Multiple sequence alignment - TraesCS2D01G503500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G503500 chr2D 100.000 6022 0 0 1 6022 598285997 598279976 0.000000e+00 11121.0
1 TraesCS2D01G503500 chr2D 87.204 2024 165 36 5 1984 642051309 642049336 0.000000e+00 2217.0
2 TraesCS2D01G503500 chr2D 80.038 2084 326 56 3982 5991 642053604 642055671 0.000000e+00 1461.0
3 TraesCS2D01G503500 chr2D 80.019 2082 329 56 3982 5991 598293544 598295610 0.000000e+00 1459.0
4 TraesCS2D01G503500 chr2D 86.089 496 62 7 2935 3427 633454667 633454176 1.490000e-145 527.0
5 TraesCS2D01G503500 chr2D 85.135 518 66 10 2916 3427 551459835 551460347 2.490000e-143 520.0
6 TraesCS2D01G503500 chr2D 76.882 744 117 28 1058 1771 642052334 642053052 2.650000e-98 370.0
7 TraesCS2D01G503500 chr2D 76.090 757 125 28 1055 1781 598292316 598293046 1.610000e-90 344.0
8 TraesCS2D01G503500 chr2D 89.535 258 23 3 3611 3864 341646623 341646880 2.090000e-84 324.0
9 TraesCS2D01G503500 chr2D 89.062 256 25 3 3611 3864 610364838 610364584 1.260000e-81 315.0
10 TraesCS2D01G503500 chr2D 93.750 128 8 0 3462 3589 157345079 157344952 6.160000e-45 193.0
11 TraesCS2D01G503500 chr2D 92.126 127 10 0 3463 3589 5465826 5465700 4.800000e-41 180.0
12 TraesCS2D01G503500 chr2D 82.028 217 34 4 3977 4188 642049017 642048801 4.800000e-41 180.0
13 TraesCS2D01G503500 chr2D 88.608 79 8 1 3879 3956 642049297 642049219 1.790000e-15 95.3
14 TraesCS2D01G503500 chr2A 85.786 1590 204 14 4082 5657 766966841 766968422 0.000000e+00 1664.0
15 TraesCS2D01G503500 chr2A 80.000 2085 338 49 3982 6002 767001733 767003802 0.000000e+00 1467.0
16 TraesCS2D01G503500 chr2A 77.949 2009 363 50 4012 5965 769956006 769957989 0.000000e+00 1182.0
17 TraesCS2D01G503500 chr2A 91.109 866 41 16 2 861 766999425 766998590 0.000000e+00 1140.0
18 TraesCS2D01G503500 chr2A 76.313 1904 370 55 4069 5919 769653751 769655626 0.000000e+00 942.0
19 TraesCS2D01G503500 chr2A 88.817 617 42 13 78 671 766885438 766884826 0.000000e+00 732.0
20 TraesCS2D01G503500 chr2A 85.380 513 66 9 2918 3427 26614342 26613836 1.920000e-144 523.0
21 TraesCS2D01G503500 chr2A 76.966 725 116 28 1055 1749 767000440 767001143 3.430000e-97 366.0
22 TraesCS2D01G503500 chr2A 84.967 306 40 4 1444 1749 766892269 766892568 7.580000e-79 305.0
23 TraesCS2D01G503500 chr2A 82.317 328 34 7 1092 1395 766884827 766884500 4.630000e-66 263.0
24 TraesCS2D01G503500 chr2A 90.164 61 6 0 615 675 766897961 766898021 5.000000e-11 80.5
25 TraesCS2D01G503500 chr5A 87.776 499 58 3 2927 3423 128437035 128437532 1.130000e-161 580.0
26 TraesCS2D01G503500 chr5A 86.028 501 61 8 2930 3427 305331272 305331766 4.130000e-146 529.0
27 TraesCS2D01G503500 chr7A 87.026 501 58 7 2930 3427 117353020 117353516 5.270000e-155 558.0
28 TraesCS2D01G503500 chr2B 85.299 551 62 13 2289 2822 36808783 36808235 8.820000e-153 551.0
29 TraesCS2D01G503500 chr2B 78.883 824 151 13 4058 4868 790890980 790890167 2.470000e-148 536.0
30 TraesCS2D01G503500 chr2B 83.303 545 65 13 2286 2820 784502729 784503257 4.220000e-131 479.0
31 TraesCS2D01G503500 chr2B 83.178 535 56 16 2290 2805 402514407 402513888 5.500000e-125 459.0
32 TraesCS2D01G503500 chr2B 82.385 545 69 14 2286 2820 784437880 784438407 3.310000e-122 449.0
33 TraesCS2D01G503500 chr2B 75.394 825 134 32 1025 1820 790892885 790892101 9.670000e-88 335.0
34 TraesCS2D01G503500 chr2B 86.458 96 13 0 618 713 799628248 799628153 8.250000e-19 106.0
35 TraesCS2D01G503500 chr2B 83.333 84 12 1 2826 2909 566376405 566376486 6.470000e-10 76.8
36 TraesCS2D01G503500 chr1A 84.964 552 65 7 2286 2820 98233022 98233572 1.480000e-150 544.0
37 TraesCS2D01G503500 chr1A 88.760 258 25 4 3611 3864 546806010 546806267 4.530000e-81 313.0
38 TraesCS2D01G503500 chr1A 92.126 127 10 0 3463 3589 291682942 291683068 4.800000e-41 180.0
39 TraesCS2D01G503500 chr1A 91.339 127 11 0 3463 3589 293314791 293314917 2.230000e-39 174.0
40 TraesCS2D01G503500 chr1A 80.645 155 26 4 2032 2184 22365867 22365715 3.810000e-22 117.0
41 TraesCS2D01G503500 chr1A 81.967 122 19 3 2032 2153 306979912 306979794 3.840000e-17 100.0
42 TraesCS2D01G503500 chr4D 85.742 512 68 5 2918 3427 484350895 484351403 2.470000e-148 536.0
43 TraesCS2D01G503500 chr4D 89.412 255 25 2 3611 3863 434173340 434173594 2.710000e-83 320.0
44 TraesCS2D01G503500 chr4D 89.062 256 26 2 3611 3864 299802046 299801791 3.500000e-82 316.0
45 TraesCS2D01G503500 chr3A 85.885 503 63 7 2928 3427 197858272 197858769 4.130000e-146 529.0
46 TraesCS2D01G503500 chr4A 81.900 663 74 23 2290 2916 710752579 710753231 8.950000e-143 518.0
47 TraesCS2D01G503500 chrUn 84.990 513 70 7 2918 3427 277594817 277594309 1.160000e-141 514.0
48 TraesCS2D01G503500 chrUn 89.062 256 26 2 3611 3864 24296406 24296151 3.500000e-82 316.0
49 TraesCS2D01G503500 chr3B 82.867 572 64 18 2248 2805 586134381 586133830 3.260000e-132 483.0
50 TraesCS2D01G503500 chr6B 81.463 615 79 21 2248 2845 718289045 718289641 7.060000e-129 472.0
51 TraesCS2D01G503500 chr6B 88.672 256 27 2 3611 3864 565807958 565807703 1.630000e-80 311.0
52 TraesCS2D01G503500 chr6B 81.250 144 21 5 2046 2184 706133277 706133135 1.770000e-20 111.0
53 TraesCS2D01G503500 chr6B 82.292 96 9 5 2040 2135 658562975 658562888 6.470000e-10 76.8
54 TraesCS2D01G503500 chr5B 80.562 463 60 10 2483 2916 25286656 25286195 4.500000e-86 329.0
55 TraesCS2D01G503500 chr5B 81.977 172 19 6 2284 2451 25286805 25286642 1.050000e-27 135.0
56 TraesCS2D01G503500 chr6A 89.453 256 25 2 3611 3864 252837816 252838071 7.530000e-84 322.0
57 TraesCS2D01G503500 chr6A 85.161 155 19 3 2032 2184 15552703 15552855 8.080000e-34 156.0
58 TraesCS2D01G503500 chr3D 88.672 256 27 2 3611 3864 12131302 12131557 1.630000e-80 311.0
59 TraesCS2D01G503500 chr1D 93.701 127 8 0 3463 3589 465797594 465797468 2.220000e-44 191.0
60 TraesCS2D01G503500 chr1D 92.857 126 9 0 3464 3589 148520358 148520483 3.710000e-42 183.0
61 TraesCS2D01G503500 chr1D 85.897 156 16 6 2032 2184 193502742 193502590 1.740000e-35 161.0
62 TraesCS2D01G503500 chr6D 92.126 127 10 0 3463 3589 367030182 367030308 4.800000e-41 180.0
63 TraesCS2D01G503500 chr6D 91.339 127 11 0 3463 3589 208851494 208851620 2.230000e-39 174.0
64 TraesCS2D01G503500 chr5D 91.339 127 11 0 3463 3589 239194514 239194388 2.230000e-39 174.0
65 TraesCS2D01G503500 chr1B 85.256 156 17 6 2032 2184 268398352 268398200 8.080000e-34 156.0
66 TraesCS2D01G503500 chr1B 81.034 116 20 2 2037 2152 539920760 539920647 2.310000e-14 91.6
67 TraesCS2D01G503500 chr7D 90.196 51 3 2 2317 2365 626261923 626261973 1.400000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G503500 chr2D 598279976 598285997 6021 True 11121.000000 11121 100.000000 1 6022 1 chr2D.!!$R3 6021
1 TraesCS2D01G503500 chr2D 642052334 642055671 3337 False 915.500000 1461 78.460000 1058 5991 2 chr2D.!!$F4 4933
2 TraesCS2D01G503500 chr2D 598292316 598295610 3294 False 901.500000 1459 78.054500 1055 5991 2 chr2D.!!$F3 4936
3 TraesCS2D01G503500 chr2D 642048801 642051309 2508 True 830.766667 2217 85.946667 5 4188 3 chr2D.!!$R6 4183
4 TraesCS2D01G503500 chr2D 551459835 551460347 512 False 520.000000 520 85.135000 2916 3427 1 chr2D.!!$F2 511
5 TraesCS2D01G503500 chr2A 766966841 766968422 1581 False 1664.000000 1664 85.786000 4082 5657 1 chr2A.!!$F3 1575
6 TraesCS2D01G503500 chr2A 769956006 769957989 1983 False 1182.000000 1182 77.949000 4012 5965 1 chr2A.!!$F5 1953
7 TraesCS2D01G503500 chr2A 766998590 766999425 835 True 1140.000000 1140 91.109000 2 861 1 chr2A.!!$R2 859
8 TraesCS2D01G503500 chr2A 769653751 769655626 1875 False 942.000000 942 76.313000 4069 5919 1 chr2A.!!$F4 1850
9 TraesCS2D01G503500 chr2A 767000440 767003802 3362 False 916.500000 1467 78.483000 1055 6002 2 chr2A.!!$F6 4947
10 TraesCS2D01G503500 chr2A 26613836 26614342 506 True 523.000000 523 85.380000 2918 3427 1 chr2A.!!$R1 509
11 TraesCS2D01G503500 chr2A 766884500 766885438 938 True 497.500000 732 85.567000 78 1395 2 chr2A.!!$R3 1317
12 TraesCS2D01G503500 chr2B 36808235 36808783 548 True 551.000000 551 85.299000 2289 2822 1 chr2B.!!$R1 533
13 TraesCS2D01G503500 chr2B 784502729 784503257 528 False 479.000000 479 83.303000 2286 2820 1 chr2B.!!$F3 534
14 TraesCS2D01G503500 chr2B 402513888 402514407 519 True 459.000000 459 83.178000 2290 2805 1 chr2B.!!$R2 515
15 TraesCS2D01G503500 chr2B 784437880 784438407 527 False 449.000000 449 82.385000 2286 2820 1 chr2B.!!$F2 534
16 TraesCS2D01G503500 chr2B 790890167 790892885 2718 True 435.500000 536 77.138500 1025 4868 2 chr2B.!!$R4 3843
17 TraesCS2D01G503500 chr1A 98233022 98233572 550 False 544.000000 544 84.964000 2286 2820 1 chr1A.!!$F1 534
18 TraesCS2D01G503500 chr4D 484350895 484351403 508 False 536.000000 536 85.742000 2918 3427 1 chr4D.!!$F2 509
19 TraesCS2D01G503500 chr4A 710752579 710753231 652 False 518.000000 518 81.900000 2290 2916 1 chr4A.!!$F1 626
20 TraesCS2D01G503500 chrUn 277594309 277594817 508 True 514.000000 514 84.990000 2918 3427 1 chrUn.!!$R2 509
21 TraesCS2D01G503500 chr3B 586133830 586134381 551 True 483.000000 483 82.867000 2248 2805 1 chr3B.!!$R1 557
22 TraesCS2D01G503500 chr6B 718289045 718289641 596 False 472.000000 472 81.463000 2248 2845 1 chr6B.!!$F1 597
23 TraesCS2D01G503500 chr5B 25286195 25286805 610 True 232.000000 329 81.269500 2284 2916 2 chr5B.!!$R1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
809 845 1.352352 ACATCCACTAAACAGGCAGCT 59.648 47.619 0.00 0.0 0.00 4.24 F
1565 1638 0.101399 CAAGCAGTCTACGGCGAGAT 59.899 55.000 16.62 0.0 41.91 2.75 F
2927 3545 0.033504 CTAGTGTGTGTGCGGAAGGT 59.966 55.000 0.00 0.0 0.00 3.50 F
3426 4050 0.036010 GCGCCCAGTGCCTATGATAT 60.036 55.000 0.00 0.0 36.24 1.63 F
4476 5626 0.033503 TATGAGCACAGGGAGGACGA 60.034 55.000 0.00 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 2624 0.327964 ATGGCCCCTCTTAGCTCCTT 60.328 55.0 0.00 0.0 0.00 3.36 R
3407 4031 0.036010 ATATCATAGGCACTGGGCGC 60.036 55.0 0.00 0.0 46.16 6.53 R
4456 5596 0.103208 CGTCCTCCCTGTGCTCATAC 59.897 60.0 0.00 0.0 0.00 2.39 R
4813 5975 0.469070 GGATGTGCTCTCCTGCTGAT 59.531 55.0 0.00 0.0 0.00 2.90 R
5524 6732 0.528466 CGAGTGATGGATCCACGGTG 60.528 60.0 18.99 0.0 39.38 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 4.021925 CCTATGCTAGCCCCGCCC 62.022 72.222 13.29 0.00 0.00 6.13
313 317 2.044946 GCAAAGCACCCGGATCCT 60.045 61.111 10.75 0.00 0.00 3.24
375 383 8.779354 ATAGTAGTGAGAGATGTTTTGGTTTC 57.221 34.615 0.00 0.00 0.00 2.78
745 781 2.749076 CTGGTCAAATGCCTCGATGAAA 59.251 45.455 0.00 0.00 0.00 2.69
748 784 3.243201 GGTCAAATGCCTCGATGAAATCC 60.243 47.826 0.00 0.00 41.39 3.01
785 821 9.788889 AGATCTGATCAACAAAATATCTATGCA 57.211 29.630 19.12 0.00 0.00 3.96
788 824 9.006839 TCTGATCAACAAAATATCTATGCATCC 57.993 33.333 0.19 0.00 0.00 3.51
789 825 8.694581 TGATCAACAAAATATCTATGCATCCA 57.305 30.769 0.19 0.00 0.00 3.41
809 845 1.352352 ACATCCACTAAACAGGCAGCT 59.648 47.619 0.00 0.00 0.00 4.24
857 893 6.402983 GCAGCAGCTAAGTTATAGCCAATATG 60.403 42.308 0.00 0.00 41.25 1.78
861 897 9.817809 GCAGCTAAGTTATAGCCAATATGTATA 57.182 33.333 3.96 0.00 41.25 1.47
874 910 9.860650 AGCCAATATGTATAGAGAGAGGTATAG 57.139 37.037 0.00 0.00 0.00 1.31
875 911 9.854668 GCCAATATGTATAGAGAGAGGTATAGA 57.145 37.037 0.00 0.00 0.00 1.98
917 953 4.907879 ACCAAGCAAGAGTTTCTCAAAG 57.092 40.909 0.00 0.00 32.06 2.77
918 954 3.633986 ACCAAGCAAGAGTTTCTCAAAGG 59.366 43.478 0.00 0.00 32.06 3.11
919 955 3.885297 CCAAGCAAGAGTTTCTCAAAGGA 59.115 43.478 0.00 0.00 32.06 3.36
920 956 4.023365 CCAAGCAAGAGTTTCTCAAAGGAG 60.023 45.833 0.00 0.00 42.80 3.69
921 957 3.749226 AGCAAGAGTTTCTCAAAGGAGG 58.251 45.455 0.00 0.00 41.69 4.30
935 971 5.136828 TCAAAGGAGGTATAGAGAGAGCAG 58.863 45.833 0.00 0.00 0.00 4.24
944 980 7.126733 AGGTATAGAGAGAGCAGTAGGAAAAA 58.873 38.462 0.00 0.00 0.00 1.94
996 1032 2.024871 GAGTCCACCGCGAGATCG 59.975 66.667 8.23 0.00 43.27 3.69
1015 1051 2.359850 GCATGGCGTTGGAGGTCA 60.360 61.111 0.00 0.00 0.00 4.02
1052 1088 3.118482 TCTCTTGATAAGCTGCTCAAGGG 60.118 47.826 26.29 24.87 46.72 3.95
1063 1099 2.449518 TCAAGGGTGACTGGGGCA 60.450 61.111 0.00 0.00 0.00 5.36
1082 1118 0.324943 ATGGACAAGACCGTGAAGGG 59.675 55.000 0.00 0.00 46.96 3.95
1099 1135 3.426568 GCGAGCTGTGGAACCTGC 61.427 66.667 0.00 0.00 34.36 4.85
1156 1196 3.545574 TATCCAGCATGCCGCCGA 61.546 61.111 15.66 5.02 44.04 5.54
1187 1227 0.900182 TCGAGTGTGATGCTCAGGGT 60.900 55.000 0.00 0.00 33.45 4.34
1190 1230 2.042831 GTGTGATGCTCAGGGTGCC 61.043 63.158 0.00 0.00 0.00 5.01
1210 1250 1.799933 CCAGGTCAGGGAGCTATCTT 58.200 55.000 0.00 0.00 38.40 2.40
1298 1357 5.979517 GCAAAATTAACCATGAGATAGCCAC 59.020 40.000 0.00 0.00 0.00 5.01
1328 1387 9.903682 CATCAAAGAAACACTCATCAAGTTTAT 57.096 29.630 0.00 0.00 35.45 1.40
1343 1402 5.945191 TCAAGTTTATGGAGATGCATCAACA 59.055 36.000 27.81 23.93 0.00 3.33
1350 1409 3.200605 TGGAGATGCATCAACAGTATGGT 59.799 43.478 27.81 3.39 43.62 3.55
1366 1425 1.784358 TGGTCCGTATCCTTGTAGGG 58.216 55.000 0.00 0.00 35.59 3.53
1415 1482 1.750778 CCCTGGTATGTTTGCCATGTC 59.249 52.381 0.00 0.00 36.97 3.06
1417 1484 1.750778 CTGGTATGTTTGCCATGTCCC 59.249 52.381 0.00 0.00 36.97 4.46
1420 1487 0.395036 TATGTTTGCCATGTCCCCCG 60.395 55.000 0.00 0.00 34.86 5.73
1428 1495 3.094498 ATGTCCCCCGGGGTAAGC 61.094 66.667 37.66 23.23 44.74 3.09
1433 1500 2.110420 CCCCGGGGTAAGCGAATC 59.890 66.667 33.25 0.00 0.00 2.52
1434 1501 2.440817 CCCCGGGGTAAGCGAATCT 61.441 63.158 33.25 0.00 0.00 2.40
1435 1502 1.117142 CCCCGGGGTAAGCGAATCTA 61.117 60.000 33.25 0.00 0.00 1.98
1449 1516 2.716217 GAATCTAGCCTGCTTGTTGGT 58.284 47.619 0.00 0.00 0.00 3.67
1561 1634 2.161486 GCTCAAGCAGTCTACGGCG 61.161 63.158 4.80 4.80 41.91 6.46
1562 1635 1.506718 CTCAAGCAGTCTACGGCGA 59.493 57.895 16.62 0.00 41.91 5.54
1563 1636 0.524392 CTCAAGCAGTCTACGGCGAG 60.524 60.000 16.62 6.98 41.91 5.03
1564 1637 0.958876 TCAAGCAGTCTACGGCGAGA 60.959 55.000 16.62 9.58 41.91 4.04
1565 1638 0.101399 CAAGCAGTCTACGGCGAGAT 59.899 55.000 16.62 0.00 41.91 2.75
1566 1639 0.101399 AAGCAGTCTACGGCGAGATG 59.899 55.000 16.62 12.50 41.91 2.90
1571 1644 1.671845 AGTCTACGGCGAGATGAAGAC 59.328 52.381 16.62 15.05 34.85 3.01
1596 1669 1.893062 GGGCTTTGATTGTGAGGCC 59.107 57.895 0.00 0.00 46.83 5.19
1603 1676 2.957402 TGATTGTGAGGCCTTTGTCT 57.043 45.000 6.77 0.00 0.00 3.41
1604 1677 3.228188 TGATTGTGAGGCCTTTGTCTT 57.772 42.857 6.77 0.00 0.00 3.01
1606 1679 1.593196 TTGTGAGGCCTTTGTCTTCG 58.407 50.000 6.77 0.00 0.00 3.79
1640 1713 3.434984 GCTGACATGAAGAAGGTTCTGAC 59.565 47.826 0.00 0.00 37.65 3.51
1641 1714 3.999663 CTGACATGAAGAAGGTTCTGACC 59.000 47.826 0.00 0.00 46.92 4.02
1654 1727 3.390135 GTTCTGACCAACATCTTCGACA 58.610 45.455 0.00 0.00 0.00 4.35
1700 1773 0.465460 GAACCAGACCAACACCAGCA 60.465 55.000 0.00 0.00 0.00 4.41
1762 1835 4.133820 CGCATGGTTTCTATTCCCATACA 58.866 43.478 0.00 0.00 36.85 2.29
1763 1836 4.761739 CGCATGGTTTCTATTCCCATACAT 59.238 41.667 0.00 0.00 36.85 2.29
1764 1837 5.937540 CGCATGGTTTCTATTCCCATACATA 59.062 40.000 0.00 0.00 36.85 2.29
1786 1862 2.649257 CTATCGTTGCTAGCCGCGC 61.649 63.158 13.29 0.00 43.27 6.86
1787 1863 3.133767 TATCGTTGCTAGCCGCGCT 62.134 57.895 13.29 10.58 43.27 5.92
1799 1877 1.712081 CCGCGCTTGAGTTGATGAG 59.288 57.895 5.56 0.00 0.00 2.90
1800 1878 1.699656 CCGCGCTTGAGTTGATGAGG 61.700 60.000 5.56 0.00 0.00 3.86
1830 1935 7.732025 TCTACCATCTCAGTGAAGTGTAAAAA 58.268 34.615 0.00 0.00 0.00 1.94
1896 2083 6.735678 TTAAGAATTCAGAACTGCGCATAA 57.264 33.333 12.24 0.00 0.00 1.90
1897 2084 5.627499 AAGAATTCAGAACTGCGCATAAA 57.373 34.783 12.24 0.00 0.00 1.40
1900 2088 3.536158 TTCAGAACTGCGCATAAACAC 57.464 42.857 12.24 0.00 0.00 3.32
1910 2113 5.294799 ACTGCGCATAAACACGGATAAATAA 59.705 36.000 12.24 0.00 0.00 1.40
1921 2334 9.598517 AAACACGGATAAATAATGAAATTGCAT 57.401 25.926 0.00 0.00 36.99 3.96
1922 2335 8.578308 ACACGGATAAATAATGAAATTGCATG 57.422 30.769 0.00 0.00 36.99 4.06
1963 2429 9.573166 CAATCATTAGGTGGGTTATTTATCTGA 57.427 33.333 0.00 0.00 0.00 3.27
1971 2437 7.995488 AGGTGGGTTATTTATCTGATCTTTCTG 59.005 37.037 0.00 0.00 0.00 3.02
1986 2459 6.491062 TGATCTTTCTGACATTCATTGTGGTT 59.509 34.615 0.00 0.00 39.18 3.67
1990 2463 3.004629 TCTGACATTCATTGTGGTTGTGC 59.995 43.478 0.00 0.00 39.18 4.57
1996 2469 0.947960 CATTGTGGTTGTGCGGTACA 59.052 50.000 0.00 0.00 37.56 2.90
2009 2482 1.327460 GCGGTACATACATGTGCACAG 59.673 52.381 25.84 18.42 43.87 3.66
2019 2492 2.816087 ACATGTGCACAGTCAATCTTCC 59.184 45.455 25.84 0.00 0.00 3.46
2022 2495 1.195448 GTGCACAGTCAATCTTCCGTG 59.805 52.381 13.17 0.00 0.00 4.94
2025 2498 2.069273 CACAGTCAATCTTCCGTGGTC 58.931 52.381 0.00 0.00 0.00 4.02
2027 2500 3.056821 CACAGTCAATCTTCCGTGGTCTA 60.057 47.826 0.00 0.00 0.00 2.59
2030 2503 5.178797 CAGTCAATCTTCCGTGGTCTAAAT 58.821 41.667 0.00 0.00 0.00 1.40
2031 2504 5.292101 CAGTCAATCTTCCGTGGTCTAAATC 59.708 44.000 0.00 0.00 0.00 2.17
2032 2505 5.046591 AGTCAATCTTCCGTGGTCTAAATCA 60.047 40.000 0.00 0.00 0.00 2.57
2033 2506 5.817816 GTCAATCTTCCGTGGTCTAAATCAT 59.182 40.000 0.00 0.00 0.00 2.45
2034 2507 5.817296 TCAATCTTCCGTGGTCTAAATCATG 59.183 40.000 0.00 0.00 0.00 3.07
2035 2508 4.137116 TCTTCCGTGGTCTAAATCATGG 57.863 45.455 0.00 0.00 40.45 3.66
2036 2509 3.517901 TCTTCCGTGGTCTAAATCATGGT 59.482 43.478 0.00 0.00 40.12 3.55
2037 2510 3.536956 TCCGTGGTCTAAATCATGGTC 57.463 47.619 0.00 0.00 40.12 4.02
2038 2511 2.169769 TCCGTGGTCTAAATCATGGTCC 59.830 50.000 0.00 0.00 40.12 4.46
2039 2512 2.561569 CGTGGTCTAAATCATGGTCCC 58.438 52.381 0.00 0.00 0.00 4.46
2040 2513 2.170607 CGTGGTCTAAATCATGGTCCCT 59.829 50.000 0.00 0.00 0.00 4.20
2041 2514 3.741388 CGTGGTCTAAATCATGGTCCCTC 60.741 52.174 0.00 0.00 0.00 4.30
2042 2515 3.456277 GTGGTCTAAATCATGGTCCCTCT 59.544 47.826 0.00 0.00 0.00 3.69
2043 2516 4.080299 GTGGTCTAAATCATGGTCCCTCTT 60.080 45.833 0.00 0.00 0.00 2.85
2044 2517 5.130477 GTGGTCTAAATCATGGTCCCTCTTA 59.870 44.000 0.00 0.00 0.00 2.10
2045 2518 5.130477 TGGTCTAAATCATGGTCCCTCTTAC 59.870 44.000 0.00 0.00 0.00 2.34
2046 2519 5.454897 GGTCTAAATCATGGTCCCTCTTACC 60.455 48.000 0.00 0.00 37.53 2.85
2048 2521 2.897823 ATCATGGTCCCTCTTACCCT 57.102 50.000 0.00 0.00 36.06 4.34
2049 2522 2.176247 TCATGGTCCCTCTTACCCTC 57.824 55.000 0.00 0.00 36.06 4.30
2050 2523 1.364678 TCATGGTCCCTCTTACCCTCA 59.635 52.381 0.00 0.00 36.06 3.86
2051 2524 1.486726 CATGGTCCCTCTTACCCTCAC 59.513 57.143 0.00 0.00 36.06 3.51
2115 2588 9.289782 AGACCACTAATTAATAAGATCAATGGC 57.710 33.333 0.00 0.00 0.00 4.40
2116 2589 9.289782 GACCACTAATTAATAAGATCAATGGCT 57.710 33.333 0.00 0.00 0.00 4.75
2117 2590 9.289782 ACCACTAATTAATAAGATCAATGGCTC 57.710 33.333 0.00 0.00 0.00 4.70
2118 2591 9.288576 CCACTAATTAATAAGATCAATGGCTCA 57.711 33.333 0.00 0.00 0.00 4.26
2138 2611 9.219603 TGGCTCATATCTATTTTATACTTGTGC 57.780 33.333 0.00 0.00 0.00 4.57
2139 2612 9.442047 GGCTCATATCTATTTTATACTTGTGCT 57.558 33.333 0.00 0.00 0.00 4.40
2154 2627 6.506500 ACTTGTGCTTCTCATATGAAAAGG 57.493 37.500 18.27 5.86 0.00 3.11
2155 2628 6.240894 ACTTGTGCTTCTCATATGAAAAGGA 58.759 36.000 18.27 13.85 0.00 3.36
2156 2629 6.373774 ACTTGTGCTTCTCATATGAAAAGGAG 59.626 38.462 18.27 8.26 0.00 3.69
2157 2630 4.637534 TGTGCTTCTCATATGAAAAGGAGC 59.362 41.667 18.27 16.12 0.00 4.70
2158 2631 4.880696 GTGCTTCTCATATGAAAAGGAGCT 59.119 41.667 18.27 0.00 0.00 4.09
2159 2632 6.051717 GTGCTTCTCATATGAAAAGGAGCTA 58.948 40.000 18.27 6.41 0.00 3.32
2160 2633 6.540189 GTGCTTCTCATATGAAAAGGAGCTAA 59.460 38.462 18.27 1.40 0.00 3.09
2161 2634 6.765036 TGCTTCTCATATGAAAAGGAGCTAAG 59.235 38.462 18.27 3.68 0.00 2.18
2162 2635 6.989169 GCTTCTCATATGAAAAGGAGCTAAGA 59.011 38.462 18.27 0.66 0.00 2.10
2163 2636 7.171337 GCTTCTCATATGAAAAGGAGCTAAGAG 59.829 40.741 18.27 2.79 0.00 2.85
2164 2637 7.060383 TCTCATATGAAAAGGAGCTAAGAGG 57.940 40.000 6.90 0.00 0.00 3.69
2165 2638 6.042552 TCTCATATGAAAAGGAGCTAAGAGGG 59.957 42.308 6.90 0.00 0.00 4.30
2166 2639 3.941704 ATGAAAAGGAGCTAAGAGGGG 57.058 47.619 0.00 0.00 0.00 4.79
2167 2640 1.282157 TGAAAAGGAGCTAAGAGGGGC 59.718 52.381 0.00 0.00 0.00 5.80
2168 2641 0.626382 AAAAGGAGCTAAGAGGGGCC 59.374 55.000 0.00 0.00 0.00 5.80
2169 2642 0.550147 AAAGGAGCTAAGAGGGGCCA 60.550 55.000 4.39 0.00 0.00 5.36
2170 2643 0.327964 AAGGAGCTAAGAGGGGCCAT 60.328 55.000 4.39 0.00 0.00 4.40
2171 2644 1.059006 AGGAGCTAAGAGGGGCCATG 61.059 60.000 4.39 0.00 0.00 3.66
2172 2645 1.348775 GGAGCTAAGAGGGGCCATGT 61.349 60.000 4.39 0.00 0.00 3.21
2173 2646 0.548510 GAGCTAAGAGGGGCCATGTT 59.451 55.000 4.39 5.65 0.00 2.71
2174 2647 1.768870 GAGCTAAGAGGGGCCATGTTA 59.231 52.381 4.39 6.76 0.00 2.41
2175 2648 2.172717 GAGCTAAGAGGGGCCATGTTAA 59.827 50.000 9.17 0.00 0.00 2.01
2176 2649 2.580783 AGCTAAGAGGGGCCATGTTAAA 59.419 45.455 9.17 0.00 0.00 1.52
2177 2650 3.011257 AGCTAAGAGGGGCCATGTTAAAA 59.989 43.478 9.17 0.00 0.00 1.52
2178 2651 3.130516 GCTAAGAGGGGCCATGTTAAAAC 59.869 47.826 9.17 0.00 0.00 2.43
2179 2652 3.542969 AAGAGGGGCCATGTTAAAACT 57.457 42.857 4.39 0.00 0.00 2.66
2180 2653 2.807676 AGAGGGGCCATGTTAAAACTG 58.192 47.619 4.39 0.00 0.00 3.16
2181 2654 1.204704 GAGGGGCCATGTTAAAACTGC 59.795 52.381 4.39 0.00 0.00 4.40
2182 2655 1.203174 AGGGGCCATGTTAAAACTGCT 60.203 47.619 4.39 0.00 0.00 4.24
2190 2663 5.466393 GCCATGTTAAAACTGCTCAAATTGT 59.534 36.000 0.00 0.00 0.00 2.71
2200 2673 9.979578 AAAACTGCTCAAATTGTTAATATGTGA 57.020 25.926 0.00 0.00 0.00 3.58
2221 2694 6.267471 TGTGATTTTGATTATATGGCTTCCCC 59.733 38.462 0.00 0.00 0.00 4.81
2223 2696 7.669722 GTGATTTTGATTATATGGCTTCCCCTA 59.330 37.037 0.00 0.00 0.00 3.53
2224 2697 8.401105 TGATTTTGATTATATGGCTTCCCCTAT 58.599 33.333 0.00 0.00 0.00 2.57
2225 2698 9.920946 GATTTTGATTATATGGCTTCCCCTATA 57.079 33.333 0.00 0.00 0.00 1.31
2239 2721 8.718656 GGCTTCCCCTATATATATGAAAGTGAT 58.281 37.037 5.44 0.00 0.00 3.06
2243 2725 9.363401 TCCCCTATATATATGAAAGTGATACCG 57.637 37.037 5.44 0.00 0.00 4.02
2244 2726 8.088981 CCCCTATATATATGAAAGTGATACCGC 58.911 40.741 5.44 0.00 0.00 5.68
2245 2727 8.861086 CCCTATATATATGAAAGTGATACCGCT 58.139 37.037 5.44 0.00 33.94 5.52
2250 2732 2.778299 TGAAAGTGATACCGCTTGCTT 58.222 42.857 0.00 0.00 41.86 3.91
2266 2748 4.778415 TTGCTCGGCTCTCGCGAC 62.778 66.667 3.71 0.00 39.05 5.19
2303 2789 2.685380 CGCTCCCTTCCTCCACCT 60.685 66.667 0.00 0.00 0.00 4.00
2304 2790 1.381327 CGCTCCCTTCCTCCACCTA 60.381 63.158 0.00 0.00 0.00 3.08
2307 2793 0.340208 CTCCCTTCCTCCACCTACCT 59.660 60.000 0.00 0.00 0.00 3.08
2378 2874 0.336737 GAGTCCTTCCTCCTCCCTCA 59.663 60.000 0.00 0.00 0.00 3.86
2461 3041 4.624364 CAGTGGCACGTGGCTCCA 62.624 66.667 37.33 23.89 44.01 3.86
2462 3042 4.320456 AGTGGCACGTGGCTCCAG 62.320 66.667 37.33 2.79 44.01 3.86
2481 3061 3.933722 AGCTGTGCAGGTGCTCGT 61.934 61.111 2.87 0.00 42.66 4.18
2482 3062 2.974698 GCTGTGCAGGTGCTCGTT 60.975 61.111 3.18 0.00 42.66 3.85
2483 3063 2.941333 CTGTGCAGGTGCTCGTTG 59.059 61.111 3.18 0.00 42.66 4.10
2484 3064 2.591429 TGTGCAGGTGCTCGTTGG 60.591 61.111 3.18 0.00 42.66 3.77
2485 3065 4.030452 GTGCAGGTGCTCGTTGGC 62.030 66.667 3.18 0.00 42.66 4.52
2491 3071 4.465512 GTGCTCGTTGGCGGCATG 62.466 66.667 14.32 9.13 42.68 4.06
2554 3134 3.851128 GGTCGGGTCTGCTAGGGC 61.851 72.222 0.00 0.00 39.26 5.19
2619 3199 4.658786 AGCCTCCCTTCCGGTGGT 62.659 66.667 0.00 0.00 45.75 4.16
2710 3291 2.031870 TGACGTGGGATGACCTAGATG 58.968 52.381 0.00 0.00 41.11 2.90
2760 3347 2.113139 CTTGGGCTGTGGTCGGTT 59.887 61.111 0.00 0.00 0.00 4.44
2768 3355 0.588252 CTGTGGTCGGTTGCTTCTTG 59.412 55.000 0.00 0.00 0.00 3.02
2773 3364 2.256461 CGGTTGCTTCTTGCTGCC 59.744 61.111 0.00 0.00 43.37 4.85
2882 3500 1.307097 CTCCTATGCTTGGAGCTTGC 58.693 55.000 7.15 0.00 43.67 4.01
2922 3540 2.742372 GGCCTAGTGTGTGTGCGG 60.742 66.667 0.00 0.00 0.00 5.69
2927 3545 0.033504 CTAGTGTGTGTGCGGAAGGT 59.966 55.000 0.00 0.00 0.00 3.50
3006 3624 1.923395 AAGGTCTTGGATGCCGGGA 60.923 57.895 2.18 0.00 0.00 5.14
3073 3692 2.809861 CTTGGTGCTGCCCGATGACT 62.810 60.000 0.00 0.00 36.04 3.41
3100 3719 4.063967 CGGGCAGCGTGGTAGTCA 62.064 66.667 0.00 0.00 0.00 3.41
3114 3733 1.003118 GTAGTCAGGGTGTGGCATTCA 59.997 52.381 0.00 0.00 30.67 2.57
3129 3748 0.320771 ATTCAGTGGCGGTGAGTGTC 60.321 55.000 0.00 0.00 0.00 3.67
3146 3765 4.958897 CGGCCGGGGGTGAAAACA 62.959 66.667 20.10 0.00 0.00 2.83
3149 3768 1.906333 GCCGGGGGTGAAAACATGT 60.906 57.895 2.18 0.00 0.00 3.21
3162 3781 6.316390 GGTGAAAACATGTTCTATCTTCGGAT 59.684 38.462 12.39 0.00 38.39 4.18
3237 3857 2.338620 CCGTCGTGTTGCTCCAGA 59.661 61.111 0.00 0.00 0.00 3.86
3288 3908 1.153628 GCGCTCCGGTGTCATAACT 60.154 57.895 0.00 0.00 0.00 2.24
3291 3911 2.073816 CGCTCCGGTGTCATAACTTTT 58.926 47.619 0.00 0.00 0.00 2.27
3340 3962 1.474879 TCGTCGTATGTGGCTTCATCA 59.525 47.619 0.00 0.00 0.00 3.07
3349 3971 2.401195 GCTTCATCACTTCGCGGC 59.599 61.111 6.13 0.00 0.00 6.53
3350 3972 2.390599 GCTTCATCACTTCGCGGCA 61.391 57.895 6.13 0.00 0.00 5.69
3362 3985 3.422303 GCGGCAGCATGTTCACGA 61.422 61.111 3.18 0.00 44.35 4.35
3367 3990 1.402968 GGCAGCATGTTCACGATTGAT 59.597 47.619 0.00 0.00 39.31 2.57
3369 3992 2.447250 CAGCATGTTCACGATTGATGC 58.553 47.619 0.00 0.00 36.08 3.91
3374 3998 0.679640 GTTCACGATTGATGCCCCCA 60.680 55.000 0.00 0.00 0.00 4.96
3384 4008 0.255890 GATGCCCCCAGTTGCTCTTA 59.744 55.000 0.00 0.00 0.00 2.10
3387 4011 1.211949 TGCCCCCAGTTGCTCTTATAC 59.788 52.381 0.00 0.00 0.00 1.47
3390 4014 2.565841 CCCCAGTTGCTCTTATACTGC 58.434 52.381 0.00 0.00 38.32 4.40
3391 4015 2.171448 CCCCAGTTGCTCTTATACTGCT 59.829 50.000 0.00 0.00 38.32 4.24
3392 4016 3.388024 CCCCAGTTGCTCTTATACTGCTA 59.612 47.826 0.00 0.00 38.32 3.49
3393 4017 4.502259 CCCCAGTTGCTCTTATACTGCTAG 60.502 50.000 0.00 0.00 38.32 3.42
3394 4018 4.502259 CCCAGTTGCTCTTATACTGCTAGG 60.502 50.000 0.00 0.00 38.32 3.02
3395 4019 4.502259 CCAGTTGCTCTTATACTGCTAGGG 60.502 50.000 0.00 0.00 38.32 3.53
3396 4020 3.643792 AGTTGCTCTTATACTGCTAGGGG 59.356 47.826 0.00 0.00 0.00 4.79
3397 4021 3.330126 TGCTCTTATACTGCTAGGGGT 57.670 47.619 0.00 0.00 0.00 4.95
3398 4022 2.965831 TGCTCTTATACTGCTAGGGGTG 59.034 50.000 0.00 0.00 0.00 4.61
3399 4023 2.300437 GCTCTTATACTGCTAGGGGTGG 59.700 54.545 0.00 0.00 0.00 4.61
3400 4024 3.577919 CTCTTATACTGCTAGGGGTGGT 58.422 50.000 0.00 0.00 0.00 4.16
3401 4025 3.305720 TCTTATACTGCTAGGGGTGGTG 58.694 50.000 0.00 0.00 0.00 4.17
3402 4026 2.860817 TATACTGCTAGGGGTGGTGT 57.139 50.000 0.00 0.00 0.00 4.16
3403 4027 1.966845 ATACTGCTAGGGGTGGTGTT 58.033 50.000 0.00 0.00 0.00 3.32
3404 4028 0.981183 TACTGCTAGGGGTGGTGTTG 59.019 55.000 0.00 0.00 0.00 3.33
3405 4029 1.675641 CTGCTAGGGGTGGTGTTGC 60.676 63.158 0.00 0.00 0.00 4.17
3406 4030 2.129555 CTGCTAGGGGTGGTGTTGCT 62.130 60.000 0.00 0.00 0.00 3.91
3407 4031 1.675641 GCTAGGGGTGGTGTTGCTG 60.676 63.158 0.00 0.00 0.00 4.41
3408 4032 1.675641 CTAGGGGTGGTGTTGCTGC 60.676 63.158 0.00 0.00 0.00 5.25
3409 4033 3.545124 TAGGGGTGGTGTTGCTGCG 62.545 63.158 0.00 0.00 0.00 5.18
3416 4040 4.332637 GTGTTGCTGCGCCCAGTG 62.333 66.667 4.18 0.00 41.26 3.66
3421 4045 4.864334 GCTGCGCCCAGTGCCTAT 62.864 66.667 4.18 0.00 41.26 2.57
3422 4046 2.898840 CTGCGCCCAGTGCCTATG 60.899 66.667 4.18 0.00 38.39 2.23
3423 4047 3.390183 CTGCGCCCAGTGCCTATGA 62.390 63.158 4.18 0.00 38.39 2.15
3424 4048 2.111878 GCGCCCAGTGCCTATGAT 59.888 61.111 0.00 0.00 36.24 2.45
3425 4049 1.371183 GCGCCCAGTGCCTATGATA 59.629 57.895 0.00 0.00 36.24 2.15
3426 4050 0.036010 GCGCCCAGTGCCTATGATAT 60.036 55.000 0.00 0.00 36.24 1.63
3427 4051 1.207089 GCGCCCAGTGCCTATGATATA 59.793 52.381 0.00 0.00 36.24 0.86
3428 4052 2.158900 GCGCCCAGTGCCTATGATATAT 60.159 50.000 0.00 0.00 36.24 0.86
3429 4053 3.069586 GCGCCCAGTGCCTATGATATATA 59.930 47.826 0.00 0.00 36.24 0.86
3430 4054 4.262635 GCGCCCAGTGCCTATGATATATAT 60.263 45.833 0.00 0.00 36.24 0.86
3431 4055 5.047306 GCGCCCAGTGCCTATGATATATATA 60.047 44.000 0.00 0.00 36.24 0.86
3432 4056 6.390721 CGCCCAGTGCCTATGATATATATAC 58.609 44.000 0.00 0.00 36.24 1.47
3433 4057 6.209589 CGCCCAGTGCCTATGATATATATACT 59.790 42.308 0.00 0.00 36.24 2.12
3434 4058 7.393515 CGCCCAGTGCCTATGATATATATACTA 59.606 40.741 0.00 0.00 36.24 1.82
3435 4059 8.524487 GCCCAGTGCCTATGATATATATACTAC 58.476 40.741 0.00 0.00 0.00 2.73
3436 4060 9.815306 CCCAGTGCCTATGATATATATACTACT 57.185 37.037 0.00 0.00 0.00 2.57
3497 4121 9.607333 ACCCCATATATCTCATATACTACCATG 57.393 37.037 0.00 0.00 31.02 3.66
3498 4122 9.607333 CCCCATATATCTCATATACTACCATGT 57.393 37.037 0.00 0.00 31.02 3.21
3626 4250 9.639601 TTCAAAGTGAGTTGTATGTAGTATCTG 57.360 33.333 0.00 0.00 0.00 2.90
3627 4251 8.803235 TCAAAGTGAGTTGTATGTAGTATCTGT 58.197 33.333 0.00 0.00 0.00 3.41
3628 4252 9.077674 CAAAGTGAGTTGTATGTAGTATCTGTC 57.922 37.037 0.00 0.00 0.00 3.51
3629 4253 7.939784 AGTGAGTTGTATGTAGTATCTGTCA 57.060 36.000 0.00 0.00 0.00 3.58
3630 4254 8.349568 AGTGAGTTGTATGTAGTATCTGTCAA 57.650 34.615 0.00 0.00 0.00 3.18
3631 4255 8.803235 AGTGAGTTGTATGTAGTATCTGTCAAA 58.197 33.333 0.00 0.00 0.00 2.69
3632 4256 9.587772 GTGAGTTGTATGTAGTATCTGTCAAAT 57.412 33.333 0.00 0.00 0.00 2.32
3780 4404 9.606631 TTCACAAATATAATAAAAACCATGGGC 57.393 29.630 18.09 0.00 0.00 5.36
3781 4405 8.762645 TCACAAATATAATAAAAACCATGGGCA 58.237 29.630 18.09 0.00 0.00 5.36
3782 4406 9.388506 CACAAATATAATAAAAACCATGGGCAA 57.611 29.630 18.09 0.00 0.00 4.52
3783 4407 9.389755 ACAAATATAATAAAAACCATGGGCAAC 57.610 29.630 18.09 0.00 0.00 4.17
3784 4408 9.612066 CAAATATAATAAAAACCATGGGCAACT 57.388 29.630 18.09 0.00 0.00 3.16
3786 4410 9.612066 AATATAATAAAAACCATGGGCAACTTG 57.388 29.630 18.09 0.00 0.00 3.16
3787 4411 1.965935 AAAAACCATGGGCAACTTGC 58.034 45.000 18.09 5.08 44.08 4.01
3886 4510 4.278170 TCCAACATCATTGGAAAGTGACAC 59.722 41.667 5.91 0.00 44.90 3.67
3894 4519 3.917329 TGGAAAGTGACACTAGACTCG 57.083 47.619 8.91 0.00 0.00 4.18
3898 4523 3.644884 AAGTGACACTAGACTCGTTGG 57.355 47.619 8.91 0.00 0.00 3.77
3908 4533 5.347907 CACTAGACTCGTTGGAAAATGTACC 59.652 44.000 0.00 0.00 0.00 3.34
3970 5074 8.489559 CAACAAACAGTAAATCCAACATCATTG 58.510 33.333 0.00 0.00 0.00 2.82
3973 5077 9.859427 CAAACAGTAAATCCAACATCATTGTAT 57.141 29.630 0.00 0.00 34.06 2.29
4017 5132 7.293073 AGGTATTGGTAAATCATGCATCTCTT 58.707 34.615 0.00 0.00 0.00 2.85
4031 5152 8.708378 TCATGCATCTCTTTATTCCTCTCTTTA 58.292 33.333 0.00 0.00 0.00 1.85
4032 5153 9.504708 CATGCATCTCTTTATTCCTCTCTTTAT 57.495 33.333 0.00 0.00 0.00 1.40
4034 5155 9.553064 TGCATCTCTTTATTCCTCTCTTTATTC 57.447 33.333 0.00 0.00 0.00 1.75
4035 5156 9.777297 GCATCTCTTTATTCCTCTCTTTATTCT 57.223 33.333 0.00 0.00 0.00 2.40
4049 5173 3.864789 TTATTCTCTCCCCCTGCATTC 57.135 47.619 0.00 0.00 0.00 2.67
4050 5174 1.600058 ATTCTCTCCCCCTGCATTCA 58.400 50.000 0.00 0.00 0.00 2.57
4061 5196 3.313526 CCCCTGCATTCAGAGTTTAATCG 59.686 47.826 0.00 0.00 42.95 3.34
4077 5216 8.847444 AGTTTAATCGATCAGATTTTTCATGC 57.153 30.769 14.85 0.00 46.80 4.06
4078 5217 8.461222 AGTTTAATCGATCAGATTTTTCATGCA 58.539 29.630 14.85 0.00 46.80 3.96
4096 5235 2.490509 TGCATGTTGATTCAAGCCTCTG 59.509 45.455 0.00 0.00 32.12 3.35
4097 5236 2.751259 GCATGTTGATTCAAGCCTCTGA 59.249 45.455 0.00 0.00 0.00 3.27
4103 5243 2.026822 TGATTCAAGCCTCTGACCTTCC 60.027 50.000 0.00 0.00 0.00 3.46
4178 5318 4.090034 GTTGCTTCGTTGAACGTGTTTTA 58.910 39.130 17.86 0.00 43.14 1.52
4185 5325 2.759538 TGAACGTGTTTTAAAGGGCG 57.240 45.000 0.00 6.04 0.00 6.13
4189 5329 0.664224 CGTGTTTTAAAGGGCGGTGT 59.336 50.000 0.00 0.00 0.00 4.16
4200 5340 0.594602 GGGCGGTGTTGGAAGTAAAC 59.405 55.000 0.00 0.00 0.00 2.01
4260 5400 2.305127 GGTGGCGTCGTGTACACAC 61.305 63.158 24.98 19.14 43.15 3.82
4264 5404 1.002250 GGCGTCGTGTACACACTGAG 61.002 60.000 24.98 12.07 44.34 3.35
4265 5405 1.002250 GCGTCGTGTACACACTGAGG 61.002 60.000 24.98 18.75 44.34 3.86
4268 5408 1.733041 CGTGTACACACTGAGGCCG 60.733 63.158 24.98 4.63 44.34 6.13
4271 5411 1.446272 GTACACACTGAGGCCGCTC 60.446 63.158 8.34 0.00 0.00 5.03
4272 5412 2.646175 TACACACTGAGGCCGCTCC 61.646 63.158 8.34 0.00 0.00 4.70
4273 5413 4.007644 CACACTGAGGCCGCTCCA 62.008 66.667 8.34 0.00 37.29 3.86
4283 5423 2.046892 CCGCTCCACCCTGTCAAG 60.047 66.667 0.00 0.00 0.00 3.02
4284 5424 2.046892 CGCTCCACCCTGTCAAGG 60.047 66.667 0.00 0.00 44.06 3.61
4287 5427 2.847234 TCCACCCTGTCAAGGCGT 60.847 61.111 0.00 0.00 42.96 5.68
4289 5429 0.907704 TCCACCCTGTCAAGGCGTAT 60.908 55.000 0.00 0.00 42.96 3.06
4302 5442 1.404391 AGGCGTATGAGTTACTCCGTG 59.596 52.381 10.10 0.00 40.09 4.94
4312 5452 0.605319 TTACTCCGTGCCAAAGCTGG 60.605 55.000 0.00 0.00 46.65 4.85
4313 5453 2.463589 TACTCCGTGCCAAAGCTGGG 62.464 60.000 0.27 0.27 43.74 4.45
4328 5468 2.936202 GCTGGGGCTGAAAGATATGAA 58.064 47.619 0.00 0.00 34.07 2.57
4329 5469 2.620585 GCTGGGGCTGAAAGATATGAAC 59.379 50.000 0.00 0.00 34.07 3.18
4330 5470 3.889815 CTGGGGCTGAAAGATATGAACA 58.110 45.455 0.00 0.00 34.07 3.18
4332 5472 4.464008 TGGGGCTGAAAGATATGAACATC 58.536 43.478 0.00 0.00 34.07 3.06
4339 5479 7.977853 GGCTGAAAGATATGAACATCAATTTGT 59.022 33.333 0.00 0.00 34.07 2.83
4340 5480 9.017669 GCTGAAAGATATGAACATCAATTTGTC 57.982 33.333 0.00 0.00 34.07 3.18
4347 5487 4.558178 TGAACATCAATTTGTCATGGTGC 58.442 39.130 0.00 0.00 30.67 5.01
4357 5497 5.389859 TTTGTCATGGTGCCAGATAAAAG 57.610 39.130 0.00 0.00 0.00 2.27
4358 5498 4.299586 TGTCATGGTGCCAGATAAAAGA 57.700 40.909 0.00 0.00 0.00 2.52
4359 5499 4.661222 TGTCATGGTGCCAGATAAAAGAA 58.339 39.130 0.00 0.00 0.00 2.52
4363 5503 5.716228 TCATGGTGCCAGATAAAAGAATGTT 59.284 36.000 0.00 0.00 0.00 2.71
4364 5504 5.389859 TGGTGCCAGATAAAAGAATGTTG 57.610 39.130 0.00 0.00 0.00 3.33
4365 5505 4.176271 GGTGCCAGATAAAAGAATGTTGC 58.824 43.478 0.00 0.00 0.00 4.17
4366 5506 4.082026 GGTGCCAGATAAAAGAATGTTGCT 60.082 41.667 0.00 0.00 0.00 3.91
4396 5536 1.063792 TGGTGTGCCAATAGCCATCAT 60.064 47.619 0.00 0.00 42.83 2.45
4413 5553 6.728164 AGCCATCATTATGATAGGTAGAGTGT 59.272 38.462 7.44 0.00 34.28 3.55
4417 5557 9.770097 CATCATTATGATAGGTAGAGTGTTTGT 57.230 33.333 7.44 0.00 34.28 2.83
4418 5558 9.988815 ATCATTATGATAGGTAGAGTGTTTGTC 57.011 33.333 5.83 0.00 34.88 3.18
4420 5560 9.254133 CATTATGATAGGTAGAGTGTTTGTCAG 57.746 37.037 0.00 0.00 0.00 3.51
4428 5568 7.227156 AGGTAGAGTGTTTGTCAGAAATCAAT 58.773 34.615 0.00 0.00 0.00 2.57
4429 5569 7.721399 AGGTAGAGTGTTTGTCAGAAATCAATT 59.279 33.333 0.00 0.00 0.00 2.32
4437 5577 4.996793 TGTCAGAAATCAATTCAAGGGGA 58.003 39.130 0.00 0.00 40.72 4.81
4441 5581 1.767759 AATCAATTCAAGGGGAGGCG 58.232 50.000 0.00 0.00 0.00 5.52
4442 5582 0.106519 ATCAATTCAAGGGGAGGCGG 60.107 55.000 0.00 0.00 0.00 6.13
4443 5583 2.043953 AATTCAAGGGGAGGCGGC 60.044 61.111 0.00 0.00 0.00 6.53
4453 5593 4.814294 GAGGCGGCGGTGTGTAGG 62.814 72.222 9.78 0.00 0.00 3.18
4467 5617 2.233676 TGTGTAGGGTGTATGAGCACAG 59.766 50.000 0.00 0.00 40.89 3.66
4476 5626 0.033503 TATGAGCACAGGGAGGACGA 60.034 55.000 0.00 0.00 0.00 4.20
4488 5638 3.703127 GGACGAGGGCTTTCCGGT 61.703 66.667 0.00 0.00 41.52 5.28
4516 5666 5.763876 AGGAAGGTGTTGTCTTATAGCTT 57.236 39.130 0.00 0.00 33.99 3.74
4649 5799 5.480073 CCTTGTTCCTGATGGGTTATTTGAA 59.520 40.000 0.00 0.00 36.25 2.69
4677 5827 4.361420 GGAGACCTATTTCAACGAGCTAC 58.639 47.826 0.00 0.00 0.00 3.58
4767 5917 3.189080 CGTTTTGATGCTTGACCTCATCA 59.811 43.478 1.25 1.25 44.99 3.07
4769 5919 3.986996 TTGATGCTTGACCTCATCAGA 57.013 42.857 5.27 0.00 46.49 3.27
4770 5920 3.257469 TGATGCTTGACCTCATCAGAC 57.743 47.619 1.25 0.00 42.72 3.51
4791 5947 1.621301 CCTGTCAAGCAGCGAGAACG 61.621 60.000 0.00 0.00 43.71 3.95
4802 5958 0.318784 GCGAGAACGTCTCCACTGTT 60.319 55.000 8.73 0.00 40.34 3.16
4803 5959 1.068748 GCGAGAACGTCTCCACTGTTA 60.069 52.381 8.73 0.00 40.34 2.41
4811 5973 4.212716 ACGTCTCCACTGTTATAGGCATA 58.787 43.478 0.00 0.00 0.00 3.14
4813 5975 5.128171 ACGTCTCCACTGTTATAGGCATAAA 59.872 40.000 0.00 0.00 0.00 1.40
4814 5976 6.183360 ACGTCTCCACTGTTATAGGCATAAAT 60.183 38.462 0.00 0.00 0.00 1.40
4815 5977 6.366332 CGTCTCCACTGTTATAGGCATAAATC 59.634 42.308 0.00 0.00 0.00 2.17
4842 6004 0.394352 GAGCACATCCCAAACCGGAT 60.394 55.000 9.46 0.00 43.79 4.18
4868 6030 6.150641 CCATTCATAGATTAGCCATCCACAAG 59.849 42.308 0.00 0.00 31.20 3.16
4904 6093 1.615424 TAGCCTGGAAGTGGGGGAC 60.615 63.158 0.00 0.00 0.00 4.46
4946 6147 1.518572 CGGTAGTAGCTTGCCACCG 60.519 63.158 11.86 11.86 45.25 4.94
5018 6219 3.616956 TCCGTCAGAGATTGCAATCTT 57.383 42.857 35.91 24.36 45.39 2.40
5019 6220 3.942829 TCCGTCAGAGATTGCAATCTTT 58.057 40.909 35.91 29.61 45.39 2.52
5028 6229 4.267536 AGATTGCAATCTTTAGCAGCTCA 58.732 39.130 31.78 0.00 42.96 4.26
5045 6246 2.228343 GCTCAGCAGATTGAAAGTGCTT 59.772 45.455 2.24 0.00 45.31 3.91
5106 6307 1.401905 CAAGCAAAATAGGACGCCTCC 59.598 52.381 1.46 0.00 34.61 4.30
5145 6346 4.451150 TGACGGCGACTGGCATCC 62.451 66.667 16.62 0.00 46.16 3.51
5204 6405 2.515757 TGTCTGCGTGCTGGCAAA 60.516 55.556 3.44 0.00 43.39 3.68
5227 6428 2.427753 GAGGATGATGGGTCGGGC 59.572 66.667 0.00 0.00 0.00 6.13
5228 6429 3.521529 GAGGATGATGGGTCGGGCG 62.522 68.421 0.00 0.00 0.00 6.13
5333 6535 2.438975 ATGCGGGTGCTGGTGATG 60.439 61.111 0.00 0.00 43.34 3.07
5381 6583 2.617532 GCAGAAGAAGCTGGTGGAATCT 60.618 50.000 0.00 0.00 36.41 2.40
5439 6641 1.072331 GGTTCAGCACAGAGGGAAAGA 59.928 52.381 0.00 0.00 0.00 2.52
5520 6728 2.927056 GGGCCATCCTACCCAAGG 59.073 66.667 4.39 0.00 46.22 3.61
5636 6844 3.069980 GATGCCGTCACTCCGCTCT 62.070 63.158 0.00 0.00 0.00 4.09
5666 6874 2.774234 CCACATGGAGGAGGACAAGTAT 59.226 50.000 0.00 0.00 37.39 2.12
5669 6877 1.112113 TGGAGGAGGACAAGTATCGC 58.888 55.000 0.00 0.00 0.00 4.58
5708 6916 2.036733 CAGGGACGAGTTCAAGGTGTTA 59.963 50.000 0.00 0.00 0.00 2.41
5711 6919 3.576648 GGACGAGTTCAAGGTGTTAGAG 58.423 50.000 0.00 0.00 0.00 2.43
5736 6947 3.005554 CTCAACACCAACATAGAGCTGG 58.994 50.000 0.00 0.00 36.24 4.85
5747 6958 1.179174 TAGAGCTGGTATGCGGCGAT 61.179 55.000 12.98 3.86 38.13 4.58
5769 6980 1.063166 GCGCTGCCACTAATTCAGC 59.937 57.895 0.00 6.10 46.98 4.26
5781 6992 2.299326 AATTCAGCAGCTGGAGGTTT 57.701 45.000 22.62 2.11 31.51 3.27
5791 7002 1.001020 TGGAGGTTTGCGGCATCAT 60.001 52.632 2.28 0.00 0.00 2.45
5796 7010 1.455383 GGTTTGCGGCATCATAGGGG 61.455 60.000 2.28 0.00 0.00 4.79
5797 7011 0.751643 GTTTGCGGCATCATAGGGGT 60.752 55.000 2.28 0.00 0.00 4.95
5812 7026 4.643387 GGTGGACGTTGGCCTGCT 62.643 66.667 3.32 0.00 0.00 4.24
5836 7050 1.480954 GAACATGCCCCTACTCGAGAA 59.519 52.381 21.68 0.00 0.00 2.87
5843 7057 0.970937 CCCTACTCGAGAAGGCCACA 60.971 60.000 21.68 0.00 0.00 4.17
5899 7113 2.817396 GCGTGAGGCAGAGGAAGC 60.817 66.667 0.00 0.00 42.87 3.86
5903 7117 2.511145 GAGGCAGAGGAAGCGCTG 60.511 66.667 12.58 0.00 35.28 5.18
5904 7118 4.093291 AGGCAGAGGAAGCGCTGG 62.093 66.667 12.58 0.00 32.83 4.85
5906 7120 4.087892 GCAGAGGAAGCGCTGGGA 62.088 66.667 12.58 0.00 32.83 4.37
5919 7133 4.329545 TGGGACAGGCGAGCCAAC 62.330 66.667 17.18 6.76 38.92 3.77
5920 7134 4.329545 GGGACAGGCGAGCCAACA 62.330 66.667 17.18 0.00 38.92 3.33
5924 7138 1.228245 ACAGGCGAGCCAACAACAT 60.228 52.632 17.18 0.00 38.92 2.71
5933 7147 1.133513 AGCCAACAACATCCCAACAGA 60.134 47.619 0.00 0.00 0.00 3.41
5940 7154 0.321671 ACATCCCAACAGACCAGTCG 59.678 55.000 0.00 0.00 34.09 4.18
5967 7184 4.673441 CATAAAGAGATGGAACGACGAGT 58.327 43.478 0.00 0.00 0.00 4.18
5993 7210 7.872113 ATGTTCCTCTTCATTTCAGGTAATC 57.128 36.000 0.00 0.00 0.00 1.75
5995 7212 7.230747 TGTTCCTCTTCATTTCAGGTAATCAA 58.769 34.615 0.00 0.00 0.00 2.57
5996 7213 7.723616 TGTTCCTCTTCATTTCAGGTAATCAAA 59.276 33.333 0.00 0.00 0.00 2.69
5997 7214 7.687941 TCCTCTTCATTTCAGGTAATCAAAC 57.312 36.000 0.00 0.00 0.00 2.93
6001 7218 9.748708 CTCTTCATTTCAGGTAATCAAACAAAA 57.251 29.630 0.00 0.00 0.00 2.44
6005 7222 9.829507 TCATTTCAGGTAATCAAACAAAAATGT 57.170 25.926 0.00 0.00 34.70 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 1.202989 TGTGTAGGCAAAAGCCCATCA 60.203 47.619 2.33 0.00 0.00 3.07
206 210 0.746063 CAGCAAAACTGGGAGCACAA 59.254 50.000 0.00 0.00 43.19 3.33
344 352 9.429359 CAAAACATCTCTCACTACTATCAAACT 57.571 33.333 0.00 0.00 0.00 2.66
375 383 9.874205 AAGTACTAGTACTACTAACAGTCTCAG 57.126 37.037 30.89 0.00 44.96 3.35
613 644 4.638421 ACGTGCCTGCAATTTATTAAGCTA 59.362 37.500 0.00 0.00 0.00 3.32
745 781 1.773052 CAGATCTGGACACATGGGGAT 59.227 52.381 15.38 0.00 0.00 3.85
748 784 2.436911 TGATCAGATCTGGACACATGGG 59.563 50.000 22.42 0.00 0.00 4.00
785 821 2.308570 TGCCTGTTTAGTGGATGTGGAT 59.691 45.455 0.00 0.00 0.00 3.41
788 824 1.470098 GCTGCCTGTTTAGTGGATGTG 59.530 52.381 0.00 0.00 0.00 3.21
789 825 1.352352 AGCTGCCTGTTTAGTGGATGT 59.648 47.619 0.00 0.00 0.00 3.06
809 845 5.478679 GCTGGAGCTAGGAAGATATACAAGA 59.521 44.000 0.00 0.00 38.21 3.02
857 893 7.125204 TGGCTCTCTCTATACCTCTCTCTATAC 59.875 44.444 0.00 0.00 0.00 1.47
861 897 4.239495 TGGCTCTCTCTATACCTCTCTCT 58.761 47.826 0.00 0.00 0.00 3.10
862 898 4.634012 TGGCTCTCTCTATACCTCTCTC 57.366 50.000 0.00 0.00 0.00 3.20
863 899 4.749785 GCTTGGCTCTCTCTATACCTCTCT 60.750 50.000 0.00 0.00 0.00 3.10
864 900 3.506067 GCTTGGCTCTCTCTATACCTCTC 59.494 52.174 0.00 0.00 0.00 3.20
865 901 3.117322 TGCTTGGCTCTCTCTATACCTCT 60.117 47.826 0.00 0.00 0.00 3.69
866 902 3.226777 TGCTTGGCTCTCTCTATACCTC 58.773 50.000 0.00 0.00 0.00 3.85
867 903 3.320610 TGCTTGGCTCTCTCTATACCT 57.679 47.619 0.00 0.00 0.00 3.08
868 904 4.562552 GGATTGCTTGGCTCTCTCTATACC 60.563 50.000 0.00 0.00 0.00 2.73
869 905 4.562552 GGGATTGCTTGGCTCTCTCTATAC 60.563 50.000 0.00 0.00 0.00 1.47
870 906 3.580458 GGGATTGCTTGGCTCTCTCTATA 59.420 47.826 0.00 0.00 0.00 1.31
871 907 2.371510 GGGATTGCTTGGCTCTCTCTAT 59.628 50.000 0.00 0.00 0.00 1.98
872 908 1.765314 GGGATTGCTTGGCTCTCTCTA 59.235 52.381 0.00 0.00 0.00 2.43
873 909 0.545646 GGGATTGCTTGGCTCTCTCT 59.454 55.000 0.00 0.00 0.00 3.10
874 910 0.813210 CGGGATTGCTTGGCTCTCTC 60.813 60.000 0.00 0.00 0.00 3.20
875 911 1.222936 CGGGATTGCTTGGCTCTCT 59.777 57.895 0.00 0.00 0.00 3.10
876 912 2.476320 GCGGGATTGCTTGGCTCTC 61.476 63.158 0.00 0.00 0.00 3.20
877 913 1.626356 TAGCGGGATTGCTTGGCTCT 61.626 55.000 0.00 0.00 44.46 4.09
878 914 1.153168 TAGCGGGATTGCTTGGCTC 60.153 57.895 0.00 0.00 44.46 4.70
906 942 7.415086 TCTCTCTATACCTCCTTTGAGAAACT 58.585 38.462 0.00 0.00 41.42 2.66
917 953 4.287585 TCCTACTGCTCTCTCTATACCTCC 59.712 50.000 0.00 0.00 0.00 4.30
918 954 5.492855 TCCTACTGCTCTCTCTATACCTC 57.507 47.826 0.00 0.00 0.00 3.85
919 955 5.915744 TTCCTACTGCTCTCTCTATACCT 57.084 43.478 0.00 0.00 0.00 3.08
920 956 6.963083 TTTTCCTACTGCTCTCTCTATACC 57.037 41.667 0.00 0.00 0.00 2.73
944 980 6.067217 TGCTAGCTAATTTCTTCTCCCTTT 57.933 37.500 17.23 0.00 0.00 3.11
946 982 5.679601 CTTGCTAGCTAATTTCTTCTCCCT 58.320 41.667 17.23 0.00 0.00 4.20
947 983 4.274705 GCTTGCTAGCTAATTTCTTCTCCC 59.725 45.833 17.23 0.00 44.27 4.30
989 1025 1.589993 AACGCCATGCTCGATCTCG 60.590 57.895 11.67 0.00 41.45 4.04
996 1032 2.045926 ACCTCCAACGCCATGCTC 60.046 61.111 0.00 0.00 0.00 4.26
1052 1088 0.962356 CTTGTCCATGCCCCAGTCAC 60.962 60.000 0.00 0.00 0.00 3.67
1063 1099 0.324943 CCCTTCACGGTCTTGTCCAT 59.675 55.000 0.00 0.00 0.00 3.41
1082 1118 3.426568 GCAGGTTCCACAGCTCGC 61.427 66.667 0.00 0.00 0.00 5.03
1298 1357 7.173907 ACTTGATGAGTGTTTCTTTGATGTAGG 59.826 37.037 0.00 0.00 37.17 3.18
1328 1387 3.200605 ACCATACTGTTGATGCATCTCCA 59.799 43.478 26.32 20.02 0.00 3.86
1343 1402 4.150359 CCTACAAGGATACGGACCATACT 58.850 47.826 0.00 0.00 46.39 2.12
1350 1409 2.391678 GAACCCCTACAAGGATACGGA 58.608 52.381 0.00 0.00 46.39 4.69
1399 1466 1.111277 GGGGACATGGCAAACATACC 58.889 55.000 0.00 0.00 37.84 2.73
1417 1484 0.317479 CTAGATTCGCTTACCCCGGG 59.683 60.000 15.80 15.80 0.00 5.73
1420 1487 1.049402 AGGCTAGATTCGCTTACCCC 58.951 55.000 0.00 0.00 0.00 4.95
1424 1491 2.168521 ACAAGCAGGCTAGATTCGCTTA 59.831 45.455 7.12 0.00 40.80 3.09
1425 1492 1.065854 ACAAGCAGGCTAGATTCGCTT 60.066 47.619 2.01 2.01 43.41 4.68
1428 1495 1.667724 CCAACAAGCAGGCTAGATTCG 59.332 52.381 0.00 0.00 0.00 3.34
1433 1500 2.092968 TCCATACCAACAAGCAGGCTAG 60.093 50.000 0.00 0.00 0.00 3.42
1434 1501 1.912731 TCCATACCAACAAGCAGGCTA 59.087 47.619 0.00 0.00 0.00 3.93
1435 1502 0.698238 TCCATACCAACAAGCAGGCT 59.302 50.000 0.00 0.00 0.00 4.58
1559 1632 1.281899 CCCTTTCGTCTTCATCTCGC 58.718 55.000 0.00 0.00 0.00 5.03
1561 1634 1.744114 GCCCCCTTTCGTCTTCATCTC 60.744 57.143 0.00 0.00 0.00 2.75
1562 1635 0.253327 GCCCCCTTTCGTCTTCATCT 59.747 55.000 0.00 0.00 0.00 2.90
1563 1636 0.253327 AGCCCCCTTTCGTCTTCATC 59.747 55.000 0.00 0.00 0.00 2.92
1564 1637 0.698818 AAGCCCCCTTTCGTCTTCAT 59.301 50.000 0.00 0.00 0.00 2.57
1565 1638 0.476771 AAAGCCCCCTTTCGTCTTCA 59.523 50.000 0.00 0.00 36.59 3.02
1566 1639 0.881796 CAAAGCCCCCTTTCGTCTTC 59.118 55.000 0.00 0.00 39.20 2.87
1571 1644 1.067635 CACAATCAAAGCCCCCTTTCG 60.068 52.381 0.00 0.00 39.20 3.46
1596 1669 2.031069 TCTCAGACCGACGAAGACAAAG 60.031 50.000 0.00 0.00 0.00 2.77
1603 1676 0.605589 TCAGCTCTCAGACCGACGAA 60.606 55.000 0.00 0.00 0.00 3.85
1604 1677 1.003718 TCAGCTCTCAGACCGACGA 60.004 57.895 0.00 0.00 0.00 4.20
1606 1679 0.814457 ATGTCAGCTCTCAGACCGAC 59.186 55.000 0.00 0.00 33.89 4.79
1640 1713 4.035091 TGTGAAGTTTGTCGAAGATGTTGG 59.965 41.667 0.00 0.00 40.67 3.77
1641 1714 5.155509 TGTGAAGTTTGTCGAAGATGTTG 57.844 39.130 0.00 0.00 40.67 3.33
1642 1715 6.929049 TCTATGTGAAGTTTGTCGAAGATGTT 59.071 34.615 0.00 0.00 40.67 2.71
1762 1835 4.624336 CGGCTAGCAACGATAGATCTAT 57.376 45.455 18.24 15.26 41.38 1.98
1764 1837 2.999507 CGGCTAGCAACGATAGATCT 57.000 50.000 18.24 0.00 41.38 2.75
1830 1935 9.830186 ATATGTAGACCATGTATTCTCCTAGTT 57.170 33.333 0.00 0.00 34.86 2.24
1876 2063 4.455533 TGTTTATGCGCAGTTCTGAATTCT 59.544 37.500 18.32 0.00 0.00 2.40
1884 2071 0.793861 TCCGTGTTTATGCGCAGTTC 59.206 50.000 18.32 6.97 0.00 3.01
1896 2083 9.033481 CATGCAATTTCATTATTTATCCGTGTT 57.967 29.630 0.00 0.00 0.00 3.32
1897 2084 7.169645 GCATGCAATTTCATTATTTATCCGTGT 59.830 33.333 14.21 0.00 0.00 4.49
1900 2088 7.640616 TGCATGCAATTTCATTATTTATCCG 57.359 32.000 20.30 0.00 0.00 4.18
1910 2113 4.511454 GCAATGAGATGCATGCAATTTCAT 59.489 37.500 26.68 26.44 45.70 2.57
1922 2335 7.082602 CCTAATGATTGTTAGCAATGAGATGC 58.917 38.462 9.76 0.00 44.61 3.91
1963 2429 6.266103 ACAACCACAATGAATGTCAGAAAGAT 59.734 34.615 0.00 0.00 41.46 2.40
1971 2437 2.318578 CGCACAACCACAATGAATGTC 58.681 47.619 0.00 0.00 41.46 3.06
1986 2459 1.338200 TGCACATGTATGTACCGCACA 60.338 47.619 0.00 0.00 39.39 4.57
1990 2463 2.603110 GACTGTGCACATGTATGTACCG 59.397 50.000 22.00 6.93 39.39 4.02
1996 2469 4.637534 GGAAGATTGACTGTGCACATGTAT 59.362 41.667 22.00 11.44 0.00 2.29
2009 2482 5.175859 TGATTTAGACCACGGAAGATTGAC 58.824 41.667 0.00 0.00 0.00 3.18
2019 2492 2.170607 AGGGACCATGATTTAGACCACG 59.829 50.000 0.00 0.00 0.00 4.94
2022 2495 4.779993 AAGAGGGACCATGATTTAGACC 57.220 45.455 0.00 0.00 0.00 3.85
2025 2498 4.660771 AGGGTAAGAGGGACCATGATTTAG 59.339 45.833 0.00 0.00 38.86 1.85
2027 2500 3.459969 GAGGGTAAGAGGGACCATGATTT 59.540 47.826 0.00 0.00 38.86 2.17
2030 2503 1.364678 TGAGGGTAAGAGGGACCATGA 59.635 52.381 0.00 0.00 38.86 3.07
2031 2504 1.486726 GTGAGGGTAAGAGGGACCATG 59.513 57.143 0.00 0.00 38.86 3.66
2032 2505 1.366435 AGTGAGGGTAAGAGGGACCAT 59.634 52.381 0.00 0.00 38.86 3.55
2033 2506 0.790993 AGTGAGGGTAAGAGGGACCA 59.209 55.000 0.00 0.00 38.86 4.02
2034 2507 1.954035 AAGTGAGGGTAAGAGGGACC 58.046 55.000 0.00 0.00 36.12 4.46
2035 2508 4.368565 AAAAAGTGAGGGTAAGAGGGAC 57.631 45.455 0.00 0.00 0.00 4.46
2090 2563 9.289782 AGCCATTGATCTTATTAATTAGTGGTC 57.710 33.333 8.82 4.65 0.00 4.02
2091 2564 9.289782 GAGCCATTGATCTTATTAATTAGTGGT 57.710 33.333 8.82 0.00 0.00 4.16
2112 2585 9.219603 GCACAAGTATAAAATAGATATGAGCCA 57.780 33.333 0.00 0.00 0.00 4.75
2113 2586 9.442047 AGCACAAGTATAAAATAGATATGAGCC 57.558 33.333 0.00 0.00 0.00 4.70
2128 2601 9.330063 CCTTTTCATATGAGAAGCACAAGTATA 57.670 33.333 24.05 0.00 35.61 1.47
2129 2602 8.049117 TCCTTTTCATATGAGAAGCACAAGTAT 58.951 33.333 24.05 0.00 35.61 2.12
2130 2603 7.394016 TCCTTTTCATATGAGAAGCACAAGTA 58.606 34.615 24.05 6.17 35.61 2.24
2131 2604 6.240894 TCCTTTTCATATGAGAAGCACAAGT 58.759 36.000 24.05 0.00 35.61 3.16
2132 2605 6.677431 GCTCCTTTTCATATGAGAAGCACAAG 60.677 42.308 24.05 18.66 35.61 3.16
2133 2606 5.124457 GCTCCTTTTCATATGAGAAGCACAA 59.876 40.000 24.05 11.89 35.61 3.33
2134 2607 4.637534 GCTCCTTTTCATATGAGAAGCACA 59.362 41.667 24.05 12.68 35.61 4.57
2135 2608 4.880696 AGCTCCTTTTCATATGAGAAGCAC 59.119 41.667 24.05 16.75 35.61 4.40
2136 2609 5.108187 AGCTCCTTTTCATATGAGAAGCA 57.892 39.130 24.05 13.37 35.61 3.91
2137 2610 6.989169 TCTTAGCTCCTTTTCATATGAGAAGC 59.011 38.462 24.05 16.79 35.61 3.86
2138 2611 7.656948 CCTCTTAGCTCCTTTTCATATGAGAAG 59.343 40.741 22.99 22.99 36.39 2.85
2139 2612 7.419518 CCCTCTTAGCTCCTTTTCATATGAGAA 60.420 40.741 5.39 7.01 0.00 2.87
2140 2613 6.042552 CCCTCTTAGCTCCTTTTCATATGAGA 59.957 42.308 5.39 0.00 0.00 3.27
2141 2614 6.229733 CCCTCTTAGCTCCTTTTCATATGAG 58.770 44.000 5.39 0.00 0.00 2.90
2142 2615 5.072329 CCCCTCTTAGCTCCTTTTCATATGA 59.928 44.000 0.00 0.00 0.00 2.15
2143 2616 5.312079 CCCCTCTTAGCTCCTTTTCATATG 58.688 45.833 0.00 0.00 0.00 1.78
2144 2617 4.202514 GCCCCTCTTAGCTCCTTTTCATAT 60.203 45.833 0.00 0.00 0.00 1.78
2145 2618 3.136626 GCCCCTCTTAGCTCCTTTTCATA 59.863 47.826 0.00 0.00 0.00 2.15
2146 2619 2.092158 GCCCCTCTTAGCTCCTTTTCAT 60.092 50.000 0.00 0.00 0.00 2.57
2147 2620 1.282157 GCCCCTCTTAGCTCCTTTTCA 59.718 52.381 0.00 0.00 0.00 2.69
2148 2621 1.408961 GGCCCCTCTTAGCTCCTTTTC 60.409 57.143 0.00 0.00 0.00 2.29
2149 2622 0.626382 GGCCCCTCTTAGCTCCTTTT 59.374 55.000 0.00 0.00 0.00 2.27
2150 2623 0.550147 TGGCCCCTCTTAGCTCCTTT 60.550 55.000 0.00 0.00 0.00 3.11
2151 2624 0.327964 ATGGCCCCTCTTAGCTCCTT 60.328 55.000 0.00 0.00 0.00 3.36
2152 2625 1.059006 CATGGCCCCTCTTAGCTCCT 61.059 60.000 0.00 0.00 0.00 3.69
2153 2626 1.348775 ACATGGCCCCTCTTAGCTCC 61.349 60.000 0.00 0.00 0.00 4.70
2154 2627 0.548510 AACATGGCCCCTCTTAGCTC 59.451 55.000 0.00 0.00 0.00 4.09
2155 2628 1.893315 TAACATGGCCCCTCTTAGCT 58.107 50.000 0.00 0.00 0.00 3.32
2156 2629 2.729028 TTAACATGGCCCCTCTTAGC 57.271 50.000 0.00 0.00 0.00 3.09
2157 2630 4.399303 CAGTTTTAACATGGCCCCTCTTAG 59.601 45.833 0.00 0.00 0.00 2.18
2158 2631 4.340617 CAGTTTTAACATGGCCCCTCTTA 58.659 43.478 0.00 0.00 0.00 2.10
2159 2632 3.165071 CAGTTTTAACATGGCCCCTCTT 58.835 45.455 0.00 0.00 0.00 2.85
2160 2633 2.807676 CAGTTTTAACATGGCCCCTCT 58.192 47.619 0.00 0.00 0.00 3.69
2161 2634 1.204704 GCAGTTTTAACATGGCCCCTC 59.795 52.381 0.00 0.00 0.00 4.30
2162 2635 1.203174 AGCAGTTTTAACATGGCCCCT 60.203 47.619 0.00 0.00 0.00 4.79
2163 2636 1.204704 GAGCAGTTTTAACATGGCCCC 59.795 52.381 0.00 0.00 0.00 5.80
2164 2637 1.892474 TGAGCAGTTTTAACATGGCCC 59.108 47.619 0.00 0.00 0.00 5.80
2165 2638 3.658757 TTGAGCAGTTTTAACATGGCC 57.341 42.857 0.00 0.00 0.00 5.36
2166 2639 5.466393 ACAATTTGAGCAGTTTTAACATGGC 59.534 36.000 2.79 0.00 0.00 4.40
2167 2640 7.481275 AACAATTTGAGCAGTTTTAACATGG 57.519 32.000 2.79 0.00 0.00 3.66
2174 2647 9.979578 TCACATATTAACAATTTGAGCAGTTTT 57.020 25.926 2.79 0.00 0.00 2.43
2213 2686 8.090788 TCACTTTCATATATATAGGGGAAGCC 57.909 38.462 15.26 0.00 0.00 4.35
2219 2692 8.861086 AGCGGTATCACTTTCATATATATAGGG 58.139 37.037 4.66 0.00 0.00 3.53
2223 2696 8.260818 AGCAAGCGGTATCACTTTCATATATAT 58.739 33.333 0.00 0.00 0.00 0.86
2224 2697 7.611770 AGCAAGCGGTATCACTTTCATATATA 58.388 34.615 0.00 0.00 0.00 0.86
2225 2698 6.467677 AGCAAGCGGTATCACTTTCATATAT 58.532 36.000 0.00 0.00 0.00 0.86
2239 2721 2.434185 CCGAGCAAGCAAGCGGTA 60.434 61.111 11.21 0.00 38.99 4.02
2242 2724 4.157958 GAGCCGAGCAAGCAAGCG 62.158 66.667 0.00 0.00 40.15 4.68
2243 2725 2.745492 AGAGCCGAGCAAGCAAGC 60.745 61.111 0.00 0.00 0.00 4.01
2244 2726 2.451167 CGAGAGCCGAGCAAGCAAG 61.451 63.158 0.00 0.00 41.76 4.01
2245 2727 2.433145 CGAGAGCCGAGCAAGCAA 60.433 61.111 0.00 0.00 41.76 3.91
2300 2786 3.141488 CGGCAGCGAGAGGTAGGT 61.141 66.667 0.00 0.00 41.81 3.08
2460 3040 4.039357 GCACCTGCACAGCTGCTG 62.039 66.667 27.02 27.02 44.57 4.41
2461 3041 4.266543 AGCACCTGCACAGCTGCT 62.267 61.111 15.27 13.45 43.44 4.24
2462 3042 3.735029 GAGCACCTGCACAGCTGC 61.735 66.667 15.27 9.45 45.16 5.25
2463 3043 3.420606 CGAGCACCTGCACAGCTG 61.421 66.667 13.48 13.48 45.16 4.24
2464 3044 3.466791 AACGAGCACCTGCACAGCT 62.467 57.895 2.69 2.69 45.16 4.24
2465 3045 2.974698 AACGAGCACCTGCACAGC 60.975 61.111 0.00 0.00 45.16 4.40
2466 3046 2.610694 CCAACGAGCACCTGCACAG 61.611 63.158 0.00 0.00 45.16 3.66
2467 3047 2.591429 CCAACGAGCACCTGCACA 60.591 61.111 0.00 0.00 45.16 4.57
2468 3048 4.030452 GCCAACGAGCACCTGCAC 62.030 66.667 0.00 0.00 45.16 4.57
2474 3054 4.465512 CATGCCGCCAACGAGCAC 62.466 66.667 0.00 0.00 44.37 4.40
2486 3066 3.818787 CTGTGAAGCCGCCATGCC 61.819 66.667 0.00 0.00 0.00 4.40
2487 3067 4.487412 GCTGTGAAGCCGCCATGC 62.487 66.667 0.00 0.00 0.00 4.06
2488 3068 4.170062 CGCTGTGAAGCCGCCATG 62.170 66.667 0.00 0.00 0.00 3.66
2496 3076 4.473520 ATCCCCGCCGCTGTGAAG 62.474 66.667 0.00 0.00 0.00 3.02
2554 3134 2.556189 CGTCAGATCTATGGAGGGTGAG 59.444 54.545 0.00 0.00 0.00 3.51
2564 3144 1.167155 AGCCGTCGCGTCAGATCTAT 61.167 55.000 5.77 0.00 41.18 1.98
2619 3199 3.057548 CAGGAGGCATGCACGCAA 61.058 61.111 21.36 0.00 0.00 4.85
2664 3245 1.699083 TGAAGCAAGACCACCAGATCA 59.301 47.619 0.00 0.00 0.00 2.92
2695 3276 2.239400 CGCTACATCTAGGTCATCCCA 58.761 52.381 0.00 0.00 34.66 4.37
2773 3364 4.514577 CACTGCTACCTCCGCCCG 62.515 72.222 0.00 0.00 0.00 6.13
2810 3409 4.379243 CCGAAGCTGGTCCGCACT 62.379 66.667 8.15 0.00 0.00 4.40
2856 3474 3.154473 AAGCATAGGAGCCGCCGA 61.154 61.111 0.00 0.00 43.43 5.54
2867 3485 1.451927 CCGGCAAGCTCCAAGCATA 60.452 57.895 1.29 0.00 45.56 3.14
2910 3528 1.523711 CACCTTCCGCACACACACT 60.524 57.895 0.00 0.00 0.00 3.55
2916 3534 3.948719 GACCCCACCTTCCGCACA 61.949 66.667 0.00 0.00 0.00 4.57
2922 3540 1.674651 GCGGAAAGACCCCACCTTC 60.675 63.158 0.00 0.00 34.64 3.46
2927 3545 2.920912 ACGAGCGGAAAGACCCCA 60.921 61.111 0.00 0.00 34.64 4.96
3068 3687 2.108976 CCGCACGGCCATAGTCAT 59.891 61.111 2.24 0.00 0.00 3.06
3088 3707 1.533273 ACACCCTGACTACCACGCT 60.533 57.895 0.00 0.00 0.00 5.07
3098 3717 0.250858 CACTGAATGCCACACCCTGA 60.251 55.000 0.00 0.00 0.00 3.86
3100 3719 1.075482 CCACTGAATGCCACACCCT 59.925 57.895 0.00 0.00 0.00 4.34
3114 3733 3.991051 CCGACACTCACCGCCACT 61.991 66.667 0.00 0.00 0.00 4.00
3129 3748 4.958897 TGTTTTCACCCCCGGCCG 62.959 66.667 21.04 21.04 0.00 6.13
3138 3757 6.721571 TCCGAAGATAGAACATGTTTTCAC 57.278 37.500 13.36 5.10 0.00 3.18
3146 3765 4.608948 GGTCCATCCGAAGATAGAACAT 57.391 45.455 0.00 0.00 29.17 2.71
3209 3829 1.079819 CACGACGGGCAATGAGAGT 60.080 57.895 0.00 0.00 0.00 3.24
3269 3889 1.153628 GTTATGACACCGGAGCGCT 60.154 57.895 11.27 11.27 0.00 5.92
3288 3908 3.758172 GGCGGCACCTTCAGAAAA 58.242 55.556 3.07 0.00 34.51 2.29
3313 3935 2.004583 CCACATACGACGAACCATGT 57.995 50.000 0.00 2.72 31.91 3.21
3340 3962 2.669569 AACATGCTGCCGCGAAGT 60.670 55.556 8.23 0.00 39.65 3.01
3349 3971 2.447250 GCATCAATCGTGAACATGCTG 58.553 47.619 0.00 0.00 37.30 4.41
3350 3972 1.402968 GGCATCAATCGTGAACATGCT 59.597 47.619 0.00 0.00 37.42 3.79
3362 3985 0.685458 GAGCAACTGGGGGCATCAAT 60.685 55.000 0.00 0.00 0.00 2.57
3367 3990 1.211949 GTATAAGAGCAACTGGGGGCA 59.788 52.381 0.00 0.00 0.00 5.36
3369 3992 2.746472 GCAGTATAAGAGCAACTGGGGG 60.746 54.545 4.09 0.00 40.76 5.40
3374 3998 3.643792 CCCCTAGCAGTATAAGAGCAACT 59.356 47.826 0.00 0.00 0.00 3.16
3384 4008 1.559682 CAACACCACCCCTAGCAGTAT 59.440 52.381 0.00 0.00 0.00 2.12
3387 4011 1.675641 GCAACACCACCCCTAGCAG 60.676 63.158 0.00 0.00 0.00 4.24
3390 4014 1.675641 GCAGCAACACCACCCCTAG 60.676 63.158 0.00 0.00 0.00 3.02
3391 4015 2.434331 GCAGCAACACCACCCCTA 59.566 61.111 0.00 0.00 0.00 3.53
3392 4016 4.954970 CGCAGCAACACCACCCCT 62.955 66.667 0.00 0.00 0.00 4.79
3405 4029 2.671370 ATCATAGGCACTGGGCGCAG 62.671 60.000 27.57 27.57 46.16 5.18
3406 4030 1.406860 TATCATAGGCACTGGGCGCA 61.407 55.000 10.83 2.47 46.16 6.09
3407 4031 0.036010 ATATCATAGGCACTGGGCGC 60.036 55.000 0.00 0.00 46.16 6.53
3408 4032 3.827008 ATATATCATAGGCACTGGGCG 57.173 47.619 0.00 0.00 46.16 6.13
3409 4033 7.546250 AGTATATATATCATAGGCACTGGGC 57.454 40.000 0.00 0.00 41.52 5.36
3410 4034 9.815306 AGTAGTATATATATCATAGGCACTGGG 57.185 37.037 0.00 0.00 41.52 4.45
3471 4095 9.607333 CATGGTAGTATATGAGATATATGGGGT 57.393 37.037 0.00 0.00 30.98 4.95
3472 4096 9.607333 ACATGGTAGTATATGAGATATATGGGG 57.393 37.037 0.00 0.00 30.98 4.96
3600 4224 9.639601 CAGATACTACATACAACTCACTTTGAA 57.360 33.333 0.00 0.00 0.00 2.69
3601 4225 8.803235 ACAGATACTACATACAACTCACTTTGA 58.197 33.333 0.00 0.00 0.00 2.69
3602 4226 8.988064 ACAGATACTACATACAACTCACTTTG 57.012 34.615 0.00 0.00 0.00 2.77
3603 4227 8.803235 TGACAGATACTACATACAACTCACTTT 58.197 33.333 0.00 0.00 0.00 2.66
3604 4228 8.349568 TGACAGATACTACATACAACTCACTT 57.650 34.615 0.00 0.00 0.00 3.16
3605 4229 7.939784 TGACAGATACTACATACAACTCACT 57.060 36.000 0.00 0.00 0.00 3.41
3606 4230 8.981724 TTTGACAGATACTACATACAACTCAC 57.018 34.615 0.00 0.00 0.00 3.51
3754 4378 9.606631 GCCCATGGTTTTTATTATATTTGTGAA 57.393 29.630 11.73 0.00 0.00 3.18
3755 4379 8.762645 TGCCCATGGTTTTTATTATATTTGTGA 58.237 29.630 11.73 0.00 0.00 3.58
3756 4380 8.954950 TGCCCATGGTTTTTATTATATTTGTG 57.045 30.769 11.73 0.00 0.00 3.33
3757 4381 9.389755 GTTGCCCATGGTTTTTATTATATTTGT 57.610 29.630 11.73 0.00 0.00 2.83
3758 4382 9.612066 AGTTGCCCATGGTTTTTATTATATTTG 57.388 29.630 11.73 0.00 0.00 2.32
3760 4384 9.612066 CAAGTTGCCCATGGTTTTTATTATATT 57.388 29.630 11.73 0.00 0.00 1.28
3761 4385 7.714813 GCAAGTTGCCCATGGTTTTTATTATAT 59.285 33.333 17.36 0.00 37.42 0.86
3762 4386 7.044798 GCAAGTTGCCCATGGTTTTTATTATA 58.955 34.615 17.36 0.00 37.42 0.98
3763 4387 5.879777 GCAAGTTGCCCATGGTTTTTATTAT 59.120 36.000 17.36 0.00 37.42 1.28
3764 4388 5.221722 TGCAAGTTGCCCATGGTTTTTATTA 60.222 36.000 24.59 0.00 44.23 0.98
3765 4389 4.071423 GCAAGTTGCCCATGGTTTTTATT 58.929 39.130 17.36 0.00 37.42 1.40
3766 4390 3.072184 TGCAAGTTGCCCATGGTTTTTAT 59.928 39.130 24.59 0.00 44.23 1.40
3767 4391 2.435805 TGCAAGTTGCCCATGGTTTTTA 59.564 40.909 24.59 0.00 44.23 1.52
3768 4392 1.211457 TGCAAGTTGCCCATGGTTTTT 59.789 42.857 24.59 0.00 44.23 1.94
3769 4393 0.835941 TGCAAGTTGCCCATGGTTTT 59.164 45.000 24.59 0.00 44.23 2.43
3770 4394 0.835941 TTGCAAGTTGCCCATGGTTT 59.164 45.000 24.59 0.00 44.23 3.27
3771 4395 1.058284 ATTGCAAGTTGCCCATGGTT 58.942 45.000 24.59 0.00 44.23 3.67
3772 4396 1.058284 AATTGCAAGTTGCCCATGGT 58.942 45.000 24.59 1.85 44.23 3.55
3773 4397 2.188062 AAATTGCAAGTTGCCCATGG 57.812 45.000 24.59 4.14 44.23 3.66
3854 4478 9.784531 CTTTCCAATGATGTTGGATATACTACT 57.215 33.333 10.06 0.00 46.85 2.57
3855 4479 9.561069 ACTTTCCAATGATGTTGGATATACTAC 57.439 33.333 10.06 0.00 46.85 2.73
3856 4480 9.559732 CACTTTCCAATGATGTTGGATATACTA 57.440 33.333 10.06 0.00 46.85 1.82
3857 4481 8.274322 TCACTTTCCAATGATGTTGGATATACT 58.726 33.333 10.06 0.00 46.85 2.12
3858 4482 8.345565 GTCACTTTCCAATGATGTTGGATATAC 58.654 37.037 10.06 2.68 46.85 1.47
3859 4483 8.052141 TGTCACTTTCCAATGATGTTGGATATA 58.948 33.333 10.06 0.00 46.85 0.86
3860 4484 6.891361 TGTCACTTTCCAATGATGTTGGATAT 59.109 34.615 10.06 0.00 46.85 1.63
3861 4485 6.150976 GTGTCACTTTCCAATGATGTTGGATA 59.849 38.462 10.06 5.29 46.85 2.59
3862 4486 5.047802 GTGTCACTTTCCAATGATGTTGGAT 60.048 40.000 10.06 0.00 46.85 3.41
3863 4487 4.278170 GTGTCACTTTCCAATGATGTTGGA 59.722 41.667 5.45 5.45 46.08 3.53
3864 4488 4.279169 AGTGTCACTTTCCAATGATGTTGG 59.721 41.667 0.00 0.38 40.87 3.77
3865 4489 5.443185 AGTGTCACTTTCCAATGATGTTG 57.557 39.130 0.00 0.00 0.00 3.33
3866 4490 6.428159 GTCTAGTGTCACTTTCCAATGATGTT 59.572 38.462 11.54 0.00 0.00 2.71
3867 4491 5.934625 GTCTAGTGTCACTTTCCAATGATGT 59.065 40.000 11.54 0.00 0.00 3.06
3868 4492 6.169094 AGTCTAGTGTCACTTTCCAATGATG 58.831 40.000 11.54 0.00 0.00 3.07
3869 4493 6.365970 AGTCTAGTGTCACTTTCCAATGAT 57.634 37.500 11.54 0.00 0.00 2.45
3870 4494 5.564848 CGAGTCTAGTGTCACTTTCCAATGA 60.565 44.000 11.54 0.00 0.00 2.57
3871 4495 4.623167 CGAGTCTAGTGTCACTTTCCAATG 59.377 45.833 11.54 0.00 0.00 2.82
3872 4496 4.281182 ACGAGTCTAGTGTCACTTTCCAAT 59.719 41.667 11.54 0.00 0.00 3.16
3873 4497 3.635373 ACGAGTCTAGTGTCACTTTCCAA 59.365 43.478 11.54 0.00 0.00 3.53
3874 4498 3.220110 ACGAGTCTAGTGTCACTTTCCA 58.780 45.455 11.54 0.00 0.00 3.53
3875 4499 3.919223 ACGAGTCTAGTGTCACTTTCC 57.081 47.619 11.54 0.00 0.00 3.13
3876 4500 3.982058 CCAACGAGTCTAGTGTCACTTTC 59.018 47.826 11.54 3.96 0.00 2.62
3877 4501 3.635373 TCCAACGAGTCTAGTGTCACTTT 59.365 43.478 11.54 0.00 0.00 2.66
3886 4510 5.721232 AGGTACATTTTCCAACGAGTCTAG 58.279 41.667 0.00 0.00 0.00 2.43
3894 4519 8.192110 TCACAAAGTTAAGGTACATTTTCCAAC 58.808 33.333 0.00 0.00 0.00 3.77
3898 4523 9.394477 GTCATCACAAAGTTAAGGTACATTTTC 57.606 33.333 0.00 0.00 0.00 2.29
3908 4533 5.862924 ATCGGTGTCATCACAAAGTTAAG 57.137 39.130 0.98 0.00 45.45 1.85
3989 5093 4.133820 TGCATGATTTACCAATACCTCGG 58.866 43.478 0.00 0.00 0.00 4.63
4017 5132 6.559157 GGGGGAGAGAATAAAGAGAGGAATAA 59.441 42.308 0.00 0.00 0.00 1.40
4031 5152 1.493871 CTGAATGCAGGGGGAGAGAAT 59.506 52.381 0.00 0.00 38.51 2.40
4032 5153 0.914644 CTGAATGCAGGGGGAGAGAA 59.085 55.000 0.00 0.00 38.51 2.87
4034 5155 0.469070 CTCTGAATGCAGGGGGAGAG 59.531 60.000 0.00 0.00 42.53 3.20
4035 5156 2.612760 CTCTGAATGCAGGGGGAGA 58.387 57.895 0.00 0.00 42.53 3.71
4061 5196 8.420374 AATCAACATGCATGAAAAATCTGATC 57.580 30.769 32.75 0.00 0.00 2.92
4077 5216 3.128242 GGTCAGAGGCTTGAATCAACATG 59.872 47.826 0.00 0.00 0.00 3.21
4078 5217 3.009916 AGGTCAGAGGCTTGAATCAACAT 59.990 43.478 0.00 0.00 0.00 2.71
4103 5243 2.910688 ATAAGCACCTATCCACACCG 57.089 50.000 0.00 0.00 0.00 4.94
4147 5287 2.685388 TCAACGAAGCAACATGTTTCCA 59.315 40.909 8.77 0.00 34.65 3.53
4159 5299 4.203563 CCTTTAAAACACGTTCAACGAAGC 59.796 41.667 18.84 0.00 46.05 3.86
4178 5318 0.475044 TACTTCCAACACCGCCCTTT 59.525 50.000 0.00 0.00 0.00 3.11
4185 5325 4.215613 GGTGATGAGTTTACTTCCAACACC 59.784 45.833 12.19 12.19 37.49 4.16
4189 5329 4.062293 CGTGGTGATGAGTTTACTTCCAA 58.938 43.478 0.00 0.00 0.00 3.53
4200 5340 2.516923 GTTACGAGTCGTGGTGATGAG 58.483 52.381 27.85 0.00 41.39 2.90
4265 5405 4.329545 TTGACAGGGTGGAGCGGC 62.330 66.667 0.00 0.00 0.00 6.53
4268 5408 2.360475 GCCTTGACAGGGTGGAGC 60.360 66.667 5.38 0.00 41.21 4.70
4271 5411 0.744414 CATACGCCTTGACAGGGTGG 60.744 60.000 20.09 8.40 41.21 4.61
4272 5412 0.249120 TCATACGCCTTGACAGGGTG 59.751 55.000 15.14 15.14 41.21 4.61
4273 5413 0.537188 CTCATACGCCTTGACAGGGT 59.463 55.000 5.38 0.00 41.21 4.34
4284 5424 1.197910 GCACGGAGTAACTCATACGC 58.802 55.000 0.00 0.00 41.61 4.42
4287 5427 3.857052 CTTTGGCACGGAGTAACTCATA 58.143 45.455 0.00 0.00 41.61 2.15
4289 5429 1.876416 GCTTTGGCACGGAGTAACTCA 60.876 52.381 0.00 0.00 41.61 3.41
4312 5452 6.645790 ATTGATGTTCATATCTTTCAGCCC 57.354 37.500 0.00 0.00 0.00 5.19
4313 5453 7.977853 ACAAATTGATGTTCATATCTTTCAGCC 59.022 33.333 0.00 0.00 0.00 4.85
4322 5462 6.982141 GCACCATGACAAATTGATGTTCATAT 59.018 34.615 0.00 0.00 32.57 1.78
4323 5463 6.331845 GCACCATGACAAATTGATGTTCATA 58.668 36.000 0.00 0.00 32.57 2.15
4328 5468 2.898612 TGGCACCATGACAAATTGATGT 59.101 40.909 0.00 0.00 28.38 3.06
4329 5469 3.193903 TCTGGCACCATGACAAATTGATG 59.806 43.478 0.00 0.00 33.21 3.07
4330 5470 3.433343 TCTGGCACCATGACAAATTGAT 58.567 40.909 0.00 0.00 33.21 2.57
4332 5472 3.880047 ATCTGGCACCATGACAAATTG 57.120 42.857 0.00 0.00 33.21 2.32
4339 5479 5.263599 ACATTCTTTTATCTGGCACCATGA 58.736 37.500 0.00 0.00 0.00 3.07
4340 5480 5.587388 ACATTCTTTTATCTGGCACCATG 57.413 39.130 0.00 0.00 0.00 3.66
4347 5487 9.643693 ACATTTAAGCAACATTCTTTTATCTGG 57.356 29.630 0.00 0.00 0.00 3.86
4357 5497 4.685628 CACCACCACATTTAAGCAACATTC 59.314 41.667 0.00 0.00 0.00 2.67
4358 5498 4.100808 ACACCACCACATTTAAGCAACATT 59.899 37.500 0.00 0.00 0.00 2.71
4359 5499 3.640967 ACACCACCACATTTAAGCAACAT 59.359 39.130 0.00 0.00 0.00 2.71
4363 5503 1.339610 GCACACCACCACATTTAAGCA 59.660 47.619 0.00 0.00 0.00 3.91
4364 5504 1.336795 GGCACACCACCACATTTAAGC 60.337 52.381 0.00 0.00 35.26 3.09
4365 5505 1.959985 TGGCACACCACCACATTTAAG 59.040 47.619 0.00 0.00 42.67 1.85
4366 5506 2.073252 TGGCACACCACCACATTTAA 57.927 45.000 0.00 0.00 42.67 1.52
4391 5531 9.770097 ACAAACACTCTACCTATCATAATGATG 57.230 33.333 0.00 0.00 37.70 3.07
4396 5536 8.589701 TCTGACAAACACTCTACCTATCATAA 57.410 34.615 0.00 0.00 0.00 1.90
4413 5553 5.837979 TCCCCTTGAATTGATTTCTGACAAA 59.162 36.000 0.00 0.00 35.23 2.83
4417 5557 4.603131 CCTCCCCTTGAATTGATTTCTGA 58.397 43.478 0.00 0.00 35.23 3.27
4418 5558 3.131755 GCCTCCCCTTGAATTGATTTCTG 59.868 47.826 0.00 0.00 35.23 3.02
4420 5560 2.099756 CGCCTCCCCTTGAATTGATTTC 59.900 50.000 0.00 0.00 34.72 2.17
4441 5581 0.461339 CATACACCCTACACACCGCC 60.461 60.000 0.00 0.00 0.00 6.13
4442 5582 0.533491 TCATACACCCTACACACCGC 59.467 55.000 0.00 0.00 0.00 5.68
4443 5583 1.470979 GCTCATACACCCTACACACCG 60.471 57.143 0.00 0.00 0.00 4.94
4446 5586 2.233676 CTGTGCTCATACACCCTACACA 59.766 50.000 0.00 0.00 39.93 3.72
4447 5587 2.418746 CCTGTGCTCATACACCCTACAC 60.419 54.545 0.00 0.00 39.93 2.90
4448 5588 1.831106 CCTGTGCTCATACACCCTACA 59.169 52.381 0.00 0.00 39.93 2.74
4449 5589 1.139058 CCCTGTGCTCATACACCCTAC 59.861 57.143 0.00 0.00 39.93 3.18
4450 5590 1.007842 TCCCTGTGCTCATACACCCTA 59.992 52.381 0.00 0.00 39.93 3.53
4451 5591 0.252696 TCCCTGTGCTCATACACCCT 60.253 55.000 0.00 0.00 39.93 4.34
4453 5593 0.179000 CCTCCCTGTGCTCATACACC 59.821 60.000 0.00 0.00 39.93 4.16
4454 5594 1.134670 GTCCTCCCTGTGCTCATACAC 60.135 57.143 0.00 0.00 41.10 2.90
4456 5596 0.103208 CGTCCTCCCTGTGCTCATAC 59.897 60.000 0.00 0.00 0.00 2.39
4467 5617 2.585153 GAAAGCCCTCGTCCTCCC 59.415 66.667 0.00 0.00 0.00 4.30
4476 5626 1.489230 CCTTATGTACCGGAAAGCCCT 59.511 52.381 9.46 0.00 0.00 5.19
4488 5638 8.202137 GCTATAAGACAACACCTTCCTTATGTA 58.798 37.037 0.00 0.00 33.59 2.29
4542 5692 4.265073 AGGCTTAGGTACAGAAAGCATTG 58.735 43.478 20.71 0.00 45.86 2.82
4649 5799 3.307480 CGTTGAAATAGGTCTCCCCAGTT 60.307 47.826 0.00 0.00 34.66 3.16
4677 5827 4.322574 CCACTGGATCATGCACCTATCTAG 60.323 50.000 13.36 13.36 35.16 2.43
4714 5864 2.520458 CACCTTGGCTGGGGTCAA 59.480 61.111 2.53 0.00 35.60 3.18
4746 5896 4.771590 TGATGAGGTCAAGCATCAAAAC 57.228 40.909 0.00 0.00 45.55 2.43
4791 5947 7.217200 TGATTTATGCCTATAACAGTGGAGAC 58.783 38.462 0.00 0.00 0.00 3.36
4802 5958 5.337894 GCTCTCCTGCTGATTTATGCCTATA 60.338 44.000 0.00 0.00 0.00 1.31
4803 5959 4.565236 GCTCTCCTGCTGATTTATGCCTAT 60.565 45.833 0.00 0.00 0.00 2.57
4811 5973 2.641305 GATGTGCTCTCCTGCTGATTT 58.359 47.619 0.00 0.00 0.00 2.17
4813 5975 0.469070 GGATGTGCTCTCCTGCTGAT 59.531 55.000 0.00 0.00 0.00 2.90
4814 5976 1.620739 GGGATGTGCTCTCCTGCTGA 61.621 60.000 0.00 0.00 33.05 4.26
4815 5977 1.153208 GGGATGTGCTCTCCTGCTG 60.153 63.158 4.87 0.00 33.05 4.41
4842 6004 5.310331 TGTGGATGGCTAATCTATGAATGGA 59.690 40.000 0.93 0.00 35.43 3.41
4868 6030 3.325870 GCTAGTGTTTTGATTTTGGCCC 58.674 45.455 0.00 0.00 0.00 5.80
4914 6103 1.006220 TACCGGCGCATGCATAGAG 60.006 57.895 19.57 1.33 45.35 2.43
4946 6147 1.642037 GCCGTTTAAACCTCCGGAGC 61.642 60.000 26.87 9.42 43.01 4.70
4980 6181 3.197766 ACGGATAAATCACAGCTCTCCAA 59.802 43.478 0.00 0.00 0.00 3.53
5018 6219 3.339253 TTCAATCTGCTGAGCTGCTAA 57.661 42.857 5.83 0.00 0.00 3.09
5019 6220 3.268330 CTTTCAATCTGCTGAGCTGCTA 58.732 45.455 5.83 0.00 0.00 3.49
5028 6229 8.970859 ATATACTTAAGCACTTTCAATCTGCT 57.029 30.769 1.29 0.00 43.21 4.24
5045 6246 3.203263 TGCCCACAAGCCCAATATACTTA 59.797 43.478 0.00 0.00 0.00 2.24
5090 6291 1.017387 GCTGGAGGCGTCCTATTTTG 58.983 55.000 24.96 9.96 44.30 2.44
5106 6307 2.222213 CGTCGAGTATCTGTAGGAGCTG 59.778 54.545 0.00 0.00 0.00 4.24
5145 6346 2.811317 GAACGGTGGCAGCTCTCG 60.811 66.667 15.48 1.25 0.00 4.04
5189 6390 2.979676 CCTTTGCCAGCACGCAGA 60.980 61.111 0.00 0.00 40.53 4.26
5204 6405 1.690219 GACCCATCATCCTCGTGCCT 61.690 60.000 0.00 0.00 0.00 4.75
5228 6429 4.021925 AGGCACGTCAGCTTCCCC 62.022 66.667 0.00 0.00 34.17 4.81
5333 6535 1.557443 CGTCCACCTCGTCAAAGTGC 61.557 60.000 0.00 0.00 0.00 4.40
5339 6541 2.675423 CCCTCGTCCACCTCGTCA 60.675 66.667 0.00 0.00 0.00 4.35
5381 6583 1.980765 AGCTTGTTCAGATGGACCAGA 59.019 47.619 0.00 0.00 0.00 3.86
5439 6641 2.270205 CCAGCTGTTGAGGCGGAT 59.730 61.111 13.81 0.00 34.52 4.18
5448 6650 1.525995 CGTTGTCACCCCAGCTGTT 60.526 57.895 13.81 0.00 0.00 3.16
5458 6666 2.258726 GGGAAGGGCACGTTGTCAC 61.259 63.158 0.00 0.00 36.18 3.67
5459 6667 2.112297 GGGAAGGGCACGTTGTCA 59.888 61.111 0.00 0.00 36.18 3.58
5520 6728 0.824109 TGATGGATCCACGGTGTCTC 59.176 55.000 18.99 9.54 0.00 3.36
5524 6732 0.528466 CGAGTGATGGATCCACGGTG 60.528 60.000 18.99 0.00 39.38 4.94
5689 6897 2.298163 TCTAACACCTTGAACTCGTCCC 59.702 50.000 0.00 0.00 0.00 4.46
5691 6899 3.982058 CACTCTAACACCTTGAACTCGTC 59.018 47.826 0.00 0.00 0.00 4.20
5711 6919 2.744202 CTCTATGTTGGTGTTGAGGCAC 59.256 50.000 0.00 0.00 38.56 5.01
5760 6971 2.706339 ACCTCCAGCTGCTGAATTAG 57.294 50.000 30.10 19.25 32.44 1.73
5762 6973 1.891150 CAAACCTCCAGCTGCTGAATT 59.109 47.619 30.10 14.93 32.44 2.17
5769 6980 3.741476 GCCGCAAACCTCCAGCTG 61.741 66.667 6.78 6.78 0.00 4.24
5781 6992 2.510411 CACCCCTATGATGCCGCA 59.490 61.111 0.00 0.00 0.00 5.69
5791 7002 3.324108 GGCCAACGTCCACCCCTA 61.324 66.667 0.00 0.00 0.00 3.53
5796 7010 3.357079 CAGCAGGCCAACGTCCAC 61.357 66.667 5.01 0.00 0.00 4.02
5797 7011 4.641645 CCAGCAGGCCAACGTCCA 62.642 66.667 5.01 0.00 0.00 4.02
5825 7039 1.115467 ATGTGGCCTTCTCGAGTAGG 58.885 55.000 28.51 28.51 35.90 3.18
5836 7050 1.305802 TCGAGGTGGTATGTGGCCT 60.306 57.895 3.32 0.00 0.00 5.19
5843 7057 1.330655 CCCTGCAGTCGAGGTGGTAT 61.331 60.000 13.81 0.00 0.00 2.73
5885 7099 2.999648 AGCGCTTCCTCTGCCTCA 61.000 61.111 2.64 0.00 0.00 3.86
5886 7100 2.511145 CAGCGCTTCCTCTGCCTC 60.511 66.667 7.50 0.00 0.00 4.70
5903 7117 3.842925 TTGTTGGCTCGCCTGTCCC 62.843 63.158 9.65 0.00 36.94 4.46
5904 7118 2.281484 TTGTTGGCTCGCCTGTCC 60.281 61.111 9.65 0.00 36.94 4.02
5906 7120 1.228245 ATGTTGTTGGCTCGCCTGT 60.228 52.632 9.65 0.00 36.94 4.00
5919 7133 2.154462 GACTGGTCTGTTGGGATGTTG 58.846 52.381 0.00 0.00 0.00 3.33
5920 7134 1.270839 CGACTGGTCTGTTGGGATGTT 60.271 52.381 0.00 0.00 0.00 2.71
5924 7138 0.757561 TGACGACTGGTCTGTTGGGA 60.758 55.000 0.00 0.00 46.24 4.37
5933 7147 3.162666 TCTCTTTATGGTGACGACTGGT 58.837 45.455 0.00 0.00 0.00 4.00
5940 7154 4.567159 GTCGTTCCATCTCTTTATGGTGAC 59.433 45.833 2.98 6.41 45.67 3.67
5966 7183 8.561738 TTACCTGAAATGAAGAGGAACATAAC 57.438 34.615 0.00 0.00 0.00 1.89
5967 7184 9.396022 GATTACCTGAAATGAAGAGGAACATAA 57.604 33.333 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.