Multiple sequence alignment - TraesCS2D01G500900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G500900 chr2D 100.000 3673 0 0 1 3673 595292289 595288617 0.000000e+00 6783.0
1 TraesCS2D01G500900 chr2A 89.755 3514 179 89 4 3416 729502727 729499294 0.000000e+00 4327.0
2 TraesCS2D01G500900 chr2A 80.909 110 19 2 2070 2178 196504816 196504924 6.540000e-13 86.1
3 TraesCS2D01G500900 chr2A 94.737 38 2 0 1840 1877 758551736 758551773 3.960000e-05 60.2
4 TraesCS2D01G500900 chr2B 90.478 3035 135 84 95 3066 723045286 723042343 0.000000e+00 3862.0
5 TraesCS2D01G500900 chr2B 88.764 89 8 2 14 101 723046497 723046410 1.390000e-19 108.0
6 TraesCS2D01G500900 chr2B 94.737 38 2 0 1840 1877 771194956 771194919 3.960000e-05 60.2
7 TraesCS2D01G500900 chr2B 94.737 38 2 0 1840 1877 771216931 771216968 3.960000e-05 60.2
8 TraesCS2D01G500900 chr1D 90.076 262 23 3 3413 3673 383475543 383475284 1.630000e-88 337.0
9 TraesCS2D01G500900 chr3D 92.478 226 14 2 3451 3673 303792370 303792145 1.650000e-83 320.0
10 TraesCS2D01G500900 chr3D 88.346 266 27 4 3411 3673 121528697 121528961 2.130000e-82 316.0
11 TraesCS2D01G500900 chr3D 91.403 221 18 1 3454 3673 448290710 448290490 5.960000e-78 302.0
12 TraesCS2D01G500900 chr3D 80.220 91 14 3 2084 2172 516385312 516385224 8.510000e-07 65.8
13 TraesCS2D01G500900 chr3D 97.297 37 1 0 1842 1878 28210075 28210039 3.060000e-06 63.9
14 TraesCS2D01G500900 chr3B 88.258 264 28 2 3413 3673 731502277 731502014 2.750000e-81 313.0
15 TraesCS2D01G500900 chr3B 80.220 91 14 3 2084 2172 679646178 679646090 8.510000e-07 65.8
16 TraesCS2D01G500900 chr7D 88.327 257 26 4 3420 3673 453390629 453390374 4.610000e-79 305.0
17 TraesCS2D01G500900 chr5B 91.071 224 19 1 3451 3673 66019364 66019587 5.960000e-78 302.0
18 TraesCS2D01G500900 chr5B 81.343 134 22 3 1800 1932 373217031 373216900 5.020000e-19 106.0
19 TraesCS2D01G500900 chr6B 88.571 245 27 1 3430 3673 408494689 408494445 2.770000e-76 296.0
20 TraesCS2D01G500900 chr6B 85.448 268 33 5 3409 3673 126786239 126786503 1.300000e-69 274.0
21 TraesCS2D01G500900 chr5D 82.090 134 21 3 1800 1932 322005208 322005339 1.080000e-20 111.0
22 TraesCS2D01G500900 chr5A 82.090 134 21 3 1800 1932 417255816 417255947 1.080000e-20 111.0
23 TraesCS2D01G500900 chr3A 81.319 91 13 3 2084 2172 651588269 651588181 1.830000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G500900 chr2D 595288617 595292289 3672 True 6783 6783 100.000 1 3673 1 chr2D.!!$R1 3672
1 TraesCS2D01G500900 chr2A 729499294 729502727 3433 True 4327 4327 89.755 4 3416 1 chr2A.!!$R1 3412
2 TraesCS2D01G500900 chr2B 723042343 723046497 4154 True 1985 3862 89.621 14 3066 2 chr2B.!!$R2 3052

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
724 1870 0.242286 ACGTACTCTGCTCACTGCTG 59.758 55.0 0.0 0.0 43.37 4.41 F
1390 2593 0.045469 AGCTGGGGAGAGGAGGATTT 59.955 55.0 0.0 0.0 0.00 2.17 F
1481 2714 0.166814 GCACGATTGAACAGAGGTGC 59.833 55.0 0.0 0.0 43.07 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2375 3627 0.107312 CCTGCATCACCTCCTTCTGG 60.107 60.0 0.0 0.0 0.0 3.86 R
2376 3628 0.617413 ACCTGCATCACCTCCTTCTG 59.383 55.0 0.0 0.0 0.0 3.02 R
3476 4748 0.034896 GAGGCTCGTCTGGGTCAAAA 59.965 55.0 0.0 0.0 0.0 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 32 1.406903 AAGCTCCAATGGCTAATGGC 58.593 50.000 0.00 0.00 39.30 4.40
61 63 7.229707 TCGTTGATTGGGAAAGAAGTAATCAAA 59.770 33.333 11.00 0.00 44.49 2.69
63 65 7.227049 TGATTGGGAAAGAAGTAATCAAACC 57.773 36.000 0.00 0.00 35.51 3.27
65 67 5.333566 TGGGAAAGAAGTAATCAAACCCT 57.666 39.130 0.00 0.00 36.93 4.34
549 1693 3.090532 ATCGGAAGCCTCCACCCC 61.091 66.667 1.47 0.00 42.58 4.95
588 1732 0.599204 TTTCCGAACGCTCACTGGTC 60.599 55.000 0.00 0.00 0.00 4.02
672 1816 1.280746 GACTGTCCGTCGTCGTTCA 59.719 57.895 0.71 0.00 32.04 3.18
686 1830 1.135373 TCGTTCACGAAGGATCTGAGC 60.135 52.381 0.00 0.00 46.30 4.26
687 1831 1.402852 CGTTCACGAAGGATCTGAGCA 60.403 52.381 0.00 0.00 43.02 4.26
688 1832 2.266554 GTTCACGAAGGATCTGAGCAG 58.733 52.381 0.00 0.00 0.00 4.24
718 1864 1.209383 GCACGACGTACTCTGCTCA 59.791 57.895 0.00 0.00 0.00 4.26
724 1870 0.242286 ACGTACTCTGCTCACTGCTG 59.758 55.000 0.00 0.00 43.37 4.41
745 1913 5.891451 CTGTGCAGCTGTGTATAGTAGTAA 58.109 41.667 16.64 0.00 0.00 2.24
746 1914 5.647589 TGTGCAGCTGTGTATAGTAGTAAC 58.352 41.667 16.64 0.00 0.00 2.50
778 1947 7.712797 TCTGAATTTTACAAAGTCCAAACTCC 58.287 34.615 0.00 0.00 33.48 3.85
794 1966 6.440647 TCCAAACTCCTATGATACAAGTCAGT 59.559 38.462 0.00 0.00 0.00 3.41
795 1967 7.038302 TCCAAACTCCTATGATACAAGTCAGTT 60.038 37.037 0.00 0.00 0.00 3.16
796 1968 7.607991 CCAAACTCCTATGATACAAGTCAGTTT 59.392 37.037 0.00 0.00 0.00 2.66
797 1969 8.446273 CAAACTCCTATGATACAAGTCAGTTTG 58.554 37.037 0.00 0.00 35.20 2.93
798 1970 7.246171 ACTCCTATGATACAAGTCAGTTTGT 57.754 36.000 0.00 0.00 43.34 2.83
810 1982 7.898725 CAAGTCAGTTTGTCTTGTGATTTAC 57.101 36.000 7.56 0.00 38.24 2.01
820 1992 6.228258 TGTCTTGTGATTTACCCTGTACTTC 58.772 40.000 0.00 0.00 0.00 3.01
827 1999 6.255887 GTGATTTACCCTGTACTTCTTCATCG 59.744 42.308 0.00 0.00 0.00 3.84
845 2017 6.741992 TCATCGTTTGCAACTCTGAATTAT 57.258 33.333 0.00 0.00 0.00 1.28
846 2018 6.775088 TCATCGTTTGCAACTCTGAATTATC 58.225 36.000 0.00 0.00 0.00 1.75
849 2021 4.155826 CGTTTGCAACTCTGAATTATCCCA 59.844 41.667 0.00 0.00 0.00 4.37
851 2023 4.574674 TGCAACTCTGAATTATCCCACT 57.425 40.909 0.00 0.00 0.00 4.00
852 2024 4.517285 TGCAACTCTGAATTATCCCACTC 58.483 43.478 0.00 0.00 0.00 3.51
853 2025 3.879892 GCAACTCTGAATTATCCCACTCC 59.120 47.826 0.00 0.00 0.00 3.85
854 2026 4.455606 CAACTCTGAATTATCCCACTCCC 58.544 47.826 0.00 0.00 0.00 4.30
855 2027 3.736094 ACTCTGAATTATCCCACTCCCA 58.264 45.455 0.00 0.00 0.00 4.37
856 2028 3.456277 ACTCTGAATTATCCCACTCCCAC 59.544 47.826 0.00 0.00 0.00 4.61
857 2029 2.777692 TCTGAATTATCCCACTCCCACC 59.222 50.000 0.00 0.00 0.00 4.61
858 2030 1.850345 TGAATTATCCCACTCCCACCC 59.150 52.381 0.00 0.00 0.00 4.61
859 2031 1.850345 GAATTATCCCACTCCCACCCA 59.150 52.381 0.00 0.00 0.00 4.51
860 2032 1.222567 ATTATCCCACTCCCACCCAC 58.777 55.000 0.00 0.00 0.00 4.61
861 2033 0.917333 TTATCCCACTCCCACCCACC 60.917 60.000 0.00 0.00 0.00 4.61
862 2034 2.126375 TATCCCACTCCCACCCACCA 62.126 60.000 0.00 0.00 0.00 4.17
863 2035 3.966543 CCCACTCCCACCCACCAC 61.967 72.222 0.00 0.00 0.00 4.16
864 2036 3.966543 CCACTCCCACCCACCACC 61.967 72.222 0.00 0.00 0.00 4.61
865 2037 3.174987 CACTCCCACCCACCACCA 61.175 66.667 0.00 0.00 0.00 4.17
866 2038 3.175710 ACTCCCACCCACCACCAC 61.176 66.667 0.00 0.00 0.00 4.16
867 2039 3.966543 CTCCCACCCACCACCACC 61.967 72.222 0.00 0.00 0.00 4.61
868 2040 4.845307 TCCCACCCACCACCACCA 62.845 66.667 0.00 0.00 0.00 4.17
869 2041 4.596585 CCCACCCACCACCACCAC 62.597 72.222 0.00 0.00 0.00 4.16
870 2042 3.814906 CCACCCACCACCACCACA 61.815 66.667 0.00 0.00 0.00 4.17
871 2043 2.518349 CACCCACCACCACCACAC 60.518 66.667 0.00 0.00 0.00 3.82
872 2044 3.018193 ACCCACCACCACCACACA 61.018 61.111 0.00 0.00 0.00 3.72
873 2045 2.518349 CCCACCACCACCACACAC 60.518 66.667 0.00 0.00 0.00 3.82
874 2046 2.273776 CCACCACCACCACACACA 59.726 61.111 0.00 0.00 0.00 3.72
875 2047 2.118404 CCACCACCACCACACACAC 61.118 63.158 0.00 0.00 0.00 3.82
876 2048 1.377856 CACCACCACCACACACACA 60.378 57.895 0.00 0.00 0.00 3.72
877 2049 1.377987 ACCACCACCACACACACAC 60.378 57.895 0.00 0.00 0.00 3.82
878 2050 1.377856 CCACCACCACACACACACA 60.378 57.895 0.00 0.00 0.00 3.72
890 2062 5.238432 CCACACACACACACATTATGTTAGT 59.762 40.000 0.00 0.00 40.64 2.24
895 2067 6.649141 ACACACACACATTATGTTAGTGTAGG 59.351 38.462 23.15 17.64 46.86 3.18
899 2071 6.014070 ACACACATTATGTTAGTGTAGGTGGA 60.014 38.462 16.44 0.00 44.02 4.02
900 2072 7.047891 CACACATTATGTTAGTGTAGGTGGAT 58.952 38.462 7.41 0.00 44.02 3.41
915 2087 2.420022 GGTGGATCGAGTTGATTTGTGG 59.580 50.000 0.00 0.00 37.47 4.17
935 2107 1.850377 TTGCTGTTCAACAATTGGCG 58.150 45.000 10.83 0.00 0.00 5.69
936 2108 0.597118 TGCTGTTCAACAATTGGCGC 60.597 50.000 10.83 0.00 0.00 6.53
1098 2270 1.600663 GCCCTCGTCATAGTCATCGTG 60.601 57.143 0.00 0.00 0.00 4.35
1110 2282 1.300465 CATCGTGATCCTGCTCGGG 60.300 63.158 0.00 0.00 0.00 5.14
1155 2327 1.584175 GCATCATGAGGAGACTGCTG 58.416 55.000 12.39 0.00 44.43 4.41
1183 2355 3.703001 GGAGATGTCCTTCAGGTGAAA 57.297 47.619 0.54 0.00 40.17 2.69
1184 2356 4.021102 GGAGATGTCCTTCAGGTGAAAA 57.979 45.455 0.54 0.00 40.17 2.29
1185 2357 3.753797 GGAGATGTCCTTCAGGTGAAAAC 59.246 47.826 0.54 0.00 40.17 2.43
1188 2360 2.285083 TGTCCTTCAGGTGAAAACGTG 58.715 47.619 0.00 0.00 36.34 4.49
1189 2361 2.285977 GTCCTTCAGGTGAAAACGTGT 58.714 47.619 0.00 0.00 36.34 4.49
1190 2362 2.681344 GTCCTTCAGGTGAAAACGTGTT 59.319 45.455 0.00 0.00 36.34 3.32
1192 2364 2.943033 CCTTCAGGTGAAAACGTGTTCT 59.057 45.455 18.98 0.00 33.07 3.01
1193 2365 3.242739 CCTTCAGGTGAAAACGTGTTCTG 60.243 47.826 18.98 9.58 33.07 3.02
1194 2366 3.254470 TCAGGTGAAAACGTGTTCTGA 57.746 42.857 18.98 11.68 0.00 3.27
1197 2369 3.559655 CAGGTGAAAACGTGTTCTGATCA 59.440 43.478 18.98 0.00 0.00 2.92
1200 2372 5.639506 AGGTGAAAACGTGTTCTGATCATAG 59.360 40.000 18.98 0.00 0.00 2.23
1201 2373 5.637810 GGTGAAAACGTGTTCTGATCATAGA 59.362 40.000 18.98 0.00 0.00 1.98
1202 2374 6.313905 GGTGAAAACGTGTTCTGATCATAGAT 59.686 38.462 18.98 0.00 0.00 1.98
1204 2376 7.900352 GTGAAAACGTGTTCTGATCATAGATTC 59.100 37.037 18.98 0.00 0.00 2.52
1205 2377 7.602265 TGAAAACGTGTTCTGATCATAGATTCA 59.398 33.333 18.98 0.00 0.00 2.57
1206 2378 7.531280 AAACGTGTTCTGATCATAGATTCAG 57.469 36.000 0.00 0.00 40.58 3.02
1207 2379 5.046529 ACGTGTTCTGATCATAGATTCAGC 58.953 41.667 0.00 0.00 39.36 4.26
1208 2380 5.045872 CGTGTTCTGATCATAGATTCAGCA 58.954 41.667 0.00 0.00 39.36 4.41
1210 2382 6.509199 CGTGTTCTGATCATAGATTCAGCAAC 60.509 42.308 0.00 0.00 39.36 4.17
1211 2383 6.538021 GTGTTCTGATCATAGATTCAGCAACT 59.462 38.462 0.00 0.00 39.36 3.16
1212 2384 7.065563 GTGTTCTGATCATAGATTCAGCAACTT 59.934 37.037 0.00 0.00 39.36 2.66
1215 2387 5.993055 TGATCATAGATTCAGCAACTTCCA 58.007 37.500 0.00 0.00 0.00 3.53
1216 2388 5.819379 TGATCATAGATTCAGCAACTTCCAC 59.181 40.000 0.00 0.00 0.00 4.02
1217 2389 5.164620 TCATAGATTCAGCAACTTCCACA 57.835 39.130 0.00 0.00 0.00 4.17
1219 2391 5.645067 TCATAGATTCAGCAACTTCCACAAG 59.355 40.000 0.00 0.00 35.50 3.16
1228 2408 3.769536 CAACTTCCACAAGAACCACAAC 58.230 45.455 0.00 0.00 33.34 3.32
1256 2459 7.901029 TCATAAGAAATGTTTGTGCCCATAAA 58.099 30.769 0.00 0.00 0.00 1.40
1390 2593 0.045469 AGCTGGGGAGAGGAGGATTT 59.955 55.000 0.00 0.00 0.00 2.17
1402 2605 2.100197 GGAGGATTTGGCCCTGTTTAC 58.900 52.381 0.00 0.00 33.36 2.01
1440 2673 6.849085 TTTTAATCCCAGCAATCTTAGCAA 57.151 33.333 0.00 0.00 0.00 3.91
1441 2674 6.455360 TTTAATCCCAGCAATCTTAGCAAG 57.545 37.500 0.00 0.00 0.00 4.01
1456 2689 7.658179 TCTTAGCAAGATAGTGTTCAGTTTG 57.342 36.000 0.00 0.00 31.20 2.93
1457 2690 7.217200 TCTTAGCAAGATAGTGTTCAGTTTGT 58.783 34.615 0.00 0.00 31.20 2.83
1458 2691 8.364894 TCTTAGCAAGATAGTGTTCAGTTTGTA 58.635 33.333 0.00 0.00 31.20 2.41
1459 2692 8.534333 TTAGCAAGATAGTGTTCAGTTTGTAG 57.466 34.615 0.00 0.00 0.00 2.74
1460 2693 6.525629 AGCAAGATAGTGTTCAGTTTGTAGT 58.474 36.000 0.00 0.00 0.00 2.73
1461 2694 7.667557 AGCAAGATAGTGTTCAGTTTGTAGTA 58.332 34.615 0.00 0.00 0.00 1.82
1462 2695 7.815068 AGCAAGATAGTGTTCAGTTTGTAGTAG 59.185 37.037 0.00 0.00 0.00 2.57
1463 2696 7.412020 GCAAGATAGTGTTCAGTTTGTAGTAGC 60.412 40.741 0.00 0.00 0.00 3.58
1464 2697 7.228314 AGATAGTGTTCAGTTTGTAGTAGCA 57.772 36.000 0.00 0.00 0.00 3.49
1465 2698 7.091443 AGATAGTGTTCAGTTTGTAGTAGCAC 58.909 38.462 0.00 0.00 0.00 4.40
1466 2699 4.049186 AGTGTTCAGTTTGTAGTAGCACG 58.951 43.478 0.00 0.00 0.00 5.34
1467 2700 4.046462 GTGTTCAGTTTGTAGTAGCACGA 58.954 43.478 0.00 0.00 0.00 4.35
1468 2701 4.684703 GTGTTCAGTTTGTAGTAGCACGAT 59.315 41.667 0.00 0.00 0.00 3.73
1481 2714 0.166814 GCACGATTGAACAGAGGTGC 59.833 55.000 0.00 0.00 43.07 5.01
1496 2729 3.937706 AGAGGTGCTCTGAATTTTGATCG 59.062 43.478 0.00 0.00 39.62 3.69
1497 2730 3.935203 GAGGTGCTCTGAATTTTGATCGA 59.065 43.478 0.00 0.00 0.00 3.59
1498 2731 3.686726 AGGTGCTCTGAATTTTGATCGAC 59.313 43.478 0.00 0.00 0.00 4.20
1499 2732 3.181506 GGTGCTCTGAATTTTGATCGACC 60.182 47.826 0.00 0.00 0.00 4.79
1513 2746 2.759795 GACCTGCAGGGGAAGCTT 59.240 61.111 35.42 13.88 40.27 3.74
1522 2755 2.434359 GGGAAGCTTGACGACGGG 60.434 66.667 2.10 0.00 0.00 5.28
1523 2756 2.654877 GGAAGCTTGACGACGGGA 59.345 61.111 2.10 0.00 0.00 5.14
1582 2815 2.657237 CAGGGCGAGTCGGAGTTT 59.343 61.111 15.52 0.00 0.00 2.66
1990 3223 4.421952 GCTTAGCTAGCCGGTGAC 57.578 61.111 12.13 0.00 44.48 3.67
2026 3259 0.592148 GTACCTACCTCTGATCGCCG 59.408 60.000 0.00 0.00 0.00 6.46
2201 3441 1.296715 CCTCAACCTCCCCAACGAG 59.703 63.158 0.00 0.00 0.00 4.18
2288 3540 4.692625 TGCTCTGCTCTGAACTTTTATGTC 59.307 41.667 0.00 0.00 0.00 3.06
2293 3545 8.225603 TCTGCTCTGAACTTTTATGTCTTTTT 57.774 30.769 0.00 0.00 0.00 1.94
2303 3555 6.863126 ACTTTTATGTCTTTTTCATTCAGGCG 59.137 34.615 0.00 0.00 0.00 5.52
2674 3926 3.544684 ACATGAGCTTCGGCAAATGATA 58.455 40.909 0.00 0.00 44.74 2.15
2675 3927 4.139786 ACATGAGCTTCGGCAAATGATAT 58.860 39.130 0.00 0.00 44.74 1.63
2676 3928 4.023450 ACATGAGCTTCGGCAAATGATATG 60.023 41.667 0.00 0.00 44.74 1.78
2677 3929 3.807553 TGAGCTTCGGCAAATGATATGA 58.192 40.909 0.00 0.00 44.74 2.15
2678 3930 4.392047 TGAGCTTCGGCAAATGATATGAT 58.608 39.130 0.00 0.00 44.74 2.45
2679 3931 4.453478 TGAGCTTCGGCAAATGATATGATC 59.547 41.667 0.00 0.00 44.74 2.92
2680 3932 3.755378 AGCTTCGGCAAATGATATGATCC 59.245 43.478 0.00 0.00 44.74 3.36
2681 3933 3.503363 GCTTCGGCAAATGATATGATCCA 59.497 43.478 0.00 0.00 41.33 3.41
2682 3934 4.157289 GCTTCGGCAAATGATATGATCCAT 59.843 41.667 0.00 0.00 41.33 3.41
2683 3935 5.632244 TTCGGCAAATGATATGATCCATG 57.368 39.130 0.00 0.00 0.00 3.66
2684 3936 4.011698 TCGGCAAATGATATGATCCATGG 58.988 43.478 4.97 4.97 0.00 3.66
2685 3937 3.428452 CGGCAAATGATATGATCCATGGC 60.428 47.826 6.96 0.00 0.00 4.40
2737 3996 2.965147 TGACCGATGATTCCATGCTAGA 59.035 45.455 0.00 0.00 32.09 2.43
2785 4044 9.274065 GTTTATTTGCCTTTTCTTGTAGATACG 57.726 33.333 0.00 0.00 0.00 3.06
2918 4180 8.759641 CGATTCAGAGAACAATAAAGATGGTAG 58.240 37.037 0.00 0.00 0.00 3.18
2919 4181 9.606631 GATTCAGAGAACAATAAAGATGGTAGT 57.393 33.333 0.00 0.00 0.00 2.73
2957 4219 5.920840 TCTCAAACGTGACTTGATCTAACTG 59.079 40.000 1.83 0.00 32.53 3.16
2960 4222 3.318017 ACGTGACTTGATCTAACTGTGC 58.682 45.455 0.00 0.00 0.00 4.57
2975 4242 0.610174 TGTGCCAGTTCTGCTCTAGG 59.390 55.000 0.00 0.00 0.00 3.02
3008 4275 5.121768 CCCCGTAAGATAAAGTTTGTGACAG 59.878 44.000 0.00 0.00 43.02 3.51
3013 4281 7.855904 CGTAAGATAAAGTTTGTGACAGCTTTT 59.144 33.333 17.60 8.35 43.02 2.27
3079 4347 6.495181 CCTAATCCAGAGCTCAAATACTCCTA 59.505 42.308 17.77 0.00 33.18 2.94
3127 4395 7.746929 TGTAGCAAAACATTGAAAACCTTTTG 58.253 30.769 0.00 0.00 38.03 2.44
3163 4431 7.539034 ACAAACATTGCCTAATTTTCTACCT 57.461 32.000 0.00 0.00 0.00 3.08
3166 4434 5.016173 ACATTGCCTAATTTTCTACCTGCA 58.984 37.500 0.00 0.00 0.00 4.41
3181 4449 7.984422 TCTACCTGCATGTATATTTTCATGG 57.016 36.000 2.10 0.00 40.91 3.66
3198 4466 6.809630 TTCATGGTGAAATGACATTCGTAA 57.190 33.333 0.05 0.00 36.31 3.18
3200 4468 6.841119 TCATGGTGAAATGACATTCGTAAAG 58.159 36.000 0.05 0.00 31.58 1.85
3203 4471 7.447374 TGGTGAAATGACATTCGTAAAGATT 57.553 32.000 0.05 0.00 31.80 2.40
3205 4473 9.004717 TGGTGAAATGACATTCGTAAAGATTTA 57.995 29.630 0.05 0.00 31.80 1.40
3206 4474 9.834628 GGTGAAATGACATTCGTAAAGATTTAA 57.165 29.630 0.05 0.00 31.80 1.52
3299 4568 5.599359 TTTTCTTCACGAAACATCGCATA 57.401 34.783 0.00 0.00 41.13 3.14
3302 4571 4.180817 TCTTCACGAAACATCGCATACAT 58.819 39.130 0.00 0.00 36.44 2.29
3360 4630 0.036765 AGATAAAGCCGCAACCACGA 60.037 50.000 0.00 0.00 34.06 4.35
3363 4633 2.319136 TAAAGCCGCAACCACGATAT 57.681 45.000 0.00 0.00 34.06 1.63
3381 4651 4.549489 CGATATAAAGACAACCGAAACCGC 60.549 45.833 0.00 0.00 0.00 5.68
3399 4671 2.422597 CGCAGGTCCACACAAGAATTA 58.577 47.619 0.00 0.00 0.00 1.40
3400 4672 2.159627 CGCAGGTCCACACAAGAATTAC 59.840 50.000 0.00 0.00 0.00 1.89
3416 4688 7.982354 ACAAGAATTACAGAGGTACATAAGAGC 59.018 37.037 0.00 0.00 0.00 4.09
3417 4689 7.661536 AGAATTACAGAGGTACATAAGAGCA 57.338 36.000 0.00 0.00 0.00 4.26
3418 4690 8.256356 AGAATTACAGAGGTACATAAGAGCAT 57.744 34.615 0.00 0.00 0.00 3.79
3419 4691 8.364142 AGAATTACAGAGGTACATAAGAGCATC 58.636 37.037 0.00 0.00 0.00 3.91
3431 4703 3.364277 GAGCATCTACAACCGGACC 57.636 57.895 9.46 0.00 0.00 4.46
3432 4704 0.824759 GAGCATCTACAACCGGACCT 59.175 55.000 9.46 0.00 0.00 3.85
3433 4705 0.824759 AGCATCTACAACCGGACCTC 59.175 55.000 9.46 0.00 0.00 3.85
3434 4706 0.824759 GCATCTACAACCGGACCTCT 59.175 55.000 9.46 0.00 0.00 3.69
3435 4707 1.202428 GCATCTACAACCGGACCTCTC 60.202 57.143 9.46 0.00 0.00 3.20
3436 4708 2.100197 CATCTACAACCGGACCTCTCA 58.900 52.381 9.46 0.00 0.00 3.27
3437 4709 2.297698 TCTACAACCGGACCTCTCAA 57.702 50.000 9.46 0.00 0.00 3.02
3438 4710 2.600790 TCTACAACCGGACCTCTCAAA 58.399 47.619 9.46 0.00 0.00 2.69
3439 4711 2.298163 TCTACAACCGGACCTCTCAAAC 59.702 50.000 9.46 0.00 0.00 2.93
3440 4712 1.129058 ACAACCGGACCTCTCAAACT 58.871 50.000 9.46 0.00 0.00 2.66
3441 4713 1.070289 ACAACCGGACCTCTCAAACTC 59.930 52.381 9.46 0.00 0.00 3.01
3442 4714 1.070134 CAACCGGACCTCTCAAACTCA 59.930 52.381 9.46 0.00 0.00 3.41
3443 4715 1.645710 ACCGGACCTCTCAAACTCAT 58.354 50.000 9.46 0.00 0.00 2.90
3444 4716 1.550976 ACCGGACCTCTCAAACTCATC 59.449 52.381 9.46 0.00 0.00 2.92
3445 4717 1.827969 CCGGACCTCTCAAACTCATCT 59.172 52.381 0.00 0.00 0.00 2.90
3446 4718 2.159170 CCGGACCTCTCAAACTCATCTC 60.159 54.545 0.00 0.00 0.00 2.75
3447 4719 2.493675 CGGACCTCTCAAACTCATCTCA 59.506 50.000 0.00 0.00 0.00 3.27
3448 4720 3.056536 CGGACCTCTCAAACTCATCTCAA 60.057 47.826 0.00 0.00 0.00 3.02
3449 4721 4.561530 CGGACCTCTCAAACTCATCTCAAA 60.562 45.833 0.00 0.00 0.00 2.69
3450 4722 4.693095 GGACCTCTCAAACTCATCTCAAAC 59.307 45.833 0.00 0.00 0.00 2.93
3451 4723 4.310769 ACCTCTCAAACTCATCTCAAACG 58.689 43.478 0.00 0.00 0.00 3.60
3452 4724 3.124297 CCTCTCAAACTCATCTCAAACGC 59.876 47.826 0.00 0.00 0.00 4.84
3453 4725 3.067106 TCTCAAACTCATCTCAAACGCC 58.933 45.455 0.00 0.00 0.00 5.68
3454 4726 2.151202 TCAAACTCATCTCAAACGCCC 58.849 47.619 0.00 0.00 0.00 6.13
3455 4727 1.135972 CAAACTCATCTCAAACGCCCG 60.136 52.381 0.00 0.00 0.00 6.13
3456 4728 0.673644 AACTCATCTCAAACGCCCGG 60.674 55.000 0.00 0.00 0.00 5.73
3457 4729 1.079127 CTCATCTCAAACGCCCGGT 60.079 57.895 0.00 0.00 0.00 5.28
3458 4730 1.079405 TCATCTCAAACGCCCGGTC 60.079 57.895 0.00 0.00 0.00 4.79
3459 4731 1.375396 CATCTCAAACGCCCGGTCA 60.375 57.895 0.00 0.00 0.00 4.02
3460 4732 1.375523 ATCTCAAACGCCCGGTCAC 60.376 57.895 0.00 0.00 0.00 3.67
3461 4733 1.827399 ATCTCAAACGCCCGGTCACT 61.827 55.000 0.00 0.00 0.00 3.41
3462 4734 2.280524 TCAAACGCCCGGTCACTG 60.281 61.111 0.00 0.00 0.00 3.66
3463 4735 2.590575 CAAACGCCCGGTCACTGT 60.591 61.111 0.00 0.00 0.00 3.55
3464 4736 2.280592 AAACGCCCGGTCACTGTC 60.281 61.111 0.00 0.00 0.00 3.51
3465 4737 3.819877 AAACGCCCGGTCACTGTCC 62.820 63.158 0.00 0.00 0.00 4.02
3471 4743 2.049433 CGGTCACTGTCCGGTCAC 60.049 66.667 0.00 0.00 43.68 3.67
3472 4744 2.049433 GGTCACTGTCCGGTCACG 60.049 66.667 0.00 0.00 40.55 4.35
3473 4745 2.558286 GGTCACTGTCCGGTCACGA 61.558 63.158 0.00 0.00 44.60 4.35
3474 4746 1.585006 GTCACTGTCCGGTCACGAT 59.415 57.895 0.00 0.00 44.60 3.73
3475 4747 0.038526 GTCACTGTCCGGTCACGATT 60.039 55.000 0.00 0.00 44.60 3.34
3476 4748 0.677288 TCACTGTCCGGTCACGATTT 59.323 50.000 0.00 0.00 44.60 2.17
3477 4749 1.069513 TCACTGTCCGGTCACGATTTT 59.930 47.619 0.00 0.00 44.60 1.82
3478 4750 1.871039 CACTGTCCGGTCACGATTTTT 59.129 47.619 0.00 0.00 44.60 1.94
3493 4765 3.015516 TTTTTGACCCAGACGAGCC 57.984 52.632 0.00 0.00 0.00 4.70
3494 4766 0.472471 TTTTTGACCCAGACGAGCCT 59.528 50.000 0.00 0.00 0.00 4.58
3495 4767 0.034896 TTTTGACCCAGACGAGCCTC 59.965 55.000 0.00 0.00 0.00 4.70
3496 4768 0.832135 TTTGACCCAGACGAGCCTCT 60.832 55.000 0.00 0.00 0.00 3.69
3497 4769 0.832135 TTGACCCAGACGAGCCTCTT 60.832 55.000 0.00 0.00 0.00 2.85
3498 4770 0.039180 TGACCCAGACGAGCCTCTTA 59.961 55.000 0.00 0.00 0.00 2.10
3499 4771 1.183549 GACCCAGACGAGCCTCTTAA 58.816 55.000 0.00 0.00 0.00 1.85
3500 4772 1.549170 GACCCAGACGAGCCTCTTAAA 59.451 52.381 0.00 0.00 0.00 1.52
3501 4773 1.275573 ACCCAGACGAGCCTCTTAAAC 59.724 52.381 0.00 0.00 0.00 2.01
3502 4774 1.630148 CCAGACGAGCCTCTTAAACG 58.370 55.000 0.00 0.00 0.00 3.60
3503 4775 1.630148 CAGACGAGCCTCTTAAACGG 58.370 55.000 0.00 0.00 0.00 4.44
3504 4776 0.108756 AGACGAGCCTCTTAAACGGC 60.109 55.000 6.58 6.58 46.65 5.68
3508 4780 4.220413 GCCTCTTAAACGGCCCTC 57.780 61.111 0.00 0.00 40.43 4.30
3509 4781 1.298667 GCCTCTTAAACGGCCCTCA 59.701 57.895 0.00 0.00 40.43 3.86
3510 4782 0.322187 GCCTCTTAAACGGCCCTCAA 60.322 55.000 0.00 0.00 40.43 3.02
3511 4783 1.884928 GCCTCTTAAACGGCCCTCAAA 60.885 52.381 0.00 0.00 40.43 2.69
3512 4784 1.810755 CCTCTTAAACGGCCCTCAAAC 59.189 52.381 0.00 0.00 0.00 2.93
3513 4785 1.463444 CTCTTAAACGGCCCTCAAACG 59.537 52.381 0.00 0.00 0.00 3.60
3514 4786 0.109919 CTTAAACGGCCCTCAAACGC 60.110 55.000 0.00 0.00 0.00 4.84
3515 4787 1.517210 TTAAACGGCCCTCAAACGCC 61.517 55.000 0.00 0.00 42.05 5.68
3521 4793 4.016706 CCCTCAAACGCCCGGTCT 62.017 66.667 0.00 0.00 0.00 3.85
3522 4794 2.742372 CCTCAAACGCCCGGTCTG 60.742 66.667 0.00 0.00 0.00 3.51
3523 4795 2.342279 CTCAAACGCCCGGTCTGA 59.658 61.111 0.00 0.00 0.00 3.27
3524 4796 2.027625 CTCAAACGCCCGGTCTGAC 61.028 63.158 0.00 0.00 0.00 3.51
3525 4797 3.411351 CAAACGCCCGGTCTGACG 61.411 66.667 0.00 0.00 0.00 4.35
3526 4798 3.608662 AAACGCCCGGTCTGACGA 61.609 61.111 0.00 0.00 35.47 4.20
3527 4799 3.853597 AAACGCCCGGTCTGACGAC 62.854 63.158 0.00 0.00 39.49 4.34
3530 4802 4.736896 GCCCGGTCTGACGACACC 62.737 72.222 0.00 0.00 42.05 4.16
3531 4803 4.065281 CCCGGTCTGACGACACCC 62.065 72.222 0.00 0.00 42.05 4.61
3532 4804 4.065281 CCGGTCTGACGACACCCC 62.065 72.222 1.07 0.00 42.05 4.95
3533 4805 4.065281 CGGTCTGACGACACCCCC 62.065 72.222 1.07 0.00 42.05 5.40
3547 4819 3.686647 CCCCCATATCCAGCCCAA 58.313 61.111 0.00 0.00 0.00 4.12
3548 4820 1.937541 CCCCCATATCCAGCCCAAA 59.062 57.895 0.00 0.00 0.00 3.28
3549 4821 0.488668 CCCCCATATCCAGCCCAAAT 59.511 55.000 0.00 0.00 0.00 2.32
3550 4822 1.715931 CCCCCATATCCAGCCCAAATA 59.284 52.381 0.00 0.00 0.00 1.40
3551 4823 2.315763 CCCCCATATCCAGCCCAAATAT 59.684 50.000 0.00 0.00 0.00 1.28
3552 4824 3.368248 CCCCATATCCAGCCCAAATATG 58.632 50.000 0.00 0.00 34.55 1.78
3553 4825 3.368248 CCCATATCCAGCCCAAATATGG 58.632 50.000 11.86 11.86 46.37 2.74
3561 4833 4.997884 CCAAATATGGGGCGGACA 57.002 55.556 0.00 0.00 43.51 4.02
3562 4834 3.437642 CCAAATATGGGGCGGACAT 57.562 52.632 0.00 0.00 43.51 3.06
3563 4835 0.961019 CCAAATATGGGGCGGACATG 59.039 55.000 0.00 0.00 43.51 3.21
3564 4836 0.961019 CAAATATGGGGCGGACATGG 59.039 55.000 0.00 0.00 0.00 3.66
3565 4837 0.178964 AAATATGGGGCGGACATGGG 60.179 55.000 0.00 0.00 0.00 4.00
3566 4838 2.080336 AATATGGGGCGGACATGGGG 62.080 60.000 0.00 0.00 0.00 4.96
3593 4865 4.758251 CACGCCCGCCACATCAGA 62.758 66.667 0.00 0.00 0.00 3.27
3594 4866 4.760047 ACGCCCGCCACATCAGAC 62.760 66.667 0.00 0.00 0.00 3.51
3597 4869 4.838152 CCCGCCACATCAGACCCG 62.838 72.222 0.00 0.00 0.00 5.28
3598 4870 3.770040 CCGCCACATCAGACCCGA 61.770 66.667 0.00 0.00 0.00 5.14
3599 4871 2.509336 CGCCACATCAGACCCGAC 60.509 66.667 0.00 0.00 0.00 4.79
3600 4872 2.662596 GCCACATCAGACCCGACA 59.337 61.111 0.00 0.00 0.00 4.35
3601 4873 1.448540 GCCACATCAGACCCGACAG 60.449 63.158 0.00 0.00 0.00 3.51
3602 4874 1.448540 CCACATCAGACCCGACAGC 60.449 63.158 0.00 0.00 0.00 4.40
3603 4875 1.448540 CACATCAGACCCGACAGCC 60.449 63.158 0.00 0.00 0.00 4.85
3604 4876 2.187946 CATCAGACCCGACAGCCC 59.812 66.667 0.00 0.00 0.00 5.19
3605 4877 3.461773 ATCAGACCCGACAGCCCG 61.462 66.667 0.00 0.00 0.00 6.13
3606 4878 3.957435 ATCAGACCCGACAGCCCGA 62.957 63.158 0.00 0.00 0.00 5.14
3607 4879 4.436998 CAGACCCGACAGCCCGAC 62.437 72.222 0.00 0.00 0.00 4.79
3619 4891 3.668142 CCCGACCCCACCCCAAAT 61.668 66.667 0.00 0.00 0.00 2.32
3620 4892 2.443324 CCGACCCCACCCCAAATT 59.557 61.111 0.00 0.00 0.00 1.82
3621 4893 1.981853 CCGACCCCACCCCAAATTG 60.982 63.158 0.00 0.00 0.00 2.32
3622 4894 2.645192 CGACCCCACCCCAAATTGC 61.645 63.158 0.00 0.00 0.00 3.56
3623 4895 1.535202 GACCCCACCCCAAATTGCA 60.535 57.895 0.00 0.00 0.00 4.08
3624 4896 1.826340 GACCCCACCCCAAATTGCAC 61.826 60.000 0.00 0.00 0.00 4.57
3625 4897 2.592032 CCCCACCCCAAATTGCACC 61.592 63.158 0.00 0.00 0.00 5.01
3626 4898 1.840650 CCCACCCCAAATTGCACCA 60.841 57.895 0.00 0.00 0.00 4.17
3627 4899 1.414061 CCCACCCCAAATTGCACCAA 61.414 55.000 0.00 0.00 0.00 3.67
3628 4900 0.471617 CCACCCCAAATTGCACCAAA 59.528 50.000 0.00 0.00 0.00 3.28
3629 4901 1.073603 CCACCCCAAATTGCACCAAAT 59.926 47.619 0.00 0.00 0.00 2.32
3630 4902 2.425539 CACCCCAAATTGCACCAAATC 58.574 47.619 0.00 0.00 0.00 2.17
3631 4903 1.350684 ACCCCAAATTGCACCAAATCC 59.649 47.619 0.00 0.00 0.00 3.01
3632 4904 1.350351 CCCCAAATTGCACCAAATCCA 59.650 47.619 0.00 0.00 0.00 3.41
3633 4905 2.026075 CCCCAAATTGCACCAAATCCAT 60.026 45.455 0.00 0.00 0.00 3.41
3634 4906 3.272581 CCCAAATTGCACCAAATCCATC 58.727 45.455 0.00 0.00 0.00 3.51
3635 4907 3.307550 CCCAAATTGCACCAAATCCATCA 60.308 43.478 0.00 0.00 0.00 3.07
3636 4908 4.325119 CCAAATTGCACCAAATCCATCAA 58.675 39.130 0.00 0.00 0.00 2.57
3637 4909 4.760715 CCAAATTGCACCAAATCCATCAAA 59.239 37.500 0.00 0.00 0.00 2.69
3638 4910 5.335035 CCAAATTGCACCAAATCCATCAAAC 60.335 40.000 0.00 0.00 0.00 2.93
3639 4911 3.399440 TTGCACCAAATCCATCAAACC 57.601 42.857 0.00 0.00 0.00 3.27
3640 4912 1.622811 TGCACCAAATCCATCAAACCC 59.377 47.619 0.00 0.00 0.00 4.11
3641 4913 1.901833 GCACCAAATCCATCAAACCCT 59.098 47.619 0.00 0.00 0.00 4.34
3642 4914 2.302733 GCACCAAATCCATCAAACCCTT 59.697 45.455 0.00 0.00 0.00 3.95
3643 4915 3.617288 GCACCAAATCCATCAAACCCTTC 60.617 47.826 0.00 0.00 0.00 3.46
3644 4916 3.055891 CACCAAATCCATCAAACCCTTCC 60.056 47.826 0.00 0.00 0.00 3.46
3645 4917 3.181407 ACCAAATCCATCAAACCCTTCCT 60.181 43.478 0.00 0.00 0.00 3.36
3646 4918 3.448660 CCAAATCCATCAAACCCTTCCTC 59.551 47.826 0.00 0.00 0.00 3.71
3647 4919 3.388552 AATCCATCAAACCCTTCCTCC 57.611 47.619 0.00 0.00 0.00 4.30
3648 4920 2.059756 TCCATCAAACCCTTCCTCCT 57.940 50.000 0.00 0.00 0.00 3.69
3649 4921 1.916181 TCCATCAAACCCTTCCTCCTC 59.084 52.381 0.00 0.00 0.00 3.71
3650 4922 1.064389 CCATCAAACCCTTCCTCCTCC 60.064 57.143 0.00 0.00 0.00 4.30
3651 4923 1.918957 CATCAAACCCTTCCTCCTCCT 59.081 52.381 0.00 0.00 0.00 3.69
3652 4924 1.657804 TCAAACCCTTCCTCCTCCTC 58.342 55.000 0.00 0.00 0.00 3.71
3653 4925 0.621082 CAAACCCTTCCTCCTCCTCC 59.379 60.000 0.00 0.00 0.00 4.30
3654 4926 0.550393 AAACCCTTCCTCCTCCTCCC 60.550 60.000 0.00 0.00 0.00 4.30
3655 4927 2.444895 CCCTTCCTCCTCCTCCCG 60.445 72.222 0.00 0.00 0.00 5.14
3656 4928 2.364961 CCTTCCTCCTCCTCCCGT 59.635 66.667 0.00 0.00 0.00 5.28
3657 4929 1.758906 CCTTCCTCCTCCTCCCGTC 60.759 68.421 0.00 0.00 0.00 4.79
3658 4930 2.044252 TTCCTCCTCCTCCCGTCG 60.044 66.667 0.00 0.00 0.00 5.12
3659 4931 4.816984 TCCTCCTCCTCCCGTCGC 62.817 72.222 0.00 0.00 0.00 5.19
3667 4939 4.452733 CTCCCGTCGCCCTCCAAC 62.453 72.222 0.00 0.00 0.00 3.77
3670 4942 4.096003 CCGTCGCCCTCCAACCAT 62.096 66.667 0.00 0.00 0.00 3.55
3671 4943 2.046314 CGTCGCCCTCCAACCATT 60.046 61.111 0.00 0.00 0.00 3.16
3672 4944 2.106683 CGTCGCCCTCCAACCATTC 61.107 63.158 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.212004 GCCATTGGAGCTTTTCTTTTTCAC 59.788 41.667 6.95 0.00 0.00 3.18
1 2 4.101430 AGCCATTGGAGCTTTTCTTTTTCA 59.899 37.500 6.95 0.00 37.24 2.69
2 3 4.635223 AGCCATTGGAGCTTTTCTTTTTC 58.365 39.130 6.95 0.00 37.24 2.29
7 8 3.703052 CCATTAGCCATTGGAGCTTTTCT 59.297 43.478 6.95 0.00 41.83 2.52
30 32 0.808125 TTTCCCAATCAACGATGGCG 59.192 50.000 0.00 0.00 44.79 5.69
63 65 1.645402 ATCCCCAATTCCCCGTCAGG 61.645 60.000 0.00 0.00 37.24 3.86
65 67 1.827792 ATATCCCCAATTCCCCGTCA 58.172 50.000 0.00 0.00 0.00 4.35
74 76 1.780309 TCGGGCTGAAATATCCCCAAT 59.220 47.619 0.00 0.00 37.36 3.16
230 1365 3.749064 GGCGACGAGGAGCTGTCA 61.749 66.667 0.00 0.00 34.78 3.58
672 1816 1.407258 GTAGCTGCTCAGATCCTTCGT 59.593 52.381 4.91 0.00 0.00 3.85
686 1830 0.380733 TCGTGCATACCTCGTAGCTG 59.619 55.000 0.00 0.00 0.00 4.24
687 1831 0.381089 GTCGTGCATACCTCGTAGCT 59.619 55.000 0.00 0.00 0.00 3.32
688 1832 0.928908 CGTCGTGCATACCTCGTAGC 60.929 60.000 0.00 0.00 0.00 3.58
724 1870 5.515626 GTGTTACTACTATACACAGCTGCAC 59.484 44.000 15.27 4.61 41.30 4.57
745 1913 8.352942 GGACTTTGTAAAATTCAGAAGATGTGT 58.647 33.333 0.00 0.00 0.00 3.72
746 1914 8.352201 TGGACTTTGTAAAATTCAGAAGATGTG 58.648 33.333 0.00 0.00 0.00 3.21
751 1920 9.237846 GAGTTTGGACTTTGTAAAATTCAGAAG 57.762 33.333 0.00 0.00 35.88 2.85
769 1938 6.440647 ACTGACTTGTATCATAGGAGTTTGGA 59.559 38.462 0.00 0.00 0.00 3.53
794 1966 6.597562 AGTACAGGGTAAATCACAAGACAAA 58.402 36.000 0.00 0.00 0.00 2.83
795 1967 6.182507 AGTACAGGGTAAATCACAAGACAA 57.817 37.500 0.00 0.00 0.00 3.18
796 1968 5.818678 AGTACAGGGTAAATCACAAGACA 57.181 39.130 0.00 0.00 0.00 3.41
797 1969 6.465084 AGAAGTACAGGGTAAATCACAAGAC 58.535 40.000 0.00 0.00 0.00 3.01
798 1970 6.681729 AGAAGTACAGGGTAAATCACAAGA 57.318 37.500 0.00 0.00 0.00 3.02
809 1981 4.315803 CAAACGATGAAGAAGTACAGGGT 58.684 43.478 0.00 0.00 0.00 4.34
810 1982 3.125316 GCAAACGATGAAGAAGTACAGGG 59.875 47.826 0.00 0.00 0.00 4.45
845 2017 4.194497 TGGTGGGTGGGAGTGGGA 62.194 66.667 0.00 0.00 0.00 4.37
846 2018 3.966543 GTGGTGGGTGGGAGTGGG 61.967 72.222 0.00 0.00 0.00 4.61
849 2021 3.175710 GTGGTGGTGGGTGGGAGT 61.176 66.667 0.00 0.00 0.00 3.85
851 2023 4.845307 TGGTGGTGGTGGGTGGGA 62.845 66.667 0.00 0.00 0.00 4.37
852 2024 4.596585 GTGGTGGTGGTGGGTGGG 62.597 72.222 0.00 0.00 0.00 4.61
853 2025 3.814906 TGTGGTGGTGGTGGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
854 2026 2.518349 GTGTGGTGGTGGTGGGTG 60.518 66.667 0.00 0.00 0.00 4.61
855 2027 3.018193 TGTGTGGTGGTGGTGGGT 61.018 61.111 0.00 0.00 0.00 4.51
856 2028 2.518349 GTGTGTGGTGGTGGTGGG 60.518 66.667 0.00 0.00 0.00 4.61
857 2029 2.118404 GTGTGTGTGGTGGTGGTGG 61.118 63.158 0.00 0.00 0.00 4.61
858 2030 1.377856 TGTGTGTGTGGTGGTGGTG 60.378 57.895 0.00 0.00 0.00 4.17
859 2031 1.377987 GTGTGTGTGTGGTGGTGGT 60.378 57.895 0.00 0.00 0.00 4.16
860 2032 1.377856 TGTGTGTGTGTGGTGGTGG 60.378 57.895 0.00 0.00 0.00 4.61
861 2033 0.957888 TGTGTGTGTGTGTGGTGGTG 60.958 55.000 0.00 0.00 0.00 4.17
862 2034 0.034574 ATGTGTGTGTGTGTGGTGGT 60.035 50.000 0.00 0.00 0.00 4.16
863 2035 1.102154 AATGTGTGTGTGTGTGGTGG 58.898 50.000 0.00 0.00 0.00 4.61
864 2036 3.314913 ACATAATGTGTGTGTGTGTGGTG 59.685 43.478 0.00 0.00 40.28 4.17
865 2037 3.550820 ACATAATGTGTGTGTGTGTGGT 58.449 40.909 0.00 0.00 40.28 4.16
866 2038 4.566545 AACATAATGTGTGTGTGTGTGG 57.433 40.909 0.00 0.00 41.14 4.17
867 2039 6.135400 CACTAACATAATGTGTGTGTGTGTG 58.865 40.000 7.29 3.51 41.14 3.82
868 2040 5.820423 ACACTAACATAATGTGTGTGTGTGT 59.180 36.000 15.90 13.31 46.59 3.72
869 2041 6.299023 ACACTAACATAATGTGTGTGTGTG 57.701 37.500 15.90 12.85 46.59 3.82
871 2043 6.649141 ACCTACACTAACATAATGTGTGTGTG 59.351 38.462 17.62 16.65 42.82 3.82
872 2044 6.649141 CACCTACACTAACATAATGTGTGTGT 59.351 38.462 14.60 14.60 44.07 3.72
873 2045 6.092122 CCACCTACACTAACATAATGTGTGTG 59.908 42.308 12.41 7.43 43.61 3.82
874 2046 6.014070 TCCACCTACACTAACATAATGTGTGT 60.014 38.462 8.05 9.80 43.61 3.72
875 2047 6.403049 TCCACCTACACTAACATAATGTGTG 58.597 40.000 8.05 5.20 43.61 3.82
876 2048 6.614694 TCCACCTACACTAACATAATGTGT 57.385 37.500 0.00 0.00 45.39 3.72
877 2049 6.420903 CGATCCACCTACACTAACATAATGTG 59.579 42.308 0.00 0.00 37.67 3.21
878 2050 6.322969 TCGATCCACCTACACTAACATAATGT 59.677 38.462 0.00 0.00 0.00 2.71
890 2062 4.020573 ACAAATCAACTCGATCCACCTACA 60.021 41.667 0.00 0.00 31.11 2.74
895 2067 3.074412 ACCACAAATCAACTCGATCCAC 58.926 45.455 0.00 0.00 31.11 4.02
899 2071 3.058016 CAGCAACCACAAATCAACTCGAT 60.058 43.478 0.00 0.00 35.12 3.59
900 2072 2.290367 CAGCAACCACAAATCAACTCGA 59.710 45.455 0.00 0.00 0.00 4.04
935 2107 7.713764 ACATTGGTTTTCTTGAAGTAATTGC 57.286 32.000 0.00 0.00 0.00 3.56
936 2108 9.311916 TGAACATTGGTTTTCTTGAAGTAATTG 57.688 29.630 0.00 0.00 37.36 2.32
1002 2174 1.560860 GCCCGTCTCTGCATATTCGC 61.561 60.000 0.00 0.00 0.00 4.70
1110 2282 0.103937 CGAGGAACCTCCAGCAGATC 59.896 60.000 14.25 0.00 39.61 2.75
1155 2327 1.456705 AGGACATCTCCTCGGCCTC 60.457 63.158 0.00 0.00 44.59 4.70
1183 2355 5.521735 GCTGAATCTATGATCAGAACACGTT 59.478 40.000 0.09 0.00 44.64 3.99
1184 2356 5.046529 GCTGAATCTATGATCAGAACACGT 58.953 41.667 0.09 0.00 44.64 4.49
1185 2357 5.045872 TGCTGAATCTATGATCAGAACACG 58.954 41.667 0.09 0.00 44.64 4.49
1188 2360 7.254727 GGAAGTTGCTGAATCTATGATCAGAAC 60.255 40.741 0.09 7.98 44.64 3.01
1189 2361 6.765036 GGAAGTTGCTGAATCTATGATCAGAA 59.235 38.462 0.09 0.00 44.64 3.02
1190 2362 6.126968 TGGAAGTTGCTGAATCTATGATCAGA 60.127 38.462 0.09 0.00 44.64 3.27
1192 2364 5.819379 GTGGAAGTTGCTGAATCTATGATCA 59.181 40.000 0.00 0.00 0.00 2.92
1193 2365 5.819379 TGTGGAAGTTGCTGAATCTATGATC 59.181 40.000 0.00 0.00 0.00 2.92
1194 2366 5.748402 TGTGGAAGTTGCTGAATCTATGAT 58.252 37.500 0.00 0.00 0.00 2.45
1197 2369 5.809001 TCTTGTGGAAGTTGCTGAATCTAT 58.191 37.500 0.00 0.00 0.00 1.98
1200 2372 4.540824 GTTCTTGTGGAAGTTGCTGAATC 58.459 43.478 0.00 0.00 34.23 2.52
1201 2373 3.319122 GGTTCTTGTGGAAGTTGCTGAAT 59.681 43.478 0.00 0.00 34.23 2.57
1202 2374 2.687935 GGTTCTTGTGGAAGTTGCTGAA 59.312 45.455 0.00 0.00 34.23 3.02
1204 2376 2.023673 TGGTTCTTGTGGAAGTTGCTG 58.976 47.619 0.00 0.00 34.23 4.41
1205 2377 2.024414 GTGGTTCTTGTGGAAGTTGCT 58.976 47.619 0.00 0.00 34.23 3.91
1206 2378 1.748493 TGTGGTTCTTGTGGAAGTTGC 59.252 47.619 0.00 0.00 34.23 4.17
1207 2379 3.443681 AGTTGTGGTTCTTGTGGAAGTTG 59.556 43.478 0.00 0.00 34.23 3.16
1208 2380 3.694566 GAGTTGTGGTTCTTGTGGAAGTT 59.305 43.478 0.00 0.00 34.23 2.66
1210 2382 3.545703 AGAGTTGTGGTTCTTGTGGAAG 58.454 45.455 0.00 0.00 34.23 3.46
1211 2383 3.054728 TGAGAGTTGTGGTTCTTGTGGAA 60.055 43.478 0.00 0.00 0.00 3.53
1212 2384 2.503765 TGAGAGTTGTGGTTCTTGTGGA 59.496 45.455 0.00 0.00 0.00 4.02
1215 2387 6.174720 TCTTATGAGAGTTGTGGTTCTTGT 57.825 37.500 0.00 0.00 0.00 3.16
1216 2388 7.496529 TTTCTTATGAGAGTTGTGGTTCTTG 57.503 36.000 0.00 0.00 32.44 3.02
1217 2389 7.721399 ACATTTCTTATGAGAGTTGTGGTTCTT 59.279 33.333 4.31 0.00 31.53 2.52
1219 2391 7.440523 ACATTTCTTATGAGAGTTGTGGTTC 57.559 36.000 4.31 0.00 31.53 3.62
1228 2408 5.183713 TGGGCACAAACATTTCTTATGAGAG 59.816 40.000 0.00 0.00 32.44 3.20
1390 2593 0.694196 GTACCAGGTAAACAGGGCCA 59.306 55.000 6.18 0.00 0.00 5.36
1402 2605 5.359860 GGGATTAAAATGGAACTGTACCAGG 59.640 44.000 0.00 0.00 40.89 4.45
1411 2614 6.225981 AGATTGCTGGGATTAAAATGGAAC 57.774 37.500 0.00 0.00 0.00 3.62
1440 2673 7.091443 GTGCTACTACAAACTGAACACTATCT 58.909 38.462 0.00 0.00 0.00 1.98
1441 2674 6.033619 CGTGCTACTACAAACTGAACACTATC 59.966 42.308 0.00 0.00 0.00 2.08
1443 2676 5.008911 TCGTGCTACTACAAACTGAACACTA 59.991 40.000 0.00 0.00 0.00 2.74
1444 2677 4.049186 CGTGCTACTACAAACTGAACACT 58.951 43.478 0.00 0.00 0.00 3.55
1445 2678 4.046462 TCGTGCTACTACAAACTGAACAC 58.954 43.478 0.00 0.00 0.00 3.32
1446 2679 4.310357 TCGTGCTACTACAAACTGAACA 57.690 40.909 0.00 0.00 0.00 3.18
1447 2680 5.404366 TCAATCGTGCTACTACAAACTGAAC 59.596 40.000 0.00 0.00 0.00 3.18
1448 2681 5.534407 TCAATCGTGCTACTACAAACTGAA 58.466 37.500 0.00 0.00 0.00 3.02
1449 2682 5.128992 TCAATCGTGCTACTACAAACTGA 57.871 39.130 0.00 0.00 0.00 3.41
1450 2683 5.176774 TGTTCAATCGTGCTACTACAAACTG 59.823 40.000 0.00 0.00 0.00 3.16
1451 2684 5.294356 TGTTCAATCGTGCTACTACAAACT 58.706 37.500 0.00 0.00 0.00 2.66
1452 2685 5.404366 TCTGTTCAATCGTGCTACTACAAAC 59.596 40.000 0.00 0.00 0.00 2.93
1453 2686 5.534407 TCTGTTCAATCGTGCTACTACAAA 58.466 37.500 0.00 0.00 0.00 2.83
1454 2687 5.128992 TCTGTTCAATCGTGCTACTACAA 57.871 39.130 0.00 0.00 0.00 2.41
1455 2688 4.380550 CCTCTGTTCAATCGTGCTACTACA 60.381 45.833 0.00 0.00 0.00 2.74
1456 2689 4.106197 CCTCTGTTCAATCGTGCTACTAC 58.894 47.826 0.00 0.00 0.00 2.73
1457 2690 3.762288 ACCTCTGTTCAATCGTGCTACTA 59.238 43.478 0.00 0.00 0.00 1.82
1458 2691 2.563179 ACCTCTGTTCAATCGTGCTACT 59.437 45.455 0.00 0.00 0.00 2.57
1459 2692 2.668457 CACCTCTGTTCAATCGTGCTAC 59.332 50.000 0.00 0.00 0.00 3.58
1460 2693 2.930887 GCACCTCTGTTCAATCGTGCTA 60.931 50.000 0.00 0.00 42.49 3.49
1461 2694 1.800805 CACCTCTGTTCAATCGTGCT 58.199 50.000 0.00 0.00 0.00 4.40
1462 2695 0.166814 GCACCTCTGTTCAATCGTGC 59.833 55.000 0.00 0.00 39.72 5.34
1463 2696 1.728971 GAGCACCTCTGTTCAATCGTG 59.271 52.381 0.00 0.00 0.00 4.35
1464 2697 1.620819 AGAGCACCTCTGTTCAATCGT 59.379 47.619 0.00 0.00 39.62 3.73
1465 2698 2.376808 AGAGCACCTCTGTTCAATCG 57.623 50.000 0.00 0.00 39.62 3.34
1481 2714 3.686241 TGCAGGTCGATCAAAATTCAGAG 59.314 43.478 0.00 0.00 0.00 3.35
1495 2728 3.259633 AAGCTTCCCCTGCAGGTCG 62.260 63.158 30.63 20.03 0.00 4.79
1496 2729 1.676967 CAAGCTTCCCCTGCAGGTC 60.677 63.158 30.63 13.88 0.00 3.85
1497 2730 2.156098 TCAAGCTTCCCCTGCAGGT 61.156 57.895 30.63 8.87 0.00 4.00
1498 2731 1.676967 GTCAAGCTTCCCCTGCAGG 60.677 63.158 26.87 26.87 0.00 4.85
1499 2732 2.037136 CGTCAAGCTTCCCCTGCAG 61.037 63.158 6.78 6.78 0.00 4.41
1513 2746 1.663739 CACTTTCCTCCCGTCGTCA 59.336 57.895 0.00 0.00 0.00 4.35
1522 2755 1.578206 GCTTCACCGCCACTTTCCTC 61.578 60.000 0.00 0.00 0.00 3.71
1523 2756 1.600916 GCTTCACCGCCACTTTCCT 60.601 57.895 0.00 0.00 0.00 3.36
2007 3240 0.592148 CGGCGATCAGAGGTAGGTAC 59.408 60.000 0.00 0.00 0.00 3.34
2026 3259 0.505655 CAAGAACCGTTTCGTCGTCC 59.494 55.000 0.00 0.00 36.78 4.79
2288 3540 2.095059 CCTCCACGCCTGAATGAAAAAG 60.095 50.000 0.00 0.00 0.00 2.27
2293 3545 2.268920 GCCTCCACGCCTGAATGA 59.731 61.111 0.00 0.00 0.00 2.57
2375 3627 0.107312 CCTGCATCACCTCCTTCTGG 60.107 60.000 0.00 0.00 0.00 3.86
2376 3628 0.617413 ACCTGCATCACCTCCTTCTG 59.383 55.000 0.00 0.00 0.00 3.02
2603 3855 0.753262 AGGGCGTCATCATCCAGTAC 59.247 55.000 0.00 0.00 0.00 2.73
2696 3955 1.371635 AAATTTCACGGTGCTGCGC 60.372 52.632 0.00 0.00 0.00 6.09
2764 4023 5.119588 CGTCGTATCTACAAGAAAAGGCAAA 59.880 40.000 0.00 0.00 0.00 3.68
2805 4064 7.823799 TCGGTATATCGTATACATACTGTTGGA 59.176 37.037 5.11 0.00 34.51 3.53
2823 4082 2.812358 TGCTGAATGCGTCGGTATAT 57.188 45.000 0.00 0.00 46.63 0.86
2851 4110 7.225931 TCACACGTTTATTTCAGAACTAAAGCT 59.774 33.333 6.05 0.00 0.00 3.74
2918 4180 9.355215 TCACGTTTGAGAGAAGAGAAAATATAC 57.645 33.333 0.00 0.00 0.00 1.47
2919 4181 9.355215 GTCACGTTTGAGAGAAGAGAAAATATA 57.645 33.333 0.00 0.00 30.10 0.86
2920 4182 8.091449 AGTCACGTTTGAGAGAAGAGAAAATAT 58.909 33.333 0.00 0.00 30.10 1.28
2957 4219 0.898320 TCCTAGAGCAGAACTGGCAC 59.102 55.000 3.99 0.00 0.00 5.01
2960 4222 5.452636 GGAGTTTATCCTAGAGCAGAACTGG 60.453 48.000 3.99 0.00 45.64 4.00
2975 4242 6.824553 ACTTTATCTTACGGGGGAGTTTATC 58.175 40.000 0.00 0.00 0.00 1.75
3089 4357 6.723282 TGTTTTGCTACATTTTTGGATTTGC 58.277 32.000 0.00 0.00 0.00 3.68
3136 4404 8.520351 GGTAGAAAATTAGGCAATGTTTGTAGT 58.480 33.333 0.00 0.00 0.00 2.73
3137 4405 8.739972 AGGTAGAAAATTAGGCAATGTTTGTAG 58.260 33.333 0.00 0.00 0.00 2.74
3138 4406 8.519526 CAGGTAGAAAATTAGGCAATGTTTGTA 58.480 33.333 0.00 0.00 0.00 2.41
3299 4568 7.714377 TGCCTTTTTCAATAATGTTTCACATGT 59.286 29.630 0.00 0.00 37.97 3.21
3302 4571 7.930325 TGATGCCTTTTTCAATAATGTTTCACA 59.070 29.630 0.00 0.00 0.00 3.58
3325 4594 4.530710 TTATCTATAAAGCGGGCGTGAT 57.469 40.909 0.00 0.00 0.00 3.06
3360 4630 4.255301 TGCGGTTTCGGTTGTCTTTATAT 58.745 39.130 0.00 0.00 36.79 0.86
3363 4633 1.868498 CTGCGGTTTCGGTTGTCTTTA 59.132 47.619 0.00 0.00 36.79 1.85
3381 4651 4.641396 TCTGTAATTCTTGTGTGGACCTG 58.359 43.478 0.00 0.00 0.00 4.00
3399 4671 6.129874 TGTAGATGCTCTTATGTACCTCTGT 58.870 40.000 0.00 0.00 0.00 3.41
3400 4672 6.641169 TGTAGATGCTCTTATGTACCTCTG 57.359 41.667 0.00 0.00 0.00 3.35
3416 4688 2.100197 TGAGAGGTCCGGTTGTAGATG 58.900 52.381 0.00 0.00 0.00 2.90
3417 4689 2.526888 TGAGAGGTCCGGTTGTAGAT 57.473 50.000 0.00 0.00 0.00 1.98
3418 4690 2.297698 TTGAGAGGTCCGGTTGTAGA 57.702 50.000 0.00 0.00 0.00 2.59
3419 4691 2.299297 AGTTTGAGAGGTCCGGTTGTAG 59.701 50.000 0.00 0.00 0.00 2.74
3420 4692 2.298163 GAGTTTGAGAGGTCCGGTTGTA 59.702 50.000 0.00 0.00 0.00 2.41
3421 4693 1.070289 GAGTTTGAGAGGTCCGGTTGT 59.930 52.381 0.00 0.00 0.00 3.32
3422 4694 1.070134 TGAGTTTGAGAGGTCCGGTTG 59.930 52.381 0.00 0.00 0.00 3.77
3423 4695 1.420430 TGAGTTTGAGAGGTCCGGTT 58.580 50.000 0.00 0.00 0.00 4.44
3424 4696 1.550976 GATGAGTTTGAGAGGTCCGGT 59.449 52.381 0.00 0.00 0.00 5.28
3425 4697 1.827969 AGATGAGTTTGAGAGGTCCGG 59.172 52.381 0.00 0.00 0.00 5.14
3426 4698 2.493675 TGAGATGAGTTTGAGAGGTCCG 59.506 50.000 0.00 0.00 0.00 4.79
3427 4699 4.543590 TTGAGATGAGTTTGAGAGGTCC 57.456 45.455 0.00 0.00 0.00 4.46
3428 4700 4.387256 CGTTTGAGATGAGTTTGAGAGGTC 59.613 45.833 0.00 0.00 0.00 3.85
3429 4701 4.310769 CGTTTGAGATGAGTTTGAGAGGT 58.689 43.478 0.00 0.00 0.00 3.85
3430 4702 3.124297 GCGTTTGAGATGAGTTTGAGAGG 59.876 47.826 0.00 0.00 0.00 3.69
3431 4703 3.124297 GGCGTTTGAGATGAGTTTGAGAG 59.876 47.826 0.00 0.00 0.00 3.20
3432 4704 3.067106 GGCGTTTGAGATGAGTTTGAGA 58.933 45.455 0.00 0.00 0.00 3.27
3433 4705 2.160417 GGGCGTTTGAGATGAGTTTGAG 59.840 50.000 0.00 0.00 0.00 3.02
3434 4706 2.151202 GGGCGTTTGAGATGAGTTTGA 58.849 47.619 0.00 0.00 0.00 2.69
3435 4707 1.135972 CGGGCGTTTGAGATGAGTTTG 60.136 52.381 0.00 0.00 0.00 2.93
3436 4708 1.156736 CGGGCGTTTGAGATGAGTTT 58.843 50.000 0.00 0.00 0.00 2.66
3437 4709 0.673644 CCGGGCGTTTGAGATGAGTT 60.674 55.000 0.00 0.00 0.00 3.01
3438 4710 1.079127 CCGGGCGTTTGAGATGAGT 60.079 57.895 0.00 0.00 0.00 3.41
3439 4711 1.079127 ACCGGGCGTTTGAGATGAG 60.079 57.895 6.32 0.00 0.00 2.90
3440 4712 1.079405 GACCGGGCGTTTGAGATGA 60.079 57.895 6.32 0.00 0.00 2.92
3441 4713 1.375396 TGACCGGGCGTTTGAGATG 60.375 57.895 6.32 0.00 0.00 2.90
3442 4714 1.375523 GTGACCGGGCGTTTGAGAT 60.376 57.895 6.32 0.00 0.00 2.75
3443 4715 2.029964 GTGACCGGGCGTTTGAGA 59.970 61.111 6.32 0.00 0.00 3.27
3444 4716 2.030562 AGTGACCGGGCGTTTGAG 59.969 61.111 6.32 0.00 0.00 3.02
3445 4717 2.280524 CAGTGACCGGGCGTTTGA 60.281 61.111 6.32 0.00 0.00 2.69
3446 4718 2.590575 ACAGTGACCGGGCGTTTG 60.591 61.111 6.32 5.01 0.00 2.93
3447 4719 2.280592 GACAGTGACCGGGCGTTT 60.281 61.111 6.32 0.00 0.00 3.60
3448 4720 4.309950 GGACAGTGACCGGGCGTT 62.310 66.667 6.32 0.00 0.00 4.84
3455 4727 1.874345 ATCGTGACCGGACAGTGACC 61.874 60.000 9.46 0.00 33.95 4.02
3456 4728 0.038526 AATCGTGACCGGACAGTGAC 60.039 55.000 9.46 0.00 33.95 3.67
3457 4729 0.677288 AAATCGTGACCGGACAGTGA 59.323 50.000 9.46 10.06 33.95 3.41
3458 4730 1.508632 AAAATCGTGACCGGACAGTG 58.491 50.000 9.46 3.79 33.95 3.66
3459 4731 2.249844 AAAAATCGTGACCGGACAGT 57.750 45.000 9.46 0.00 33.95 3.55
3475 4747 0.472471 AGGCTCGTCTGGGTCAAAAA 59.528 50.000 0.00 0.00 0.00 1.94
3476 4748 0.034896 GAGGCTCGTCTGGGTCAAAA 59.965 55.000 0.00 0.00 0.00 2.44
3477 4749 0.832135 AGAGGCTCGTCTGGGTCAAA 60.832 55.000 9.22 0.00 0.00 2.69
3478 4750 0.832135 AAGAGGCTCGTCTGGGTCAA 60.832 55.000 9.22 0.00 0.00 3.18
3479 4751 0.039180 TAAGAGGCTCGTCTGGGTCA 59.961 55.000 6.13 0.00 0.00 4.02
3480 4752 1.183549 TTAAGAGGCTCGTCTGGGTC 58.816 55.000 6.13 0.00 0.00 4.46
3481 4753 1.275573 GTTTAAGAGGCTCGTCTGGGT 59.724 52.381 6.13 0.00 0.00 4.51
3482 4754 1.736032 CGTTTAAGAGGCTCGTCTGGG 60.736 57.143 6.13 0.00 0.00 4.45
3483 4755 1.630148 CGTTTAAGAGGCTCGTCTGG 58.370 55.000 6.13 0.00 0.00 3.86
3484 4756 1.630148 CCGTTTAAGAGGCTCGTCTG 58.370 55.000 6.13 0.00 0.00 3.51
3492 4764 1.810755 GTTTGAGGGCCGTTTAAGAGG 59.189 52.381 0.00 0.00 0.00 3.69
3493 4765 1.463444 CGTTTGAGGGCCGTTTAAGAG 59.537 52.381 0.00 0.00 0.00 2.85
3494 4766 1.515081 CGTTTGAGGGCCGTTTAAGA 58.485 50.000 0.00 0.00 0.00 2.10
3495 4767 0.109919 GCGTTTGAGGGCCGTTTAAG 60.110 55.000 0.00 0.00 0.00 1.85
3496 4768 1.517210 GGCGTTTGAGGGCCGTTTAA 61.517 55.000 0.00 0.00 39.93 1.52
3497 4769 1.967494 GGCGTTTGAGGGCCGTTTA 60.967 57.895 0.00 0.00 39.93 2.01
3498 4770 3.292159 GGCGTTTGAGGGCCGTTT 61.292 61.111 0.00 0.00 39.93 3.60
3504 4776 4.016706 AGACCGGGCGTTTGAGGG 62.017 66.667 6.32 0.00 0.00 4.30
3505 4777 2.742372 CAGACCGGGCGTTTGAGG 60.742 66.667 6.32 0.00 0.00 3.86
3506 4778 2.027625 GTCAGACCGGGCGTTTGAG 61.028 63.158 6.32 0.00 36.34 3.02
3507 4779 2.029964 GTCAGACCGGGCGTTTGA 59.970 61.111 6.32 0.00 33.38 2.69
3508 4780 3.411351 CGTCAGACCGGGCGTTTG 61.411 66.667 6.32 0.00 0.00 2.93
3509 4781 3.608662 TCGTCAGACCGGGCGTTT 61.609 61.111 6.32 0.00 0.00 3.60
3510 4782 4.353437 GTCGTCAGACCGGGCGTT 62.353 66.667 6.32 0.00 41.41 4.84
3513 4785 4.736896 GGTGTCGTCAGACCGGGC 62.737 72.222 6.32 0.52 46.51 6.13
3514 4786 4.065281 GGGTGTCGTCAGACCGGG 62.065 72.222 6.32 0.00 46.51 5.73
3515 4787 4.065281 GGGGTGTCGTCAGACCGG 62.065 72.222 0.00 0.00 46.51 5.28
3516 4788 4.065281 GGGGGTGTCGTCAGACCG 62.065 72.222 0.00 0.00 46.51 4.79
3530 4802 0.488668 ATTTGGGCTGGATATGGGGG 59.511 55.000 0.00 0.00 0.00 5.40
3531 4803 3.368248 CATATTTGGGCTGGATATGGGG 58.632 50.000 0.00 0.00 32.63 4.96
3532 4804 3.368248 CCATATTTGGGCTGGATATGGG 58.632 50.000 17.88 6.92 44.56 4.00
3544 4816 0.961019 CATGTCCGCCCCATATTTGG 59.039 55.000 0.00 0.00 43.23 3.28
3545 4817 0.961019 CCATGTCCGCCCCATATTTG 59.039 55.000 0.00 0.00 0.00 2.32
3546 4818 0.178964 CCCATGTCCGCCCCATATTT 60.179 55.000 0.00 0.00 0.00 1.40
3547 4819 1.460255 CCCATGTCCGCCCCATATT 59.540 57.895 0.00 0.00 0.00 1.28
3548 4820 2.538141 CCCCATGTCCGCCCCATAT 61.538 63.158 0.00 0.00 0.00 1.78
3549 4821 3.174987 CCCCATGTCCGCCCCATA 61.175 66.667 0.00 0.00 0.00 2.74
3576 4848 4.758251 TCTGATGTGGCGGGCGTG 62.758 66.667 0.00 0.00 0.00 5.34
3577 4849 4.760047 GTCTGATGTGGCGGGCGT 62.760 66.667 0.00 0.00 0.00 5.68
3580 4852 4.838152 CGGGTCTGATGTGGCGGG 62.838 72.222 0.00 0.00 0.00 6.13
3581 4853 3.770040 TCGGGTCTGATGTGGCGG 61.770 66.667 0.00 0.00 0.00 6.13
3582 4854 2.509336 GTCGGGTCTGATGTGGCG 60.509 66.667 0.00 0.00 0.00 5.69
3583 4855 1.448540 CTGTCGGGTCTGATGTGGC 60.449 63.158 0.00 0.00 0.00 5.01
3584 4856 1.448540 GCTGTCGGGTCTGATGTGG 60.449 63.158 0.00 0.00 0.00 4.17
3585 4857 1.448540 GGCTGTCGGGTCTGATGTG 60.449 63.158 0.00 0.00 0.00 3.21
3586 4858 2.660064 GGGCTGTCGGGTCTGATGT 61.660 63.158 0.00 0.00 0.00 3.06
3587 4859 2.187946 GGGCTGTCGGGTCTGATG 59.812 66.667 0.00 0.00 0.00 3.07
3588 4860 3.461773 CGGGCTGTCGGGTCTGAT 61.462 66.667 0.00 0.00 0.00 2.90
3589 4861 4.671590 TCGGGCTGTCGGGTCTGA 62.672 66.667 0.00 0.00 0.00 3.27
3590 4862 4.436998 GTCGGGCTGTCGGGTCTG 62.437 72.222 0.00 0.00 0.00 3.51
3602 4874 3.232497 AATTTGGGGTGGGGTCGGG 62.232 63.158 0.00 0.00 0.00 5.14
3603 4875 1.981853 CAATTTGGGGTGGGGTCGG 60.982 63.158 0.00 0.00 0.00 4.79
3604 4876 2.645192 GCAATTTGGGGTGGGGTCG 61.645 63.158 0.00 0.00 0.00 4.79
3605 4877 1.535202 TGCAATTTGGGGTGGGGTC 60.535 57.895 0.00 0.00 0.00 4.46
3606 4878 1.841103 GTGCAATTTGGGGTGGGGT 60.841 57.895 0.00 0.00 0.00 4.95
3607 4879 2.592032 GGTGCAATTTGGGGTGGGG 61.592 63.158 0.00 0.00 0.00 4.96
3608 4880 1.414061 TTGGTGCAATTTGGGGTGGG 61.414 55.000 0.00 0.00 0.00 4.61
3609 4881 0.471617 TTTGGTGCAATTTGGGGTGG 59.528 50.000 0.00 0.00 0.00 4.61
3610 4882 2.425539 GATTTGGTGCAATTTGGGGTG 58.574 47.619 0.00 0.00 0.00 4.61
3611 4883 1.350684 GGATTTGGTGCAATTTGGGGT 59.649 47.619 0.00 0.00 0.00 4.95
3612 4884 1.350351 TGGATTTGGTGCAATTTGGGG 59.650 47.619 0.00 0.00 0.00 4.96
3613 4885 2.855209 TGGATTTGGTGCAATTTGGG 57.145 45.000 0.00 0.00 0.00 4.12
3614 4886 3.940319 TGATGGATTTGGTGCAATTTGG 58.060 40.909 0.00 0.00 0.00 3.28
3615 4887 5.335035 GGTTTGATGGATTTGGTGCAATTTG 60.335 40.000 0.00 0.00 0.00 2.32
3616 4888 4.761227 GGTTTGATGGATTTGGTGCAATTT 59.239 37.500 0.00 0.00 0.00 1.82
3617 4889 4.325972 GGTTTGATGGATTTGGTGCAATT 58.674 39.130 0.00 0.00 0.00 2.32
3618 4890 3.307621 GGGTTTGATGGATTTGGTGCAAT 60.308 43.478 0.00 0.00 0.00 3.56
3619 4891 2.038295 GGGTTTGATGGATTTGGTGCAA 59.962 45.455 0.00 0.00 0.00 4.08
3620 4892 1.622811 GGGTTTGATGGATTTGGTGCA 59.377 47.619 0.00 0.00 0.00 4.57
3621 4893 1.901833 AGGGTTTGATGGATTTGGTGC 59.098 47.619 0.00 0.00 0.00 5.01
3622 4894 3.055891 GGAAGGGTTTGATGGATTTGGTG 60.056 47.826 0.00 0.00 0.00 4.17
3623 4895 3.173151 GGAAGGGTTTGATGGATTTGGT 58.827 45.455 0.00 0.00 0.00 3.67
3624 4896 3.444029 AGGAAGGGTTTGATGGATTTGG 58.556 45.455 0.00 0.00 0.00 3.28
3625 4897 3.448660 GGAGGAAGGGTTTGATGGATTTG 59.551 47.826 0.00 0.00 0.00 2.32
3626 4898 3.337909 AGGAGGAAGGGTTTGATGGATTT 59.662 43.478 0.00 0.00 0.00 2.17
3627 4899 2.929043 AGGAGGAAGGGTTTGATGGATT 59.071 45.455 0.00 0.00 0.00 3.01
3628 4900 2.511637 GAGGAGGAAGGGTTTGATGGAT 59.488 50.000 0.00 0.00 0.00 3.41
3629 4901 1.916181 GAGGAGGAAGGGTTTGATGGA 59.084 52.381 0.00 0.00 0.00 3.41
3630 4902 1.064389 GGAGGAGGAAGGGTTTGATGG 60.064 57.143 0.00 0.00 0.00 3.51
3631 4903 1.918957 AGGAGGAGGAAGGGTTTGATG 59.081 52.381 0.00 0.00 0.00 3.07
3632 4904 2.200955 GAGGAGGAGGAAGGGTTTGAT 58.799 52.381 0.00 0.00 0.00 2.57
3633 4905 1.657804 GAGGAGGAGGAAGGGTTTGA 58.342 55.000 0.00 0.00 0.00 2.69
3634 4906 0.621082 GGAGGAGGAGGAAGGGTTTG 59.379 60.000 0.00 0.00 0.00 2.93
3635 4907 0.550393 GGGAGGAGGAGGAAGGGTTT 60.550 60.000 0.00 0.00 0.00 3.27
3636 4908 1.083141 GGGAGGAGGAGGAAGGGTT 59.917 63.158 0.00 0.00 0.00 4.11
3637 4909 2.788589 GGGAGGAGGAGGAAGGGT 59.211 66.667 0.00 0.00 0.00 4.34
3638 4910 2.444895 CGGGAGGAGGAGGAAGGG 60.445 72.222 0.00 0.00 0.00 3.95
3639 4911 1.758906 GACGGGAGGAGGAGGAAGG 60.759 68.421 0.00 0.00 0.00 3.46
3640 4912 2.122167 CGACGGGAGGAGGAGGAAG 61.122 68.421 0.00 0.00 0.00 3.46
3641 4913 2.044252 CGACGGGAGGAGGAGGAA 60.044 66.667 0.00 0.00 0.00 3.36
3642 4914 4.816984 GCGACGGGAGGAGGAGGA 62.817 72.222 0.00 0.00 0.00 3.71
3650 4922 4.452733 GTTGGAGGGCGACGGGAG 62.453 72.222 0.00 0.00 0.00 4.30
3653 4925 3.622060 AATGGTTGGAGGGCGACGG 62.622 63.158 0.00 0.00 0.00 4.79
3654 4926 2.046314 AATGGTTGGAGGGCGACG 60.046 61.111 0.00 0.00 0.00 5.12
3655 4927 3.905249 GAATGGTTGGAGGGCGAC 58.095 61.111 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.