Multiple sequence alignment - TraesCS2D01G501400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G501400 chr2D 100.000 3378 0 0 1 3378 595544004 595547381 0.000000e+00 6239.0
1 TraesCS2D01G501400 chr2D 100.000 367 0 0 3639 4005 595547642 595548008 0.000000e+00 678.0
2 TraesCS2D01G501400 chr2D 84.138 145 19 4 3683 3824 595547238 595547381 1.940000e-28 137.0
3 TraesCS2D01G501400 chr2D 84.138 145 19 4 3235 3378 595547686 595547827 1.940000e-28 137.0
4 TraesCS2D01G501400 chr2A 97.043 2300 52 7 779 3069 729575864 729578156 0.000000e+00 3856.0
5 TraesCS2D01G501400 chr2A 92.683 369 14 3 3639 4005 729578373 729578730 1.650000e-143 520.0
6 TraesCS2D01G501400 chr2A 92.857 322 17 4 3063 3378 729578014 729578335 2.820000e-126 462.0
7 TraesCS2D01G501400 chr2A 83.598 189 25 6 3683 3866 729578192 729578379 5.320000e-39 172.0
8 TraesCS2D01G501400 chr2A 84.733 131 16 4 3249 3378 729578431 729578558 1.170000e-25 128.0
9 TraesCS2D01G501400 chr2A 92.063 63 5 0 705 767 729575808 729575870 5.510000e-14 89.8
10 TraesCS2D01G501400 chr2B 96.915 2042 62 1 1159 3199 723441829 723443870 0.000000e+00 3421.0
11 TraesCS2D01G501400 chr2B 96.522 460 12 3 705 1162 723441041 723441498 0.000000e+00 758.0
12 TraesCS2D01G501400 chr2B 87.302 630 60 13 13 629 677873628 677873006 0.000000e+00 702.0
13 TraesCS2D01G501400 chr2B 94.000 450 18 4 2930 3378 723443733 723444174 0.000000e+00 673.0
14 TraesCS2D01G501400 chr2B 97.820 367 4 2 3639 4005 723444277 723444639 7.300000e-177 630.0
15 TraesCS2D01G501400 chr2B 96.429 140 2 3 3063 3199 723443600 723443739 1.120000e-55 228.0
16 TraesCS2D01G501400 chr2B 98.000 100 1 1 3652 3751 723444181 723444279 5.320000e-39 172.0
17 TraesCS2D01G501400 chr2B 84.138 145 19 4 3235 3378 723444321 723444462 1.940000e-28 137.0
18 TraesCS2D01G501400 chr2B 82.667 150 22 4 3683 3829 723444031 723444179 3.250000e-26 130.0
19 TraesCS2D01G501400 chr5D 89.835 728 52 8 1 707 431881815 431882541 0.000000e+00 915.0
20 TraesCS2D01G501400 chr5D 86.657 727 52 14 1 707 433531137 433530436 0.000000e+00 763.0
21 TraesCS2D01G501400 chr6B 87.787 696 66 14 17 700 557939299 557938611 0.000000e+00 797.0
22 TraesCS2D01G501400 chr6B 86.056 710 69 21 1 700 174529685 174528996 0.000000e+00 736.0
23 TraesCS2D01G501400 chr3B 86.351 718 75 17 4 707 747101881 747102589 0.000000e+00 761.0
24 TraesCS2D01G501400 chr3B 90.618 437 31 7 17 448 747101354 747101785 4.490000e-159 571.0
25 TraesCS2D01G501400 chr3A 86.299 708 53 20 20 707 540042751 540043434 0.000000e+00 730.0
26 TraesCS2D01G501400 chr6A 87.023 655 59 19 58 702 592446288 592446926 0.000000e+00 715.0
27 TraesCS2D01G501400 chr6A 83.867 750 72 22 1 706 452608983 452609727 0.000000e+00 669.0
28 TraesCS2D01G501400 chr7B 83.743 732 78 20 1 701 593069122 593069843 0.000000e+00 654.0
29 TraesCS2D01G501400 chr7B 84.129 649 81 16 54 691 6169285 6168648 3.420000e-170 608.0
30 TraesCS2D01G501400 chrUn 100.000 29 0 0 757 785 81709141 81709169 2.000000e-03 54.7
31 TraesCS2D01G501400 chrUn 100.000 29 0 0 757 785 168110201 168110229 2.000000e-03 54.7
32 TraesCS2D01G501400 chrUn 100.000 29 0 0 757 785 323975232 323975260 2.000000e-03 54.7
33 TraesCS2D01G501400 chrUn 100.000 29 0 0 757 785 457177534 457177506 2.000000e-03 54.7
34 TraesCS2D01G501400 chrUn 100.000 29 0 0 757 785 464449020 464448992 2.000000e-03 54.7
35 TraesCS2D01G501400 chrUn 100.000 29 0 0 757 785 465368299 465368271 2.000000e-03 54.7
36 TraesCS2D01G501400 chrUn 100.000 29 0 0 757 785 466298229 466298201 2.000000e-03 54.7
37 TraesCS2D01G501400 chr1A 100.000 29 0 0 757 785 10536436 10536408 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G501400 chr2D 595544004 595548008 4004 False 1797.750 6239 92.069000 1 4005 4 chr2D.!!$F1 4004
1 TraesCS2D01G501400 chr2A 729575808 729578730 2922 False 871.300 3856 90.496167 705 4005 6 chr2A.!!$F1 3300
2 TraesCS2D01G501400 chr2B 723441041 723444639 3598 False 768.625 3421 93.311375 705 4005 8 chr2B.!!$F1 3300
3 TraesCS2D01G501400 chr2B 677873006 677873628 622 True 702.000 702 87.302000 13 629 1 chr2B.!!$R1 616
4 TraesCS2D01G501400 chr5D 431881815 431882541 726 False 915.000 915 89.835000 1 707 1 chr5D.!!$F1 706
5 TraesCS2D01G501400 chr5D 433530436 433531137 701 True 763.000 763 86.657000 1 707 1 chr5D.!!$R1 706
6 TraesCS2D01G501400 chr6B 557938611 557939299 688 True 797.000 797 87.787000 17 700 1 chr6B.!!$R2 683
7 TraesCS2D01G501400 chr6B 174528996 174529685 689 True 736.000 736 86.056000 1 700 1 chr6B.!!$R1 699
8 TraesCS2D01G501400 chr3B 747101354 747102589 1235 False 666.000 761 88.484500 4 707 2 chr3B.!!$F1 703
9 TraesCS2D01G501400 chr3A 540042751 540043434 683 False 730.000 730 86.299000 20 707 1 chr3A.!!$F1 687
10 TraesCS2D01G501400 chr6A 592446288 592446926 638 False 715.000 715 87.023000 58 702 1 chr6A.!!$F2 644
11 TraesCS2D01G501400 chr6A 452608983 452609727 744 False 669.000 669 83.867000 1 706 1 chr6A.!!$F1 705
12 TraesCS2D01G501400 chr7B 593069122 593069843 721 False 654.000 654 83.743000 1 701 1 chr7B.!!$F1 700
13 TraesCS2D01G501400 chr7B 6168648 6169285 637 True 608.000 608 84.129000 54 691 1 chr7B.!!$R1 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
562 1182 0.179094 CGCGCCCCTATAAGACAACA 60.179 55.0 0.0 0.0 0.0 3.33 F
1821 2812 0.543749 ATGGCGAGGAAAGGAGAAGG 59.456 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1918 2909 0.035056 CCTTCCGATTTCCCTGCACT 60.035 55.0 0.0 0.0 0.00 4.40 R
3046 4040 0.029834 CTAAGCCATTGCCACGATGC 59.970 55.0 0.0 0.0 38.69 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
467 1085 7.394016 AGATTAAAATTGTGGAATTTGGGGAC 58.606 34.615 0.00 0.00 40.27 4.46
487 1105 1.079127 AAACCCTGGTCTGATCGCG 60.079 57.895 0.00 0.00 0.00 5.87
488 1106 1.827399 AAACCCTGGTCTGATCGCGT 61.827 55.000 5.77 0.00 0.00 6.01
538 1156 3.181503 GCTCGTCGTTCTGTGACCTATAA 60.182 47.826 0.00 0.00 32.68 0.98
562 1182 0.179094 CGCGCCCCTATAAGACAACA 60.179 55.000 0.00 0.00 0.00 3.33
633 1261 6.351796 GGTGGCATTGATGGGTAATTTTTACT 60.352 38.462 0.00 0.00 0.00 2.24
733 1361 6.263168 AGTCCAAATCAACGACATTTTCTCTT 59.737 34.615 0.00 0.00 0.00 2.85
768 1396 2.804856 GCAACGGTGCCTTTGTGT 59.195 55.556 16.48 0.00 45.68 3.72
769 1397 1.140804 GCAACGGTGCCTTTGTGTT 59.859 52.632 16.48 0.00 45.68 3.32
770 1398 0.869880 GCAACGGTGCCTTTGTGTTC 60.870 55.000 16.48 0.00 45.68 3.18
771 1399 0.738389 CAACGGTGCCTTTGTGTTCT 59.262 50.000 0.00 0.00 0.00 3.01
772 1400 0.738389 AACGGTGCCTTTGTGTTCTG 59.262 50.000 0.00 0.00 0.00 3.02
773 1401 1.101049 ACGGTGCCTTTGTGTTCTGG 61.101 55.000 0.00 0.00 0.00 3.86
774 1402 1.101049 CGGTGCCTTTGTGTTCTGGT 61.101 55.000 0.00 0.00 0.00 4.00
775 1403 1.812324 CGGTGCCTTTGTGTTCTGGTA 60.812 52.381 0.00 0.00 0.00 3.25
776 1404 1.880027 GGTGCCTTTGTGTTCTGGTAG 59.120 52.381 0.00 0.00 0.00 3.18
777 1405 2.572290 GTGCCTTTGTGTTCTGGTAGT 58.428 47.619 0.00 0.00 0.00 2.73
778 1406 2.548480 GTGCCTTTGTGTTCTGGTAGTC 59.452 50.000 0.00 0.00 0.00 2.59
779 1407 2.152016 GCCTTTGTGTTCTGGTAGTCC 58.848 52.381 0.00 0.00 0.00 3.85
780 1408 2.224548 GCCTTTGTGTTCTGGTAGTCCT 60.225 50.000 0.00 0.00 34.23 3.85
781 1409 3.747708 GCCTTTGTGTTCTGGTAGTCCTT 60.748 47.826 0.00 0.00 34.23 3.36
782 1410 4.461198 CCTTTGTGTTCTGGTAGTCCTTT 58.539 43.478 0.00 0.00 34.23 3.11
783 1411 5.617252 CCTTTGTGTTCTGGTAGTCCTTTA 58.383 41.667 0.00 0.00 34.23 1.85
1103 1754 3.253838 TGTTTCCTCCCCACCCCG 61.254 66.667 0.00 0.00 0.00 5.73
1104 1755 4.735358 GTTTCCTCCCCACCCCGC 62.735 72.222 0.00 0.00 0.00 6.13
1483 2474 3.718210 CTACCTCCTCAACCGCCGC 62.718 68.421 0.00 0.00 0.00 6.53
1805 2796 1.370609 CAGTCAGCTGCTTGAGATGG 58.629 55.000 9.47 0.00 38.72 3.51
1816 2807 1.208052 CTTGAGATGGCGAGGAAAGGA 59.792 52.381 0.00 0.00 0.00 3.36
1821 2812 0.543749 ATGGCGAGGAAAGGAGAAGG 59.456 55.000 0.00 0.00 0.00 3.46
1855 2846 1.975327 CGTGGAGGAGAAGCTTGGA 59.025 57.895 2.10 0.00 0.00 3.53
1918 2909 3.695606 GGGGCGAGTGCTGAGACA 61.696 66.667 0.00 0.00 42.25 3.41
2153 3144 2.637640 GGTGGGGAGGAGGAGGAGA 61.638 68.421 0.00 0.00 0.00 3.71
2312 3303 1.890979 CAGCAGATGGGCGATGACC 60.891 63.158 0.00 0.00 39.27 4.02
2377 3368 1.583477 GCAGTTTGAGAAGGCTGCC 59.417 57.895 11.65 11.65 45.96 4.85
2386 3377 4.341783 AAGGCTGCCGCAGAAGCT 62.342 61.111 24.80 1.79 37.23 3.74
2482 3473 2.158755 AGAAGTTTCTGGTGGAGGTGTG 60.159 50.000 0.00 0.00 35.89 3.82
2814 3805 5.530171 ACTCTTGAATGTATGATGGCATGTC 59.470 40.000 3.81 0.00 35.94 3.06
2994 3988 7.524717 AATTATTGTTTTGTGGTAGCAGAGT 57.475 32.000 0.00 0.00 0.00 3.24
2995 3989 4.836125 ATTGTTTTGTGGTAGCAGAGTG 57.164 40.909 0.00 0.00 0.00 3.51
3021 4015 7.254727 GCTTTTGATTTCTCGCTCTCTGATAAT 60.255 37.037 0.00 0.00 0.00 1.28
3022 4016 8.498054 TTTTGATTTCTCGCTCTCTGATAATT 57.502 30.769 0.00 0.00 0.00 1.40
3023 4017 7.706281 TTGATTTCTCGCTCTCTGATAATTC 57.294 36.000 0.00 0.00 0.00 2.17
3024 4018 6.219473 TGATTTCTCGCTCTCTGATAATTCC 58.781 40.000 0.00 0.00 0.00 3.01
3025 4019 5.860941 TTTCTCGCTCTCTGATAATTCCT 57.139 39.130 0.00 0.00 0.00 3.36
3026 4020 6.961360 TTTCTCGCTCTCTGATAATTCCTA 57.039 37.500 0.00 0.00 0.00 2.94
3027 4021 7.531857 TTTCTCGCTCTCTGATAATTCCTAT 57.468 36.000 0.00 0.00 0.00 2.57
3028 4022 7.531857 TTCTCGCTCTCTGATAATTCCTATT 57.468 36.000 0.00 0.00 0.00 1.73
3029 4023 7.531857 TCTCGCTCTCTGATAATTCCTATTT 57.468 36.000 0.00 0.00 0.00 1.40
3030 4024 7.374272 TCTCGCTCTCTGATAATTCCTATTTG 58.626 38.462 0.00 0.00 0.00 2.32
3031 4025 6.459066 TCGCTCTCTGATAATTCCTATTTGG 58.541 40.000 0.00 0.00 37.10 3.28
3032 4026 6.042093 TCGCTCTCTGATAATTCCTATTTGGT 59.958 38.462 0.00 0.00 37.07 3.67
3033 4027 6.708054 CGCTCTCTGATAATTCCTATTTGGTT 59.292 38.462 0.00 0.00 37.07 3.67
3034 4028 7.095439 CGCTCTCTGATAATTCCTATTTGGTTC 60.095 40.741 0.00 0.00 37.07 3.62
3035 4029 7.936301 GCTCTCTGATAATTCCTATTTGGTTCT 59.064 37.037 0.00 0.00 37.07 3.01
3038 4032 9.213799 CTCTGATAATTCCTATTTGGTTCTAGC 57.786 37.037 0.00 0.00 37.07 3.42
3039 4033 8.938883 TCTGATAATTCCTATTTGGTTCTAGCT 58.061 33.333 0.00 0.00 37.07 3.32
3040 4034 9.566432 CTGATAATTCCTATTTGGTTCTAGCTT 57.434 33.333 0.00 0.00 37.07 3.74
3041 4035 9.561069 TGATAATTCCTATTTGGTTCTAGCTTC 57.439 33.333 0.00 0.00 37.07 3.86
3042 4036 9.561069 GATAATTCCTATTTGGTTCTAGCTTCA 57.439 33.333 0.00 0.00 37.07 3.02
3044 4038 8.829373 AATTCCTATTTGGTTCTAGCTTCATT 57.171 30.769 0.00 0.00 37.07 2.57
3045 4039 8.829373 ATTCCTATTTGGTTCTAGCTTCATTT 57.171 30.769 0.00 0.00 37.07 2.32
3046 4040 7.630242 TCCTATTTGGTTCTAGCTTCATTTG 57.370 36.000 0.00 0.00 37.07 2.32
3047 4041 6.095440 TCCTATTTGGTTCTAGCTTCATTTGC 59.905 38.462 0.00 0.00 37.07 3.68
3048 4042 5.726980 ATTTGGTTCTAGCTTCATTTGCA 57.273 34.783 0.00 0.00 0.00 4.08
3049 4043 5.726980 TTTGGTTCTAGCTTCATTTGCAT 57.273 34.783 0.00 0.00 0.00 3.96
3050 4044 4.970662 TGGTTCTAGCTTCATTTGCATC 57.029 40.909 0.00 0.00 0.00 3.91
3051 4045 3.374988 TGGTTCTAGCTTCATTTGCATCG 59.625 43.478 0.00 0.00 0.00 3.84
3052 4046 3.375299 GGTTCTAGCTTCATTTGCATCGT 59.625 43.478 0.00 0.00 0.00 3.73
3053 4047 4.337763 GTTCTAGCTTCATTTGCATCGTG 58.662 43.478 0.00 0.00 0.00 4.35
3054 4048 2.938451 TCTAGCTTCATTTGCATCGTGG 59.062 45.455 0.00 0.00 0.00 4.94
3055 4049 0.171903 AGCTTCATTTGCATCGTGGC 59.828 50.000 0.00 0.00 0.00 5.01
3056 4050 0.109179 GCTTCATTTGCATCGTGGCA 60.109 50.000 0.00 0.00 43.19 4.92
3062 4056 2.361483 TGCATCGTGGCAATGGCT 60.361 55.556 8.59 0.00 41.65 4.75
3063 4057 1.978080 TGCATCGTGGCAATGGCTT 60.978 52.632 8.59 0.00 41.65 4.35
3064 4058 0.679321 TGCATCGTGGCAATGGCTTA 60.679 50.000 8.59 0.00 41.65 3.09
3065 4059 0.029834 GCATCGTGGCAATGGCTTAG 59.970 55.000 8.59 0.00 40.87 2.18
3066 4060 1.382522 CATCGTGGCAATGGCTTAGT 58.617 50.000 8.59 0.00 40.87 2.24
3067 4061 1.064505 CATCGTGGCAATGGCTTAGTG 59.935 52.381 8.59 0.00 40.87 2.74
3073 4067 2.268730 GCAATGGCTTAGTGCTTGTC 57.731 50.000 6.68 0.00 46.32 3.18
3074 4068 1.541147 GCAATGGCTTAGTGCTTGTCA 59.459 47.619 6.68 0.00 46.32 3.58
3075 4069 2.165030 GCAATGGCTTAGTGCTTGTCAT 59.835 45.455 6.68 0.00 46.32 3.06
3076 4070 3.378112 GCAATGGCTTAGTGCTTGTCATA 59.622 43.478 6.68 0.00 46.32 2.15
3077 4071 4.497006 GCAATGGCTTAGTGCTTGTCATAG 60.497 45.833 6.68 0.00 46.32 2.23
3078 4072 3.981071 TGGCTTAGTGCTTGTCATAGT 57.019 42.857 0.00 0.00 42.39 2.12
3079 4073 3.599343 TGGCTTAGTGCTTGTCATAGTG 58.401 45.455 0.00 0.00 42.39 2.74
3080 4074 2.352960 GGCTTAGTGCTTGTCATAGTGC 59.647 50.000 0.00 0.00 42.39 4.40
3081 4075 3.002791 GCTTAGTGCTTGTCATAGTGCA 58.997 45.455 0.00 0.00 38.95 4.57
3082 4076 3.624861 GCTTAGTGCTTGTCATAGTGCAT 59.375 43.478 0.00 0.00 37.76 3.96
3083 4077 4.095483 GCTTAGTGCTTGTCATAGTGCATT 59.905 41.667 0.00 0.00 37.76 3.56
3084 4078 5.728898 GCTTAGTGCTTGTCATAGTGCATTC 60.729 44.000 0.00 0.00 37.76 2.67
3085 4079 3.947868 AGTGCTTGTCATAGTGCATTCT 58.052 40.909 0.00 0.00 37.76 2.40
3086 4080 4.330250 AGTGCTTGTCATAGTGCATTCTT 58.670 39.130 0.00 0.00 37.76 2.52
3087 4081 4.155462 AGTGCTTGTCATAGTGCATTCTTG 59.845 41.667 0.00 0.00 37.76 3.02
3088 4082 4.154737 GTGCTTGTCATAGTGCATTCTTGA 59.845 41.667 0.00 0.00 37.76 3.02
3089 4083 4.945543 TGCTTGTCATAGTGCATTCTTGAT 59.054 37.500 0.00 0.00 0.00 2.57
3090 4084 6.037500 GTGCTTGTCATAGTGCATTCTTGATA 59.962 38.462 0.00 0.00 37.76 2.15
3091 4085 6.598850 TGCTTGTCATAGTGCATTCTTGATAA 59.401 34.615 0.00 0.00 0.00 1.75
3092 4086 7.283807 TGCTTGTCATAGTGCATTCTTGATAAT 59.716 33.333 0.00 0.00 0.00 1.28
3093 4087 7.802251 GCTTGTCATAGTGCATTCTTGATAATC 59.198 37.037 0.00 0.00 0.00 1.75
3094 4088 8.735692 TTGTCATAGTGCATTCTTGATAATCA 57.264 30.769 0.00 0.00 0.00 2.57
3095 4089 8.913487 TGTCATAGTGCATTCTTGATAATCAT 57.087 30.769 0.00 0.00 0.00 2.45
3096 4090 8.780249 TGTCATAGTGCATTCTTGATAATCATG 58.220 33.333 0.00 0.00 0.00 3.07
3097 4091 8.781196 GTCATAGTGCATTCTTGATAATCATGT 58.219 33.333 0.00 0.00 0.00 3.21
3098 4092 8.780249 TCATAGTGCATTCTTGATAATCATGTG 58.220 33.333 0.00 0.00 0.00 3.21
3099 4093 8.780249 CATAGTGCATTCTTGATAATCATGTGA 58.220 33.333 0.00 0.00 0.00 3.58
3100 4094 7.818997 AGTGCATTCTTGATAATCATGTGAT 57.181 32.000 0.00 0.00 36.07 3.06
3101 4095 7.649057 AGTGCATTCTTGATAATCATGTGATG 58.351 34.615 0.00 0.00 34.49 3.07
3102 4096 7.501225 AGTGCATTCTTGATAATCATGTGATGA 59.499 33.333 0.00 0.00 44.55 2.92
3117 4111 8.716646 TCATGTGATGATTATTGTTTCGTAGT 57.283 30.769 0.00 0.00 33.59 2.73
3118 4112 9.810545 TCATGTGATGATTATTGTTTCGTAGTA 57.189 29.630 0.00 0.00 33.59 1.82
3120 4114 8.126871 TGTGATGATTATTGTTTCGTAGTAGC 57.873 34.615 0.00 0.00 0.00 3.58
3121 4115 7.762159 TGTGATGATTATTGTTTCGTAGTAGCA 59.238 33.333 0.00 0.00 0.00 3.49
3122 4116 8.269424 GTGATGATTATTGTTTCGTAGTAGCAG 58.731 37.037 0.00 0.00 0.00 4.24
3123 4117 8.194769 TGATGATTATTGTTTCGTAGTAGCAGA 58.805 33.333 0.00 0.00 0.00 4.26
3124 4118 7.987268 TGATTATTGTTTCGTAGTAGCAGAG 57.013 36.000 0.00 0.00 0.00 3.35
3125 4119 6.475727 TGATTATTGTTTCGTAGTAGCAGAGC 59.524 38.462 0.00 0.00 0.00 4.09
3126 4120 2.649331 TGTTTCGTAGTAGCAGAGCC 57.351 50.000 0.00 0.00 0.00 4.70
3127 4121 2.168496 TGTTTCGTAGTAGCAGAGCCT 58.832 47.619 0.00 0.00 0.00 4.58
3128 4122 2.561419 TGTTTCGTAGTAGCAGAGCCTT 59.439 45.455 0.00 0.00 0.00 4.35
3129 4123 3.006537 TGTTTCGTAGTAGCAGAGCCTTT 59.993 43.478 0.00 0.00 0.00 3.11
3130 4124 3.955650 TTCGTAGTAGCAGAGCCTTTT 57.044 42.857 0.00 0.00 0.00 2.27
3131 4125 3.955650 TCGTAGTAGCAGAGCCTTTTT 57.044 42.857 0.00 0.00 0.00 1.94
3132 4126 3.585862 TCGTAGTAGCAGAGCCTTTTTG 58.414 45.455 0.00 0.00 0.00 2.44
3133 4127 3.257375 TCGTAGTAGCAGAGCCTTTTTGA 59.743 43.478 0.00 0.00 0.00 2.69
3134 4128 4.081642 TCGTAGTAGCAGAGCCTTTTTGAT 60.082 41.667 0.00 0.00 0.00 2.57
3135 4129 4.631813 CGTAGTAGCAGAGCCTTTTTGATT 59.368 41.667 0.00 0.00 0.00 2.57
3136 4130 5.122396 CGTAGTAGCAGAGCCTTTTTGATTT 59.878 40.000 0.00 0.00 0.00 2.17
3137 4131 6.348540 CGTAGTAGCAGAGCCTTTTTGATTTT 60.349 38.462 0.00 0.00 0.00 1.82
3138 4132 6.018589 AGTAGCAGAGCCTTTTTGATTTTC 57.981 37.500 0.00 0.00 0.00 2.29
3139 4133 3.905784 AGCAGAGCCTTTTTGATTTTCG 58.094 40.909 0.00 0.00 0.00 3.46
3140 4134 2.409715 GCAGAGCCTTTTTGATTTTCGC 59.590 45.455 0.00 0.00 0.00 4.70
3141 4135 3.858503 GCAGAGCCTTTTTGATTTTCGCT 60.859 43.478 0.00 0.00 0.00 4.93
3142 4136 3.916776 CAGAGCCTTTTTGATTTTCGCTC 59.083 43.478 0.00 0.00 41.18 5.03
3143 4137 3.823304 AGAGCCTTTTTGATTTTCGCTCT 59.177 39.130 2.94 2.94 45.00 4.09
3144 4138 4.083057 AGAGCCTTTTTGATTTTCGCTCTC 60.083 41.667 2.94 0.00 46.41 3.20
3145 4139 3.823304 AGCCTTTTTGATTTTCGCTCTCT 59.177 39.130 0.00 0.00 0.00 3.10
3146 4140 3.916776 GCCTTTTTGATTTTCGCTCTCTG 59.083 43.478 0.00 0.00 0.00 3.35
3147 4141 4.320494 GCCTTTTTGATTTTCGCTCTCTGA 60.320 41.667 0.00 0.00 0.00 3.27
3148 4142 5.620879 GCCTTTTTGATTTTCGCTCTCTGAT 60.621 40.000 0.00 0.00 0.00 2.90
3149 4143 6.403636 GCCTTTTTGATTTTCGCTCTCTGATA 60.404 38.462 0.00 0.00 0.00 2.15
3150 4144 7.530010 CCTTTTTGATTTTCGCTCTCTGATAA 58.470 34.615 0.00 0.00 0.00 1.75
3187 4181 4.481368 AACTTCATTTGCATCATGGCAT 57.519 36.364 0.00 0.00 44.48 4.40
3867 5117 0.105862 CCATGGCCCCTGATTGTCAT 60.106 55.000 0.00 0.00 0.00 3.06
3872 5122 2.244510 TGGCCCCTGATTGTCATTATGT 59.755 45.455 0.00 0.00 0.00 2.29
3873 5123 3.299503 GGCCCCTGATTGTCATTATGTT 58.700 45.455 0.00 0.00 0.00 2.71
3874 5124 3.706086 GGCCCCTGATTGTCATTATGTTT 59.294 43.478 0.00 0.00 0.00 2.83
3911 5169 3.122850 CTTTGATCGCCATGCCCC 58.877 61.111 0.00 0.00 0.00 5.80
3912 5170 1.454479 CTTTGATCGCCATGCCCCT 60.454 57.895 0.00 0.00 0.00 4.79
3913 5171 1.000233 TTTGATCGCCATGCCCCTT 60.000 52.632 0.00 0.00 0.00 3.95
3914 5172 1.321805 TTTGATCGCCATGCCCCTTG 61.322 55.000 0.00 0.00 0.00 3.61
3915 5173 2.192979 GATCGCCATGCCCCTTGA 59.807 61.111 0.00 0.00 0.00 3.02
3916 5174 1.895707 GATCGCCATGCCCCTTGAG 60.896 63.158 0.00 0.00 0.00 3.02
3917 5175 4.802051 TCGCCATGCCCCTTGAGC 62.802 66.667 0.00 0.00 0.00 4.26
3936 5194 7.041508 CCTTGAGCCTTGATTGTCAGTATATTC 60.042 40.741 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 128 4.647424 TGGTCGGGAAATTAAATCATGC 57.353 40.909 0.00 0.00 0.00 4.06
168 175 7.009568 TGCAAAACTGTTCGCAAAATAATTT 57.990 28.000 13.29 0.00 0.00 1.82
169 176 6.595772 TGCAAAACTGTTCGCAAAATAATT 57.404 29.167 13.29 0.00 0.00 1.40
487 1105 0.733150 GTTGGCCGATTGCTCCTTAC 59.267 55.000 0.00 0.00 40.92 2.34
488 1106 0.393808 GGTTGGCCGATTGCTCCTTA 60.394 55.000 0.00 0.00 40.92 2.69
538 1156 0.892358 TCTTATAGGGGCGCGACGAT 60.892 55.000 12.10 3.65 0.00 3.73
562 1182 1.270785 CCAAAAATTGCCGCCTCCTTT 60.271 47.619 0.00 0.00 0.00 3.11
633 1261 7.337436 CCGTCATTAAAATTACCCTCCAACTTA 59.663 37.037 0.00 0.00 0.00 2.24
718 1346 7.273815 GTCTATCGAGAAAGAGAAAATGTCGTT 59.726 37.037 0.00 0.00 31.96 3.85
719 1347 6.748198 GTCTATCGAGAAAGAGAAAATGTCGT 59.252 38.462 0.00 0.00 31.96 4.34
733 1361 0.454600 GCCACACCGTCTATCGAGAA 59.545 55.000 0.00 0.00 42.86 2.87
765 1393 7.559170 TCCTATACTAAAGGACTACCAGAACAC 59.441 40.741 0.00 0.00 38.24 3.32
766 1394 7.645942 TCCTATACTAAAGGACTACCAGAACA 58.354 38.462 0.00 0.00 38.24 3.18
777 1405 8.716674 ATAAACCATCGTCCTATACTAAAGGA 57.283 34.615 0.00 0.00 40.92 3.36
1020 1670 0.168128 CTCGGCGTTTGAAATGACCC 59.832 55.000 6.85 0.00 0.00 4.46
1255 2246 2.203788 TTGAGGAGGTCGGTGGCT 60.204 61.111 0.00 0.00 0.00 4.75
1483 2474 1.376037 GAAGGCGTGGTGGAGGAAG 60.376 63.158 0.00 0.00 0.00 3.46
1609 2600 2.585247 GCGACATGGTACCCGAGC 60.585 66.667 10.07 8.39 0.00 5.03
1805 2796 1.222113 CCCCTTCTCCTTTCCTCGC 59.778 63.158 0.00 0.00 0.00 5.03
1816 2807 1.229984 CCCCTTCTCCACCCCTTCT 60.230 63.158 0.00 0.00 0.00 2.85
1821 2812 3.787001 CGCTCCCCTTCTCCACCC 61.787 72.222 0.00 0.00 0.00 4.61
1855 2846 0.744281 CAAACAACAGCCCGACCTTT 59.256 50.000 0.00 0.00 0.00 3.11
1918 2909 0.035056 CCTTCCGATTTCCCTGCACT 60.035 55.000 0.00 0.00 0.00 4.40
1960 2951 5.629079 ATCCCTTTTCGAGCTTAACAAAG 57.371 39.130 0.00 0.00 0.00 2.77
2312 3303 5.278808 CCTCATCAAATGTAATGGCATCAGG 60.279 44.000 0.00 0.00 0.00 3.86
2377 3368 3.207669 GGCATCCCAGCTTCTGCG 61.208 66.667 0.00 0.00 45.42 5.18
2386 3377 4.028490 GGTGTCACCGGCATCCCA 62.028 66.667 6.18 0.00 0.00 4.37
2482 3473 2.169978 AGGAACATTACCTTCGCTACCC 59.830 50.000 0.00 0.00 33.55 3.69
2723 3714 2.646798 AGGAAGGGCTCTTCTTCAACAT 59.353 45.455 25.19 0.00 46.42 2.71
2814 3805 2.895372 GGCAGAATGGTACGGCCG 60.895 66.667 26.86 26.86 38.59 6.13
2994 3988 3.434641 CAGAGAGCGAGAAATCAAAAGCA 59.565 43.478 0.00 0.00 0.00 3.91
2995 3989 3.681897 TCAGAGAGCGAGAAATCAAAAGC 59.318 43.478 0.00 0.00 0.00 3.51
3021 4015 7.362920 GCAAATGAAGCTAGAACCAAATAGGAA 60.363 37.037 0.00 0.00 41.22 3.36
3022 4016 6.095440 GCAAATGAAGCTAGAACCAAATAGGA 59.905 38.462 0.00 0.00 41.22 2.94
3023 4017 6.127647 TGCAAATGAAGCTAGAACCAAATAGG 60.128 38.462 0.00 0.00 45.67 2.57
3024 4018 6.855836 TGCAAATGAAGCTAGAACCAAATAG 58.144 36.000 0.00 0.00 0.00 1.73
3025 4019 6.832520 TGCAAATGAAGCTAGAACCAAATA 57.167 33.333 0.00 0.00 0.00 1.40
3026 4020 5.726980 TGCAAATGAAGCTAGAACCAAAT 57.273 34.783 0.00 0.00 0.00 2.32
3027 4021 5.619757 CGATGCAAATGAAGCTAGAACCAAA 60.620 40.000 0.00 0.00 0.00 3.28
3028 4022 4.142622 CGATGCAAATGAAGCTAGAACCAA 60.143 41.667 0.00 0.00 0.00 3.67
3029 4023 3.374988 CGATGCAAATGAAGCTAGAACCA 59.625 43.478 0.00 0.00 0.00 3.67
3030 4024 3.375299 ACGATGCAAATGAAGCTAGAACC 59.625 43.478 0.00 0.00 0.00 3.62
3031 4025 4.337763 CACGATGCAAATGAAGCTAGAAC 58.662 43.478 0.00 0.00 0.00 3.01
3032 4026 3.374988 CCACGATGCAAATGAAGCTAGAA 59.625 43.478 0.00 0.00 0.00 2.10
3033 4027 2.938451 CCACGATGCAAATGAAGCTAGA 59.062 45.455 0.00 0.00 0.00 2.43
3034 4028 2.540361 GCCACGATGCAAATGAAGCTAG 60.540 50.000 0.00 0.00 0.00 3.42
3035 4029 1.401552 GCCACGATGCAAATGAAGCTA 59.598 47.619 0.00 0.00 0.00 3.32
3036 4030 0.171903 GCCACGATGCAAATGAAGCT 59.828 50.000 0.00 0.00 0.00 3.74
3037 4031 0.109179 TGCCACGATGCAAATGAAGC 60.109 50.000 0.00 0.00 38.56 3.86
3045 4039 0.679321 TAAGCCATTGCCACGATGCA 60.679 50.000 0.00 0.00 40.07 3.96
3046 4040 0.029834 CTAAGCCATTGCCACGATGC 59.970 55.000 0.00 0.00 38.69 3.91
3047 4041 1.064505 CACTAAGCCATTGCCACGATG 59.935 52.381 0.00 0.00 38.69 3.84
3048 4042 1.382522 CACTAAGCCATTGCCACGAT 58.617 50.000 0.00 0.00 38.69 3.73
3049 4043 1.305219 GCACTAAGCCATTGCCACGA 61.305 55.000 0.00 0.00 38.69 4.35
3050 4044 1.137404 GCACTAAGCCATTGCCACG 59.863 57.895 0.00 0.00 38.69 4.94
3060 4054 3.002791 TGCACTATGACAAGCACTAAGC 58.997 45.455 0.00 0.00 46.19 3.09
3061 4055 5.583854 AGAATGCACTATGACAAGCACTAAG 59.416 40.000 0.00 0.00 40.14 2.18
3062 4056 5.491070 AGAATGCACTATGACAAGCACTAA 58.509 37.500 0.00 0.00 40.14 2.24
3063 4057 5.089970 AGAATGCACTATGACAAGCACTA 57.910 39.130 0.00 0.00 40.14 2.74
3064 4058 3.947868 AGAATGCACTATGACAAGCACT 58.052 40.909 0.00 0.00 40.14 4.40
3065 4059 4.154737 TCAAGAATGCACTATGACAAGCAC 59.845 41.667 0.00 0.00 40.14 4.40
3066 4060 4.325972 TCAAGAATGCACTATGACAAGCA 58.674 39.130 0.00 0.00 41.73 3.91
3067 4061 4.952262 TCAAGAATGCACTATGACAAGC 57.048 40.909 0.00 0.00 0.00 4.01
3068 4062 8.833493 TGATTATCAAGAATGCACTATGACAAG 58.167 33.333 0.00 0.00 0.00 3.16
3069 4063 8.735692 TGATTATCAAGAATGCACTATGACAA 57.264 30.769 0.00 0.00 0.00 3.18
3070 4064 8.780249 CATGATTATCAAGAATGCACTATGACA 58.220 33.333 0.00 0.00 0.00 3.58
3071 4065 8.781196 ACATGATTATCAAGAATGCACTATGAC 58.219 33.333 4.37 0.00 0.00 3.06
3072 4066 8.780249 CACATGATTATCAAGAATGCACTATGA 58.220 33.333 4.37 0.00 0.00 2.15
3073 4067 8.780249 TCACATGATTATCAAGAATGCACTATG 58.220 33.333 4.37 0.00 0.00 2.23
3074 4068 8.913487 TCACATGATTATCAAGAATGCACTAT 57.087 30.769 4.37 0.00 0.00 2.12
3075 4069 8.780249 CATCACATGATTATCAAGAATGCACTA 58.220 33.333 4.37 0.00 31.21 2.74
3076 4070 7.501225 TCATCACATGATTATCAAGAATGCACT 59.499 33.333 4.37 0.00 33.59 4.40
3077 4071 7.645402 TCATCACATGATTATCAAGAATGCAC 58.355 34.615 4.37 0.00 33.59 4.57
3078 4072 7.811117 TCATCACATGATTATCAAGAATGCA 57.189 32.000 4.37 0.00 33.59 3.96
3092 4086 8.716646 ACTACGAAACAATAATCATCACATGA 57.283 30.769 0.00 0.00 44.55 3.07
3094 4088 8.765219 GCTACTACGAAACAATAATCATCACAT 58.235 33.333 0.00 0.00 0.00 3.21
3095 4089 7.762159 TGCTACTACGAAACAATAATCATCACA 59.238 33.333 0.00 0.00 0.00 3.58
3096 4090 8.126871 TGCTACTACGAAACAATAATCATCAC 57.873 34.615 0.00 0.00 0.00 3.06
3097 4091 8.194769 TCTGCTACTACGAAACAATAATCATCA 58.805 33.333 0.00 0.00 0.00 3.07
3098 4092 8.575565 TCTGCTACTACGAAACAATAATCATC 57.424 34.615 0.00 0.00 0.00 2.92
3099 4093 7.169982 GCTCTGCTACTACGAAACAATAATCAT 59.830 37.037 0.00 0.00 0.00 2.45
3100 4094 6.475727 GCTCTGCTACTACGAAACAATAATCA 59.524 38.462 0.00 0.00 0.00 2.57
3101 4095 6.074249 GGCTCTGCTACTACGAAACAATAATC 60.074 42.308 0.00 0.00 0.00 1.75
3102 4096 5.753921 GGCTCTGCTACTACGAAACAATAAT 59.246 40.000 0.00 0.00 0.00 1.28
3103 4097 5.105473 AGGCTCTGCTACTACGAAACAATAA 60.105 40.000 0.00 0.00 0.00 1.40
3104 4098 4.401519 AGGCTCTGCTACTACGAAACAATA 59.598 41.667 0.00 0.00 0.00 1.90
3105 4099 3.195825 AGGCTCTGCTACTACGAAACAAT 59.804 43.478 0.00 0.00 0.00 2.71
3106 4100 2.561419 AGGCTCTGCTACTACGAAACAA 59.439 45.455 0.00 0.00 0.00 2.83
3107 4101 2.168496 AGGCTCTGCTACTACGAAACA 58.832 47.619 0.00 0.00 0.00 2.83
3108 4102 2.943449 AGGCTCTGCTACTACGAAAC 57.057 50.000 0.00 0.00 0.00 2.78
3109 4103 3.955650 AAAGGCTCTGCTACTACGAAA 57.044 42.857 0.00 0.00 0.00 3.46
3110 4104 3.955650 AAAAGGCTCTGCTACTACGAA 57.044 42.857 0.00 0.00 0.00 3.85
3111 4105 3.257375 TCAAAAAGGCTCTGCTACTACGA 59.743 43.478 0.00 0.00 0.00 3.43
3112 4106 3.585862 TCAAAAAGGCTCTGCTACTACG 58.414 45.455 0.00 0.00 0.00 3.51
3113 4107 6.502136 AAATCAAAAAGGCTCTGCTACTAC 57.498 37.500 0.00 0.00 0.00 2.73
3114 4108 6.128282 CGAAAATCAAAAAGGCTCTGCTACTA 60.128 38.462 0.00 0.00 0.00 1.82
3115 4109 5.335191 CGAAAATCAAAAAGGCTCTGCTACT 60.335 40.000 0.00 0.00 0.00 2.57
3116 4110 4.853743 CGAAAATCAAAAAGGCTCTGCTAC 59.146 41.667 0.00 0.00 0.00 3.58
3117 4111 4.615912 GCGAAAATCAAAAAGGCTCTGCTA 60.616 41.667 0.00 0.00 0.00 3.49
3118 4112 3.858503 GCGAAAATCAAAAAGGCTCTGCT 60.859 43.478 0.00 0.00 0.00 4.24
3119 4113 2.409715 GCGAAAATCAAAAAGGCTCTGC 59.590 45.455 0.00 0.00 0.00 4.26
3120 4114 3.905784 AGCGAAAATCAAAAAGGCTCTG 58.094 40.909 0.00 0.00 0.00 3.35
3121 4115 4.166187 GAGCGAAAATCAAAAAGGCTCT 57.834 40.909 3.10 0.00 41.51 4.09
3122 4116 4.083057 AGAGAGCGAAAATCAAAAAGGCTC 60.083 41.667 2.12 2.12 44.20 4.70
3123 4117 3.823304 AGAGAGCGAAAATCAAAAAGGCT 59.177 39.130 0.00 0.00 0.00 4.58
3124 4118 3.916776 CAGAGAGCGAAAATCAAAAAGGC 59.083 43.478 0.00 0.00 0.00 4.35
3125 4119 5.362556 TCAGAGAGCGAAAATCAAAAAGG 57.637 39.130 0.00 0.00 0.00 3.11
3126 4120 9.565213 AATTATCAGAGAGCGAAAATCAAAAAG 57.435 29.630 0.00 0.00 0.00 2.27
3127 4121 9.559958 GAATTATCAGAGAGCGAAAATCAAAAA 57.440 29.630 0.00 0.00 0.00 1.94
3128 4122 8.184192 GGAATTATCAGAGAGCGAAAATCAAAA 58.816 33.333 0.00 0.00 0.00 2.44
3129 4123 7.201732 GGGAATTATCAGAGAGCGAAAATCAAA 60.202 37.037 0.00 0.00 0.00 2.69
3130 4124 6.260936 GGGAATTATCAGAGAGCGAAAATCAA 59.739 38.462 0.00 0.00 0.00 2.57
3131 4125 5.760253 GGGAATTATCAGAGAGCGAAAATCA 59.240 40.000 0.00 0.00 0.00 2.57
3132 4126 5.994668 AGGGAATTATCAGAGAGCGAAAATC 59.005 40.000 0.00 0.00 0.00 2.17
3133 4127 5.934781 AGGGAATTATCAGAGAGCGAAAAT 58.065 37.500 0.00 0.00 0.00 1.82
3134 4128 5.359194 AGGGAATTATCAGAGAGCGAAAA 57.641 39.130 0.00 0.00 0.00 2.29
3135 4129 5.359194 AAGGGAATTATCAGAGAGCGAAA 57.641 39.130 0.00 0.00 0.00 3.46
3136 4130 5.359194 AAAGGGAATTATCAGAGAGCGAA 57.641 39.130 0.00 0.00 0.00 4.70
3137 4131 5.118990 CAAAAGGGAATTATCAGAGAGCGA 58.881 41.667 0.00 0.00 0.00 4.93
3138 4132 4.274459 CCAAAAGGGAATTATCAGAGAGCG 59.726 45.833 0.00 0.00 40.01 5.03
3139 4133 5.196695 ACCAAAAGGGAATTATCAGAGAGC 58.803 41.667 0.00 0.00 41.15 4.09
3140 4134 7.115414 AGAACCAAAAGGGAATTATCAGAGAG 58.885 38.462 0.00 0.00 41.15 3.20
3141 4135 7.032598 AGAACCAAAAGGGAATTATCAGAGA 57.967 36.000 0.00 0.00 41.15 3.10
3142 4136 8.678199 GTTAGAACCAAAAGGGAATTATCAGAG 58.322 37.037 0.00 0.00 41.15 3.35
3143 4137 8.390921 AGTTAGAACCAAAAGGGAATTATCAGA 58.609 33.333 0.00 0.00 41.15 3.27
3144 4138 8.581253 AGTTAGAACCAAAAGGGAATTATCAG 57.419 34.615 0.00 0.00 41.15 2.90
3145 4139 8.950007 AAGTTAGAACCAAAAGGGAATTATCA 57.050 30.769 0.00 0.00 41.15 2.15
3146 4140 9.020731 TGAAGTTAGAACCAAAAGGGAATTATC 57.979 33.333 0.00 0.00 41.15 1.75
3147 4141 8.950007 TGAAGTTAGAACCAAAAGGGAATTAT 57.050 30.769 0.00 0.00 41.15 1.28
3148 4142 8.950007 ATGAAGTTAGAACCAAAAGGGAATTA 57.050 30.769 0.00 0.00 41.15 1.40
3149 4143 7.855784 ATGAAGTTAGAACCAAAAGGGAATT 57.144 32.000 0.00 0.00 41.15 2.17
3150 4144 7.855784 AATGAAGTTAGAACCAAAAGGGAAT 57.144 32.000 0.00 0.00 41.15 3.01
3187 4181 3.138884 TCATGAACTGCACTAAGCCAA 57.861 42.857 0.00 0.00 44.83 4.52
3224 4474 4.742438 ATGCAGTTTGTACTTTGTACGG 57.258 40.909 0.00 0.00 30.26 4.02
3874 5124 5.772825 AAGCATACTGACAGAAGCAAAAA 57.227 34.783 10.08 0.00 0.00 1.94
3911 5169 7.714377 AGAATATACTGACAATCAAGGCTCAAG 59.286 37.037 0.00 0.00 0.00 3.02
3912 5170 7.496920 CAGAATATACTGACAATCAAGGCTCAA 59.503 37.037 0.00 0.00 39.94 3.02
3913 5171 6.988580 CAGAATATACTGACAATCAAGGCTCA 59.011 38.462 0.00 0.00 39.94 4.26
3914 5172 6.073331 GCAGAATATACTGACAATCAAGGCTC 60.073 42.308 0.00 0.00 39.94 4.70
3915 5173 5.762218 GCAGAATATACTGACAATCAAGGCT 59.238 40.000 0.00 0.00 39.94 4.58
3916 5174 5.762218 AGCAGAATATACTGACAATCAAGGC 59.238 40.000 0.00 0.00 39.94 4.35
3917 5175 7.714377 AGAAGCAGAATATACTGACAATCAAGG 59.286 37.037 0.00 0.00 39.94 3.61
3918 5176 8.549548 CAGAAGCAGAATATACTGACAATCAAG 58.450 37.037 0.00 0.00 39.94 3.02
3936 5194 8.119226 GCAATTAAAGTATACTGACAGAAGCAG 58.881 37.037 10.08 0.00 39.26 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.