0
17 TraesCS2D01G504000 chr6B 95.044 343 14 3 2367 2706 558517497 558517155 3.280000e-148 536.0
18 TraesCS2D01G504000 chr6B 94.737 342 14 3 2368 2706 485115424 485115764 5.490000e-146 529.0
19 TraesCS2D01G504000 chr1A 93.629 361 18 3 2368 2727 313906529 313906885 1.180000e-147 534.0
20 TraesCS2D01G504000 chr1A 96.364 55 2 0 6809 6863 569419322 569419376 3.070000e-14 91.6
21 TraesCS2D01G504000 chr3B 92.308 364 23 4 2361 2721 779338846 779338485 5.530000e-141 512.0
22 TraesCS2D01G504000 chr1B 92.891 211 13 2 9 219 22267369 22267577 1.010000e-78 305.0
23 TraesCS2D01G504000 chr6A 92.417 211 16 0 9 219 235219431 235219221 1.300000e-77 302.0
24 TraesCS2D01G504000 chr6A 91.943 211 16 1 9 219 116896297 116896088 2.180000e-75 294.0
25 TraesCS2D01G504000 chr5D 92.417 211 15 1 9 219 116908824 116909033 4.690000e-77 300.0
26 TraesCS2D01G504000 chr3A 91.589 214 17 1 8 221 119407130 119406918 2.180000e-75 294.0
27 TraesCS2D01G504000 chr7D 91.943 211 14 3 9 219 30895055 30894848 7.840000e-75 292.0
28 TraesCS2D01G504000 chr7A 91.866 209 16 1 8 216 651435839 651436046 2.820000e-74 291.0
29 TraesCS2D01G504000 chr6D 90.498 221 17 3 9 226 412624754 412624973 1.010000e-73 289.0
30 TraesCS2D01G504000 chr4A 98.182 55 1 0 6809 6863 624664423 624664369 6.600000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G504000 chr2D 598713248 598721234 7986 True 14750.000000 14750 100.0000 1 7987 1 chr2D.!!$R2 7986
1 TraesCS2D01G504000 chr2B 726546352 726554701 8349 True 2291.400000 4473 94.6856 360 7987 5 chr2B.!!$R1 7627
2 TraesCS2D01G504000 chr2A 732580873 732589049 8176 True 1552.233333 3834 92.8900 362 7987 6 chr2A.!!$R1 7625


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.022106 CGTTTAGTTCGCGAGCTTCG 59.978 55.000 30.27 24.87 43.89 3.79 F
265 266 0.037590 AGCAATACAAGTCGGCCCAA 59.962 50.000 0.00 0.00 0.00 4.12 F
290 291 0.176680 CTACACACAGCCTAGCCCAG 59.823 60.000 0.00 0.00 0.00 4.45 F
297 298 0.322816 CAGCCTAGCCCAGCAAAGAA 60.323 55.000 0.00 0.00 0.00 2.52 F
298 299 0.405585 AGCCTAGCCCAGCAAAGAAA 59.594 50.000 0.00 0.00 0.00 2.52 F
857 864 0.693622 TTGTCCCATTTACCTCCGCA 59.306 50.000 0.00 0.00 0.00 5.69 F
2385 2543 0.742990 TACTAGCAATGTGCCCGTGC 60.743 55.000 0.00 0.00 46.52 5.34 F
3408 3734 0.190815 AAACCCCAAGCAGGAATGGT 59.809 50.000 0.00 0.00 41.22 3.55 F
3983 4314 0.588252 CAGTTTTCTGCCAGGTCACG 59.412 55.000 0.00 0.00 41.24 4.35 F
4285 4625 0.599558 GTGCAGTCACATGTTGGCAT 59.400 50.000 12.00 0.00 42.66 4.40 F
5753 6760 1.000955 AGGCACAGTGAAGTCGGTTAG 59.999 52.381 4.15 0.00 0.00 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1905 1970 0.696501 TTGAGCAGTTCCCTAACCCC 59.303 55.000 0.00 0.00 36.15 4.95 R
1913 1978 1.452108 CCCGGGATTGAGCAGTTCC 60.452 63.158 18.48 0.00 0.00 3.62 R
2109 2264 3.517500 AGTCCAGGAAAGAAGAGATGACC 59.482 47.826 0.00 0.00 0.00 4.02 R
2277 2435 4.634184 TGACTCGCTGTAAGGAACTATC 57.366 45.455 0.00 0.00 38.49 2.08 R
2508 2668 2.619074 CCCTCCCTCACCTCATCAAAAC 60.619 54.545 0.00 0.00 0.00 2.43 R
2591 2751 1.277557 AGTTGTGGCCTTTTTGCAACA 59.722 42.857 3.32 0.00 43.34 3.33 R
3508 3834 0.179936 GGTGATGCTTGGAGAGGAGG 59.820 60.000 0.00 0.00 0.00 4.30 R
4537 4877 0.815734 CTTCATCACGAGTACCCGGT 59.184 55.000 0.75 0.00 0.00 5.28 R
5805 6815 0.038166 AACCATGGACAACATCGCCT 59.962 50.000 21.47 0.00 37.84 5.52 R
6251 7661 0.035439 ACATTACCCGTTGGCAGAGG 60.035 55.000 3.64 3.64 33.59 3.69 R
7261 8744 0.099968 CAGATTGATTGCAGGGCGTG 59.900 55.000 2.14 2.14 0.00 5.34 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.528532 ACGCAGCCTGTATTTTACTACC 58.471 45.455 0.00 0.00 0.00 3.18
22 23 2.870411 CGCAGCCTGTATTTTACTACCC 59.130 50.000 0.00 0.00 0.00 3.69
23 24 3.211865 GCAGCCTGTATTTTACTACCCC 58.788 50.000 0.00 0.00 0.00 4.95
24 25 3.371166 GCAGCCTGTATTTTACTACCCCA 60.371 47.826 0.00 0.00 0.00 4.96
25 26 4.850680 CAGCCTGTATTTTACTACCCCAA 58.149 43.478 0.00 0.00 0.00 4.12
26 27 5.258051 CAGCCTGTATTTTACTACCCCAAA 58.742 41.667 0.00 0.00 0.00 3.28
27 28 5.712917 CAGCCTGTATTTTACTACCCCAAAA 59.287 40.000 0.00 0.00 0.00 2.44
28 29 6.209788 CAGCCTGTATTTTACTACCCCAAAAA 59.790 38.462 0.00 0.00 0.00 1.94
62 63 6.544038 TTTTTACCAAGCCTAACGAGTTAC 57.456 37.500 0.00 0.00 0.00 2.50
63 64 4.870123 TTACCAAGCCTAACGAGTTACA 57.130 40.909 0.00 0.00 0.00 2.41
64 65 3.036075 ACCAAGCCTAACGAGTTACAC 57.964 47.619 0.00 0.00 0.00 2.90
65 66 1.990563 CCAAGCCTAACGAGTTACACG 59.009 52.381 0.00 0.00 0.00 4.49
66 67 2.352030 CCAAGCCTAACGAGTTACACGA 60.352 50.000 9.40 0.00 34.70 4.35
67 68 2.915463 CAAGCCTAACGAGTTACACGAG 59.085 50.000 9.40 0.00 34.70 4.18
68 69 2.157738 AGCCTAACGAGTTACACGAGT 58.842 47.619 9.40 0.00 34.70 4.18
69 70 3.338249 AGCCTAACGAGTTACACGAGTA 58.662 45.455 9.40 0.00 34.70 2.59
70 71 3.126000 AGCCTAACGAGTTACACGAGTAC 59.874 47.826 9.40 0.00 34.70 2.73
71 72 3.126000 GCCTAACGAGTTACACGAGTACT 59.874 47.826 9.40 0.00 34.70 2.73
72 73 4.726306 GCCTAACGAGTTACACGAGTACTC 60.726 50.000 13.18 13.18 34.70 2.59
83 84 2.376915 CGAGTACTCGTGAGATCAGC 57.623 55.000 32.24 0.00 46.99 4.26
84 85 1.937223 CGAGTACTCGTGAGATCAGCT 59.063 52.381 32.24 0.00 46.99 4.24
85 86 2.033236 CGAGTACTCGTGAGATCAGCTC 60.033 54.545 32.24 0.00 46.99 4.09
86 87 5.404155 CGAGTACTCGTGAGATCAGCTCG 62.404 56.522 32.24 7.02 46.99 5.03
96 97 4.849111 GAGATCAGCTCGTTTAACTTGG 57.151 45.455 0.00 0.00 33.17 3.61
97 98 4.246458 GAGATCAGCTCGTTTAACTTGGT 58.754 43.478 0.00 0.00 33.17 3.67
98 99 4.642429 AGATCAGCTCGTTTAACTTGGTT 58.358 39.130 0.00 0.00 0.00 3.67
99 100 5.063880 AGATCAGCTCGTTTAACTTGGTTT 58.936 37.500 0.00 0.00 0.00 3.27
100 101 4.545823 TCAGCTCGTTTAACTTGGTTTG 57.454 40.909 0.00 0.00 0.00 2.93
101 102 3.942748 TCAGCTCGTTTAACTTGGTTTGT 59.057 39.130 0.00 0.00 0.00 2.83
102 103 5.117584 TCAGCTCGTTTAACTTGGTTTGTA 58.882 37.500 0.00 0.00 0.00 2.41
103 104 5.585445 TCAGCTCGTTTAACTTGGTTTGTAA 59.415 36.000 0.00 0.00 0.00 2.41
104 105 6.093771 TCAGCTCGTTTAACTTGGTTTGTAAA 59.906 34.615 0.00 0.00 0.00 2.01
105 106 6.195798 CAGCTCGTTTAACTTGGTTTGTAAAC 59.804 38.462 0.00 0.00 38.17 2.01
106 107 5.170092 GCTCGTTTAACTTGGTTTGTAAACG 59.830 40.000 17.07 17.07 46.05 3.60
109 110 7.299053 CGTTTAACTTGGTTTGTAAACGATC 57.701 36.000 17.90 0.00 46.98 3.69
110 111 7.127686 CGTTTAACTTGGTTTGTAAACGATCT 58.872 34.615 17.90 0.00 46.98 2.75
111 112 7.641020 CGTTTAACTTGGTTTGTAAACGATCTT 59.359 33.333 17.90 0.00 46.98 2.40
112 113 9.934190 GTTTAACTTGGTTTGTAAACGATCTTA 57.066 29.630 0.00 0.00 39.77 2.10
129 130 9.994432 AACGATCTTAAATTAAATCTCAGCTTG 57.006 29.630 0.00 0.00 0.00 4.01
130 131 8.616076 ACGATCTTAAATTAAATCTCAGCTTGG 58.384 33.333 0.00 0.00 0.00 3.61
131 132 7.589221 CGATCTTAAATTAAATCTCAGCTTGGC 59.411 37.037 0.00 0.00 0.00 4.52
132 133 7.944729 TCTTAAATTAAATCTCAGCTTGGCT 57.055 32.000 0.00 0.00 40.77 4.75
133 134 7.989826 TCTTAAATTAAATCTCAGCTTGGCTC 58.010 34.615 0.00 0.00 36.40 4.70
134 135 4.889832 AATTAAATCTCAGCTTGGCTCG 57.110 40.909 0.00 0.00 36.40 5.03
135 136 3.334583 TTAAATCTCAGCTTGGCTCGT 57.665 42.857 0.00 0.00 36.40 4.18
136 137 2.191128 AAATCTCAGCTTGGCTCGTT 57.809 45.000 0.00 0.00 36.40 3.85
137 138 3.334583 AAATCTCAGCTTGGCTCGTTA 57.665 42.857 0.00 0.00 36.40 3.18
138 139 3.550437 AATCTCAGCTTGGCTCGTTAT 57.450 42.857 0.00 0.00 36.40 1.89
139 140 3.550437 ATCTCAGCTTGGCTCGTTATT 57.450 42.857 0.00 0.00 36.40 1.40
140 141 3.334583 TCTCAGCTTGGCTCGTTATTT 57.665 42.857 0.00 0.00 36.40 1.40
141 142 3.674997 TCTCAGCTTGGCTCGTTATTTT 58.325 40.909 0.00 0.00 36.40 1.82
142 143 4.072131 TCTCAGCTTGGCTCGTTATTTTT 58.928 39.130 0.00 0.00 36.40 1.94
160 161 4.624721 TTTTTGAGTTCGAGTCGATTCG 57.375 40.909 22.71 22.71 41.79 3.34
161 162 3.547649 TTTGAGTTCGAGTCGATTCGA 57.452 42.857 26.49 26.49 46.86 3.71
165 166 2.707646 TCGAGTCGATTCGAGCCG 59.292 61.111 26.49 15.02 44.00 5.52
166 167 1.812507 TCGAGTCGATTCGAGCCGA 60.813 57.895 26.49 21.24 44.00 5.54
167 168 1.368255 CGAGTCGATTCGAGCCGAG 60.368 63.158 24.13 0.00 43.03 4.63
168 169 1.722677 GAGTCGATTCGAGCCGAGT 59.277 57.895 9.42 15.57 40.67 4.18
169 170 0.316360 GAGTCGATTCGAGCCGAGTC 60.316 60.000 21.86 21.86 44.50 3.36
170 171 1.025113 AGTCGATTCGAGCCGAGTCA 61.025 55.000 9.42 5.22 41.49 3.41
171 172 0.862283 GTCGATTCGAGCCGAGTCAC 60.862 60.000 9.42 11.09 41.49 3.67
172 173 1.934956 CGATTCGAGCCGAGTCACG 60.935 63.158 16.14 9.19 41.49 4.35
173 174 1.428219 GATTCGAGCCGAGTCACGA 59.572 57.895 12.77 0.00 45.77 4.35
174 175 0.590230 GATTCGAGCCGAGTCACGAG 60.590 60.000 12.77 0.00 45.77 4.18
175 176 2.600122 ATTCGAGCCGAGTCACGAGC 62.600 60.000 0.00 0.00 45.77 5.03
176 177 3.805307 CGAGCCGAGTCACGAGCT 61.805 66.667 5.61 5.61 45.57 4.09
177 178 2.461945 CGAGCCGAGTCACGAGCTA 61.462 63.158 5.84 0.00 44.01 3.32
178 179 1.062845 GAGCCGAGTCACGAGCTAC 59.937 63.158 5.84 0.00 44.01 3.58
179 180 1.370587 GAGCCGAGTCACGAGCTACT 61.371 60.000 5.84 0.00 44.01 2.57
180 181 1.062845 GCCGAGTCACGAGCTACTC 59.937 63.158 4.54 4.54 45.77 2.59
192 193 1.838943 GAGCTACTCGTTTAGTTCGCG 59.161 52.381 0.00 0.00 39.80 5.87
193 194 1.466167 AGCTACTCGTTTAGTTCGCGA 59.534 47.619 3.71 3.71 39.80 5.87
196 197 3.017232 CTCGTTTAGTTCGCGAGCT 57.983 52.632 28.32 28.32 44.03 4.09
197 198 1.337821 CTCGTTTAGTTCGCGAGCTT 58.662 50.000 30.27 14.52 44.03 3.74
198 199 1.317904 CTCGTTTAGTTCGCGAGCTTC 59.682 52.381 30.27 18.62 44.03 3.86
199 200 0.022106 CGTTTAGTTCGCGAGCTTCG 59.978 55.000 30.27 24.87 43.89 3.79
200 201 1.334054 GTTTAGTTCGCGAGCTTCGA 58.666 50.000 30.27 14.13 43.74 3.71
201 202 1.317904 GTTTAGTTCGCGAGCTTCGAG 59.682 52.381 30.27 7.36 43.74 4.04
202 203 0.797249 TTAGTTCGCGAGCTTCGAGC 60.797 55.000 30.27 14.89 43.74 5.03
227 228 3.410631 TTTTCAGCCCTAATCGTGACA 57.589 42.857 0.00 0.00 0.00 3.58
228 229 3.410631 TTTCAGCCCTAATCGTGACAA 57.589 42.857 0.00 0.00 0.00 3.18
229 230 3.410631 TTCAGCCCTAATCGTGACAAA 57.589 42.857 0.00 0.00 0.00 2.83
230 231 3.410631 TCAGCCCTAATCGTGACAAAA 57.589 42.857 0.00 0.00 0.00 2.44
231 232 3.334691 TCAGCCCTAATCGTGACAAAAG 58.665 45.455 0.00 0.00 0.00 2.27
232 233 2.084546 AGCCCTAATCGTGACAAAAGC 58.915 47.619 0.00 0.00 0.00 3.51
233 234 2.084546 GCCCTAATCGTGACAAAAGCT 58.915 47.619 0.00 0.00 0.00 3.74
234 235 3.055385 AGCCCTAATCGTGACAAAAGCTA 60.055 43.478 0.00 0.00 0.00 3.32
235 236 3.063588 GCCCTAATCGTGACAAAAGCTAC 59.936 47.826 0.00 0.00 0.00 3.58
236 237 4.250464 CCCTAATCGTGACAAAAGCTACA 58.750 43.478 0.00 0.00 0.00 2.74
237 238 4.876107 CCCTAATCGTGACAAAAGCTACAT 59.124 41.667 0.00 0.00 0.00 2.29
238 239 5.220662 CCCTAATCGTGACAAAAGCTACATG 60.221 44.000 0.00 0.00 0.00 3.21
239 240 5.351465 CCTAATCGTGACAAAAGCTACATGT 59.649 40.000 2.69 2.69 0.00 3.21
240 241 4.668576 ATCGTGACAAAAGCTACATGTG 57.331 40.909 9.11 0.00 0.00 3.21
241 242 3.462982 TCGTGACAAAAGCTACATGTGT 58.537 40.909 9.11 0.00 0.00 3.72
242 243 3.493129 TCGTGACAAAAGCTACATGTGTC 59.507 43.478 9.11 6.02 39.22 3.67
243 244 3.494626 CGTGACAAAAGCTACATGTGTCT 59.505 43.478 9.11 1.99 39.45 3.41
244 245 4.376413 CGTGACAAAAGCTACATGTGTCTC 60.376 45.833 9.11 5.59 39.45 3.36
245 246 3.740832 TGACAAAAGCTACATGTGTCTCG 59.259 43.478 9.11 1.05 39.45 4.04
246 247 3.987868 GACAAAAGCTACATGTGTCTCGA 59.012 43.478 9.11 0.00 36.50 4.04
247 248 3.990469 ACAAAAGCTACATGTGTCTCGAG 59.010 43.478 9.11 5.93 0.00 4.04
248 249 2.285827 AAGCTACATGTGTCTCGAGC 57.714 50.000 9.11 8.33 0.00 5.03
249 250 1.177401 AGCTACATGTGTCTCGAGCA 58.823 50.000 16.25 6.50 30.51 4.26
250 251 1.546029 AGCTACATGTGTCTCGAGCAA 59.454 47.619 16.25 0.00 30.51 3.91
251 252 2.167281 AGCTACATGTGTCTCGAGCAAT 59.833 45.455 16.25 3.71 30.51 3.56
252 253 3.381590 AGCTACATGTGTCTCGAGCAATA 59.618 43.478 16.25 2.93 30.51 1.90
253 254 3.487574 GCTACATGTGTCTCGAGCAATAC 59.512 47.826 9.11 0.73 0.00 1.89
254 255 3.592898 ACATGTGTCTCGAGCAATACA 57.407 42.857 7.81 6.86 0.00 2.29
255 256 3.925379 ACATGTGTCTCGAGCAATACAA 58.075 40.909 7.81 0.00 0.00 2.41
256 257 3.928992 ACATGTGTCTCGAGCAATACAAG 59.071 43.478 7.81 6.16 0.00 3.16
257 258 3.660501 TGTGTCTCGAGCAATACAAGT 57.339 42.857 7.81 0.00 0.00 3.16
258 259 3.575630 TGTGTCTCGAGCAATACAAGTC 58.424 45.455 7.81 0.00 0.00 3.01
259 260 2.594654 GTGTCTCGAGCAATACAAGTCG 59.405 50.000 7.81 0.00 0.00 4.18
260 261 2.186076 GTCTCGAGCAATACAAGTCGG 58.814 52.381 7.81 0.00 33.21 4.79
261 262 0.924090 CTCGAGCAATACAAGTCGGC 59.076 55.000 0.00 0.00 33.21 5.54
262 263 0.459585 TCGAGCAATACAAGTCGGCC 60.460 55.000 0.00 0.00 33.21 6.13
263 264 1.429148 CGAGCAATACAAGTCGGCCC 61.429 60.000 0.00 0.00 0.00 5.80
264 265 0.392461 GAGCAATACAAGTCGGCCCA 60.392 55.000 0.00 0.00 0.00 5.36
265 266 0.037590 AGCAATACAAGTCGGCCCAA 59.962 50.000 0.00 0.00 0.00 4.12
266 267 0.885196 GCAATACAAGTCGGCCCAAA 59.115 50.000 0.00 0.00 0.00 3.28
267 268 1.402325 GCAATACAAGTCGGCCCAAAC 60.402 52.381 0.00 0.00 0.00 2.93
268 269 1.135803 CAATACAAGTCGGCCCAAACG 60.136 52.381 0.00 0.00 0.00 3.60
269 270 0.322322 ATACAAGTCGGCCCAAACGA 59.678 50.000 0.00 0.00 38.13 3.85
270 271 0.320073 TACAAGTCGGCCCAAACGAG 60.320 55.000 0.00 0.00 41.50 4.18
271 272 2.668550 AAGTCGGCCCAAACGAGC 60.669 61.111 0.00 0.00 41.50 5.03
272 273 3.178540 AAGTCGGCCCAAACGAGCT 62.179 57.895 0.00 0.00 41.50 4.09
273 274 1.823169 AAGTCGGCCCAAACGAGCTA 61.823 55.000 0.00 0.00 41.50 3.32
274 275 2.098831 GTCGGCCCAAACGAGCTAC 61.099 63.158 0.00 0.00 41.50 3.58
275 276 2.047655 CGGCCCAAACGAGCTACA 60.048 61.111 0.00 0.00 0.00 2.74
276 277 2.388232 CGGCCCAAACGAGCTACAC 61.388 63.158 0.00 0.00 0.00 2.90
277 278 1.302192 GGCCCAAACGAGCTACACA 60.302 57.895 0.00 0.00 0.00 3.72
278 279 1.574702 GGCCCAAACGAGCTACACAC 61.575 60.000 0.00 0.00 0.00 3.82
279 280 0.882927 GCCCAAACGAGCTACACACA 60.883 55.000 0.00 0.00 0.00 3.72
280 281 1.148310 CCCAAACGAGCTACACACAG 58.852 55.000 0.00 0.00 0.00 3.66
281 282 0.512952 CCAAACGAGCTACACACAGC 59.487 55.000 0.00 0.00 42.12 4.40
282 283 0.512952 CAAACGAGCTACACACAGCC 59.487 55.000 0.00 0.00 42.84 4.85
283 284 0.393077 AAACGAGCTACACACAGCCT 59.607 50.000 0.00 0.00 42.84 4.58
284 285 1.254026 AACGAGCTACACACAGCCTA 58.746 50.000 0.00 0.00 42.84 3.93
285 286 0.811915 ACGAGCTACACACAGCCTAG 59.188 55.000 0.00 0.00 42.84 3.02
286 287 0.526524 CGAGCTACACACAGCCTAGC 60.527 60.000 0.00 0.00 42.84 3.42
287 288 0.179097 GAGCTACACACAGCCTAGCC 60.179 60.000 0.00 0.00 42.84 3.93
288 289 1.153349 GCTACACACAGCCTAGCCC 60.153 63.158 0.00 0.00 35.40 5.19
289 290 1.899437 GCTACACACAGCCTAGCCCA 61.899 60.000 0.00 0.00 35.40 5.36
290 291 0.176680 CTACACACAGCCTAGCCCAG 59.823 60.000 0.00 0.00 0.00 4.45
291 292 1.899437 TACACACAGCCTAGCCCAGC 61.899 60.000 0.00 0.00 0.00 4.85
292 293 2.930019 ACACAGCCTAGCCCAGCA 60.930 61.111 0.00 0.00 0.00 4.41
293 294 2.352422 CACAGCCTAGCCCAGCAA 59.648 61.111 0.00 0.00 0.00 3.91
294 295 1.303561 CACAGCCTAGCCCAGCAAA 60.304 57.895 0.00 0.00 0.00 3.68
295 296 1.001641 ACAGCCTAGCCCAGCAAAG 60.002 57.895 0.00 0.00 0.00 2.77
296 297 1.300963 CAGCCTAGCCCAGCAAAGA 59.699 57.895 0.00 0.00 0.00 2.52
297 298 0.322816 CAGCCTAGCCCAGCAAAGAA 60.323 55.000 0.00 0.00 0.00 2.52
298 299 0.405585 AGCCTAGCCCAGCAAAGAAA 59.594 50.000 0.00 0.00 0.00 2.52
299 300 1.006400 AGCCTAGCCCAGCAAAGAAAT 59.994 47.619 0.00 0.00 0.00 2.17
300 301 2.242196 AGCCTAGCCCAGCAAAGAAATA 59.758 45.455 0.00 0.00 0.00 1.40
301 302 2.359214 GCCTAGCCCAGCAAAGAAATAC 59.641 50.000 0.00 0.00 0.00 1.89
302 303 2.952310 CCTAGCCCAGCAAAGAAATACC 59.048 50.000 0.00 0.00 0.00 2.73
303 304 2.907458 AGCCCAGCAAAGAAATACCT 57.093 45.000 0.00 0.00 0.00 3.08
304 305 3.175438 AGCCCAGCAAAGAAATACCTT 57.825 42.857 0.00 0.00 0.00 3.50
305 306 2.827921 AGCCCAGCAAAGAAATACCTTG 59.172 45.455 0.00 0.00 0.00 3.61
306 307 2.675032 GCCCAGCAAAGAAATACCTTGC 60.675 50.000 0.00 0.00 0.00 4.01
307 308 2.094026 CCCAGCAAAGAAATACCTTGCC 60.094 50.000 2.58 0.00 0.00 4.52
308 309 2.415893 CCAGCAAAGAAATACCTTGCCG 60.416 50.000 2.58 0.00 0.00 5.69
309 310 1.202348 AGCAAAGAAATACCTTGCCGC 59.798 47.619 2.58 0.00 0.00 6.53
310 311 1.202348 GCAAAGAAATACCTTGCCGCT 59.798 47.619 0.00 0.00 0.00 5.52
311 312 2.732282 GCAAAGAAATACCTTGCCGCTC 60.732 50.000 0.00 0.00 0.00 5.03
312 313 2.749621 CAAAGAAATACCTTGCCGCTCT 59.250 45.455 0.00 0.00 0.00 4.09
313 314 2.789409 AGAAATACCTTGCCGCTCTT 57.211 45.000 0.00 0.00 0.00 2.85
314 315 3.906720 AGAAATACCTTGCCGCTCTTA 57.093 42.857 0.00 0.00 0.00 2.10
315 316 4.423625 AGAAATACCTTGCCGCTCTTAT 57.576 40.909 0.00 0.00 0.00 1.73
316 317 4.781934 AGAAATACCTTGCCGCTCTTATT 58.218 39.130 0.00 0.00 0.00 1.40
317 318 5.193679 AGAAATACCTTGCCGCTCTTATTT 58.806 37.500 0.00 0.00 0.00 1.40
318 319 4.900635 AATACCTTGCCGCTCTTATTTG 57.099 40.909 0.00 0.00 0.00 2.32
319 320 2.200373 ACCTTGCCGCTCTTATTTGT 57.800 45.000 0.00 0.00 0.00 2.83
320 321 2.514803 ACCTTGCCGCTCTTATTTGTT 58.485 42.857 0.00 0.00 0.00 2.83
321 322 2.890945 ACCTTGCCGCTCTTATTTGTTT 59.109 40.909 0.00 0.00 0.00 2.83
322 323 3.320826 ACCTTGCCGCTCTTATTTGTTTT 59.679 39.130 0.00 0.00 0.00 2.43
323 324 3.920412 CCTTGCCGCTCTTATTTGTTTTC 59.080 43.478 0.00 0.00 0.00 2.29
324 325 3.196007 TGCCGCTCTTATTTGTTTTCG 57.804 42.857 0.00 0.00 0.00 3.46
325 326 2.809119 TGCCGCTCTTATTTGTTTTCGA 59.191 40.909 0.00 0.00 0.00 3.71
326 327 3.251245 TGCCGCTCTTATTTGTTTTCGAA 59.749 39.130 0.00 0.00 0.00 3.71
327 328 4.223659 GCCGCTCTTATTTGTTTTCGAAA 58.776 39.130 6.47 6.47 0.00 3.46
328 329 4.677832 GCCGCTCTTATTTGTTTTCGAAAA 59.322 37.500 19.08 19.08 0.00 2.29
329 330 5.174216 GCCGCTCTTATTTGTTTTCGAAAAA 59.826 36.000 24.04 10.25 0.00 1.94
330 331 6.128929 GCCGCTCTTATTTGTTTTCGAAAAAT 60.129 34.615 24.04 16.35 0.00 1.82
331 332 7.437124 CCGCTCTTATTTGTTTTCGAAAAATC 58.563 34.615 24.04 13.67 0.00 2.17
332 333 7.151256 CGCTCTTATTTGTTTTCGAAAAATCG 58.849 34.615 24.04 10.09 0.00 3.34
333 334 6.942767 GCTCTTATTTGTTTTCGAAAAATCGC 59.057 34.615 24.04 12.64 0.00 4.58
334 335 7.358023 GCTCTTATTTGTTTTCGAAAAATCGCA 60.358 33.333 24.04 15.00 0.00 5.10
335 336 8.341477 TCTTATTTGTTTTCGAAAAATCGCAA 57.659 26.923 24.04 19.46 0.00 4.85
336 337 8.476142 TCTTATTTGTTTTCGAAAAATCGCAAG 58.524 29.630 24.04 21.13 0.00 4.01
354 355 7.627585 TCGCAAGACGTAACATATAATAACC 57.372 36.000 0.00 0.00 45.01 2.85
355 356 7.201835 TCGCAAGACGTAACATATAATAACCA 58.798 34.615 0.00 0.00 45.01 3.67
356 357 7.380333 TCGCAAGACGTAACATATAATAACCAG 59.620 37.037 0.00 0.00 45.01 4.00
357 358 7.358931 CGCAAGACGTAACATATAATAACCAGG 60.359 40.741 0.00 0.00 43.02 4.45
358 359 7.095355 GCAAGACGTAACATATAATAACCAGGG 60.095 40.741 0.00 0.00 0.00 4.45
485 487 4.096003 ATTCGTCCACCCGCCCAG 62.096 66.667 0.00 0.00 0.00 4.45
594 596 3.196913 TACGCACCGTCGCTGTTCA 62.197 57.895 0.00 0.00 41.54 3.18
597 599 1.145759 CGCACCGTCGCTGTTCATAT 61.146 55.000 0.00 0.00 0.00 1.78
598 600 1.847818 GCACCGTCGCTGTTCATATA 58.152 50.000 0.00 0.00 0.00 0.86
599 601 1.521423 GCACCGTCGCTGTTCATATAC 59.479 52.381 0.00 0.00 0.00 1.47
600 602 2.798499 GCACCGTCGCTGTTCATATACT 60.798 50.000 0.00 0.00 0.00 2.12
601 603 3.043586 CACCGTCGCTGTTCATATACTC 58.956 50.000 0.00 0.00 0.00 2.59
602 604 2.034305 ACCGTCGCTGTTCATATACTCC 59.966 50.000 0.00 0.00 0.00 3.85
603 605 2.293677 CCGTCGCTGTTCATATACTCCT 59.706 50.000 0.00 0.00 0.00 3.69
604 606 3.556513 CGTCGCTGTTCATATACTCCTC 58.443 50.000 0.00 0.00 0.00 3.71
605 607 3.609644 CGTCGCTGTTCATATACTCCTCC 60.610 52.174 0.00 0.00 0.00 4.30
606 608 3.570550 GTCGCTGTTCATATACTCCTCCT 59.429 47.826 0.00 0.00 0.00 3.69
622 624 3.169099 CCTCCTACATCGGAATCTGGAT 58.831 50.000 0.00 0.00 31.44 3.41
648 651 7.037873 TGGAGGTTACCAGTTAACATTACTCAT 60.038 37.037 8.61 0.00 41.87 2.90
653 656 5.175859 ACCAGTTAACATTACTCATCCGTG 58.824 41.667 8.61 0.00 0.00 4.94
697 703 2.666190 CACACCCGTCACAGCCAG 60.666 66.667 0.00 0.00 0.00 4.85
698 704 4.626081 ACACCCGTCACAGCCAGC 62.626 66.667 0.00 0.00 0.00 4.85
712 718 4.559063 CAGCTGGGCCCGATGGAG 62.559 72.222 19.37 9.80 0.00 3.86
857 864 0.693622 TTGTCCCATTTACCTCCGCA 59.306 50.000 0.00 0.00 0.00 5.69
877 897 4.641645 CCGCAACCAGTCCCTGCA 62.642 66.667 0.00 0.00 35.78 4.41
878 898 2.594303 CGCAACCAGTCCCTGCAA 60.594 61.111 0.00 0.00 35.78 4.08
886 906 4.284550 GTCCCTGCAAGTGGGCCA 62.285 66.667 0.00 0.00 44.23 5.36
1030 1061 2.997897 GTCACACGCTCCCCCTCT 60.998 66.667 0.00 0.00 0.00 3.69
1312 1377 2.754658 GAGGAGGACGGCTCCGAA 60.755 66.667 15.95 0.00 45.24 4.30
1366 1431 1.750399 CCCCCATTGTCTCCGCTTG 60.750 63.158 0.00 0.00 0.00 4.01
1394 1459 2.202623 CGTGTAGTGAGCTCCGGC 60.203 66.667 12.15 1.36 39.06 6.13
1532 1597 7.042051 TCGGTTTTGACTTCTCAAATTAGAGTG 60.042 37.037 0.00 0.00 44.24 3.51
1584 1649 1.812571 CTGTTGGCAGTAATGGTGGAC 59.187 52.381 0.00 0.00 37.92 4.02
1588 1653 1.644786 GGCAGTAATGGTGGACGCAC 61.645 60.000 0.00 0.00 0.00 5.34
1722 1787 5.527951 TGTGGAATTTGAAAATTGAGACGG 58.472 37.500 5.76 0.00 38.64 4.79
1764 1829 2.173569 ACCTCAGTCAAGAGCTTTGGTT 59.826 45.455 8.23 0.00 34.26 3.67
1775 1840 4.464947 AGAGCTTTGGTTAGACTTGCTTT 58.535 39.130 0.00 0.00 0.00 3.51
1797 1862 7.523873 GCTTTATTTTGAGTGGGAAGCTACTTT 60.524 37.037 0.00 0.00 36.15 2.66
1824 1889 8.383175 GGAGGTACTATTTGGAATGAATATGGA 58.617 37.037 0.00 0.00 41.55 3.41
1833 1898 6.211587 TGGAATGAATATGGAAGTTGCTTG 57.788 37.500 0.00 0.00 0.00 4.01
1887 1952 7.725844 AGGTATTTGGAATGAATATGGGAGTTC 59.274 37.037 0.00 0.00 0.00 3.01
1890 1955 6.773976 TTGGAATGAATATGGGAGTTCAAC 57.226 37.500 0.00 0.00 37.82 3.18
1891 1956 6.078456 TGGAATGAATATGGGAGTTCAACT 57.922 37.500 0.00 0.00 37.82 3.16
1905 1970 4.557205 AGTTCAACTAGTTAGTTCTGGCG 58.443 43.478 8.04 0.00 44.19 5.69
1913 1978 0.906775 TTAGTTCTGGCGGGGTTAGG 59.093 55.000 0.00 0.00 0.00 2.69
1944 2009 2.710096 TCCCGGGTTCAGAAATGATC 57.290 50.000 22.86 0.00 0.00 2.92
1945 2010 1.912731 TCCCGGGTTCAGAAATGATCA 59.087 47.619 22.86 0.00 0.00 2.92
1947 2012 3.088532 CCCGGGTTCAGAAATGATCAAA 58.911 45.455 14.18 0.00 0.00 2.69
1948 2013 3.701040 CCCGGGTTCAGAAATGATCAAAT 59.299 43.478 14.18 0.00 0.00 2.32
1949 2014 4.440525 CCCGGGTTCAGAAATGATCAAATG 60.441 45.833 14.18 0.00 0.00 2.32
1950 2015 4.398988 CCGGGTTCAGAAATGATCAAATGA 59.601 41.667 0.00 0.00 0.00 2.57
1951 2016 5.068198 CCGGGTTCAGAAATGATCAAATGAT 59.932 40.000 0.00 0.00 37.51 2.45
1952 2017 5.975344 CGGGTTCAGAAATGATCAAATGATG 59.025 40.000 0.00 0.00 34.37 3.07
1953 2018 6.278363 GGGTTCAGAAATGATCAAATGATGG 58.722 40.000 0.00 0.00 34.37 3.51
1954 2019 6.097270 GGGTTCAGAAATGATCAAATGATGGA 59.903 38.462 0.00 0.00 34.37 3.41
1955 2020 7.364056 GGGTTCAGAAATGATCAAATGATGGAA 60.364 37.037 0.00 0.00 34.37 3.53
1965 2030 7.541162 TGATCAAATGATGGAAAATCTGTCAC 58.459 34.615 0.00 0.00 34.37 3.67
1967 2032 7.528996 TCAAATGATGGAAAATCTGTCACTT 57.471 32.000 0.00 0.00 0.00 3.16
2109 2264 1.466167 CTTTGACCTCAGTTGCATCGG 59.534 52.381 0.00 0.00 0.00 4.18
2161 2316 3.969553 TGTCCTCACACTGCTATCTACT 58.030 45.455 0.00 0.00 0.00 2.57
2262 2420 3.499918 CAGATGGAAATGAAGATACCCGC 59.500 47.826 0.00 0.00 0.00 6.13
2263 2421 3.136443 AGATGGAAATGAAGATACCCGCA 59.864 43.478 0.00 0.00 0.00 5.69
2277 2435 0.937304 CCCGCAATACTCATGGAACG 59.063 55.000 0.00 0.00 0.00 3.95
2385 2543 0.742990 TACTAGCAATGTGCCCGTGC 60.743 55.000 0.00 0.00 46.52 5.34
2442 2601 7.381139 TGTTCACAAACTTGAAAGAAAACACTC 59.619 33.333 0.00 0.00 37.24 3.51
2508 2668 5.180117 CACTCAAAATATATTCCTCGGGCTG 59.820 44.000 0.00 0.00 0.00 4.85
2586 2746 2.490903 CAAATTGGAGCAGAGAAGTGGG 59.509 50.000 0.00 0.00 0.00 4.61
2591 2751 1.488393 GGAGCAGAGAAGTGGGCTATT 59.512 52.381 0.00 0.00 36.59 1.73
2618 2778 3.595190 AAAAGGCCACAACTTACCTCT 57.405 42.857 5.01 0.00 0.00 3.69
2623 2783 2.224548 GGCCACAACTTACCTCTCAGTT 60.225 50.000 0.00 0.00 33.29 3.16
2661 2821 2.972625 TGGTCAGAAATGACGGATGAC 58.027 47.619 2.56 0.00 39.57 3.06
2665 2825 4.437239 GTCAGAAATGACGGATGACAGAT 58.563 43.478 0.00 0.00 39.97 2.90
2674 2834 3.031013 ACGGATGACAGATACACCATCA 58.969 45.455 0.00 0.00 37.67 3.07
2707 2867 9.349713 ACTGAGTCTTTTATAGGAGTAGAGATG 57.650 37.037 0.00 0.00 0.00 2.90
2708 2868 9.349713 CTGAGTCTTTTATAGGAGTAGAGATGT 57.650 37.037 0.00 0.00 0.00 3.06
2733 2893 8.425491 GTGCGTGCTAATATGTATAGTTAGTTG 58.575 37.037 0.00 0.00 0.00 3.16
2734 2894 8.354426 TGCGTGCTAATATGTATAGTTAGTTGA 58.646 33.333 0.00 0.00 0.00 3.18
2920 3246 7.550906 GGTCTTGTGAGCTTCTATAATGAACTT 59.449 37.037 0.00 0.00 37.68 2.66
2925 3251 9.719355 TGTGAGCTTCTATAATGAACTTTAACA 57.281 29.630 0.00 0.00 0.00 2.41
3017 3343 7.728847 ATAATGAACTGCAGCGACATATTTA 57.271 32.000 15.27 7.77 0.00 1.40
3053 3379 7.821359 TGAATCAGAGGAAAGACAAAGTGATAG 59.179 37.037 0.00 0.00 0.00 2.08
3106 3432 1.609061 GGCTCTCTTTAGCAGTGCACA 60.609 52.381 21.04 0.90 44.64 4.57
3127 3453 4.884164 ACAGCTAAGAAAAGAGTGCAGTTT 59.116 37.500 0.00 0.00 0.00 2.66
3343 3669 5.591643 AAAGCTATTACAGTCACGTGTTG 57.408 39.130 16.51 16.92 31.46 3.33
3408 3734 0.190815 AAACCCCAAGCAGGAATGGT 59.809 50.000 0.00 0.00 41.22 3.55
3508 3834 2.437413 CTGGTAACTTTTCTCCTGGCC 58.563 52.381 0.00 0.00 37.61 5.36
3591 3917 3.020274 GGAAGAGAAAAGGCAGGGATTC 58.980 50.000 0.00 0.00 0.00 2.52
3618 3944 1.588239 AGCCTGAAGATCATGGACCA 58.412 50.000 0.00 0.00 0.00 4.02
3749 4080 4.218635 TGGTTGCTTCTGTTGTTGTTTACA 59.781 37.500 0.00 0.00 34.12 2.41
3785 4116 2.092753 TCTCATGCAGGACCTCAAATCC 60.093 50.000 0.00 0.00 36.38 3.01
3814 4145 3.619038 GGTTCTCCTGTCGATTTAGCAAG 59.381 47.826 0.00 0.00 0.00 4.01
3884 4215 4.019681 AGTCGGAGATTTAAATCACCACCA 60.020 41.667 31.37 18.56 43.67 4.17
3983 4314 0.588252 CAGTTTTCTGCCAGGTCACG 59.412 55.000 0.00 0.00 41.24 4.35
4196 4529 4.329801 TGCATTTGCTATTGACTGTAGACG 59.670 41.667 3.94 0.00 42.66 4.18
4249 4582 9.433317 GTGACCGTATTTGATATAAACATGTTG 57.567 33.333 12.82 0.00 0.00 3.33
4283 4623 4.950744 GTGCAGTCACATGTTGGC 57.049 55.556 0.00 0.00 42.66 4.52
4284 4624 2.032170 GTGCAGTCACATGTTGGCA 58.968 52.632 0.00 0.57 42.66 4.92
4285 4625 0.599558 GTGCAGTCACATGTTGGCAT 59.400 50.000 12.00 0.00 42.66 4.40
4394 4734 3.388676 TCTTAAGGTCGACACCAAGGAAA 59.611 43.478 18.91 0.00 46.68 3.13
4400 4740 2.940410 GTCGACACCAAGGAAAACTTCA 59.060 45.455 11.55 0.00 37.29 3.02
4429 4769 4.645136 AGTTCCAACTTCTGGGAAAACTTC 59.355 41.667 0.00 0.00 46.44 3.01
4468 4808 6.602179 TCACATTAGATTTTCTGAAACTGCG 58.398 36.000 1.58 0.00 0.00 5.18
4496 4836 1.754803 CTAAGTCGAGGCACCATGGTA 59.245 52.381 19.28 0.00 0.00 3.25
4537 4877 8.996651 TTGATAATGGTGTCTCTATACTCTCA 57.003 34.615 0.00 0.00 0.00 3.27
4806 5146 5.637810 GTGAGTCGTGAATTTTCCTGTATCA 59.362 40.000 0.00 0.00 0.00 2.15
4871 5211 2.875296 TGATTGTATAAGCATGGCCCC 58.125 47.619 0.00 0.00 0.00 5.80
5086 5432 7.174772 TGAAATTCTGCTCAGTTTGCTATAACA 59.825 33.333 0.00 0.00 0.00 2.41
5214 5561 2.774234 AGATGAGGTACCACATGGGAAG 59.226 50.000 26.98 0.00 41.15 3.46
5305 5652 2.092323 TGCTACATACTGCTCTGTCGT 58.908 47.619 0.00 0.00 0.00 4.34
5346 5693 1.984570 TGCTACGGAAGAGGCTGCT 60.985 57.895 0.00 0.00 34.51 4.24
5352 5699 1.078567 GGAAGAGGCTGCTGACCAG 60.079 63.158 0.00 0.00 44.67 4.00
5459 5806 9.920946 TCCTTGCTGGAATAAATCTAAACTTAT 57.079 29.630 0.00 0.00 42.94 1.73
5512 5859 9.170734 TGTTCAATCAAATTGATTTTGTTTGGA 57.829 25.926 17.65 8.21 44.03 3.53
5513 5860 9.437045 GTTCAATCAAATTGATTTTGTTTGGAC 57.563 29.630 17.65 15.61 44.03 4.02
5515 5862 7.992033 TCAATCAAATTGATTTTGTTTGGACCT 59.008 29.630 17.65 0.00 44.03 3.85
5579 5952 7.824779 GTCAACCCTCTTTTAGTCATCTTGTAT 59.175 37.037 0.00 0.00 0.00 2.29
5584 5957 7.121168 CCCTCTTTTAGTCATCTTGTATGCAAA 59.879 37.037 0.00 0.00 33.73 3.68
5585 5958 8.514594 CCTCTTTTAGTCATCTTGTATGCAAAA 58.485 33.333 0.00 0.00 33.73 2.44
5628 6001 5.765182 ACAGCCATGGTGAGCTATTTATTAC 59.235 40.000 14.67 0.00 37.18 1.89
5649 6022 4.646572 ACCAAAGGAAGTCATCAAGAGTC 58.353 43.478 0.00 0.00 0.00 3.36
5656 6029 1.821753 AGTCATCAAGAGTCAGACCCG 59.178 52.381 0.00 0.00 0.00 5.28
5660 6033 3.056536 TCATCAAGAGTCAGACCCGAAAG 60.057 47.826 0.00 0.00 0.00 2.62
5678 6051 6.701432 CGAAAGGTTACAAATACGAAGACT 57.299 37.500 0.00 0.00 0.00 3.24
5679 6052 7.113704 CGAAAGGTTACAAATACGAAGACTT 57.886 36.000 0.00 0.00 0.00 3.01
5680 6053 8.231304 CGAAAGGTTACAAATACGAAGACTTA 57.769 34.615 0.00 0.00 0.00 2.24
5681 6054 8.866956 CGAAAGGTTACAAATACGAAGACTTAT 58.133 33.333 0.00 0.00 0.00 1.73
5682 6055 9.968743 GAAAGGTTACAAATACGAAGACTTATG 57.031 33.333 0.00 0.00 0.00 1.90
5683 6056 9.498176 AAAGGTTACAAATACGAAGACTTATGT 57.502 29.630 0.00 0.00 0.00 2.29
5753 6760 1.000955 AGGCACAGTGAAGTCGGTTAG 59.999 52.381 4.15 0.00 0.00 2.34
5794 6804 4.163458 AGCCGATTCCTGTGACCTAAATTA 59.837 41.667 0.00 0.00 0.00 1.40
5795 6805 4.272748 GCCGATTCCTGTGACCTAAATTAC 59.727 45.833 0.00 0.00 0.00 1.89
5796 6806 5.424757 CCGATTCCTGTGACCTAAATTACA 58.575 41.667 0.00 0.00 0.00 2.41
5797 6807 5.523916 CCGATTCCTGTGACCTAAATTACAG 59.476 44.000 0.00 0.00 40.06 2.74
5798 6808 6.106673 CGATTCCTGTGACCTAAATTACAGT 58.893 40.000 0.00 0.00 39.02 3.55
5799 6809 6.036083 CGATTCCTGTGACCTAAATTACAGTG 59.964 42.308 0.00 0.00 39.02 3.66
5800 6810 6.428083 TTCCTGTGACCTAAATTACAGTGA 57.572 37.500 0.00 0.00 39.02 3.41
5802 6812 6.464222 TCCTGTGACCTAAATTACAGTGAAG 58.536 40.000 0.00 0.00 39.02 3.02
5804 6814 6.710744 CCTGTGACCTAAATTACAGTGAAGTT 59.289 38.462 0.00 0.00 39.02 2.66
5805 6815 7.876068 CCTGTGACCTAAATTACAGTGAAGTTA 59.124 37.037 0.00 0.00 39.02 2.24
5806 6816 8.827177 TGTGACCTAAATTACAGTGAAGTTAG 57.173 34.615 0.00 6.38 36.95 2.34
5840 7247 6.426633 GTCCATGGTTAACAATTTTTCCCAAG 59.573 38.462 12.58 0.00 0.00 3.61
5887 7296 2.025321 AGTTGTCCTTTCGGGCCATATT 60.025 45.455 4.39 0.00 32.45 1.28
5888 7297 2.341846 TGTCCTTTCGGGCCATATTC 57.658 50.000 4.39 0.00 32.45 1.75
6144 7554 2.960384 TGATGGCTTTGCTGATTATGGG 59.040 45.455 0.00 0.00 0.00 4.00
6170 7580 3.795688 TCCAGAATCAAGAGCAAAGGT 57.204 42.857 0.00 0.00 0.00 3.50
6294 7704 9.964303 TGTGATATGTGCAAACCATTTTATATC 57.036 29.630 0.00 0.00 0.00 1.63
6347 7801 7.043192 GCATTTAGATGTGTGGCATTAATTGTC 60.043 37.037 0.00 0.00 38.06 3.18
6355 7809 6.488344 TGTGTGGCATTAATTGTCTCTTTGTA 59.512 34.615 0.00 0.00 0.00 2.41
6357 7811 6.714810 TGTGGCATTAATTGTCTCTTTGTACT 59.285 34.615 0.00 0.00 0.00 2.73
6461 7915 1.892474 GCTGTGCCTCCCAACAATAAA 59.108 47.619 0.00 0.00 0.00 1.40
6542 7996 3.015516 GGTTTCAGAGAAACCGGCA 57.984 52.632 21.66 0.00 40.10 5.69
6565 8019 3.713858 TGGTAAGTCTGTCGAAAACGA 57.286 42.857 0.00 0.00 0.00 3.85
6668 8122 1.767681 AGGGCATCATGAAGAGGAGTC 59.232 52.381 0.00 0.00 0.00 3.36
6676 8130 3.053320 TCATGAAGAGGAGTCTAGGAGCA 60.053 47.826 0.00 0.00 30.45 4.26
6681 8135 0.820871 AGGAGTCTAGGAGCAAAGCG 59.179 55.000 0.00 0.00 0.00 4.68
6704 8158 1.287425 GTTATACCAGGTCGCAGTGC 58.713 55.000 4.58 4.58 0.00 4.40
6729 8184 4.513406 AATATTAACGGCCCCAAGAAGA 57.487 40.909 0.00 0.00 0.00 2.87
6744 8199 2.826488 AGAAGAGGGGCGCTATGATAT 58.174 47.619 7.64 0.00 0.00 1.63
7054 8516 8.152898 GCATTGCCACTATCCATATCATATCTA 58.847 37.037 0.00 0.00 0.00 1.98
7057 8519 9.666191 TTGCCACTATCCATATCATATCTATCT 57.334 33.333 0.00 0.00 0.00 1.98
7058 8520 9.086758 TGCCACTATCCATATCATATCTATCTG 57.913 37.037 0.00 0.00 0.00 2.90
7059 8521 9.087871 GCCACTATCCATATCATATCTATCTGT 57.912 37.037 0.00 0.00 0.00 3.41
7207 8673 3.262420 CTCGTATGGGTCAAACTCTTGG 58.738 50.000 0.00 0.00 33.01 3.61
7275 8758 1.750018 CCATCACGCCCTGCAATCA 60.750 57.895 0.00 0.00 0.00 2.57
7383 8870 0.320771 AAGCGTCACATCAGTCCACC 60.321 55.000 0.00 0.00 0.00 4.61
7402 8889 1.396301 CCGAGAAAAGATCTGCACTGC 59.604 52.381 0.00 0.00 38.96 4.40
7403 8890 2.071540 CGAGAAAAGATCTGCACTGCA 58.928 47.619 3.11 3.11 38.96 4.41
7408 8895 0.250597 AAGATCTGCACTGCACTGCA 60.251 50.000 18.27 18.27 45.06 4.41
7410 8897 0.954449 GATCTGCACTGCACTGCACT 60.954 55.000 15.89 7.47 42.36 4.40
7411 8898 1.235281 ATCTGCACTGCACTGCACTG 61.235 55.000 15.89 8.67 42.36 3.66
7412 8899 3.538028 CTGCACTGCACTGCACTGC 62.538 63.158 22.02 22.02 44.42 4.40
7413 8900 3.285215 GCACTGCACTGCACTGCT 61.285 61.111 21.70 0.00 42.21 4.24
7415 8902 1.890510 CACTGCACTGCACTGCTCA 60.891 57.895 17.53 0.00 38.07 4.26
7416 8903 1.072678 ACTGCACTGCACTGCTCAT 59.927 52.632 17.53 2.66 38.07 2.90
7417 8904 0.322648 ACTGCACTGCACTGCTCATA 59.677 50.000 17.53 0.00 38.07 2.15
7418 8905 0.725686 CTGCACTGCACTGCTCATAC 59.274 55.000 17.53 0.00 38.07 2.39
7419 8906 0.674581 TGCACTGCACTGCTCATACC 60.675 55.000 17.53 0.00 38.07 2.73
7547 9040 2.016318 TCACATCATGACCCAAATCGC 58.984 47.619 0.00 0.00 29.99 4.58
7549 9042 1.298602 CATCATGACCCAAATCGCGA 58.701 50.000 13.09 13.09 0.00 5.87
7599 9092 3.767230 CCGTTGCAGACAGACGCG 61.767 66.667 3.53 3.53 35.60 6.01
7650 9143 1.999071 GCCGGTTATTGCAATGCCGA 61.999 55.000 36.79 15.06 39.17 5.54
7739 9234 2.646930 ACATGACATGTGCCGATGATT 58.353 42.857 20.21 0.00 43.01 2.57
7807 9302 8.512138 ACTGGTTTACTGCTACATGTTATTTTC 58.488 33.333 2.30 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.528532 GGTAGTAAAATACAGGCTGCGT 58.471 45.455 15.89 0.00 0.00 5.24
1 2 2.870411 GGGTAGTAAAATACAGGCTGCG 59.130 50.000 15.89 0.00 0.00 5.18
2 3 3.211865 GGGGTAGTAAAATACAGGCTGC 58.788 50.000 15.89 0.00 0.00 5.25
3 4 4.497291 TGGGGTAGTAAAATACAGGCTG 57.503 45.455 14.16 14.16 0.00 4.85
4 5 5.523883 TTTGGGGTAGTAAAATACAGGCT 57.476 39.130 0.00 0.00 0.00 4.58
5 6 6.593268 TTTTTGGGGTAGTAAAATACAGGC 57.407 37.500 0.00 0.00 0.00 4.85
39 40 6.018016 GTGTAACTCGTTAGGCTTGGTAAAAA 60.018 38.462 0.00 0.00 0.00 1.94
40 41 5.466393 GTGTAACTCGTTAGGCTTGGTAAAA 59.534 40.000 0.00 0.00 0.00 1.52
41 42 4.990426 GTGTAACTCGTTAGGCTTGGTAAA 59.010 41.667 0.00 0.00 0.00 2.01
42 43 4.559153 GTGTAACTCGTTAGGCTTGGTAA 58.441 43.478 0.00 0.00 0.00 2.85
43 44 3.366273 CGTGTAACTCGTTAGGCTTGGTA 60.366 47.826 0.00 0.00 31.75 3.25
44 45 2.608752 CGTGTAACTCGTTAGGCTTGGT 60.609 50.000 0.00 0.00 31.75 3.67
45 46 1.990563 CGTGTAACTCGTTAGGCTTGG 59.009 52.381 0.00 0.00 31.75 3.61
46 47 2.915463 CTCGTGTAACTCGTTAGGCTTG 59.085 50.000 0.00 0.00 31.75 4.01
47 48 2.555757 ACTCGTGTAACTCGTTAGGCTT 59.444 45.455 0.00 0.00 31.75 4.35
48 49 2.157738 ACTCGTGTAACTCGTTAGGCT 58.842 47.619 0.00 0.00 31.75 4.58
49 50 2.626088 ACTCGTGTAACTCGTTAGGC 57.374 50.000 0.00 0.00 31.75 3.93
50 51 4.491602 CGAGTACTCGTGTAACTCGTTAGG 60.492 50.000 32.24 3.28 46.99 2.69
51 52 4.563335 CGAGTACTCGTGTAACTCGTTAG 58.437 47.826 32.24 3.91 46.99 2.34
52 53 4.568229 CGAGTACTCGTGTAACTCGTTA 57.432 45.455 32.24 0.00 46.99 3.18
53 54 3.446184 CGAGTACTCGTGTAACTCGTT 57.554 47.619 32.24 0.00 46.99 3.85
64 65 2.033236 GAGCTGATCTCACGAGTACTCG 60.033 54.545 36.93 36.93 44.15 4.18
65 66 2.033236 CGAGCTGATCTCACGAGTACTC 60.033 54.545 13.18 13.18 41.98 2.59
66 67 1.937223 CGAGCTGATCTCACGAGTACT 59.063 52.381 0.00 0.00 41.98 2.73
67 68 1.666700 ACGAGCTGATCTCACGAGTAC 59.333 52.381 0.00 0.00 41.98 2.73
68 69 2.025589 ACGAGCTGATCTCACGAGTA 57.974 50.000 0.00 0.00 41.98 2.59
69 70 1.169577 AACGAGCTGATCTCACGAGT 58.830 50.000 0.00 0.00 41.98 4.18
70 71 2.270275 AAACGAGCTGATCTCACGAG 57.730 50.000 0.00 0.00 41.98 4.18
71 72 3.190744 AGTTAAACGAGCTGATCTCACGA 59.809 43.478 0.00 0.00 41.98 4.35
72 73 3.502920 AGTTAAACGAGCTGATCTCACG 58.497 45.455 0.00 0.00 41.98 4.35
73 74 4.092091 CCAAGTTAAACGAGCTGATCTCAC 59.908 45.833 0.00 0.00 41.98 3.51
74 75 4.245660 CCAAGTTAAACGAGCTGATCTCA 58.754 43.478 0.00 0.00 41.98 3.27
75 76 4.246458 ACCAAGTTAAACGAGCTGATCTC 58.754 43.478 0.00 0.00 38.47 2.75
76 77 4.273148 ACCAAGTTAAACGAGCTGATCT 57.727 40.909 0.00 0.00 0.00 2.75
77 78 5.147162 CAAACCAAGTTAAACGAGCTGATC 58.853 41.667 0.00 0.00 0.00 2.92
78 79 4.578928 ACAAACCAAGTTAAACGAGCTGAT 59.421 37.500 0.00 0.00 0.00 2.90
79 80 3.942748 ACAAACCAAGTTAAACGAGCTGA 59.057 39.130 0.00 0.00 0.00 4.26
80 81 4.287238 ACAAACCAAGTTAAACGAGCTG 57.713 40.909 0.00 0.00 0.00 4.24
81 82 6.260377 GTTTACAAACCAAGTTAAACGAGCT 58.740 36.000 0.00 0.00 32.82 4.09
82 83 5.170092 CGTTTACAAACCAAGTTAAACGAGC 59.830 40.000 16.52 0.00 46.98 5.03
83 84 6.706239 CGTTTACAAACCAAGTTAAACGAG 57.294 37.500 16.52 0.00 46.98 4.18
85 86 7.127686 AGATCGTTTACAAACCAAGTTAAACG 58.872 34.615 15.73 15.73 46.05 3.60
86 87 8.845942 AAGATCGTTTACAAACCAAGTTAAAC 57.154 30.769 0.00 0.00 35.51 2.01
103 104 9.994432 CAAGCTGAGATTTAATTTAAGATCGTT 57.006 29.630 0.00 0.00 0.00 3.85
104 105 8.616076 CCAAGCTGAGATTTAATTTAAGATCGT 58.384 33.333 0.00 0.00 0.00 3.73
105 106 7.589221 GCCAAGCTGAGATTTAATTTAAGATCG 59.411 37.037 0.00 0.00 0.00 3.69
106 107 8.628280 AGCCAAGCTGAGATTTAATTTAAGATC 58.372 33.333 0.00 0.00 37.57 2.75
107 108 8.530804 AGCCAAGCTGAGATTTAATTTAAGAT 57.469 30.769 0.00 0.00 37.57 2.40
108 109 7.201644 CGAGCCAAGCTGAGATTTAATTTAAGA 60.202 37.037 0.00 0.00 39.88 2.10
109 110 6.909357 CGAGCCAAGCTGAGATTTAATTTAAG 59.091 38.462 0.00 0.00 39.88 1.85
110 111 6.374333 ACGAGCCAAGCTGAGATTTAATTTAA 59.626 34.615 0.00 0.00 39.88 1.52
111 112 5.880332 ACGAGCCAAGCTGAGATTTAATTTA 59.120 36.000 0.00 0.00 39.88 1.40
112 113 4.702131 ACGAGCCAAGCTGAGATTTAATTT 59.298 37.500 0.00 0.00 39.88 1.82
113 114 4.265073 ACGAGCCAAGCTGAGATTTAATT 58.735 39.130 0.00 0.00 39.88 1.40
114 115 3.878778 ACGAGCCAAGCTGAGATTTAAT 58.121 40.909 0.00 0.00 39.88 1.40
115 116 3.334583 ACGAGCCAAGCTGAGATTTAA 57.665 42.857 0.00 0.00 39.88 1.52
116 117 3.334583 AACGAGCCAAGCTGAGATTTA 57.665 42.857 0.00 0.00 39.88 1.40
117 118 2.191128 AACGAGCCAAGCTGAGATTT 57.809 45.000 0.00 0.00 39.88 2.17
118 119 3.550437 ATAACGAGCCAAGCTGAGATT 57.450 42.857 0.00 0.00 39.88 2.40
119 120 3.550437 AATAACGAGCCAAGCTGAGAT 57.450 42.857 0.00 0.00 39.88 2.75
120 121 3.334583 AAATAACGAGCCAAGCTGAGA 57.665 42.857 0.00 0.00 39.88 3.27
121 122 4.425577 AAAAATAACGAGCCAAGCTGAG 57.574 40.909 0.00 0.00 39.88 3.35
139 140 4.292599 TCGAATCGACTCGAACTCAAAAA 58.707 39.130 17.53 0.00 44.49 1.94
140 141 3.892522 TCGAATCGACTCGAACTCAAAA 58.107 40.909 17.53 0.00 44.49 2.44
141 142 3.489444 CTCGAATCGACTCGAACTCAAA 58.511 45.455 20.20 0.00 46.53 2.69
142 143 2.728225 GCTCGAATCGACTCGAACTCAA 60.728 50.000 20.20 0.00 46.53 3.02
143 144 1.202043 GCTCGAATCGACTCGAACTCA 60.202 52.381 20.20 0.00 46.53 3.41
144 145 1.458746 GCTCGAATCGACTCGAACTC 58.541 55.000 20.20 8.53 46.53 3.01
145 146 0.099082 GGCTCGAATCGACTCGAACT 59.901 55.000 20.20 0.00 46.53 3.01
146 147 1.194896 CGGCTCGAATCGACTCGAAC 61.195 60.000 20.20 15.50 46.53 3.95
147 148 1.062047 CGGCTCGAATCGACTCGAA 59.938 57.895 20.20 4.48 46.53 3.71
148 149 1.763200 CTCGGCTCGAATCGACTCGA 61.763 60.000 18.71 18.71 45.22 4.04
149 150 1.368255 CTCGGCTCGAATCGACTCG 60.368 63.158 10.51 10.51 40.25 4.18
150 151 0.316360 GACTCGGCTCGAATCGACTC 60.316 60.000 0.00 0.00 34.74 3.36
151 152 1.025113 TGACTCGGCTCGAATCGACT 61.025 55.000 0.00 0.00 34.78 4.18
152 153 0.862283 GTGACTCGGCTCGAATCGAC 60.862 60.000 0.00 0.00 34.78 4.20
153 154 1.428219 GTGACTCGGCTCGAATCGA 59.572 57.895 4.91 4.91 34.78 3.59
154 155 1.934956 CGTGACTCGGCTCGAATCG 60.935 63.158 0.00 0.00 34.78 3.34
155 156 0.590230 CTCGTGACTCGGCTCGAATC 60.590 60.000 0.00 0.08 40.32 2.52
156 157 1.429825 CTCGTGACTCGGCTCGAAT 59.570 57.895 0.00 0.00 40.32 3.34
157 158 2.868196 CTCGTGACTCGGCTCGAA 59.132 61.111 0.00 0.00 40.32 3.71
158 159 2.847435 TAGCTCGTGACTCGGCTCGA 62.847 60.000 13.56 0.00 42.01 4.04
159 160 2.461945 TAGCTCGTGACTCGGCTCG 61.462 63.158 13.56 0.00 42.01 5.03
160 161 1.062845 GTAGCTCGTGACTCGGCTC 59.937 63.158 13.56 5.64 42.01 4.70
161 162 1.370587 GAGTAGCTCGTGACTCGGCT 61.371 60.000 14.29 14.29 43.93 5.52
162 163 1.062845 GAGTAGCTCGTGACTCGGC 59.937 63.158 0.00 0.27 40.32 5.54
172 173 1.838943 CGCGAACTAAACGAGTAGCTC 59.161 52.381 0.00 0.00 37.44 4.09
173 174 1.466167 TCGCGAACTAAACGAGTAGCT 59.534 47.619 6.20 0.00 37.44 3.32
174 175 1.838943 CTCGCGAACTAAACGAGTAGC 59.161 52.381 11.33 0.00 46.19 3.58
179 180 1.334054 GAAGCTCGCGAACTAAACGA 58.666 50.000 13.17 0.00 0.00 3.85
180 181 0.022106 CGAAGCTCGCGAACTAAACG 59.978 55.000 13.17 14.37 31.14 3.60
181 182 1.317904 CTCGAAGCTCGCGAACTAAAC 59.682 52.381 13.17 6.81 40.21 2.01
182 183 1.614385 CTCGAAGCTCGCGAACTAAA 58.386 50.000 13.17 0.57 40.21 1.85
183 184 0.797249 GCTCGAAGCTCGCGAACTAA 60.797 55.000 13.17 0.93 40.21 2.24
184 185 1.226323 GCTCGAAGCTCGCGAACTA 60.226 57.895 13.17 0.00 40.21 2.24
185 186 2.505118 GCTCGAAGCTCGCGAACT 60.505 61.111 11.33 8.63 40.21 3.01
206 207 3.745799 TGTCACGATTAGGGCTGAAAAA 58.254 40.909 0.00 0.00 0.00 1.94
207 208 3.410631 TGTCACGATTAGGGCTGAAAA 57.589 42.857 0.00 0.00 0.00 2.29
208 209 3.410631 TTGTCACGATTAGGGCTGAAA 57.589 42.857 0.00 0.00 0.00 2.69
209 210 3.410631 TTTGTCACGATTAGGGCTGAA 57.589 42.857 0.00 0.00 0.00 3.02
210 211 3.334691 CTTTTGTCACGATTAGGGCTGA 58.665 45.455 0.00 0.00 0.00 4.26
211 212 2.159517 GCTTTTGTCACGATTAGGGCTG 60.160 50.000 0.00 0.00 0.00 4.85
212 213 2.084546 GCTTTTGTCACGATTAGGGCT 58.915 47.619 0.00 0.00 0.00 5.19
213 214 2.084546 AGCTTTTGTCACGATTAGGGC 58.915 47.619 0.00 0.00 0.00 5.19
214 215 4.250464 TGTAGCTTTTGTCACGATTAGGG 58.750 43.478 0.00 0.00 0.00 3.53
215 216 5.351465 ACATGTAGCTTTTGTCACGATTAGG 59.649 40.000 0.00 0.00 0.00 2.69
216 217 6.128553 ACACATGTAGCTTTTGTCACGATTAG 60.129 38.462 0.00 0.00 0.00 1.73
217 218 5.699001 ACACATGTAGCTTTTGTCACGATTA 59.301 36.000 0.00 0.00 0.00 1.75
218 219 4.515191 ACACATGTAGCTTTTGTCACGATT 59.485 37.500 0.00 0.00 0.00 3.34
219 220 4.065088 ACACATGTAGCTTTTGTCACGAT 58.935 39.130 0.00 0.00 0.00 3.73
220 221 3.462982 ACACATGTAGCTTTTGTCACGA 58.537 40.909 0.00 0.00 0.00 4.35
221 222 3.494626 AGACACATGTAGCTTTTGTCACG 59.505 43.478 0.00 0.00 39.26 4.35
222 223 4.376413 CGAGACACATGTAGCTTTTGTCAC 60.376 45.833 0.00 0.00 39.26 3.67
223 224 3.740832 CGAGACACATGTAGCTTTTGTCA 59.259 43.478 0.00 0.00 39.26 3.58
224 225 3.987868 TCGAGACACATGTAGCTTTTGTC 59.012 43.478 0.00 0.00 37.45 3.18
225 226 3.990092 TCGAGACACATGTAGCTTTTGT 58.010 40.909 0.00 0.00 0.00 2.83
226 227 3.181526 GCTCGAGACACATGTAGCTTTTG 60.182 47.826 18.75 0.00 0.00 2.44
227 228 2.996621 GCTCGAGACACATGTAGCTTTT 59.003 45.455 18.75 0.00 0.00 2.27
228 229 2.029020 TGCTCGAGACACATGTAGCTTT 60.029 45.455 18.75 0.00 29.76 3.51
229 230 1.546029 TGCTCGAGACACATGTAGCTT 59.454 47.619 18.75 0.00 29.76 3.74
230 231 1.177401 TGCTCGAGACACATGTAGCT 58.823 50.000 18.75 8.20 29.76 3.32
231 232 1.996292 TTGCTCGAGACACATGTAGC 58.004 50.000 18.75 8.75 0.00 3.58
232 233 4.672409 TGTATTGCTCGAGACACATGTAG 58.328 43.478 18.75 0.00 0.00 2.74
233 234 4.712122 TGTATTGCTCGAGACACATGTA 57.288 40.909 18.75 0.00 0.00 2.29
234 235 3.592898 TGTATTGCTCGAGACACATGT 57.407 42.857 18.75 0.00 0.00 3.21
235 236 3.928992 ACTTGTATTGCTCGAGACACATG 59.071 43.478 18.75 15.96 0.00 3.21
236 237 4.177026 GACTTGTATTGCTCGAGACACAT 58.823 43.478 18.75 11.65 0.00 3.21
237 238 3.575630 GACTTGTATTGCTCGAGACACA 58.424 45.455 18.75 10.45 0.00 3.72
238 239 2.594654 CGACTTGTATTGCTCGAGACAC 59.405 50.000 18.75 7.84 0.00 3.67
239 240 2.415491 CCGACTTGTATTGCTCGAGACA 60.415 50.000 18.75 11.13 0.00 3.41
240 241 2.186076 CCGACTTGTATTGCTCGAGAC 58.814 52.381 18.75 8.32 0.00 3.36
241 242 1.469251 GCCGACTTGTATTGCTCGAGA 60.469 52.381 18.75 0.00 0.00 4.04
242 243 0.924090 GCCGACTTGTATTGCTCGAG 59.076 55.000 8.45 8.45 0.00 4.04
243 244 0.459585 GGCCGACTTGTATTGCTCGA 60.460 55.000 0.00 0.00 0.00 4.04
244 245 1.429148 GGGCCGACTTGTATTGCTCG 61.429 60.000 0.00 0.00 0.00 5.03
245 246 0.392461 TGGGCCGACTTGTATTGCTC 60.392 55.000 0.00 0.00 0.00 4.26
246 247 0.037590 TTGGGCCGACTTGTATTGCT 59.962 50.000 0.00 0.00 0.00 3.91
247 248 0.885196 TTTGGGCCGACTTGTATTGC 59.115 50.000 0.00 0.00 0.00 3.56
248 249 1.135803 CGTTTGGGCCGACTTGTATTG 60.136 52.381 0.00 0.00 0.00 1.90
249 250 1.161843 CGTTTGGGCCGACTTGTATT 58.838 50.000 0.00 0.00 0.00 1.89
250 251 0.322322 TCGTTTGGGCCGACTTGTAT 59.678 50.000 0.00 0.00 0.00 2.29
251 252 0.320073 CTCGTTTGGGCCGACTTGTA 60.320 55.000 0.00 0.00 0.00 2.41
252 253 1.597027 CTCGTTTGGGCCGACTTGT 60.597 57.895 0.00 0.00 0.00 3.16
253 254 2.966309 GCTCGTTTGGGCCGACTTG 61.966 63.158 0.00 0.00 0.00 3.16
254 255 1.823169 TAGCTCGTTTGGGCCGACTT 61.823 55.000 0.00 0.00 0.00 3.01
255 256 2.280552 TAGCTCGTTTGGGCCGACT 61.281 57.895 0.00 0.00 0.00 4.18
256 257 2.098831 GTAGCTCGTTTGGGCCGAC 61.099 63.158 0.00 0.00 0.00 4.79
257 258 2.263540 GTAGCTCGTTTGGGCCGA 59.736 61.111 0.00 0.00 0.00 5.54
258 259 2.047655 TGTAGCTCGTTTGGGCCG 60.048 61.111 0.00 0.00 0.00 6.13
259 260 1.302192 TGTGTAGCTCGTTTGGGCC 60.302 57.895 0.00 0.00 0.00 5.80
260 261 0.882927 TGTGTGTAGCTCGTTTGGGC 60.883 55.000 0.00 0.00 0.00 5.36
261 262 1.148310 CTGTGTGTAGCTCGTTTGGG 58.852 55.000 0.00 0.00 0.00 4.12
262 263 0.512952 GCTGTGTGTAGCTCGTTTGG 59.487 55.000 0.00 0.00 40.52 3.28
263 264 0.512952 GGCTGTGTGTAGCTCGTTTG 59.487 55.000 0.00 0.00 43.22 2.93
264 265 0.393077 AGGCTGTGTGTAGCTCGTTT 59.607 50.000 0.00 0.00 43.22 3.60
265 266 1.202582 CTAGGCTGTGTGTAGCTCGTT 59.797 52.381 0.00 0.00 43.22 3.85
266 267 0.811915 CTAGGCTGTGTGTAGCTCGT 59.188 55.000 0.00 0.00 43.22 4.18
267 268 0.526524 GCTAGGCTGTGTGTAGCTCG 60.527 60.000 0.00 0.00 43.22 5.03
268 269 0.179097 GGCTAGGCTGTGTGTAGCTC 60.179 60.000 9.46 0.00 43.22 4.09
269 270 1.617947 GGGCTAGGCTGTGTGTAGCT 61.618 60.000 16.80 0.00 43.22 3.32
270 271 1.153349 GGGCTAGGCTGTGTGTAGC 60.153 63.158 16.80 0.00 42.94 3.58
271 272 0.176680 CTGGGCTAGGCTGTGTGTAG 59.823 60.000 16.80 0.52 0.00 2.74
272 273 1.899437 GCTGGGCTAGGCTGTGTGTA 61.899 60.000 16.80 0.00 0.00 2.90
273 274 3.072476 CTGGGCTAGGCTGTGTGT 58.928 61.111 16.80 0.00 0.00 3.72
274 275 2.437359 GCTGGGCTAGGCTGTGTG 60.437 66.667 16.80 3.59 0.00 3.82
275 276 2.067932 TTTGCTGGGCTAGGCTGTGT 62.068 55.000 16.80 0.00 0.00 3.72
276 277 1.303561 TTTGCTGGGCTAGGCTGTG 60.304 57.895 16.80 7.69 0.00 3.66
277 278 1.001641 CTTTGCTGGGCTAGGCTGT 60.002 57.895 16.80 0.00 0.00 4.40
278 279 0.322816 TTCTTTGCTGGGCTAGGCTG 60.323 55.000 16.80 10.49 0.00 4.85
279 280 0.405585 TTTCTTTGCTGGGCTAGGCT 59.594 50.000 16.80 0.00 0.00 4.58
280 281 1.478631 ATTTCTTTGCTGGGCTAGGC 58.521 50.000 8.00 8.00 0.00 3.93
281 282 2.952310 GGTATTTCTTTGCTGGGCTAGG 59.048 50.000 0.00 0.00 0.00 3.02
282 283 3.891049 AGGTATTTCTTTGCTGGGCTAG 58.109 45.455 0.00 0.00 0.00 3.42
283 284 4.016444 CAAGGTATTTCTTTGCTGGGCTA 58.984 43.478 0.00 0.00 0.00 3.93
284 285 2.827921 CAAGGTATTTCTTTGCTGGGCT 59.172 45.455 0.00 0.00 0.00 5.19
285 286 3.236632 CAAGGTATTTCTTTGCTGGGC 57.763 47.619 0.00 0.00 0.00 5.36
291 292 2.749621 AGAGCGGCAAGGTATTTCTTTG 59.250 45.455 1.45 0.00 36.42 2.77
292 293 3.073274 AGAGCGGCAAGGTATTTCTTT 57.927 42.857 1.45 0.00 0.00 2.52
293 294 2.789409 AGAGCGGCAAGGTATTTCTT 57.211 45.000 1.45 0.00 0.00 2.52
294 295 2.789409 AAGAGCGGCAAGGTATTTCT 57.211 45.000 1.45 0.00 0.00 2.52
295 296 5.163652 ACAAATAAGAGCGGCAAGGTATTTC 60.164 40.000 1.45 0.00 33.48 2.17
296 297 4.705023 ACAAATAAGAGCGGCAAGGTATTT 59.295 37.500 1.45 4.22 33.48 1.40
297 298 4.270008 ACAAATAAGAGCGGCAAGGTATT 58.730 39.130 1.45 0.00 35.76 1.89
298 299 3.886123 ACAAATAAGAGCGGCAAGGTAT 58.114 40.909 1.45 0.00 0.00 2.73
299 300 3.343941 ACAAATAAGAGCGGCAAGGTA 57.656 42.857 1.45 0.00 0.00 3.08
300 301 2.200373 ACAAATAAGAGCGGCAAGGT 57.800 45.000 1.45 0.00 0.00 3.50
301 302 3.575965 AAACAAATAAGAGCGGCAAGG 57.424 42.857 1.45 0.00 0.00 3.61
302 303 3.603770 CGAAAACAAATAAGAGCGGCAAG 59.396 43.478 1.45 0.00 0.00 4.01
303 304 3.251245 TCGAAAACAAATAAGAGCGGCAA 59.749 39.130 1.45 0.00 0.00 4.52
304 305 2.809119 TCGAAAACAAATAAGAGCGGCA 59.191 40.909 1.45 0.00 0.00 5.69
305 306 3.465122 TCGAAAACAAATAAGAGCGGC 57.535 42.857 0.00 0.00 0.00 6.53
306 307 6.741448 TTTTTCGAAAACAAATAAGAGCGG 57.259 33.333 22.41 0.00 0.00 5.52
307 308 7.151256 CGATTTTTCGAAAACAAATAAGAGCG 58.849 34.615 22.41 15.31 34.64 5.03
308 309 6.942767 GCGATTTTTCGAAAACAAATAAGAGC 59.057 34.615 22.41 12.07 34.64 4.09
309 310 7.991736 TGCGATTTTTCGAAAACAAATAAGAG 58.008 30.769 22.41 6.80 34.64 2.85
310 311 7.916128 TGCGATTTTTCGAAAACAAATAAGA 57.084 28.000 22.41 6.35 34.64 2.10
311 312 8.476142 TCTTGCGATTTTTCGAAAACAAATAAG 58.524 29.630 22.41 20.63 34.64 1.73
312 313 8.263269 GTCTTGCGATTTTTCGAAAACAAATAA 58.737 29.630 22.41 13.67 34.64 1.40
313 314 7.356881 CGTCTTGCGATTTTTCGAAAACAAATA 60.357 33.333 22.41 8.54 44.77 1.40
314 315 6.559521 CGTCTTGCGATTTTTCGAAAACAAAT 60.560 34.615 22.41 13.69 44.77 2.32
315 316 5.275510 CGTCTTGCGATTTTTCGAAAACAAA 60.276 36.000 22.41 9.29 44.77 2.83
316 317 4.203361 CGTCTTGCGATTTTTCGAAAACAA 59.797 37.500 22.41 19.75 44.77 2.83
317 318 3.721798 CGTCTTGCGATTTTTCGAAAACA 59.278 39.130 22.41 14.17 44.77 2.83
318 319 3.722289 ACGTCTTGCGATTTTTCGAAAAC 59.278 39.130 22.41 11.78 44.77 2.43
319 320 3.942739 ACGTCTTGCGATTTTTCGAAAA 58.057 36.364 19.08 19.08 44.77 2.29
320 321 3.595709 ACGTCTTGCGATTTTTCGAAA 57.404 38.095 6.47 6.47 44.77 3.46
321 322 4.025896 TGTTACGTCTTGCGATTTTTCGAA 60.026 37.500 0.00 0.00 44.77 3.71
322 323 3.490155 TGTTACGTCTTGCGATTTTTCGA 59.510 39.130 0.00 0.00 44.77 3.71
323 324 3.790058 TGTTACGTCTTGCGATTTTTCG 58.210 40.909 0.00 0.00 44.77 3.46
324 325 9.646336 ATTATATGTTACGTCTTGCGATTTTTC 57.354 29.630 0.00 0.00 44.77 2.29
328 329 8.706035 GGTTATTATATGTTACGTCTTGCGATT 58.294 33.333 0.00 0.00 44.77 3.34
329 330 7.868922 TGGTTATTATATGTTACGTCTTGCGAT 59.131 33.333 0.00 0.00 44.77 4.58
330 331 7.201835 TGGTTATTATATGTTACGTCTTGCGA 58.798 34.615 0.00 0.00 44.77 5.10
332 333 7.095355 CCCTGGTTATTATATGTTACGTCTTGC 60.095 40.741 0.00 0.00 0.00 4.01
333 334 8.145767 TCCCTGGTTATTATATGTTACGTCTTG 58.854 37.037 0.00 0.00 0.00 3.02
334 335 8.253867 TCCCTGGTTATTATATGTTACGTCTT 57.746 34.615 0.00 0.00 0.00 3.01
335 336 7.844493 TCCCTGGTTATTATATGTTACGTCT 57.156 36.000 0.00 0.00 0.00 4.18
336 337 8.768019 GTTTCCCTGGTTATTATATGTTACGTC 58.232 37.037 0.00 0.00 0.00 4.34
337 338 7.439056 CGTTTCCCTGGTTATTATATGTTACGT 59.561 37.037 0.00 0.00 0.00 3.57
338 339 7.439056 ACGTTTCCCTGGTTATTATATGTTACG 59.561 37.037 0.00 0.00 0.00 3.18
339 340 8.553696 CACGTTTCCCTGGTTATTATATGTTAC 58.446 37.037 0.00 0.00 0.00 2.50
340 341 8.484575 TCACGTTTCCCTGGTTATTATATGTTA 58.515 33.333 0.00 0.00 0.00 2.41
341 342 7.340256 TCACGTTTCCCTGGTTATTATATGTT 58.660 34.615 0.00 0.00 0.00 2.71
342 343 6.891388 TCACGTTTCCCTGGTTATTATATGT 58.109 36.000 0.00 0.00 0.00 2.29
343 344 7.979444 ATCACGTTTCCCTGGTTATTATATG 57.021 36.000 0.00 0.00 0.00 1.78
344 345 7.386848 CGAATCACGTTTCCCTGGTTATTATAT 59.613 37.037 0.00 0.00 37.22 0.86
345 346 6.702723 CGAATCACGTTTCCCTGGTTATTATA 59.297 38.462 0.00 0.00 37.22 0.98
346 347 5.526111 CGAATCACGTTTCCCTGGTTATTAT 59.474 40.000 0.00 0.00 37.22 1.28
347 348 4.871557 CGAATCACGTTTCCCTGGTTATTA 59.128 41.667 0.00 0.00 37.22 0.98
348 349 3.687698 CGAATCACGTTTCCCTGGTTATT 59.312 43.478 0.00 0.00 37.22 1.40
349 350 3.267483 CGAATCACGTTTCCCTGGTTAT 58.733 45.455 0.00 0.00 37.22 1.89
350 351 2.690786 CGAATCACGTTTCCCTGGTTA 58.309 47.619 0.00 0.00 37.22 2.85
351 352 1.519408 CGAATCACGTTTCCCTGGTT 58.481 50.000 0.00 0.00 37.22 3.67
352 353 0.953960 GCGAATCACGTTTCCCTGGT 60.954 55.000 0.00 0.00 44.60 4.00
353 354 0.673644 AGCGAATCACGTTTCCCTGG 60.674 55.000 0.00 0.00 44.60 4.45
354 355 0.443869 CAGCGAATCACGTTTCCCTG 59.556 55.000 1.40 1.40 44.60 4.45
355 356 1.298859 GCAGCGAATCACGTTTCCCT 61.299 55.000 0.00 0.00 44.60 4.20
356 357 1.134694 GCAGCGAATCACGTTTCCC 59.865 57.895 0.00 0.00 44.60 3.97
357 358 0.447801 ATGCAGCGAATCACGTTTCC 59.552 50.000 0.00 0.00 44.60 3.13
358 359 2.694043 GTATGCAGCGAATCACGTTTC 58.306 47.619 0.00 0.00 44.60 2.78
458 459 3.638484 GGGTGGACGAATGTTTTTCTTG 58.362 45.455 0.00 0.00 0.00 3.02
554 556 6.037172 CGTAGGTTTGGGTAAATGAATGAGAG 59.963 42.308 0.00 0.00 0.00 3.20
594 596 6.831353 CAGATTCCGATGTAGGAGGAGTATAT 59.169 42.308 0.00 0.00 41.98 0.86
597 599 4.399219 CAGATTCCGATGTAGGAGGAGTA 58.601 47.826 0.00 0.00 41.98 2.59
598 600 3.226777 CAGATTCCGATGTAGGAGGAGT 58.773 50.000 0.00 0.00 41.98 3.85
599 601 2.560542 CCAGATTCCGATGTAGGAGGAG 59.439 54.545 0.00 0.00 41.98 3.69
600 602 2.177016 TCCAGATTCCGATGTAGGAGGA 59.823 50.000 0.00 0.00 41.98 3.71
601 603 2.598565 TCCAGATTCCGATGTAGGAGG 58.401 52.381 0.00 0.00 41.98 4.30
602 604 3.056250 CCATCCAGATTCCGATGTAGGAG 60.056 52.174 9.36 0.00 41.98 3.69
603 605 2.899900 CCATCCAGATTCCGATGTAGGA 59.100 50.000 9.36 0.00 38.79 2.94
604 606 2.899900 TCCATCCAGATTCCGATGTAGG 59.100 50.000 9.36 0.00 35.17 3.18
605 607 3.056250 CCTCCATCCAGATTCCGATGTAG 60.056 52.174 9.36 4.62 35.17 2.74
606 608 2.899900 CCTCCATCCAGATTCCGATGTA 59.100 50.000 9.36 0.00 35.17 2.29
622 624 6.270463 TGAGTAATGTTAACTGGTAACCTCCA 59.730 38.462 12.73 0.00 41.35 3.86
648 651 4.293648 CGAGGGTGTGTGCACGGA 62.294 66.667 13.13 0.00 46.13 4.69
1096 1161 3.873883 GATCCGTCGCCGTCGTCT 61.874 66.667 2.78 0.00 36.96 4.18
1366 1431 2.045131 ACTACACGGAGAGGGCGAC 61.045 63.158 0.00 0.00 0.00 5.19
1394 1459 2.023461 CGACCGAGCGCACTAGAG 59.977 66.667 11.47 0.00 0.00 2.43
1395 1460 2.249557 GAACGACCGAGCGCACTAGA 62.250 60.000 11.47 0.00 33.86 2.43
1532 1597 4.309933 AGCAGCCAAATTCAAAAACTAGC 58.690 39.130 0.00 0.00 0.00 3.42
1582 1647 4.077188 GCTCGGCACTTGTGCGTC 62.077 66.667 17.87 5.91 35.24 5.19
1764 1829 6.539173 TCCCACTCAAAATAAAGCAAGTCTA 58.461 36.000 0.00 0.00 0.00 2.59
1775 1840 5.710099 CCAAAGTAGCTTCCCACTCAAAATA 59.290 40.000 0.00 0.00 0.00 1.40
1797 1862 8.163408 CCATATTCATTCCAAATAGTACCTCCA 58.837 37.037 0.00 0.00 0.00 3.86
1887 1952 2.618053 CCCGCCAGAACTAACTAGTTG 58.382 52.381 18.56 10.41 45.84 3.16
1890 1955 1.192428 ACCCCGCCAGAACTAACTAG 58.808 55.000 0.00 0.00 0.00 2.57
1891 1956 1.648116 AACCCCGCCAGAACTAACTA 58.352 50.000 0.00 0.00 0.00 2.24
1905 1970 0.696501 TTGAGCAGTTCCCTAACCCC 59.303 55.000 0.00 0.00 36.15 4.95
1913 1978 1.452108 CCCGGGATTGAGCAGTTCC 60.452 63.158 18.48 0.00 0.00 3.62
1944 2009 9.865321 AATAAGTGACAGATTTTCCATCATTTG 57.135 29.630 0.00 0.00 0.00 2.32
1947 2012 8.812513 TGAATAAGTGACAGATTTTCCATCAT 57.187 30.769 0.00 0.00 0.00 2.45
1948 2013 8.634335 TTGAATAAGTGACAGATTTTCCATCA 57.366 30.769 0.00 0.00 0.00 3.07
1951 2016 9.076781 TGAATTGAATAAGTGACAGATTTTCCA 57.923 29.630 0.00 0.00 0.00 3.53
2029 2094 8.840321 GCAGCATTCTAGTATTTCTAAAATGGA 58.160 33.333 0.00 0.00 37.48 3.41
2109 2264 3.517500 AGTCCAGGAAAGAAGAGATGACC 59.482 47.826 0.00 0.00 0.00 4.02
2277 2435 4.634184 TGACTCGCTGTAAGGAACTATC 57.366 45.455 0.00 0.00 38.49 2.08
2508 2668 2.619074 CCCTCCCTCACCTCATCAAAAC 60.619 54.545 0.00 0.00 0.00 2.43
2586 2746 2.480037 GTGGCCTTTTTGCAACAATAGC 59.520 45.455 3.32 5.30 35.16 2.97
2591 2751 1.277557 AGTTGTGGCCTTTTTGCAACA 59.722 42.857 3.32 0.00 43.34 3.33
2661 2821 4.573607 CAGTTGGTGATGATGGTGTATCTG 59.426 45.833 0.00 0.00 36.71 2.90
2665 2825 3.582647 ACTCAGTTGGTGATGATGGTGTA 59.417 43.478 0.00 0.00 33.51 2.90
2674 2834 7.181125 ACTCCTATAAAAGACTCAGTTGGTGAT 59.819 37.037 0.00 0.00 33.51 3.06
2707 2867 8.425491 CAACTAACTATACATATTAGCACGCAC 58.575 37.037 0.00 0.00 30.45 5.34
2708 2868 8.354426 TCAACTAACTATACATATTAGCACGCA 58.646 33.333 0.00 0.00 30.45 5.24
2884 3210 2.693069 CTCACAAGACCCACATCAGTC 58.307 52.381 0.00 0.00 0.00 3.51
3065 3391 5.046448 AGCCAATCAGAGCTATAATCTCCAG 60.046 44.000 0.00 0.00 37.64 3.86
3106 3432 5.126067 TCAAACTGCACTCTTTTCTTAGCT 58.874 37.500 0.00 0.00 0.00 3.32
3343 3669 3.734293 GCTTCAGGAAATGCTGAATCTGC 60.734 47.826 16.21 12.89 38.66 4.26
3408 3734 3.696051 GCCAAGCTCCAGTAAAATCATGA 59.304 43.478 0.00 0.00 0.00 3.07
3508 3834 0.179936 GGTGATGCTTGGAGAGGAGG 59.820 60.000 0.00 0.00 0.00 4.30
3618 3944 4.168922 CACATCAGTGTTCAATGTGCAT 57.831 40.909 9.08 0.00 42.51 3.96
3677 4004 5.724854 ACCTAAGAGTTCAAGGCTATAACCA 59.275 40.000 7.94 0.00 33.42 3.67
3749 4080 4.866508 CATGAGATGCCAAGCCATTAAT 57.133 40.909 0.00 0.00 0.00 1.40
3785 4116 3.516578 GACAGGAGAACCCTTGTCG 57.483 57.895 0.00 0.00 44.85 4.35
3884 4215 6.928348 TCATTAATATGTACTCCACCGGAT 57.072 37.500 9.46 0.00 33.34 4.18
3956 4287 1.754226 TGGCAGAAAACTGTTGTTCCC 59.246 47.619 0.00 0.27 34.96 3.97
3983 4314 5.075858 TCACAAATTCTGGCAATTCCATC 57.924 39.130 0.00 0.00 45.50 3.51
4003 4334 6.179756 TCAAAAACTAGGCTGAGCATAATCA 58.820 36.000 6.82 0.00 0.00 2.57
4004 4335 6.238593 CCTCAAAAACTAGGCTGAGCATAATC 60.239 42.308 6.82 0.00 35.09 1.75
4242 4575 7.279090 CACAATTTTCATGCCATATCAACATGT 59.721 33.333 0.00 0.00 41.51 3.21
4249 4582 5.353938 ACTGCACAATTTTCATGCCATATC 58.646 37.500 0.00 0.00 38.63 1.63
4281 4621 4.186159 AGAAATAAAGCATGCAACATGCC 58.814 39.130 24.69 10.72 44.23 4.40
4282 4622 7.473027 AATAGAAATAAAGCATGCAACATGC 57.527 32.000 21.98 21.83 45.29 4.06
4375 4715 3.135167 AGTTTTCCTTGGTGTCGACCTTA 59.865 43.478 14.12 0.00 43.58 2.69
4394 4734 5.893824 AGAAGTTGGAACTGGAAATGAAGTT 59.106 36.000 0.00 0.00 39.66 2.66
4468 4808 1.204941 TGCCTCGACTTAGAAGCTTCC 59.795 52.381 22.81 6.22 0.00 3.46
4496 4836 8.109634 ACCATTATCAAACAATCTGGAAGTAGT 58.890 33.333 0.00 0.00 33.76 2.73
4537 4877 0.815734 CTTCATCACGAGTACCCGGT 59.184 55.000 0.75 0.00 0.00 5.28
4580 4920 7.355778 GTGTGTAAAGAAGAAATCTCACCTTG 58.644 38.462 0.00 0.00 37.42 3.61
4729 5069 1.310933 GGAGCACTCATTGGCTGGTG 61.311 60.000 0.00 0.00 41.22 4.17
4806 5146 7.573710 TCTGGTGTATCTAAATTACTGCCATT 58.426 34.615 0.00 0.00 0.00 3.16
4871 5211 4.442706 AGGGACTGTAGATAATGTTTGCG 58.557 43.478 0.00 0.00 37.18 4.85
5305 5652 7.661437 AGCACTGAGACAGTTCAATATTGTTAA 59.339 33.333 14.97 0.55 42.59 2.01
5346 5693 5.026121 ACAGATTTATCTCCACTCTGGTCA 58.974 41.667 0.00 0.00 39.03 4.02
5352 5699 3.471680 GGGCACAGATTTATCTCCACTC 58.528 50.000 0.00 0.00 34.22 3.51
5512 5859 4.899352 ATCACTCTAAAGCAAGTCAGGT 57.101 40.909 0.00 0.00 0.00 4.00
5513 5860 6.166279 TGTTATCACTCTAAAGCAAGTCAGG 58.834 40.000 0.00 0.00 0.00 3.86
5515 5862 7.615403 AGATGTTATCACTCTAAAGCAAGTCA 58.385 34.615 0.00 0.00 0.00 3.41
5595 5968 3.291584 TCACCATGGCTGTTTTGTTACA 58.708 40.909 13.04 0.00 0.00 2.41
5601 5974 2.584835 TAGCTCACCATGGCTGTTTT 57.415 45.000 13.04 0.00 39.31 2.43
5602 5975 2.814805 ATAGCTCACCATGGCTGTTT 57.185 45.000 13.04 0.00 39.31 2.83
5603 5976 2.814805 AATAGCTCACCATGGCTGTT 57.185 45.000 13.04 4.72 39.31 3.16
5604 5977 2.814805 AAATAGCTCACCATGGCTGT 57.185 45.000 13.04 0.00 39.31 4.40
5605 5978 5.182001 GGTAATAAATAGCTCACCATGGCTG 59.818 44.000 13.04 9.79 39.31 4.85
5606 5979 5.163099 TGGTAATAAATAGCTCACCATGGCT 60.163 40.000 13.04 5.45 41.92 4.75
5628 6001 4.645535 TGACTCTTGATGACTTCCTTTGG 58.354 43.478 0.00 0.00 0.00 3.28
5656 6029 9.968743 CATAAGTCTTCGTATTTGTAACCTTTC 57.031 33.333 0.00 0.00 0.00 2.62
5660 6033 9.578439 ACTACATAAGTCTTCGTATTTGTAACC 57.422 33.333 0.00 0.00 30.33 2.85
5675 6048 8.861101 GTCACATGTTTGTCTACTACATAAGTC 58.139 37.037 0.00 0.00 38.10 3.01
5677 6050 8.988064 AGTCACATGTTTGTCTACTACATAAG 57.012 34.615 0.00 0.00 38.10 1.73
5678 6051 9.772973 AAAGTCACATGTTTGTCTACTACATAA 57.227 29.630 0.00 0.00 38.10 1.90
5679 6052 9.772973 AAAAGTCACATGTTTGTCTACTACATA 57.227 29.630 0.00 0.00 38.10 2.29
5680 6053 8.677148 AAAAGTCACATGTTTGTCTACTACAT 57.323 30.769 0.00 0.00 38.10 2.29
5681 6054 8.500753 AAAAAGTCACATGTTTGTCTACTACA 57.499 30.769 0.00 0.00 32.34 2.74
5753 6760 1.804748 GCTACTGCTGGTTGGTTACAC 59.195 52.381 0.00 0.00 36.03 2.90
5794 6804 3.067106 CAACATCGCCTAACTTCACTGT 58.933 45.455 0.00 0.00 0.00 3.55
5795 6805 3.067106 ACAACATCGCCTAACTTCACTG 58.933 45.455 0.00 0.00 0.00 3.66
5796 6806 3.326747 GACAACATCGCCTAACTTCACT 58.673 45.455 0.00 0.00 0.00 3.41
5797 6807 2.415512 GGACAACATCGCCTAACTTCAC 59.584 50.000 0.00 0.00 0.00 3.18
5798 6808 2.037902 TGGACAACATCGCCTAACTTCA 59.962 45.455 0.00 0.00 0.00 3.02
5799 6809 2.695359 TGGACAACATCGCCTAACTTC 58.305 47.619 0.00 0.00 0.00 3.01
5800 6810 2.851263 TGGACAACATCGCCTAACTT 57.149 45.000 0.00 0.00 0.00 2.66
5802 6812 1.670811 CCATGGACAACATCGCCTAAC 59.329 52.381 5.56 0.00 37.84 2.34
5804 6814 0.908910 ACCATGGACAACATCGCCTA 59.091 50.000 21.47 0.00 37.84 3.93
5805 6815 0.038166 AACCATGGACAACATCGCCT 59.962 50.000 21.47 0.00 37.84 5.52
5806 6816 1.745232 TAACCATGGACAACATCGCC 58.255 50.000 21.47 0.00 37.84 5.54
5840 7247 5.303971 AGCCATGAATAATGAGACAGTAGC 58.696 41.667 0.00 0.00 38.72 3.58
5887 7296 7.415095 CCATCATGCTGAAAATAAGTTTACCGA 60.415 37.037 0.00 0.00 0.00 4.69
5888 7297 6.692681 CCATCATGCTGAAAATAAGTTTACCG 59.307 38.462 0.00 0.00 0.00 4.02
5913 7322 5.047377 TGTTGAGGGGATGCTTAACAAAATC 60.047 40.000 0.00 0.00 0.00 2.17
6106 7516 5.011125 AGCCATCATAAGCGTGAATAGTAGT 59.989 40.000 0.00 0.00 0.00 2.73
6251 7661 0.035439 ACATTACCCGTTGGCAGAGG 60.035 55.000 3.64 3.64 33.59 3.69
6294 7704 9.760077 AAATTACTCTACAAATAGTATGACGGG 57.240 33.333 0.00 0.00 30.93 5.28
6324 7778 7.611467 AGAGACAATTAATGCCACACATCTAAA 59.389 33.333 0.00 0.00 38.34 1.85
6347 7801 3.993081 CCAGAAGACTGCAGTACAAAGAG 59.007 47.826 21.73 6.77 42.25 2.85
6355 7809 1.550327 TCGATCCAGAAGACTGCAGT 58.450 50.000 21.88 21.88 42.25 4.40
6357 7811 2.100418 CTGATCGATCCAGAAGACTGCA 59.900 50.000 22.31 0.00 42.25 4.41
6565 8019 0.693049 AACTGAATCCTTCCCAGCGT 59.307 50.000 0.00 0.00 0.00 5.07
6668 8122 4.946784 ATAACAAACGCTTTGCTCCTAG 57.053 40.909 9.44 0.00 44.39 3.02
6676 8130 3.434299 CGACCTGGTATAACAAACGCTTT 59.566 43.478 0.00 0.00 0.00 3.51
6681 8135 3.124636 CACTGCGACCTGGTATAACAAAC 59.875 47.826 0.00 0.00 0.00 2.93
6704 8158 4.710324 TCTTGGGGCCGTTAATATTAGTG 58.290 43.478 0.00 0.00 0.00 2.74
6729 8184 2.023888 ACCTAGATATCATAGCGCCCCT 60.024 50.000 2.29 0.00 0.00 4.79
6733 8188 8.675504 TCTAGTTAAACCTAGATATCATAGCGC 58.324 37.037 0.00 0.00 38.76 5.92
6985 8444 3.861276 ACATGCACTGTCAATCAATGG 57.139 42.857 0.00 0.00 29.94 3.16
7040 8502 9.406113 CAGACAGACAGATAGATATGATATGGA 57.594 37.037 0.00 0.00 0.00 3.41
7045 8507 9.761504 CAAAACAGACAGACAGATAGATATGAT 57.238 33.333 0.00 0.00 0.00 2.45
7046 8508 8.200120 CCAAAACAGACAGACAGATAGATATGA 58.800 37.037 0.00 0.00 0.00 2.15
7054 8516 3.213206 TGCCAAAACAGACAGACAGAT 57.787 42.857 0.00 0.00 0.00 2.90
7055 8517 2.708216 TGCCAAAACAGACAGACAGA 57.292 45.000 0.00 0.00 0.00 3.41
7056 8518 3.567164 AGAATGCCAAAACAGACAGACAG 59.433 43.478 0.00 0.00 0.00 3.51
7057 8519 3.554934 AGAATGCCAAAACAGACAGACA 58.445 40.909 0.00 0.00 0.00 3.41
7058 8520 5.412594 TCATAGAATGCCAAAACAGACAGAC 59.587 40.000 0.00 0.00 0.00 3.51
7059 8521 5.559770 TCATAGAATGCCAAAACAGACAGA 58.440 37.500 0.00 0.00 0.00 3.41
7060 8522 5.885230 TCATAGAATGCCAAAACAGACAG 57.115 39.130 0.00 0.00 0.00 3.51
7207 8673 0.609406 GGCCAGGGGAGAAGAACAAC 60.609 60.000 0.00 0.00 0.00 3.32
7261 8744 0.099968 CAGATTGATTGCAGGGCGTG 59.900 55.000 2.14 2.14 0.00 5.34
7275 8758 3.262660 TGAGCAGTCAAGATGGACAGATT 59.737 43.478 0.00 0.00 40.29 2.40
7383 8870 2.071540 TGCAGTGCAGATCTTTTCTCG 58.928 47.619 15.37 0.00 33.32 4.04
7402 8889 1.086067 CCGGTATGAGCAGTGCAGTG 61.086 60.000 19.20 17.56 0.00 3.66
7403 8890 1.219124 CCGGTATGAGCAGTGCAGT 59.781 57.895 19.20 4.99 0.00 4.40
7408 8895 4.800914 GCAAGATATTCCGGTATGAGCAGT 60.801 45.833 0.00 0.00 0.00 4.40
7410 8897 3.664107 GCAAGATATTCCGGTATGAGCA 58.336 45.455 0.00 0.00 0.00 4.26
7411 8898 2.668457 CGCAAGATATTCCGGTATGAGC 59.332 50.000 0.00 0.00 43.02 4.26
7412 8899 2.668457 GCGCAAGATATTCCGGTATGAG 59.332 50.000 0.30 0.00 43.02 2.90
7413 8900 2.036604 TGCGCAAGATATTCCGGTATGA 59.963 45.455 8.16 0.00 43.02 2.15
7415 8902 2.037251 ACTGCGCAAGATATTCCGGTAT 59.963 45.455 13.05 0.00 43.02 2.73
7416 8903 1.411246 ACTGCGCAAGATATTCCGGTA 59.589 47.619 13.05 0.00 43.02 4.02
7417 8904 0.178068 ACTGCGCAAGATATTCCGGT 59.822 50.000 13.05 0.00 43.02 5.28
7418 8905 1.299541 AACTGCGCAAGATATTCCGG 58.700 50.000 13.05 0.00 43.02 5.14
7419 8906 2.286418 GGAAACTGCGCAAGATATTCCG 60.286 50.000 13.05 0.00 43.02 4.30
7547 9040 3.244249 GGATCTTTCAGGATAAGGGGTCG 60.244 52.174 0.00 0.00 0.00 4.79
7549 9042 3.056832 GGGATCTTTCAGGATAAGGGGT 58.943 50.000 0.00 0.00 0.00 4.95
7599 9092 1.227380 CCTAGGATCGTGCTGTGCC 60.227 63.158 1.05 0.00 0.00 5.01
7650 9143 2.250485 CCTTGTCGTCGTCGTCGT 59.750 61.111 11.41 0.00 38.33 4.34
7739 9234 1.357137 TCCATTAGCCGCCATGGATA 58.643 50.000 18.40 0.00 43.44 2.59



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.