Multiple sequence alignment - TraesCS2D01G501500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G501500 chr2D 100.000 1976 0 0 1 1976 595555938 595557913 0.000000e+00 3650.0
1 TraesCS2D01G501500 chr2D 100.000 311 0 0 2284 2594 595558221 595558531 2.240000e-160 575.0
2 TraesCS2D01G501500 chr2A 95.502 1445 43 10 545 1973 729580399 729581837 0.000000e+00 2289.0
3 TraesCS2D01G501500 chr2A 88.618 246 28 0 2349 2594 729581931 729582176 1.510000e-77 300.0
4 TraesCS2D01G501500 chr2A 85.652 230 26 4 2349 2571 42960777 42960548 4.320000e-58 235.0
5 TraesCS2D01G501500 chr2B 95.971 968 37 2 677 1643 723446286 723447252 0.000000e+00 1570.0
6 TraesCS2D01G501500 chr2B 93.770 305 14 2 1674 1973 723447254 723447558 1.090000e-123 453.0
7 TraesCS2D01G501500 chr2B 85.185 459 43 18 85 528 153614043 153613595 5.090000e-122 448.0
8 TraesCS2D01G501500 chr2B 85.345 232 27 4 2349 2573 58998157 58998388 1.550000e-57 233.0
9 TraesCS2D01G501500 chr3D 97.882 425 9 0 120 544 598338329 598338753 0.000000e+00 736.0
10 TraesCS2D01G501500 chr3D 97.412 425 11 0 120 544 362876498 362876922 0.000000e+00 725.0
11 TraesCS2D01G501500 chr3D 83.983 231 30 4 2348 2571 582266607 582266377 5.620000e-52 215.0
12 TraesCS2D01G501500 chr5D 92.053 453 23 11 1 446 324398962 324399408 2.190000e-175 625.0
13 TraesCS2D01G501500 chr5D 91.982 449 23 11 1 442 555471787 555471345 3.670000e-173 617.0
14 TraesCS2D01G501500 chr7B 85.635 543 55 20 1 528 59619317 59619851 1.360000e-152 549.0
15 TraesCS2D01G501500 chr7B 81.609 87 16 0 1379 1465 440815484 440815570 3.580000e-09 73.1
16 TraesCS2D01G501500 chr4D 98.188 276 5 0 269 544 473839912 473839637 1.400000e-132 483.0
17 TraesCS2D01G501500 chr4D 83.190 232 31 5 2349 2573 473138868 473138638 3.380000e-49 206.0
18 TraesCS2D01G501500 chrUn 86.026 458 44 16 1 446 71345481 71345032 8.400000e-130 473.0
19 TraesCS2D01G501500 chr3A 83.730 504 58 6 41 544 502108495 502108974 3.040000e-124 455.0
20 TraesCS2D01G501500 chr6D 84.519 478 48 15 1 460 386958094 386958563 1.420000e-122 449.0
21 TraesCS2D01G501500 chr5A 82.640 553 51 31 1 528 136639991 136640523 5.090000e-122 448.0
22 TraesCS2D01G501500 chr5B 83.850 452 57 12 3 446 555014131 555013688 1.440000e-112 416.0
23 TraesCS2D01G501500 chr5B 83.691 233 30 5 2349 2573 618269931 618270163 2.020000e-51 213.0
24 TraesCS2D01G501500 chr7A 90.449 178 16 1 2395 2571 696986257 696986080 1.550000e-57 233.0
25 TraesCS2D01G501500 chr7D 83.843 229 29 6 2349 2570 562925585 562925812 7.270000e-51 211.0
26 TraesCS2D01G501500 chr7D 83.550 231 30 5 2348 2571 49806665 49806894 2.620000e-50 209.0
27 TraesCS2D01G501500 chr7D 81.609 87 16 0 1379 1465 423711356 423711442 3.580000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G501500 chr2D 595555938 595558531 2593 False 2112.5 3650 100.0000 1 2594 2 chr2D.!!$F1 2593
1 TraesCS2D01G501500 chr2A 729580399 729582176 1777 False 1294.5 2289 92.0600 545 2594 2 chr2A.!!$F1 2049
2 TraesCS2D01G501500 chr2B 723446286 723447558 1272 False 1011.5 1570 94.8705 677 1973 2 chr2B.!!$F2 1296
3 TraesCS2D01G501500 chr7B 59619317 59619851 534 False 549.0 549 85.6350 1 528 1 chr7B.!!$F1 527
4 TraesCS2D01G501500 chr5A 136639991 136640523 532 False 448.0 448 82.6400 1 528 1 chr5A.!!$F1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 253 0.037605 GCGGAGGAAGAAGGAAACGA 60.038 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1636 1667 2.178235 TGCGAGCTCTCATGCATGC 61.178 57.895 22.25 11.82 36.4 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.388499 ACCATCGTGGGTGCGTCC 62.388 66.667 8.57 0.00 43.37 4.79
23 24 4.386951 CCATCGTGGGTGCGTCCA 62.387 66.667 0.37 0.00 38.11 4.02
24 25 2.815211 CATCGTGGGTGCGTCCAG 60.815 66.667 0.00 0.00 37.50 3.86
25 26 4.082523 ATCGTGGGTGCGTCCAGG 62.083 66.667 10.43 10.43 42.29 4.45
89 90 3.625897 CCAGGAGCACCACGTCCA 61.626 66.667 2.07 0.00 38.94 4.02
90 91 2.047844 CAGGAGCACCACGTCCAG 60.048 66.667 2.07 0.00 38.94 3.86
91 92 4.008933 AGGAGCACCACGTCCAGC 62.009 66.667 2.07 0.00 38.94 4.85
120 121 4.925861 GGCCAGGAGCGCCATCTC 62.926 72.222 9.88 0.00 46.27 2.75
153 154 4.420143 CGAATCGACGGATGGCTT 57.580 55.556 0.00 0.00 31.83 4.35
154 155 1.927210 CGAATCGACGGATGGCTTG 59.073 57.895 0.00 0.00 31.83 4.01
155 156 1.643832 GAATCGACGGATGGCTTGC 59.356 57.895 0.00 0.00 31.83 4.01
156 157 1.078497 AATCGACGGATGGCTTGCA 60.078 52.632 0.00 0.00 31.83 4.08
157 158 0.464373 AATCGACGGATGGCTTGCAT 60.464 50.000 0.00 0.00 31.83 3.96
158 159 0.882042 ATCGACGGATGGCTTGCATC 60.882 55.000 0.00 0.00 0.00 3.91
159 160 2.537560 CGACGGATGGCTTGCATCC 61.538 63.158 9.72 9.72 43.82 3.51
162 163 3.599704 GGATGGCTTGCATCCGGC 61.600 66.667 0.00 0.00 39.16 6.13
183 184 2.741211 GGAAACGCCGGAGTCCAC 60.741 66.667 12.53 6.07 0.00 4.02
184 185 2.741211 GAAACGCCGGAGTCCACC 60.741 66.667 12.53 0.00 0.00 4.61
185 186 4.324991 AAACGCCGGAGTCCACCC 62.325 66.667 12.53 0.00 0.00 4.61
189 190 4.083862 GCCGGAGTCCACCCACTC 62.084 72.222 5.05 0.00 41.99 3.51
201 202 4.835927 CCACTCCATGGTAGCGAC 57.164 61.111 12.58 0.00 44.46 5.19
202 203 1.226974 CCACTCCATGGTAGCGACG 60.227 63.158 12.58 0.00 44.46 5.12
203 204 1.663379 CCACTCCATGGTAGCGACGA 61.663 60.000 12.58 0.00 44.46 4.20
204 205 0.525668 CACTCCATGGTAGCGACGAC 60.526 60.000 12.58 0.00 0.00 4.34
205 206 1.298413 CTCCATGGTAGCGACGACG 60.298 63.158 12.58 2.12 42.93 5.12
206 207 2.278596 CCATGGTAGCGACGACGG 60.279 66.667 9.67 0.00 40.15 4.79
222 223 3.819188 GGTATCGACGACCGTCCT 58.181 61.111 15.74 7.14 41.76 3.85
223 224 1.645997 GGTATCGACGACCGTCCTC 59.354 63.158 15.74 5.10 41.76 3.71
224 225 1.275066 GTATCGACGACCGTCCTCG 59.725 63.158 15.74 12.17 41.76 4.63
225 226 2.528743 TATCGACGACCGTCCTCGC 61.529 63.158 15.74 0.00 41.76 5.03
234 235 4.933064 CGTCCTCGCGGATCAGGC 62.933 72.222 6.13 1.21 42.43 4.85
241 242 3.849951 GCGGATCAGGCGGAGGAA 61.850 66.667 0.00 0.00 0.00 3.36
242 243 2.419198 CGGATCAGGCGGAGGAAG 59.581 66.667 0.00 0.00 0.00 3.46
243 244 2.127869 CGGATCAGGCGGAGGAAGA 61.128 63.158 0.00 0.00 0.00 2.87
244 245 1.676678 CGGATCAGGCGGAGGAAGAA 61.677 60.000 0.00 0.00 0.00 2.52
245 246 0.105778 GGATCAGGCGGAGGAAGAAG 59.894 60.000 0.00 0.00 0.00 2.85
246 247 0.105778 GATCAGGCGGAGGAAGAAGG 59.894 60.000 0.00 0.00 0.00 3.46
247 248 0.325671 ATCAGGCGGAGGAAGAAGGA 60.326 55.000 0.00 0.00 0.00 3.36
248 249 0.544357 TCAGGCGGAGGAAGAAGGAA 60.544 55.000 0.00 0.00 0.00 3.36
249 250 0.324943 CAGGCGGAGGAAGAAGGAAA 59.675 55.000 0.00 0.00 0.00 3.13
250 251 0.325272 AGGCGGAGGAAGAAGGAAAC 59.675 55.000 0.00 0.00 0.00 2.78
251 252 1.019805 GGCGGAGGAAGAAGGAAACG 61.020 60.000 0.00 0.00 0.00 3.60
252 253 0.037605 GCGGAGGAAGAAGGAAACGA 60.038 55.000 0.00 0.00 0.00 3.85
253 254 1.997669 CGGAGGAAGAAGGAAACGAG 58.002 55.000 0.00 0.00 0.00 4.18
254 255 1.404315 CGGAGGAAGAAGGAAACGAGG 60.404 57.143 0.00 0.00 0.00 4.63
255 256 1.624312 GGAGGAAGAAGGAAACGAGGT 59.376 52.381 0.00 0.00 0.00 3.85
256 257 2.038689 GGAGGAAGAAGGAAACGAGGTT 59.961 50.000 0.00 0.00 0.00 3.50
257 258 3.260128 GGAGGAAGAAGGAAACGAGGTTA 59.740 47.826 0.00 0.00 0.00 2.85
258 259 4.496360 GAGGAAGAAGGAAACGAGGTTAG 58.504 47.826 0.00 0.00 0.00 2.34
259 260 3.261137 AGGAAGAAGGAAACGAGGTTAGG 59.739 47.826 0.00 0.00 0.00 2.69
260 261 2.764439 AGAAGGAAACGAGGTTAGGC 57.236 50.000 0.00 0.00 0.00 3.93
261 262 1.975680 AGAAGGAAACGAGGTTAGGCA 59.024 47.619 0.00 0.00 0.00 4.75
262 263 2.572104 AGAAGGAAACGAGGTTAGGCAT 59.428 45.455 0.00 0.00 0.00 4.40
263 264 2.693267 AGGAAACGAGGTTAGGCATC 57.307 50.000 0.00 0.00 0.00 3.91
264 265 2.188817 AGGAAACGAGGTTAGGCATCT 58.811 47.619 0.00 0.00 0.00 2.90
265 266 2.168728 AGGAAACGAGGTTAGGCATCTC 59.831 50.000 0.00 0.00 0.00 2.75
266 267 2.093658 GGAAACGAGGTTAGGCATCTCA 60.094 50.000 0.00 0.00 0.00 3.27
267 268 2.674796 AACGAGGTTAGGCATCTCAC 57.325 50.000 0.00 0.00 0.00 3.51
268 269 0.824759 ACGAGGTTAGGCATCTCACC 59.175 55.000 0.00 0.00 37.50 4.02
269 270 0.249073 CGAGGTTAGGCATCTCACCG 60.249 60.000 0.00 0.00 41.09 4.94
270 271 0.105039 GAGGTTAGGCATCTCACCGG 59.895 60.000 0.00 0.00 41.09 5.28
271 272 1.523938 GGTTAGGCATCTCACCGGC 60.524 63.158 0.00 0.00 28.78 6.13
272 273 1.883084 GTTAGGCATCTCACCGGCG 60.883 63.158 0.00 0.00 0.00 6.46
273 274 3.088941 TTAGGCATCTCACCGGCGG 62.089 63.158 27.06 27.06 0.00 6.13
288 289 4.200283 CGGCGAGTGCTCCCTCTC 62.200 72.222 0.00 0.00 42.25 3.20
289 290 2.757917 GGCGAGTGCTCCCTCTCT 60.758 66.667 0.00 0.00 42.25 3.10
290 291 2.355193 GGCGAGTGCTCCCTCTCTT 61.355 63.158 0.00 0.00 42.25 2.85
291 292 1.140804 GCGAGTGCTCCCTCTCTTC 59.859 63.158 0.00 0.00 38.39 2.87
292 293 1.319614 GCGAGTGCTCCCTCTCTTCT 61.320 60.000 0.00 0.00 38.39 2.85
293 294 0.738389 CGAGTGCTCCCTCTCTTCTC 59.262 60.000 0.00 0.00 31.14 2.87
294 295 1.111277 GAGTGCTCCCTCTCTTCTCC 58.889 60.000 0.00 0.00 0.00 3.71
295 296 0.709992 AGTGCTCCCTCTCTTCTCCT 59.290 55.000 0.00 0.00 0.00 3.69
296 297 1.078656 AGTGCTCCCTCTCTTCTCCTT 59.921 52.381 0.00 0.00 0.00 3.36
297 298 1.905894 GTGCTCCCTCTCTTCTCCTTT 59.094 52.381 0.00 0.00 0.00 3.11
298 299 2.093711 GTGCTCCCTCTCTTCTCCTTTC 60.094 54.545 0.00 0.00 0.00 2.62
299 300 2.225496 TGCTCCCTCTCTTCTCCTTTCT 60.225 50.000 0.00 0.00 0.00 2.52
300 301 2.430694 GCTCCCTCTCTTCTCCTTTCTC 59.569 54.545 0.00 0.00 0.00 2.87
301 302 3.881713 GCTCCCTCTCTTCTCCTTTCTCT 60.882 52.174 0.00 0.00 0.00 3.10
302 303 3.701040 CTCCCTCTCTTCTCCTTTCTCTG 59.299 52.174 0.00 0.00 0.00 3.35
303 304 3.335183 TCCCTCTCTTCTCCTTTCTCTGA 59.665 47.826 0.00 0.00 0.00 3.27
304 305 4.016666 TCCCTCTCTTCTCCTTTCTCTGAT 60.017 45.833 0.00 0.00 0.00 2.90
305 306 4.099881 CCCTCTCTTCTCCTTTCTCTGATG 59.900 50.000 0.00 0.00 0.00 3.07
306 307 4.711355 CCTCTCTTCTCCTTTCTCTGATGT 59.289 45.833 0.00 0.00 0.00 3.06
307 308 5.187576 CCTCTCTTCTCCTTTCTCTGATGTT 59.812 44.000 0.00 0.00 0.00 2.71
308 309 6.295802 CCTCTCTTCTCCTTTCTCTGATGTTT 60.296 42.308 0.00 0.00 0.00 2.83
309 310 6.696411 TCTCTTCTCCTTTCTCTGATGTTTC 58.304 40.000 0.00 0.00 0.00 2.78
310 311 6.496565 TCTCTTCTCCTTTCTCTGATGTTTCT 59.503 38.462 0.00 0.00 0.00 2.52
311 312 7.016072 TCTCTTCTCCTTTCTCTGATGTTTCTT 59.984 37.037 0.00 0.00 0.00 2.52
312 313 7.512992 TCTTCTCCTTTCTCTGATGTTTCTTT 58.487 34.615 0.00 0.00 0.00 2.52
313 314 7.995488 TCTTCTCCTTTCTCTGATGTTTCTTTT 59.005 33.333 0.00 0.00 0.00 2.27
314 315 7.502120 TCTCCTTTCTCTGATGTTTCTTTTG 57.498 36.000 0.00 0.00 0.00 2.44
315 316 6.016777 TCTCCTTTCTCTGATGTTTCTTTTGC 60.017 38.462 0.00 0.00 0.00 3.68
316 317 5.829924 TCCTTTCTCTGATGTTTCTTTTGCT 59.170 36.000 0.00 0.00 0.00 3.91
317 318 6.016777 TCCTTTCTCTGATGTTTCTTTTGCTC 60.017 38.462 0.00 0.00 0.00 4.26
318 319 6.016443 CCTTTCTCTGATGTTTCTTTTGCTCT 60.016 38.462 0.00 0.00 0.00 4.09
319 320 6.551385 TTCTCTGATGTTTCTTTTGCTCTC 57.449 37.500 0.00 0.00 0.00 3.20
320 321 4.687948 TCTCTGATGTTTCTTTTGCTCTCG 59.312 41.667 0.00 0.00 0.00 4.04
321 322 3.187227 TCTGATGTTTCTTTTGCTCTCGC 59.813 43.478 0.00 0.00 0.00 5.03
322 323 3.141398 TGATGTTTCTTTTGCTCTCGCT 58.859 40.909 0.00 0.00 36.97 4.93
323 324 3.058708 TGATGTTTCTTTTGCTCTCGCTG 60.059 43.478 0.00 0.00 36.97 5.18
324 325 1.603802 TGTTTCTTTTGCTCTCGCTGG 59.396 47.619 0.00 0.00 36.97 4.85
325 326 0.593128 TTTCTTTTGCTCTCGCTGGC 59.407 50.000 0.00 0.00 36.97 4.85
326 327 0.250467 TTCTTTTGCTCTCGCTGGCT 60.250 50.000 0.00 0.00 36.97 4.75
327 328 0.608130 TCTTTTGCTCTCGCTGGCTA 59.392 50.000 0.00 0.00 36.97 3.93
328 329 1.208052 TCTTTTGCTCTCGCTGGCTAT 59.792 47.619 0.00 0.00 36.97 2.97
329 330 2.012673 CTTTTGCTCTCGCTGGCTATT 58.987 47.619 0.00 0.00 36.97 1.73
330 331 1.656652 TTTGCTCTCGCTGGCTATTC 58.343 50.000 0.00 0.00 36.97 1.75
331 332 0.826715 TTGCTCTCGCTGGCTATTCT 59.173 50.000 0.00 0.00 36.97 2.40
332 333 1.692411 TGCTCTCGCTGGCTATTCTA 58.308 50.000 0.00 0.00 36.97 2.10
333 334 1.338337 TGCTCTCGCTGGCTATTCTAC 59.662 52.381 0.00 0.00 36.97 2.59
334 335 1.664588 GCTCTCGCTGGCTATTCTACG 60.665 57.143 0.00 0.00 0.00 3.51
335 336 1.604755 CTCTCGCTGGCTATTCTACGT 59.395 52.381 0.00 0.00 0.00 3.57
336 337 1.333931 TCTCGCTGGCTATTCTACGTG 59.666 52.381 0.00 0.00 0.00 4.49
337 338 0.248907 TCGCTGGCTATTCTACGTGC 60.249 55.000 0.00 0.00 0.00 5.34
338 339 1.540607 CGCTGGCTATTCTACGTGCG 61.541 60.000 0.00 0.00 36.41 5.34
339 340 0.527817 GCTGGCTATTCTACGTGCGT 60.528 55.000 0.00 2.05 0.00 5.24
340 341 1.200483 CTGGCTATTCTACGTGCGTG 58.800 55.000 7.55 0.00 0.00 5.34
341 342 0.812549 TGGCTATTCTACGTGCGTGA 59.187 50.000 7.55 0.66 0.00 4.35
342 343 1.407618 TGGCTATTCTACGTGCGTGAT 59.592 47.619 7.55 2.11 0.00 3.06
343 344 2.619646 TGGCTATTCTACGTGCGTGATA 59.380 45.455 7.55 3.09 0.00 2.15
344 345 3.067040 TGGCTATTCTACGTGCGTGATAA 59.933 43.478 7.55 0.00 0.00 1.75
345 346 3.424529 GGCTATTCTACGTGCGTGATAAC 59.575 47.826 7.55 0.05 0.00 1.89
346 347 3.117507 GCTATTCTACGTGCGTGATAACG 59.882 47.826 7.55 0.00 45.15 3.18
352 353 1.576152 CGTGCGTGATAACGTGTTTG 58.424 50.000 4.14 0.00 35.13 2.93
353 354 1.190543 CGTGCGTGATAACGTGTTTGA 59.809 47.619 4.14 0.00 35.13 2.69
354 355 2.717595 CGTGCGTGATAACGTGTTTGAG 60.718 50.000 4.14 0.00 35.13 3.02
355 356 2.473609 GTGCGTGATAACGTGTTTGAGA 59.526 45.455 4.14 0.00 35.26 3.27
356 357 3.122948 GTGCGTGATAACGTGTTTGAGAT 59.877 43.478 4.14 0.00 35.26 2.75
357 358 3.366724 TGCGTGATAACGTGTTTGAGATC 59.633 43.478 4.14 0.00 35.26 2.75
358 359 3.539592 GCGTGATAACGTGTTTGAGATCG 60.540 47.826 4.14 0.00 35.26 3.69
359 360 3.849708 CGTGATAACGTGTTTGAGATCGA 59.150 43.478 0.00 0.00 0.00 3.59
360 361 4.322539 CGTGATAACGTGTTTGAGATCGAA 59.677 41.667 0.00 0.00 0.00 3.71
361 362 5.164129 CGTGATAACGTGTTTGAGATCGAAA 60.164 40.000 0.00 0.00 0.00 3.46
362 363 6.234213 GTGATAACGTGTTTGAGATCGAAAG 58.766 40.000 0.00 0.00 0.00 2.62
363 364 5.924254 TGATAACGTGTTTGAGATCGAAAGT 59.076 36.000 0.00 0.00 0.00 2.66
364 365 4.452890 AACGTGTTTGAGATCGAAAGTG 57.547 40.909 0.00 0.00 0.00 3.16
365 366 3.713288 ACGTGTTTGAGATCGAAAGTGA 58.287 40.909 0.00 0.00 0.00 3.41
366 367 4.116961 ACGTGTTTGAGATCGAAAGTGAA 58.883 39.130 0.00 0.00 0.00 3.18
367 368 4.569162 ACGTGTTTGAGATCGAAAGTGAAA 59.431 37.500 0.00 0.00 0.00 2.69
368 369 5.236478 ACGTGTTTGAGATCGAAAGTGAAAT 59.764 36.000 0.00 0.00 0.00 2.17
369 370 5.785599 CGTGTTTGAGATCGAAAGTGAAATC 59.214 40.000 0.00 0.00 0.00 2.17
370 371 6.346919 CGTGTTTGAGATCGAAAGTGAAATCT 60.347 38.462 0.00 0.00 0.00 2.40
371 372 7.012358 GTGTTTGAGATCGAAAGTGAAATCTC 58.988 38.462 0.00 4.63 42.83 2.75
372 373 6.931281 TGTTTGAGATCGAAAGTGAAATCTCT 59.069 34.615 11.30 0.00 42.91 3.10
373 374 6.957984 TTGAGATCGAAAGTGAAATCTCTG 57.042 37.500 11.30 0.00 42.91 3.35
374 375 6.030548 TGAGATCGAAAGTGAAATCTCTGT 57.969 37.500 11.30 0.00 42.91 3.41
375 376 6.096036 TGAGATCGAAAGTGAAATCTCTGTC 58.904 40.000 11.30 0.00 42.91 3.51
376 377 6.071672 TGAGATCGAAAGTGAAATCTCTGTCT 60.072 38.462 11.30 0.00 42.91 3.41
377 378 6.696411 AGATCGAAAGTGAAATCTCTGTCTT 58.304 36.000 0.00 0.00 0.00 3.01
378 379 6.589523 AGATCGAAAGTGAAATCTCTGTCTTG 59.410 38.462 0.00 0.00 0.00 3.02
379 380 5.842907 TCGAAAGTGAAATCTCTGTCTTGA 58.157 37.500 2.27 0.00 0.00 3.02
380 381 6.459066 TCGAAAGTGAAATCTCTGTCTTGAT 58.541 36.000 2.27 0.00 0.00 2.57
381 382 6.931281 TCGAAAGTGAAATCTCTGTCTTGATT 59.069 34.615 2.27 0.00 34.75 2.57
382 383 7.014115 CGAAAGTGAAATCTCTGTCTTGATTG 58.986 38.462 2.27 0.00 33.72 2.67
383 384 7.095481 CGAAAGTGAAATCTCTGTCTTGATTGA 60.095 37.037 2.27 0.00 33.72 2.57
384 385 8.632906 AAAGTGAAATCTCTGTCTTGATTGAT 57.367 30.769 0.00 0.00 33.72 2.57
385 386 7.612668 AGTGAAATCTCTGTCTTGATTGATG 57.387 36.000 0.00 0.00 33.72 3.07
386 387 6.598457 AGTGAAATCTCTGTCTTGATTGATGG 59.402 38.462 0.00 0.00 33.72 3.51
387 388 6.373774 GTGAAATCTCTGTCTTGATTGATGGT 59.626 38.462 0.00 0.00 33.72 3.55
388 389 6.944290 TGAAATCTCTGTCTTGATTGATGGTT 59.056 34.615 0.00 0.00 33.72 3.67
389 390 8.102676 TGAAATCTCTGTCTTGATTGATGGTTA 58.897 33.333 0.00 0.00 33.72 2.85
390 391 7.856145 AATCTCTGTCTTGATTGATGGTTAC 57.144 36.000 0.00 0.00 32.40 2.50
391 392 6.358974 TCTCTGTCTTGATTGATGGTTACA 57.641 37.500 0.00 0.00 0.00 2.41
392 393 6.401394 TCTCTGTCTTGATTGATGGTTACAG 58.599 40.000 0.00 0.00 35.54 2.74
393 394 5.491070 TCTGTCTTGATTGATGGTTACAGG 58.509 41.667 0.00 0.00 35.08 4.00
394 395 4.009675 TGTCTTGATTGATGGTTACAGGC 58.990 43.478 0.00 0.00 0.00 4.85
395 396 3.063997 GTCTTGATTGATGGTTACAGGCG 59.936 47.826 0.00 0.00 0.00 5.52
396 397 1.378531 TGATTGATGGTTACAGGCGC 58.621 50.000 0.00 0.00 0.00 6.53
397 398 1.065491 TGATTGATGGTTACAGGCGCT 60.065 47.619 7.64 0.00 0.00 5.92
398 399 2.169561 TGATTGATGGTTACAGGCGCTA 59.830 45.455 7.64 0.00 0.00 4.26
399 400 2.018542 TTGATGGTTACAGGCGCTAC 57.981 50.000 7.64 0.00 0.00 3.58
400 401 1.191535 TGATGGTTACAGGCGCTACT 58.808 50.000 7.64 0.00 0.00 2.57
401 402 1.553248 TGATGGTTACAGGCGCTACTT 59.447 47.619 7.64 0.00 0.00 2.24
402 403 2.761767 TGATGGTTACAGGCGCTACTTA 59.238 45.455 7.64 0.00 0.00 2.24
403 404 3.386726 TGATGGTTACAGGCGCTACTTAT 59.613 43.478 7.64 0.00 0.00 1.73
404 405 4.585581 TGATGGTTACAGGCGCTACTTATA 59.414 41.667 7.64 0.00 0.00 0.98
405 406 4.311816 TGGTTACAGGCGCTACTTATAC 57.688 45.455 7.64 0.00 0.00 1.47
406 407 3.068590 TGGTTACAGGCGCTACTTATACC 59.931 47.826 7.64 7.48 0.00 2.73
407 408 3.068590 GGTTACAGGCGCTACTTATACCA 59.931 47.826 7.64 0.00 0.00 3.25
408 409 4.262335 GGTTACAGGCGCTACTTATACCAT 60.262 45.833 7.64 0.00 0.00 3.55
409 410 3.662247 ACAGGCGCTACTTATACCATC 57.338 47.619 7.64 0.00 0.00 3.51
410 411 3.231818 ACAGGCGCTACTTATACCATCT 58.768 45.455 7.64 0.00 0.00 2.90
411 412 3.005897 ACAGGCGCTACTTATACCATCTG 59.994 47.826 7.64 3.46 0.00 2.90
412 413 2.563179 AGGCGCTACTTATACCATCTGG 59.437 50.000 7.64 0.00 42.17 3.86
413 414 2.561419 GGCGCTACTTATACCATCTGGA 59.439 50.000 7.64 0.00 38.94 3.86
414 415 3.367498 GGCGCTACTTATACCATCTGGAG 60.367 52.174 7.64 0.00 38.94 3.86
415 416 3.506455 GCGCTACTTATACCATCTGGAGA 59.494 47.826 0.00 0.00 38.94 3.71
416 417 4.380023 GCGCTACTTATACCATCTGGAGAG 60.380 50.000 0.00 0.00 38.94 3.20
417 418 5.004448 CGCTACTTATACCATCTGGAGAGA 58.996 45.833 2.55 0.00 38.94 3.10
418 419 5.106475 CGCTACTTATACCATCTGGAGAGAC 60.106 48.000 2.55 0.00 38.94 3.36
419 420 5.106475 GCTACTTATACCATCTGGAGAGACG 60.106 48.000 2.55 0.00 38.94 4.18
420 421 3.570550 ACTTATACCATCTGGAGAGACGC 59.429 47.826 2.55 0.00 38.94 5.19
421 422 0.955178 ATACCATCTGGAGAGACGCG 59.045 55.000 3.53 3.53 38.94 6.01
422 423 0.107361 TACCATCTGGAGAGACGCGA 60.107 55.000 15.93 0.00 38.94 5.87
423 424 0.753479 ACCATCTGGAGAGACGCGAT 60.753 55.000 15.93 0.00 38.94 4.58
424 425 0.039617 CCATCTGGAGAGACGCGATC 60.040 60.000 15.93 10.89 37.39 3.69
425 426 0.385348 CATCTGGAGAGACGCGATCG 60.385 60.000 15.93 11.69 42.43 3.69
426 427 0.533085 ATCTGGAGAGACGCGATCGA 60.533 55.000 21.57 3.56 39.41 3.59
427 428 0.743345 TCTGGAGAGACGCGATCGAA 60.743 55.000 21.57 0.98 39.41 3.71
428 429 0.316607 CTGGAGAGACGCGATCGAAG 60.317 60.000 21.57 14.33 39.41 3.79
429 430 1.009449 GGAGAGACGCGATCGAAGG 60.009 63.158 21.57 9.53 39.41 3.46
430 431 1.009449 GAGAGACGCGATCGAAGGG 60.009 63.158 21.57 6.83 39.41 3.95
431 432 1.437772 GAGAGACGCGATCGAAGGGA 61.438 60.000 21.57 0.00 39.41 4.20
432 433 1.009449 GAGACGCGATCGAAGGGAG 60.009 63.158 21.57 4.53 39.41 4.30
433 434 2.026301 GACGCGATCGAAGGGAGG 59.974 66.667 21.57 0.48 39.41 4.30
434 435 4.208686 ACGCGATCGAAGGGAGGC 62.209 66.667 21.57 0.00 39.41 4.70
436 437 4.208686 GCGATCGAAGGGAGGCGT 62.209 66.667 21.57 0.00 0.00 5.68
437 438 2.026301 CGATCGAAGGGAGGCGTC 59.974 66.667 10.26 0.00 0.00 5.19
438 439 2.026301 GATCGAAGGGAGGCGTCG 59.974 66.667 0.00 0.00 36.12 5.12
439 440 3.486252 GATCGAAGGGAGGCGTCGG 62.486 68.421 0.00 0.00 35.51 4.79
441 442 4.065281 CGAAGGGAGGCGTCGGTT 62.065 66.667 0.00 0.00 0.00 4.44
442 443 2.125633 GAAGGGAGGCGTCGGTTC 60.126 66.667 0.00 2.31 0.00 3.62
443 444 3.660732 GAAGGGAGGCGTCGGTTCC 62.661 68.421 0.00 0.00 0.00 3.62
445 446 4.452733 GGGAGGCGTCGGTTCCAG 62.453 72.222 0.00 0.00 32.50 3.86
446 447 4.452733 GGAGGCGTCGGTTCCAGG 62.453 72.222 0.00 0.00 0.00 4.45
447 448 4.452733 GAGGCGTCGGTTCCAGGG 62.453 72.222 0.00 0.00 0.00 4.45
452 453 4.410400 GTCGGTTCCAGGGGGCAG 62.410 72.222 0.00 0.00 0.00 4.85
455 456 3.732849 GGTTCCAGGGGGCAGGAG 61.733 72.222 0.00 0.00 34.91 3.69
456 457 2.936032 GTTCCAGGGGGCAGGAGT 60.936 66.667 0.00 0.00 34.91 3.85
457 458 2.935481 TTCCAGGGGGCAGGAGTG 60.935 66.667 0.00 0.00 34.91 3.51
458 459 3.498961 TTCCAGGGGGCAGGAGTGA 62.499 63.158 0.00 0.00 34.91 3.41
459 460 3.406200 CCAGGGGGCAGGAGTGAG 61.406 72.222 0.00 0.00 0.00 3.51
460 461 2.284921 CAGGGGGCAGGAGTGAGA 60.285 66.667 0.00 0.00 0.00 3.27
461 462 1.920325 CAGGGGGCAGGAGTGAGAA 60.920 63.158 0.00 0.00 0.00 2.87
462 463 1.614824 AGGGGGCAGGAGTGAGAAG 60.615 63.158 0.00 0.00 0.00 2.85
463 464 2.270527 GGGGCAGGAGTGAGAAGC 59.729 66.667 0.00 0.00 0.00 3.86
464 465 2.270527 GGGCAGGAGTGAGAAGCC 59.729 66.667 0.00 0.00 44.48 4.35
465 466 2.125350 GGCAGGAGTGAGAAGCCG 60.125 66.667 0.00 0.00 35.42 5.52
466 467 2.659610 GCAGGAGTGAGAAGCCGT 59.340 61.111 0.00 0.00 0.00 5.68
467 468 1.446966 GCAGGAGTGAGAAGCCGTC 60.447 63.158 0.00 0.00 0.00 4.79
468 469 1.882989 GCAGGAGTGAGAAGCCGTCT 61.883 60.000 0.00 0.00 40.25 4.18
469 470 0.108898 CAGGAGTGAGAAGCCGTCTG 60.109 60.000 0.00 0.00 36.41 3.51
470 471 0.540830 AGGAGTGAGAAGCCGTCTGT 60.541 55.000 0.00 0.00 36.41 3.41
471 472 1.174783 GGAGTGAGAAGCCGTCTGTA 58.825 55.000 0.00 0.00 36.41 2.74
472 473 1.135344 GGAGTGAGAAGCCGTCTGTAC 60.135 57.143 0.00 0.00 36.41 2.90
482 483 2.818350 CGTCTGTACGGGACAAACC 58.182 57.895 15.69 0.00 45.50 3.27
490 491 3.708734 GGGACAAACCGCACGACG 61.709 66.667 0.00 0.00 40.11 5.12
500 501 3.587933 GCACGACGGTTTGGGCAA 61.588 61.111 0.00 0.00 35.28 4.52
501 502 2.637025 CACGACGGTTTGGGCAAG 59.363 61.111 0.00 0.00 0.00 4.01
502 503 2.593436 ACGACGGTTTGGGCAAGG 60.593 61.111 0.00 0.00 0.00 3.61
503 504 3.361977 CGACGGTTTGGGCAAGGG 61.362 66.667 0.00 0.00 0.00 3.95
504 505 2.114411 GACGGTTTGGGCAAGGGA 59.886 61.111 0.00 0.00 0.00 4.20
505 506 1.529713 GACGGTTTGGGCAAGGGAA 60.530 57.895 0.00 0.00 0.00 3.97
506 507 1.524008 GACGGTTTGGGCAAGGGAAG 61.524 60.000 0.00 0.00 0.00 3.46
507 508 1.228429 CGGTTTGGGCAAGGGAAGA 60.228 57.895 0.00 0.00 0.00 2.87
508 509 0.611896 CGGTTTGGGCAAGGGAAGAT 60.612 55.000 0.00 0.00 0.00 2.40
509 510 1.644509 GGTTTGGGCAAGGGAAGATT 58.355 50.000 0.00 0.00 0.00 2.40
510 511 1.977854 GGTTTGGGCAAGGGAAGATTT 59.022 47.619 0.00 0.00 0.00 2.17
511 512 2.371841 GGTTTGGGCAAGGGAAGATTTT 59.628 45.455 0.00 0.00 0.00 1.82
512 513 3.557054 GGTTTGGGCAAGGGAAGATTTTC 60.557 47.826 0.00 0.00 0.00 2.29
528 529 9.599866 GGAAGATTTTCCCCTAATTACAAATTG 57.400 33.333 3.55 0.00 46.03 2.32
560 562 8.854614 ATTCTAACAAGCATAAAGTTCTCTGT 57.145 30.769 0.00 0.00 0.00 3.41
588 591 2.331893 CGCGCCCTCCAAACATCAA 61.332 57.895 0.00 0.00 0.00 2.57
612 617 2.102757 ACTGCACATTCAATGCCAAACA 59.897 40.909 0.00 0.00 42.69 2.83
614 619 2.871022 TGCACATTCAATGCCAAACAAC 59.129 40.909 0.00 0.00 42.69 3.32
615 620 2.096811 GCACATTCAATGCCAAACAACG 60.097 45.455 0.00 0.00 37.08 4.10
619 624 5.060816 CACATTCAATGCCAAACAACGATAC 59.939 40.000 0.00 0.00 0.00 2.24
620 625 5.048083 ACATTCAATGCCAAACAACGATACT 60.048 36.000 0.00 0.00 0.00 2.12
621 626 4.418013 TCAATGCCAAACAACGATACTG 57.582 40.909 0.00 0.00 0.00 2.74
622 627 3.818210 TCAATGCCAAACAACGATACTGT 59.182 39.130 0.00 0.00 0.00 3.55
663 668 6.913132 CGTTACATCTCTATCAGTTGATTCGT 59.087 38.462 0.00 0.00 36.05 3.85
665 670 9.088512 GTTACATCTCTATCAGTTGATTCGTTT 57.911 33.333 0.00 0.00 36.05 3.60
773 779 5.221382 GGGAAATTAGCGTGGTAGATAGACA 60.221 44.000 0.00 0.00 0.00 3.41
811 817 5.782047 TCACACCATTTCACAATCCAATTC 58.218 37.500 0.00 0.00 0.00 2.17
840 846 5.346522 AGGAAGTACCGAAAATTAGCTACG 58.653 41.667 0.00 0.00 44.74 3.51
881 887 1.944234 ATTTTTAAGGCGCCGGCTGG 61.944 55.000 26.68 11.41 38.81 4.85
929 935 4.712425 GCACCACTCGTACGCCGT 62.712 66.667 11.24 7.32 37.94 5.68
1636 1667 2.408333 GGATGCATTTCCGGGTCAG 58.592 57.895 0.00 0.00 0.00 3.51
1687 1718 3.195698 GATGCCTTCGCCGTGACC 61.196 66.667 0.00 0.00 0.00 4.02
1796 1828 2.899838 GGTTGCCGTCACTGTGCA 60.900 61.111 2.12 0.00 0.00 4.57
1904 1946 2.291346 TGATAGCTATACTAGGCGGGCA 60.291 50.000 6.13 0.00 33.29 5.36
2367 2409 3.454371 ACACACCTTATCCGTATGAGC 57.546 47.619 0.00 0.00 0.00 4.26
2369 2411 3.388024 ACACACCTTATCCGTATGAGCAT 59.612 43.478 0.00 0.00 0.00 3.79
2370 2412 3.990469 CACACCTTATCCGTATGAGCATC 59.010 47.826 0.00 0.00 0.00 3.91
2376 2418 1.239347 TCCGTATGAGCATCTCCGAG 58.761 55.000 0.00 0.00 34.92 4.63
2379 2421 2.147150 CGTATGAGCATCTCCGAGAGA 58.853 52.381 4.07 6.14 43.20 3.10
2381 2423 1.327303 ATGAGCATCTCCGAGAGACC 58.673 55.000 4.07 1.90 41.76 3.85
2384 2426 1.098712 AGCATCTCCGAGAGACCGAC 61.099 60.000 4.07 0.00 41.76 4.79
2385 2427 1.098712 GCATCTCCGAGAGACCGACT 61.099 60.000 4.07 0.00 41.76 4.18
2411 2453 7.541091 TCGGCATATAGATTTTACGAAGTCATC 59.459 37.037 0.00 0.00 43.93 2.92
2443 2506 1.262151 GTAGTCGATGAGAGCGTCTCC 59.738 57.143 11.01 2.14 42.73 3.71
2454 2517 1.079750 GCGTCTCCTCCCACTGAAC 60.080 63.158 0.00 0.00 0.00 3.18
2484 2547 8.947940 CATCGACGGAATTCTTGAAATAAATTC 58.052 33.333 5.23 0.00 38.23 2.17
2547 2611 2.629051 GGATACCACTGTGCACCTAAC 58.371 52.381 15.69 0.00 0.00 2.34
2555 2619 1.812571 CTGTGCACCTAACCATCCAAC 59.187 52.381 15.69 0.00 0.00 3.77
2561 2625 1.354368 ACCTAACCATCCAACCACAGG 59.646 52.381 0.00 0.00 0.00 4.00
2574 2638 0.039256 CCACAGGTTGGTTCGCAATG 60.039 55.000 0.00 0.00 41.10 2.82
2579 2643 0.039527 GGTTGGTTCGCAATGTCCAC 60.040 55.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.386951 TGGACGCACCCACGATGG 62.387 66.667 0.00 0.00 38.00 3.51
7 8 2.815211 CTGGACGCACCCACGATG 60.815 66.667 0.00 0.00 38.00 3.84
8 9 4.082523 CCTGGACGCACCCACGAT 62.083 66.667 0.00 0.00 38.00 3.73
72 73 3.596066 CTGGACGTGGTGCTCCTGG 62.596 68.421 6.34 0.41 34.23 4.45
73 74 2.047844 CTGGACGTGGTGCTCCTG 60.048 66.667 6.34 1.35 34.23 3.86
74 75 4.008933 GCTGGACGTGGTGCTCCT 62.009 66.667 6.34 0.00 34.23 3.69
136 137 1.927210 CAAGCCATCCGTCGATTCG 59.073 57.895 0.00 0.00 0.00 3.34
137 138 1.089481 TGCAAGCCATCCGTCGATTC 61.089 55.000 0.00 0.00 0.00 2.52
138 139 0.464373 ATGCAAGCCATCCGTCGATT 60.464 50.000 0.00 0.00 0.00 3.34
139 140 0.882042 GATGCAAGCCATCCGTCGAT 60.882 55.000 0.00 0.00 43.72 3.59
140 141 1.521457 GATGCAAGCCATCCGTCGA 60.521 57.895 0.00 0.00 43.72 4.20
141 142 3.017323 GATGCAAGCCATCCGTCG 58.983 61.111 0.00 0.00 43.72 5.12
166 167 2.741211 GTGGACTCCGGCGTTTCC 60.741 66.667 6.01 8.93 0.00 3.13
167 168 2.741211 GGTGGACTCCGGCGTTTC 60.741 66.667 6.01 0.00 0.00 2.78
168 169 4.324991 GGGTGGACTCCGGCGTTT 62.325 66.667 6.01 0.00 0.00 3.60
172 173 4.083862 GAGTGGGTGGACTCCGGC 62.084 72.222 0.00 0.00 37.05 6.13
176 177 1.604378 CCATGGAGTGGGTGGACTC 59.396 63.158 5.56 0.00 44.79 3.36
177 178 3.826282 CCATGGAGTGGGTGGACT 58.174 61.111 5.56 0.00 44.79 3.85
185 186 0.525668 GTCGTCGCTACCATGGAGTG 60.526 60.000 21.47 17.28 0.00 3.51
186 187 1.807886 GTCGTCGCTACCATGGAGT 59.192 57.895 21.47 0.00 0.00 3.85
187 188 1.298413 CGTCGTCGCTACCATGGAG 60.298 63.158 21.47 12.61 0.00 3.86
188 189 2.767445 CCGTCGTCGCTACCATGGA 61.767 63.158 21.47 0.67 35.54 3.41
189 190 1.717791 TACCGTCGTCGCTACCATGG 61.718 60.000 11.19 11.19 35.54 3.66
190 191 0.309922 ATACCGTCGTCGCTACCATG 59.690 55.000 0.00 0.00 35.54 3.66
191 192 0.590195 GATACCGTCGTCGCTACCAT 59.410 55.000 0.00 0.00 35.54 3.55
192 193 1.765161 CGATACCGTCGTCGCTACCA 61.765 60.000 0.00 0.00 45.19 3.25
193 194 1.083144 CGATACCGTCGTCGCTACC 60.083 63.158 0.00 0.00 45.19 3.18
194 195 4.486090 CGATACCGTCGTCGCTAC 57.514 61.111 0.00 0.00 45.19 3.58
205 206 1.645997 GAGGACGGTCGTCGATACC 59.354 63.158 14.25 9.31 45.41 2.73
224 225 3.798954 CTTCCTCCGCCTGATCCGC 62.799 68.421 0.00 0.00 0.00 5.54
225 226 1.676678 TTCTTCCTCCGCCTGATCCG 61.677 60.000 0.00 0.00 0.00 4.18
226 227 0.105778 CTTCTTCCTCCGCCTGATCC 59.894 60.000 0.00 0.00 0.00 3.36
227 228 0.105778 CCTTCTTCCTCCGCCTGATC 59.894 60.000 0.00 0.00 0.00 2.92
228 229 0.325671 TCCTTCTTCCTCCGCCTGAT 60.326 55.000 0.00 0.00 0.00 2.90
229 230 0.544357 TTCCTTCTTCCTCCGCCTGA 60.544 55.000 0.00 0.00 0.00 3.86
230 231 0.324943 TTTCCTTCTTCCTCCGCCTG 59.675 55.000 0.00 0.00 0.00 4.85
231 232 0.325272 GTTTCCTTCTTCCTCCGCCT 59.675 55.000 0.00 0.00 0.00 5.52
232 233 1.019805 CGTTTCCTTCTTCCTCCGCC 61.020 60.000 0.00 0.00 0.00 6.13
233 234 0.037605 TCGTTTCCTTCTTCCTCCGC 60.038 55.000 0.00 0.00 0.00 5.54
234 235 1.404315 CCTCGTTTCCTTCTTCCTCCG 60.404 57.143 0.00 0.00 0.00 4.63
235 236 1.624312 ACCTCGTTTCCTTCTTCCTCC 59.376 52.381 0.00 0.00 0.00 4.30
236 237 3.404224 AACCTCGTTTCCTTCTTCCTC 57.596 47.619 0.00 0.00 0.00 3.71
237 238 3.261137 CCTAACCTCGTTTCCTTCTTCCT 59.739 47.826 0.00 0.00 0.00 3.36
238 239 3.597255 CCTAACCTCGTTTCCTTCTTCC 58.403 50.000 0.00 0.00 0.00 3.46
239 240 3.001414 GCCTAACCTCGTTTCCTTCTTC 58.999 50.000 0.00 0.00 0.00 2.87
240 241 2.370849 TGCCTAACCTCGTTTCCTTCTT 59.629 45.455 0.00 0.00 0.00 2.52
241 242 1.975680 TGCCTAACCTCGTTTCCTTCT 59.024 47.619 0.00 0.00 0.00 2.85
242 243 2.467566 TGCCTAACCTCGTTTCCTTC 57.532 50.000 0.00 0.00 0.00 3.46
243 244 2.572104 AGATGCCTAACCTCGTTTCCTT 59.428 45.455 0.00 0.00 0.00 3.36
244 245 2.168728 GAGATGCCTAACCTCGTTTCCT 59.831 50.000 0.00 0.00 0.00 3.36
245 246 2.093658 TGAGATGCCTAACCTCGTTTCC 60.094 50.000 0.00 0.00 0.00 3.13
246 247 2.930682 GTGAGATGCCTAACCTCGTTTC 59.069 50.000 0.00 0.00 0.00 2.78
247 248 2.354805 GGTGAGATGCCTAACCTCGTTT 60.355 50.000 0.00 0.00 40.30 3.60
248 249 1.207329 GGTGAGATGCCTAACCTCGTT 59.793 52.381 0.00 0.00 40.30 3.85
249 250 0.824759 GGTGAGATGCCTAACCTCGT 59.175 55.000 0.00 0.00 40.30 4.18
250 251 0.249073 CGGTGAGATGCCTAACCTCG 60.249 60.000 0.00 0.00 41.15 4.63
251 252 0.105039 CCGGTGAGATGCCTAACCTC 59.895 60.000 0.00 0.00 41.15 3.85
252 253 1.972660 GCCGGTGAGATGCCTAACCT 61.973 60.000 1.90 0.00 41.15 3.50
253 254 1.523938 GCCGGTGAGATGCCTAACC 60.524 63.158 1.90 0.00 40.09 2.85
254 255 1.883084 CGCCGGTGAGATGCCTAAC 60.883 63.158 10.20 0.00 0.00 2.34
255 256 2.499205 CGCCGGTGAGATGCCTAA 59.501 61.111 10.20 0.00 0.00 2.69
256 257 3.536917 CCGCCGGTGAGATGCCTA 61.537 66.667 18.79 0.00 0.00 3.93
271 272 4.200283 GAGAGGGAGCACTCGCCG 62.200 72.222 10.75 0.00 42.72 6.46
272 273 2.291457 GAAGAGAGGGAGCACTCGCC 62.291 65.000 10.75 4.40 42.72 5.54
273 274 1.140804 GAAGAGAGGGAGCACTCGC 59.859 63.158 6.61 6.61 42.31 5.03
274 275 0.738389 GAGAAGAGAGGGAGCACTCG 59.262 60.000 0.00 0.00 42.31 4.18
275 276 1.111277 GGAGAAGAGAGGGAGCACTC 58.889 60.000 0.00 0.00 37.77 3.51
276 277 0.709992 AGGAGAAGAGAGGGAGCACT 59.290 55.000 0.00 0.00 0.00 4.40
277 278 1.567357 AAGGAGAAGAGAGGGAGCAC 58.433 55.000 0.00 0.00 0.00 4.40
278 279 2.183679 GAAAGGAGAAGAGAGGGAGCA 58.816 52.381 0.00 0.00 0.00 4.26
279 280 2.430694 GAGAAAGGAGAAGAGAGGGAGC 59.569 54.545 0.00 0.00 0.00 4.70
280 281 3.701040 CAGAGAAAGGAGAAGAGAGGGAG 59.299 52.174 0.00 0.00 0.00 4.30
281 282 3.335183 TCAGAGAAAGGAGAAGAGAGGGA 59.665 47.826 0.00 0.00 0.00 4.20
282 283 3.707316 TCAGAGAAAGGAGAAGAGAGGG 58.293 50.000 0.00 0.00 0.00 4.30
283 284 4.711355 ACATCAGAGAAAGGAGAAGAGAGG 59.289 45.833 0.00 0.00 0.00 3.69
284 285 5.920193 ACATCAGAGAAAGGAGAAGAGAG 57.080 43.478 0.00 0.00 0.00 3.20
285 286 6.496565 AGAAACATCAGAGAAAGGAGAAGAGA 59.503 38.462 0.00 0.00 0.00 3.10
286 287 6.700352 AGAAACATCAGAGAAAGGAGAAGAG 58.300 40.000 0.00 0.00 0.00 2.85
287 288 6.678568 AGAAACATCAGAGAAAGGAGAAGA 57.321 37.500 0.00 0.00 0.00 2.87
288 289 7.742556 AAAGAAACATCAGAGAAAGGAGAAG 57.257 36.000 0.00 0.00 0.00 2.85
289 290 7.469181 GCAAAAGAAACATCAGAGAAAGGAGAA 60.469 37.037 0.00 0.00 0.00 2.87
290 291 6.016777 GCAAAAGAAACATCAGAGAAAGGAGA 60.017 38.462 0.00 0.00 0.00 3.71
291 292 6.016443 AGCAAAAGAAACATCAGAGAAAGGAG 60.016 38.462 0.00 0.00 0.00 3.69
292 293 5.829924 AGCAAAAGAAACATCAGAGAAAGGA 59.170 36.000 0.00 0.00 0.00 3.36
293 294 6.016443 AGAGCAAAAGAAACATCAGAGAAAGG 60.016 38.462 0.00 0.00 0.00 3.11
294 295 6.968250 AGAGCAAAAGAAACATCAGAGAAAG 58.032 36.000 0.00 0.00 0.00 2.62
295 296 6.293081 CGAGAGCAAAAGAAACATCAGAGAAA 60.293 38.462 0.00 0.00 0.00 2.52
296 297 5.178252 CGAGAGCAAAAGAAACATCAGAGAA 59.822 40.000 0.00 0.00 0.00 2.87
297 298 4.687948 CGAGAGCAAAAGAAACATCAGAGA 59.312 41.667 0.00 0.00 0.00 3.10
298 299 4.955617 CGAGAGCAAAAGAAACATCAGAG 58.044 43.478 0.00 0.00 0.00 3.35
299 300 4.997905 CGAGAGCAAAAGAAACATCAGA 57.002 40.909 0.00 0.00 0.00 3.27
315 316 1.604755 ACGTAGAATAGCCAGCGAGAG 59.395 52.381 0.00 0.00 0.00 3.20
316 317 1.333931 CACGTAGAATAGCCAGCGAGA 59.666 52.381 0.00 0.00 0.00 4.04
317 318 1.759994 CACGTAGAATAGCCAGCGAG 58.240 55.000 0.00 0.00 0.00 5.03
318 319 0.248907 GCACGTAGAATAGCCAGCGA 60.249 55.000 0.00 0.00 0.00 4.93
319 320 1.540607 CGCACGTAGAATAGCCAGCG 61.541 60.000 0.00 0.00 37.91 5.18
320 321 0.527817 ACGCACGTAGAATAGCCAGC 60.528 55.000 0.00 0.00 0.00 4.85
321 322 1.200483 CACGCACGTAGAATAGCCAG 58.800 55.000 0.00 0.00 0.00 4.85
322 323 0.812549 TCACGCACGTAGAATAGCCA 59.187 50.000 0.00 0.00 0.00 4.75
323 324 2.135664 ATCACGCACGTAGAATAGCC 57.864 50.000 0.00 0.00 0.00 3.93
324 325 3.117507 CGTTATCACGCACGTAGAATAGC 59.882 47.826 0.00 0.00 40.18 2.97
325 326 4.846218 CGTTATCACGCACGTAGAATAG 57.154 45.455 0.00 0.00 40.18 1.73
338 339 5.756950 TTCGATCTCAAACACGTTATCAC 57.243 39.130 0.00 0.00 0.00 3.06
339 340 5.924254 ACTTTCGATCTCAAACACGTTATCA 59.076 36.000 0.00 0.00 0.00 2.15
340 341 6.089016 TCACTTTCGATCTCAAACACGTTATC 59.911 38.462 0.00 0.00 0.00 1.75
341 342 5.924254 TCACTTTCGATCTCAAACACGTTAT 59.076 36.000 0.00 0.00 0.00 1.89
342 343 5.283294 TCACTTTCGATCTCAAACACGTTA 58.717 37.500 0.00 0.00 0.00 3.18
343 344 4.116961 TCACTTTCGATCTCAAACACGTT 58.883 39.130 0.00 0.00 0.00 3.99
344 345 3.713288 TCACTTTCGATCTCAAACACGT 58.287 40.909 0.00 0.00 0.00 4.49
345 346 4.708868 TTCACTTTCGATCTCAAACACG 57.291 40.909 0.00 0.00 0.00 4.49
346 347 6.892691 AGATTTCACTTTCGATCTCAAACAC 58.107 36.000 0.00 0.00 0.00 3.32
347 348 6.931281 AGAGATTTCACTTTCGATCTCAAACA 59.069 34.615 12.96 0.00 44.32 2.83
348 349 7.095439 ACAGAGATTTCACTTTCGATCTCAAAC 60.095 37.037 12.96 0.00 44.32 2.93
349 350 6.931281 ACAGAGATTTCACTTTCGATCTCAAA 59.069 34.615 12.96 0.00 44.32 2.69
350 351 6.459066 ACAGAGATTTCACTTTCGATCTCAA 58.541 36.000 12.96 0.00 44.32 3.02
351 352 6.030548 ACAGAGATTTCACTTTCGATCTCA 57.969 37.500 12.96 0.00 44.32 3.27
352 353 6.329496 AGACAGAGATTTCACTTTCGATCTC 58.671 40.000 4.47 4.47 42.96 2.75
353 354 6.279513 AGACAGAGATTTCACTTTCGATCT 57.720 37.500 0.00 0.00 0.00 2.75
354 355 6.587990 TCAAGACAGAGATTTCACTTTCGATC 59.412 38.462 0.00 0.00 0.00 3.69
355 356 6.459066 TCAAGACAGAGATTTCACTTTCGAT 58.541 36.000 0.00 0.00 0.00 3.59
356 357 5.842907 TCAAGACAGAGATTTCACTTTCGA 58.157 37.500 0.00 0.00 0.00 3.71
357 358 6.718454 ATCAAGACAGAGATTTCACTTTCG 57.282 37.500 0.00 0.00 0.00 3.46
358 359 8.092521 TCAATCAAGACAGAGATTTCACTTTC 57.907 34.615 0.00 0.00 32.43 2.62
359 360 8.512956 CATCAATCAAGACAGAGATTTCACTTT 58.487 33.333 0.00 0.00 32.43 2.66
360 361 7.120873 CCATCAATCAAGACAGAGATTTCACTT 59.879 37.037 0.00 0.00 32.43 3.16
361 362 6.598457 CCATCAATCAAGACAGAGATTTCACT 59.402 38.462 0.00 0.00 32.43 3.41
362 363 6.373774 ACCATCAATCAAGACAGAGATTTCAC 59.626 38.462 0.00 0.00 32.43 3.18
363 364 6.479006 ACCATCAATCAAGACAGAGATTTCA 58.521 36.000 0.00 0.00 32.43 2.69
364 365 6.998968 ACCATCAATCAAGACAGAGATTTC 57.001 37.500 0.00 0.00 32.43 2.17
365 366 7.884877 TGTAACCATCAATCAAGACAGAGATTT 59.115 33.333 0.00 0.00 32.43 2.17
366 367 7.397221 TGTAACCATCAATCAAGACAGAGATT 58.603 34.615 0.00 0.00 34.96 2.40
367 368 6.950842 TGTAACCATCAATCAAGACAGAGAT 58.049 36.000 0.00 0.00 0.00 2.75
368 369 6.358974 TGTAACCATCAATCAAGACAGAGA 57.641 37.500 0.00 0.00 0.00 3.10
369 370 5.583854 CCTGTAACCATCAATCAAGACAGAG 59.416 44.000 0.00 0.00 36.07 3.35
370 371 5.491070 CCTGTAACCATCAATCAAGACAGA 58.509 41.667 0.00 0.00 36.07 3.41
371 372 4.095483 GCCTGTAACCATCAATCAAGACAG 59.905 45.833 0.00 0.00 34.25 3.51
372 373 4.009675 GCCTGTAACCATCAATCAAGACA 58.990 43.478 0.00 0.00 0.00 3.41
373 374 3.063997 CGCCTGTAACCATCAATCAAGAC 59.936 47.826 0.00 0.00 0.00 3.01
374 375 3.270027 CGCCTGTAACCATCAATCAAGA 58.730 45.455 0.00 0.00 0.00 3.02
375 376 2.223340 GCGCCTGTAACCATCAATCAAG 60.223 50.000 0.00 0.00 0.00 3.02
376 377 1.742831 GCGCCTGTAACCATCAATCAA 59.257 47.619 0.00 0.00 0.00 2.57
377 378 1.065491 AGCGCCTGTAACCATCAATCA 60.065 47.619 2.29 0.00 0.00 2.57
378 379 1.668419 AGCGCCTGTAACCATCAATC 58.332 50.000 2.29 0.00 0.00 2.67
379 380 2.170607 AGTAGCGCCTGTAACCATCAAT 59.829 45.455 2.29 0.00 0.00 2.57
380 381 1.553248 AGTAGCGCCTGTAACCATCAA 59.447 47.619 2.29 0.00 0.00 2.57
381 382 1.191535 AGTAGCGCCTGTAACCATCA 58.808 50.000 2.29 0.00 0.00 3.07
382 383 2.311124 AAGTAGCGCCTGTAACCATC 57.689 50.000 2.29 0.00 0.00 3.51
383 384 4.262335 GGTATAAGTAGCGCCTGTAACCAT 60.262 45.833 2.29 0.00 0.00 3.55
384 385 3.068590 GGTATAAGTAGCGCCTGTAACCA 59.931 47.826 2.29 0.00 0.00 3.67
385 386 3.068590 TGGTATAAGTAGCGCCTGTAACC 59.931 47.826 2.29 4.30 0.00 2.85
386 387 4.311816 TGGTATAAGTAGCGCCTGTAAC 57.688 45.455 2.29 0.00 0.00 2.50
387 388 4.831155 AGATGGTATAAGTAGCGCCTGTAA 59.169 41.667 2.29 0.00 0.00 2.41
388 389 4.217767 CAGATGGTATAAGTAGCGCCTGTA 59.782 45.833 2.29 0.00 31.53 2.74
389 390 3.005897 CAGATGGTATAAGTAGCGCCTGT 59.994 47.826 2.29 0.00 31.53 4.00
390 391 3.579709 CAGATGGTATAAGTAGCGCCTG 58.420 50.000 2.29 0.00 0.00 4.85
391 392 2.563179 CCAGATGGTATAAGTAGCGCCT 59.437 50.000 2.29 0.00 0.00 5.52
392 393 2.561419 TCCAGATGGTATAAGTAGCGCC 59.439 50.000 2.29 0.00 36.34 6.53
393 394 3.506455 TCTCCAGATGGTATAAGTAGCGC 59.494 47.826 0.00 0.00 36.34 5.92
394 395 5.004448 TCTCTCCAGATGGTATAAGTAGCG 58.996 45.833 0.00 0.00 36.34 4.26
395 396 5.106475 CGTCTCTCCAGATGGTATAAGTAGC 60.106 48.000 0.00 0.00 32.55 3.58
396 397 5.106475 GCGTCTCTCCAGATGGTATAAGTAG 60.106 48.000 0.00 0.00 36.30 2.57
397 398 4.760715 GCGTCTCTCCAGATGGTATAAGTA 59.239 45.833 0.00 0.00 36.30 2.24
398 399 3.570550 GCGTCTCTCCAGATGGTATAAGT 59.429 47.826 0.00 0.00 36.30 2.24
399 400 3.365465 CGCGTCTCTCCAGATGGTATAAG 60.365 52.174 0.00 0.00 36.30 1.73
400 401 2.552743 CGCGTCTCTCCAGATGGTATAA 59.447 50.000 0.00 0.00 36.30 0.98
401 402 2.152016 CGCGTCTCTCCAGATGGTATA 58.848 52.381 0.00 0.00 36.30 1.47
402 403 0.955178 CGCGTCTCTCCAGATGGTAT 59.045 55.000 0.00 0.00 36.30 2.73
403 404 0.107361 TCGCGTCTCTCCAGATGGTA 60.107 55.000 5.77 0.00 36.30 3.25
404 405 0.753479 ATCGCGTCTCTCCAGATGGT 60.753 55.000 5.77 0.00 36.30 3.55
405 406 0.039617 GATCGCGTCTCTCCAGATGG 60.040 60.000 5.77 0.00 36.30 3.51
406 407 0.385348 CGATCGCGTCTCTCCAGATG 60.385 60.000 5.77 0.00 38.56 2.90
407 408 0.533085 TCGATCGCGTCTCTCCAGAT 60.533 55.000 11.09 0.00 38.98 2.90
408 409 0.743345 TTCGATCGCGTCTCTCCAGA 60.743 55.000 11.09 0.00 38.98 3.86
409 410 0.316607 CTTCGATCGCGTCTCTCCAG 60.317 60.000 11.09 0.00 38.98 3.86
410 411 1.715862 CCTTCGATCGCGTCTCTCCA 61.716 60.000 11.09 0.00 38.98 3.86
411 412 1.009449 CCTTCGATCGCGTCTCTCC 60.009 63.158 11.09 0.00 38.98 3.71
412 413 1.009449 CCCTTCGATCGCGTCTCTC 60.009 63.158 11.09 0.00 38.98 3.20
413 414 1.440938 CTCCCTTCGATCGCGTCTCT 61.441 60.000 11.09 0.00 38.98 3.10
414 415 1.009449 CTCCCTTCGATCGCGTCTC 60.009 63.158 11.09 3.49 38.98 3.36
415 416 2.482333 CCTCCCTTCGATCGCGTCT 61.482 63.158 11.09 0.00 38.98 4.18
416 417 2.026301 CCTCCCTTCGATCGCGTC 59.974 66.667 11.09 1.94 38.98 5.19
417 418 4.208686 GCCTCCCTTCGATCGCGT 62.209 66.667 11.09 0.00 38.98 6.01
419 420 4.208686 ACGCCTCCCTTCGATCGC 62.209 66.667 11.09 0.00 0.00 4.58
420 421 2.026301 GACGCCTCCCTTCGATCG 59.974 66.667 9.36 9.36 0.00 3.69
421 422 2.026301 CGACGCCTCCCTTCGATC 59.974 66.667 0.00 0.00 37.39 3.69
422 423 3.528370 CCGACGCCTCCCTTCGAT 61.528 66.667 0.00 0.00 37.39 3.59
424 425 3.984200 GAACCGACGCCTCCCTTCG 62.984 68.421 0.00 0.00 35.24 3.79
425 426 2.125633 GAACCGACGCCTCCCTTC 60.126 66.667 0.00 0.00 0.00 3.46
426 427 3.703127 GGAACCGACGCCTCCCTT 61.703 66.667 2.78 0.00 0.00 3.95
428 429 4.452733 CTGGAACCGACGCCTCCC 62.453 72.222 10.04 0.23 0.00 4.30
429 430 4.452733 CCTGGAACCGACGCCTCC 62.453 72.222 6.52 6.52 0.00 4.30
430 431 4.452733 CCCTGGAACCGACGCCTC 62.453 72.222 0.00 0.00 0.00 4.70
435 436 4.410400 CTGCCCCCTGGAACCGAC 62.410 72.222 0.00 0.00 0.00 4.79
438 439 3.732849 CTCCTGCCCCCTGGAACC 61.733 72.222 0.00 0.00 38.44 3.62
439 440 2.936032 ACTCCTGCCCCCTGGAAC 60.936 66.667 0.00 0.00 38.44 3.62
440 441 2.935481 CACTCCTGCCCCCTGGAA 60.935 66.667 0.00 0.00 38.44 3.53
441 442 3.931631 CTCACTCCTGCCCCCTGGA 62.932 68.421 0.00 0.00 37.50 3.86
442 443 3.406200 CTCACTCCTGCCCCCTGG 61.406 72.222 0.00 0.00 0.00 4.45
443 444 1.908340 CTTCTCACTCCTGCCCCCTG 61.908 65.000 0.00 0.00 0.00 4.45
444 445 1.614824 CTTCTCACTCCTGCCCCCT 60.615 63.158 0.00 0.00 0.00 4.79
445 446 2.993853 CTTCTCACTCCTGCCCCC 59.006 66.667 0.00 0.00 0.00 5.40
446 447 2.270527 GCTTCTCACTCCTGCCCC 59.729 66.667 0.00 0.00 0.00 5.80
447 448 2.270527 GGCTTCTCACTCCTGCCC 59.729 66.667 0.00 0.00 37.81 5.36
448 449 2.125350 CGGCTTCTCACTCCTGCC 60.125 66.667 0.00 0.00 40.14 4.85
449 450 1.446966 GACGGCTTCTCACTCCTGC 60.447 63.158 0.00 0.00 0.00 4.85
450 451 0.108898 CAGACGGCTTCTCACTCCTG 60.109 60.000 0.00 0.00 28.96 3.86
451 452 0.540830 ACAGACGGCTTCTCACTCCT 60.541 55.000 0.00 0.00 28.96 3.69
452 453 1.135344 GTACAGACGGCTTCTCACTCC 60.135 57.143 0.00 0.00 28.96 3.85
453 454 1.466024 CGTACAGACGGCTTCTCACTC 60.466 57.143 0.00 0.00 45.63 3.51
454 455 0.522180 CGTACAGACGGCTTCTCACT 59.478 55.000 0.00 0.00 45.63 3.41
455 456 3.017232 CGTACAGACGGCTTCTCAC 57.983 57.895 0.00 0.00 45.63 3.51
465 466 2.818350 CGGTTTGTCCCGTACAGAC 58.182 57.895 6.16 6.16 43.07 3.51
473 474 3.708734 CGTCGTGCGGTTTGTCCC 61.709 66.667 0.00 0.00 36.85 4.46
483 484 3.536498 CTTGCCCAAACCGTCGTGC 62.536 63.158 0.00 0.00 0.00 5.34
484 485 2.637025 CTTGCCCAAACCGTCGTG 59.363 61.111 0.00 0.00 0.00 4.35
485 486 2.593436 CCTTGCCCAAACCGTCGT 60.593 61.111 0.00 0.00 0.00 4.34
486 487 3.361977 CCCTTGCCCAAACCGTCG 61.362 66.667 0.00 0.00 0.00 5.12
487 488 1.524008 CTTCCCTTGCCCAAACCGTC 61.524 60.000 0.00 0.00 0.00 4.79
488 489 1.530655 CTTCCCTTGCCCAAACCGT 60.531 57.895 0.00 0.00 0.00 4.83
489 490 0.611896 ATCTTCCCTTGCCCAAACCG 60.612 55.000 0.00 0.00 0.00 4.44
490 491 1.644509 AATCTTCCCTTGCCCAAACC 58.355 50.000 0.00 0.00 0.00 3.27
491 492 3.557054 GGAAAATCTTCCCTTGCCCAAAC 60.557 47.826 0.00 0.00 44.91 2.93
492 493 2.637382 GGAAAATCTTCCCTTGCCCAAA 59.363 45.455 0.00 0.00 44.91 3.28
493 494 2.256306 GGAAAATCTTCCCTTGCCCAA 58.744 47.619 0.00 0.00 44.91 4.12
494 495 1.937191 GGAAAATCTTCCCTTGCCCA 58.063 50.000 0.00 0.00 44.91 5.36
534 535 9.289782 ACAGAGAACTTTATGCTTGTTAGAATT 57.710 29.630 0.00 0.00 0.00 2.17
535 536 8.725148 CACAGAGAACTTTATGCTTGTTAGAAT 58.275 33.333 0.00 0.00 0.00 2.40
536 537 7.931407 TCACAGAGAACTTTATGCTTGTTAGAA 59.069 33.333 0.00 0.00 0.00 2.10
537 538 7.385205 GTCACAGAGAACTTTATGCTTGTTAGA 59.615 37.037 0.00 0.00 0.00 2.10
538 539 7.360438 GGTCACAGAGAACTTTATGCTTGTTAG 60.360 40.741 0.00 0.00 0.00 2.34
539 540 6.426937 GGTCACAGAGAACTTTATGCTTGTTA 59.573 38.462 0.00 0.00 0.00 2.41
540 541 5.239525 GGTCACAGAGAACTTTATGCTTGTT 59.760 40.000 0.00 0.00 0.00 2.83
541 542 4.757149 GGTCACAGAGAACTTTATGCTTGT 59.243 41.667 0.00 0.00 0.00 3.16
542 543 4.154918 GGGTCACAGAGAACTTTATGCTTG 59.845 45.833 0.00 0.00 33.21 4.01
543 544 4.327680 GGGTCACAGAGAACTTTATGCTT 58.672 43.478 0.00 0.00 33.21 3.91
588 591 0.604578 GGCATTGAATGTGCAGTGGT 59.395 50.000 7.05 0.00 44.25 4.16
612 617 4.202121 ACAGTGTTGACAGACAGTATCGTT 60.202 41.667 0.00 0.00 32.13 3.85
614 619 3.902150 ACAGTGTTGACAGACAGTATCG 58.098 45.455 0.00 0.00 32.13 2.92
615 620 5.107837 CGAAACAGTGTTGACAGACAGTATC 60.108 44.000 9.79 0.00 32.13 2.24
619 624 2.930040 ACGAAACAGTGTTGACAGACAG 59.070 45.455 9.79 0.00 0.00 3.51
620 625 2.967362 ACGAAACAGTGTTGACAGACA 58.033 42.857 9.79 0.00 0.00 3.41
621 626 4.327898 TGTAACGAAACAGTGTTGACAGAC 59.672 41.667 9.79 6.48 0.00 3.51
622 627 4.496360 TGTAACGAAACAGTGTTGACAGA 58.504 39.130 9.79 0.00 0.00 3.41
665 670 8.626526 TCGAGCAACTGTACTATAATAATGACA 58.373 33.333 0.00 0.00 0.00 3.58
773 779 6.855763 ATGGTGTGATCAAATGGTTGTATT 57.144 33.333 0.00 0.00 36.07 1.89
811 817 2.460757 TTTCGGTACTTCCTTTCGGG 57.539 50.000 0.00 0.00 0.00 5.14
840 846 8.916628 AAATAGAGGAAAGCTATCTTTGATCC 57.083 34.615 0.00 0.00 42.24 3.36
929 935 0.463620 GAAAAGGTTGTTGCCTGGCA 59.536 50.000 19.30 19.30 39.17 4.92
1419 1425 3.207547 CTCCAGCCACGTGTCGACA 62.208 63.158 15.76 15.76 0.00 4.35
1636 1667 2.178235 TGCGAGCTCTCATGCATGC 61.178 57.895 22.25 11.82 36.40 4.06
1876 1912 5.061064 CGCCTAGTATAGCTATCAAAAAGCG 59.939 44.000 10.16 14.63 44.87 4.68
1904 1946 4.178540 CACTTTACATACGGACGGTGAAT 58.821 43.478 6.41 0.00 0.00 2.57
2342 2384 7.612633 TGCTCATACGGATAAGGTGTGTATATA 59.387 37.037 0.00 0.00 0.00 0.86
2346 2388 3.955551 TGCTCATACGGATAAGGTGTGTA 59.044 43.478 0.00 0.00 0.00 2.90
2347 2389 2.764010 TGCTCATACGGATAAGGTGTGT 59.236 45.455 0.00 0.00 0.00 3.72
2358 2400 1.198867 CTCTCGGAGATGCTCATACGG 59.801 57.143 8.39 0.00 33.89 4.02
2360 2402 2.227865 GGTCTCTCGGAGATGCTCATAC 59.772 54.545 8.39 0.00 40.98 2.39
2367 2409 0.941542 GAGTCGGTCTCTCGGAGATG 59.058 60.000 8.39 3.38 40.98 2.90
2369 2411 4.937193 GAGTCGGTCTCTCGGAGA 57.063 61.111 7.60 7.60 39.86 3.71
2381 2423 5.388111 TCGTAAAATCTATATGCCGAGTCG 58.612 41.667 5.29 5.29 0.00 4.18
2384 2426 6.861572 TGACTTCGTAAAATCTATATGCCGAG 59.138 38.462 0.00 0.00 0.00 4.63
2385 2427 6.741109 TGACTTCGTAAAATCTATATGCCGA 58.259 36.000 0.00 0.00 0.00 5.54
2443 2506 1.354337 CGATGCGTGTTCAGTGGGAG 61.354 60.000 0.00 0.00 0.00 4.30
2454 2517 0.999406 AAGAATTCCGTCGATGCGTG 59.001 50.000 0.65 0.00 0.00 5.34
2484 2547 4.576463 GTCCTGGTGCTTGTATTTATCCTG 59.424 45.833 0.00 0.00 0.00 3.86
2526 2589 1.200519 TAGGTGCACAGTGGTATCCC 58.799 55.000 20.43 0.00 0.00 3.85
2528 2591 2.027561 TGGTTAGGTGCACAGTGGTATC 60.028 50.000 20.43 0.00 0.00 2.24
2539 2603 1.173913 GTGGTTGGATGGTTAGGTGC 58.826 55.000 0.00 0.00 0.00 5.01
2561 2625 0.385473 CGTGGACATTGCGAACCAAC 60.385 55.000 0.00 0.00 35.99 3.77
2565 2629 0.385473 CCAACGTGGACATTGCGAAC 60.385 55.000 0.00 0.00 40.96 3.95
2570 2634 4.512198 TGTTACTAACCAACGTGGACATTG 59.488 41.667 10.46 0.00 40.96 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.