Multiple sequence alignment - TraesCS2D01G500600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G500600 chr2D 100.000 5715 0 0 1 5715 595160982 595166696 0.000000e+00 10554.0
1 TraesCS2D01G500600 chr2D 89.362 141 15 0 3686 3826 80424428 80424568 1.640000e-40 178.0
2 TraesCS2D01G500600 chr2D 100.000 35 0 0 5106 5140 595166053 595166087 1.330000e-06 65.8
3 TraesCS2D01G500600 chr2D 100.000 35 0 0 5072 5106 595166087 595166121 1.330000e-06 65.8
4 TraesCS2D01G500600 chr2A 88.078 3221 172 93 2 3110 729292662 729295782 0.000000e+00 3626.0
5 TraesCS2D01G500600 chr2A 95.497 533 16 1 4511 5043 729297099 729297623 0.000000e+00 845.0
6 TraesCS2D01G500600 chr2A 88.144 641 47 19 3826 4441 729296452 729297088 0.000000e+00 736.0
7 TraesCS2D01G500600 chr2A 88.028 568 44 14 3116 3674 729295851 729296403 0.000000e+00 651.0
8 TraesCS2D01G500600 chr2A 84.590 305 29 7 5134 5422 729297759 729298061 2.610000e-73 287.0
9 TraesCS2D01G500600 chr2A 91.892 148 12 0 3679 3826 345885421 345885568 2.090000e-49 207.0
10 TraesCS2D01G500600 chr2B 88.094 2990 170 73 210 3097 722629622 722632527 0.000000e+00 3378.0
11 TraesCS2D01G500600 chr2B 85.912 937 45 38 4511 5418 722633823 722634701 0.000000e+00 918.0
12 TraesCS2D01G500600 chr2B 88.819 635 39 15 3826 4441 722633191 722633812 0.000000e+00 750.0
13 TraesCS2D01G500600 chr2B 86.947 452 46 10 3115 3565 722632607 722633046 3.980000e-136 496.0
14 TraesCS2D01G500600 chr2B 92.143 140 11 0 3683 3822 779861194 779861055 1.260000e-46 198.0
15 TraesCS2D01G500600 chr2B 93.333 120 7 1 5595 5713 722634780 722634899 5.890000e-40 176.0
16 TraesCS2D01G500600 chr2B 92.188 64 5 0 4441 4504 532079694 532079631 2.190000e-14 91.6
17 TraesCS2D01G500600 chr2B 90.909 66 2 4 4441 4504 532079631 532079694 1.020000e-12 86.1
18 TraesCS2D01G500600 chr2B 91.935 62 1 3 4443 4501 243083764 243083824 3.670000e-12 84.2
19 TraesCS2D01G500600 chr2B 89.394 66 4 3 4439 4503 651357044 651357107 4.750000e-11 80.5
20 TraesCS2D01G500600 chr2B 91.379 58 5 0 4444 4501 779050003 779049946 4.750000e-11 80.5
21 TraesCS2D01G500600 chr2B 90.323 62 3 2 4444 4502 483948473 483948534 1.710000e-10 78.7
22 TraesCS2D01G500600 chr1D 95.745 141 6 0 3686 3826 313570048 313569908 1.600000e-55 228.0
23 TraesCS2D01G500600 chr1D 83.516 91 14 1 5420 5509 494146346 494146256 3.670000e-12 84.2
24 TraesCS2D01G500600 chr1B 94.326 141 6 1 3686 3826 397796435 397796297 1.250000e-51 215.0
25 TraesCS2D01G500600 chr1B 88.571 70 7 1 5441 5509 687410611 687410542 3.670000e-12 84.2
26 TraesCS2D01G500600 chr4B 93.056 144 10 0 3683 3826 494694656 494694799 1.610000e-50 211.0
27 TraesCS2D01G500600 chr4B 90.411 73 4 2 5420 5492 370424038 370424107 6.100000e-15 93.5
28 TraesCS2D01G500600 chr4A 93.007 143 9 1 3682 3824 650872569 650872428 2.090000e-49 207.0
29 TraesCS2D01G500600 chr4A 91.765 85 7 0 5424 5508 187263717 187263801 1.010000e-22 119.0
30 TraesCS2D01G500600 chr5A 91.608 143 11 1 3686 3828 676322211 676322070 4.520000e-46 196.0
31 TraesCS2D01G500600 chr4D 90.845 142 8 4 3689 3828 305139581 305139719 9.780000e-43 185.0
32 TraesCS2D01G500600 chr3D 96.512 86 3 0 5424 5509 372318728 372318643 5.970000e-30 143.0
33 TraesCS2D01G500600 chr3B 94.253 87 5 0 5424 5510 486382310 486382224 3.590000e-27 134.0
34 TraesCS2D01G500600 chr7D 89.655 87 9 0 5423 5509 602187853 602187767 1.680000e-20 111.0
35 TraesCS2D01G500600 chr5D 88.043 92 11 0 5417 5508 354502059 354501968 6.050000e-20 110.0
36 TraesCS2D01G500600 chr7A 85.897 78 10 1 5414 5491 651087956 651088032 1.320000e-11 82.4
37 TraesCS2D01G500600 chr7A 89.231 65 4 1 4444 4508 652704873 652704812 1.710000e-10 78.7
38 TraesCS2D01G500600 chr7B 89.231 65 4 1 4444 4508 504476550 504476611 1.710000e-10 78.7
39 TraesCS2D01G500600 chr5B 89.062 64 4 3 4442 4502 464889196 464889259 6.140000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G500600 chr2D 595160982 595166696 5714 False 3561.866667 10554 100.0000 1 5715 3 chr2D.!!$F2 5714
1 TraesCS2D01G500600 chr2A 729292662 729298061 5399 False 1229.000000 3626 88.8674 2 5422 5 chr2A.!!$F2 5420
2 TraesCS2D01G500600 chr2B 722629622 722634899 5277 False 1143.600000 3378 88.6210 210 5713 5 chr2B.!!$F5 5503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 602 0.171903 GATGTGTGTGCATTCTGGGC 59.828 55.000 0.00 0.0 0.00 5.36 F
940 1018 0.179062 GCTCCGGCTGATCATCAGTT 60.179 55.000 16.28 0.0 45.94 3.16 F
1335 1418 0.443869 CCTGTTCGTTCGCTTCCATG 59.556 55.000 0.00 0.0 0.00 3.66 F
1750 1880 1.419387 GGATCTGGGATTGACCTCAGG 59.581 57.143 0.00 0.0 37.47 3.86 F
3631 3904 1.173913 CGGGGATTTTGTGGGAAGAC 58.826 55.000 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1377 1462 0.396556 TATCCCGAGCTGCCACTACA 60.397 55.000 0.00 0.0 0.00 2.74 R
1958 2107 1.774217 TGGGTCCTCCACTGGCTTT 60.774 57.895 0.00 0.0 41.46 3.51 R
3219 3469 1.134699 GCTCATTCGGTCAGTCATGGA 60.135 52.381 0.00 0.0 0.00 3.41 R
3684 3960 0.539986 GTGGATCCGAACAGGGCTTA 59.460 55.000 7.39 0.0 41.52 3.09 R
5148 5494 0.167689 GCAAGAGCTCTGCCTTTTCG 59.832 55.000 19.06 0.0 37.91 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.593773 CGGTTTCCACTTTTGCCGTG 60.594 55.000 0.00 0.00 35.11 4.94
48 49 1.554042 CTTTTGCCGTGCTACGACGT 61.554 55.000 5.52 5.52 46.05 4.34
57 58 3.487376 CCGTGCTACGACGTAGGATAAAA 60.487 47.826 30.51 0.00 46.05 1.52
58 59 3.479949 CGTGCTACGACGTAGGATAAAAC 59.520 47.826 30.51 17.40 46.05 2.43
60 61 3.443329 TGCTACGACGTAGGATAAAACCA 59.557 43.478 30.51 17.23 36.71 3.67
107 116 0.521735 GAACGCAGGGCCAAAAGTAG 59.478 55.000 6.18 0.00 0.00 2.57
247 263 0.739462 CCCGACGCAAAGACATGCTA 60.739 55.000 0.00 0.00 44.21 3.49
276 292 2.243221 CAAAGGGGATGAAGGGATGACT 59.757 50.000 0.00 0.00 0.00 3.41
285 301 0.544357 AAGGGATGACTGTCCGTCCA 60.544 55.000 22.75 0.98 42.63 4.02
355 375 2.434185 TCAATGAGACACGCCGCC 60.434 61.111 0.00 0.00 0.00 6.13
403 428 2.817396 GGTCTTGCTCCGCTCTGC 60.817 66.667 0.00 0.00 0.00 4.26
439 464 2.435059 GTTGGAGAGGTCGCCTGC 60.435 66.667 2.98 0.00 36.72 4.85
510 535 5.702670 GCATCTTTCATTTCATATCCGGAGA 59.297 40.000 11.34 5.47 0.00 3.71
527 561 3.403968 GGAGAGAAGGAACAAGGAACAC 58.596 50.000 0.00 0.00 0.00 3.32
534 568 6.126409 AGAAGGAACAAGGAACACATTGTAA 58.874 36.000 0.00 0.00 38.66 2.41
535 569 6.605594 AGAAGGAACAAGGAACACATTGTAAA 59.394 34.615 0.00 0.00 38.66 2.01
536 570 6.144078 AGGAACAAGGAACACATTGTAAAC 57.856 37.500 0.00 0.00 38.66 2.01
560 594 2.099405 TCTATCCGAGATGTGTGTGCA 58.901 47.619 0.00 0.00 0.00 4.57
565 599 1.395954 CCGAGATGTGTGTGCATTCTG 59.604 52.381 0.00 0.00 0.00 3.02
566 600 1.395954 CGAGATGTGTGTGCATTCTGG 59.604 52.381 0.00 0.00 0.00 3.86
568 602 0.171903 GATGTGTGTGCATTCTGGGC 59.828 55.000 0.00 0.00 0.00 5.36
570 604 2.672651 TGTGTGCATTCTGGGCGG 60.673 61.111 0.00 0.00 0.00 6.13
576 610 4.431131 CATTCTGGGCGGGGCAGT 62.431 66.667 0.00 0.00 0.00 4.40
687 739 1.658717 CGCGGCCACTAGAATCTCG 60.659 63.158 2.24 0.00 0.00 4.04
701 753 2.325583 ATCTCGCCCGCAATCTAAAA 57.674 45.000 0.00 0.00 0.00 1.52
711 763 6.531439 GCCCGCAATCTAAAATACTTATACG 58.469 40.000 0.00 0.00 0.00 3.06
712 764 6.531439 CCCGCAATCTAAAATACTTATACGC 58.469 40.000 0.00 0.00 0.00 4.42
713 765 6.367969 CCCGCAATCTAAAATACTTATACGCT 59.632 38.462 0.00 0.00 0.00 5.07
714 766 7.095355 CCCGCAATCTAAAATACTTATACGCTT 60.095 37.037 0.00 0.00 0.00 4.68
715 767 7.950496 CCGCAATCTAAAATACTTATACGCTTC 59.050 37.037 0.00 0.00 0.00 3.86
716 768 7.950496 CGCAATCTAAAATACTTATACGCTTCC 59.050 37.037 0.00 0.00 0.00 3.46
717 769 8.989980 GCAATCTAAAATACTTATACGCTTCCT 58.010 33.333 0.00 0.00 0.00 3.36
721 773 8.921205 TCTAAAATACTTATACGCTTCCTTCCT 58.079 33.333 0.00 0.00 0.00 3.36
722 774 9.543783 CTAAAATACTTATACGCTTCCTTCCTT 57.456 33.333 0.00 0.00 0.00 3.36
724 776 6.726490 ATACTTATACGCTTCCTTCCTTCA 57.274 37.500 0.00 0.00 0.00 3.02
725 777 5.416271 ACTTATACGCTTCCTTCCTTCAA 57.584 39.130 0.00 0.00 0.00 2.69
726 778 5.801380 ACTTATACGCTTCCTTCCTTCAAA 58.199 37.500 0.00 0.00 0.00 2.69
727 779 6.235664 ACTTATACGCTTCCTTCCTTCAAAA 58.764 36.000 0.00 0.00 0.00 2.44
728 780 6.148976 ACTTATACGCTTCCTTCCTTCAAAAC 59.851 38.462 0.00 0.00 0.00 2.43
729 781 1.954382 ACGCTTCCTTCCTTCAAAACC 59.046 47.619 0.00 0.00 0.00 3.27
731 783 2.287608 CGCTTCCTTCCTTCAAAACCAC 60.288 50.000 0.00 0.00 0.00 4.16
734 786 4.522789 GCTTCCTTCCTTCAAAACCACATA 59.477 41.667 0.00 0.00 0.00 2.29
735 787 5.335976 GCTTCCTTCCTTCAAAACCACATAG 60.336 44.000 0.00 0.00 0.00 2.23
736 788 5.576563 TCCTTCCTTCAAAACCACATAGA 57.423 39.130 0.00 0.00 0.00 1.98
737 789 6.139679 TCCTTCCTTCAAAACCACATAGAT 57.860 37.500 0.00 0.00 0.00 1.98
738 790 7.265599 TCCTTCCTTCAAAACCACATAGATA 57.734 36.000 0.00 0.00 0.00 1.98
769 821 4.933064 CGATCTCGCAGGTCGCCC 62.933 72.222 6.00 0.00 37.30 6.13
820 882 3.263503 CTCGTCCGCGTCCTTGTCA 62.264 63.158 4.92 0.00 39.49 3.58
828 890 0.249911 GCGTCCTTGTCAGGTGAGTT 60.250 55.000 0.00 0.00 41.69 3.01
831 893 2.557056 CGTCCTTGTCAGGTGAGTTCTA 59.443 50.000 0.00 0.00 41.69 2.10
838 900 2.557490 GTCAGGTGAGTTCTACGGACTT 59.443 50.000 0.00 0.00 0.00 3.01
855 917 2.012673 ACTTCTCGATGCAATGCTTCC 58.987 47.619 14.28 0.00 30.42 3.46
916 994 1.608801 GCAATGGCCCTGTTTCCTTTG 60.609 52.381 0.00 0.00 39.26 2.77
919 997 0.398381 TGGCCCTGTTTCCTTTGCTT 60.398 50.000 0.00 0.00 0.00 3.91
924 1002 2.546584 CCCTGTTTCCTTTGCTTTGCTC 60.547 50.000 0.00 0.00 0.00 4.26
925 1003 2.546584 CCTGTTTCCTTTGCTTTGCTCC 60.547 50.000 0.00 0.00 0.00 4.70
928 1006 1.805428 TTCCTTTGCTTTGCTCCGGC 61.805 55.000 0.00 0.00 39.26 6.13
935 1013 1.099879 GCTTTGCTCCGGCTGATCAT 61.100 55.000 0.00 0.00 39.59 2.45
937 1015 0.252761 TTTGCTCCGGCTGATCATCA 59.747 50.000 0.00 0.00 39.59 3.07
938 1016 0.179065 TTGCTCCGGCTGATCATCAG 60.179 55.000 10.64 10.64 46.90 2.90
939 1017 1.332889 TGCTCCGGCTGATCATCAGT 61.333 55.000 16.28 0.00 45.94 3.41
940 1018 0.179062 GCTCCGGCTGATCATCAGTT 60.179 55.000 16.28 0.00 45.94 3.16
941 1019 1.069204 GCTCCGGCTGATCATCAGTTA 59.931 52.381 16.28 0.00 45.94 2.24
942 1020 2.289320 GCTCCGGCTGATCATCAGTTAT 60.289 50.000 16.28 0.00 45.94 1.89
943 1021 3.324117 CTCCGGCTGATCATCAGTTATG 58.676 50.000 16.28 3.93 45.94 1.90
944 1022 2.700371 TCCGGCTGATCATCAGTTATGT 59.300 45.455 16.28 0.00 45.94 2.29
945 1023 3.062763 CCGGCTGATCATCAGTTATGTC 58.937 50.000 16.28 0.00 45.94 3.06
946 1024 3.244009 CCGGCTGATCATCAGTTATGTCT 60.244 47.826 16.28 0.00 45.94 3.41
947 1025 3.986572 CGGCTGATCATCAGTTATGTCTC 59.013 47.826 16.28 0.00 45.94 3.36
948 1026 4.261952 CGGCTGATCATCAGTTATGTCTCT 60.262 45.833 16.28 0.00 45.94 3.10
949 1027 5.609423 GGCTGATCATCAGTTATGTCTCTT 58.391 41.667 16.28 0.00 45.94 2.85
951 1029 5.050227 GCTGATCATCAGTTATGTCTCTTGC 60.050 44.000 16.28 0.00 45.94 4.01
952 1030 6.231258 TGATCATCAGTTATGTCTCTTGCT 57.769 37.500 0.00 0.00 36.89 3.91
954 1032 5.665916 TCATCAGTTATGTCTCTTGCTGA 57.334 39.130 0.00 0.00 36.89 4.26
955 1033 6.041423 TCATCAGTTATGTCTCTTGCTGAA 57.959 37.500 0.00 0.00 36.70 3.02
958 1036 4.284490 TCAGTTATGTCTCTTGCTGAAGGT 59.716 41.667 0.00 0.00 31.14 3.50
959 1037 4.999950 CAGTTATGTCTCTTGCTGAAGGTT 59.000 41.667 0.00 0.00 0.00 3.50
960 1038 5.471456 CAGTTATGTCTCTTGCTGAAGGTTT 59.529 40.000 0.00 0.00 0.00 3.27
961 1039 5.471456 AGTTATGTCTCTTGCTGAAGGTTTG 59.529 40.000 0.00 0.00 0.00 2.93
963 1041 2.172505 TGTCTCTTGCTGAAGGTTTGGA 59.827 45.455 0.00 0.00 0.00 3.53
964 1042 2.810852 GTCTCTTGCTGAAGGTTTGGAG 59.189 50.000 0.00 0.00 0.00 3.86
965 1043 2.157738 CTCTTGCTGAAGGTTTGGAGG 58.842 52.381 0.00 0.00 0.00 4.30
966 1044 0.600057 CTTGCTGAAGGTTTGGAGGC 59.400 55.000 0.00 0.00 0.00 4.70
967 1045 1.172180 TTGCTGAAGGTTTGGAGGCG 61.172 55.000 0.00 0.00 0.00 5.52
968 1046 2.335712 GCTGAAGGTTTGGAGGCGG 61.336 63.158 0.00 0.00 0.00 6.13
969 1047 2.282180 TGAAGGTTTGGAGGCGGC 60.282 61.111 0.00 0.00 0.00 6.53
970 1048 2.282180 GAAGGTTTGGAGGCGGCA 60.282 61.111 13.08 0.00 0.00 5.69
971 1049 2.282462 AAGGTTTGGAGGCGGCAG 60.282 61.111 13.08 0.00 0.00 4.85
972 1050 2.748058 GAAGGTTTGGAGGCGGCAGA 62.748 60.000 13.08 0.00 0.00 4.26
973 1051 2.747855 GGTTTGGAGGCGGCAGAG 60.748 66.667 13.08 0.00 0.00 3.35
974 1052 2.032681 GTTTGGAGGCGGCAGAGT 59.967 61.111 13.08 0.00 0.00 3.24
975 1053 1.295423 GTTTGGAGGCGGCAGAGTA 59.705 57.895 13.08 0.00 0.00 2.59
976 1054 1.019805 GTTTGGAGGCGGCAGAGTAC 61.020 60.000 13.08 0.00 0.00 2.73
977 1055 2.180159 TTTGGAGGCGGCAGAGTACC 62.180 60.000 13.08 5.15 0.00 3.34
978 1056 2.760385 GGAGGCGGCAGAGTACCT 60.760 66.667 13.08 0.00 34.43 3.08
992 1070 6.152492 GGCAGAGTACCTGTAAGTAAGTAAGT 59.848 42.308 11.47 0.00 44.71 2.24
1290 1373 2.778997 CGCCGCTCTTTTCTCGTCG 61.779 63.158 0.00 0.00 0.00 5.12
1291 1374 3.072666 GCCGCTCTTTTCTCGTCGC 62.073 63.158 0.00 0.00 0.00 5.19
1292 1375 1.733041 CCGCTCTTTTCTCGTCGCA 60.733 57.895 0.00 0.00 0.00 5.10
1296 1379 2.092148 CTTTTCTCGTCGCACGCG 59.908 61.111 3.53 3.53 42.21 6.01
1335 1418 0.443869 CCTGTTCGTTCGCTTCCATG 59.556 55.000 0.00 0.00 0.00 3.66
1343 1426 2.286595 CGTTCGCTTCCATGGATTGATG 60.287 50.000 17.06 8.18 0.00 3.07
1370 1453 3.129502 CCATGCGAGCACAGTGGG 61.130 66.667 1.84 0.00 0.00 4.61
1383 1468 2.370281 CAGTGGGTACTGCTGTAGTG 57.630 55.000 8.75 0.00 46.93 2.74
1403 1488 1.526887 CAGCTCGGGATAGGCCAAA 59.473 57.895 5.01 0.00 38.95 3.28
1460 1545 8.591940 AGATTAGATTAGATTAGCACATGAGCA 58.408 33.333 17.61 0.00 36.85 4.26
1513 1631 9.490663 CTAATAATAGACAAAGTTTTCAAGGCG 57.509 33.333 0.00 0.00 0.00 5.52
1656 1782 4.142204 TGGCATGCACCACTATTATGTTTG 60.142 41.667 21.36 0.00 33.75 2.93
1738 1868 1.918253 CAGGGTTGGAGGATCTGGG 59.082 63.158 0.00 0.00 33.73 4.45
1750 1880 1.419387 GGATCTGGGATTGACCTCAGG 59.581 57.143 0.00 0.00 37.47 3.86
1766 1896 3.308402 CCTCAGGAGCAAATCAAGGGTAA 60.308 47.826 0.00 0.00 0.00 2.85
1772 1902 2.228822 AGCAAATCAAGGGTAAGCGTTG 59.771 45.455 0.00 0.00 0.00 4.10
1782 1912 2.221055 GGGTAAGCGTTGCATATCTTCG 59.779 50.000 0.00 0.00 0.00 3.79
1784 1914 3.060473 GGTAAGCGTTGCATATCTTCGTC 60.060 47.826 0.00 0.00 0.00 4.20
1785 1915 2.293677 AGCGTTGCATATCTTCGTCA 57.706 45.000 0.00 0.00 0.00 4.35
1789 1919 3.001228 GCGTTGCATATCTTCGTCATCAA 59.999 43.478 0.00 0.00 0.00 2.57
1790 1920 4.494035 GCGTTGCATATCTTCGTCATCAAA 60.494 41.667 0.00 0.00 0.00 2.69
1797 1932 6.700020 CATATCTTCGTCATCAAATATCGCC 58.300 40.000 0.00 0.00 0.00 5.54
1807 1942 3.340034 TCAAATATCGCCGTTTCCTTGT 58.660 40.909 0.00 0.00 0.00 3.16
1815 1950 5.204409 TCGCCGTTTCCTTGTATACATAT 57.796 39.130 6.36 0.00 0.00 1.78
1836 1983 9.227777 ACATATTTTGTAGTGTTCTTAAGGGAC 57.772 33.333 1.85 3.00 36.57 4.46
1839 1986 5.534207 TTGTAGTGTTCTTAAGGGACGAA 57.466 39.130 1.85 0.00 0.00 3.85
1844 1991 4.124970 GTGTTCTTAAGGGACGAACAGTT 58.875 43.478 1.85 0.00 45.18 3.16
1845 1992 4.210746 GTGTTCTTAAGGGACGAACAGTTC 59.789 45.833 2.85 2.85 45.18 3.01
1865 2014 7.496263 ACAGTTCTTTCTCTCCAGAAGTTTTAC 59.504 37.037 0.00 0.00 39.90 2.01
1958 2107 4.627058 TGCTACTGTTTCAGACGATTTCA 58.373 39.130 3.70 0.00 35.18 2.69
1976 2125 1.774217 AAAGCCAGTGGAGGACCCA 60.774 57.895 15.20 0.00 44.25 4.51
2068 2217 6.935208 GTCATCCTATAGTAAGCGGGAAATTT 59.065 38.462 0.00 0.00 0.00 1.82
2074 2223 7.713942 CCTATAGTAAGCGGGAAATTTACTGTT 59.286 37.037 10.97 1.61 37.95 3.16
2099 2254 1.610038 TGTTCTTCAGCCTTGCACATG 59.390 47.619 0.00 0.00 0.00 3.21
2117 2272 5.505324 GCACATGCAGAGTAATCTGGATTTC 60.505 44.000 22.41 11.72 44.55 2.17
2218 2373 4.279922 GGCAACAACATACTGGTACCTTTT 59.720 41.667 14.36 0.00 0.00 2.27
2225 2383 6.267496 ACATACTGGTACCTTTTTGAATGC 57.733 37.500 14.36 0.00 0.00 3.56
2240 2398 6.788766 TTTGAATGCGCTTTATGTTAATCG 57.211 33.333 9.73 0.00 0.00 3.34
2242 2400 5.874831 TGAATGCGCTTTATGTTAATCGTT 58.125 33.333 9.73 0.00 0.00 3.85
2264 2422 7.652105 TCGTTAAGAGATGATTAATACCAGTGC 59.348 37.037 0.00 0.00 0.00 4.40
2467 2627 5.180868 GCATTTGAGAACCTCTGCCTATATG 59.819 44.000 0.00 0.00 0.00 1.78
2476 2636 3.558746 CCTCTGCCTATATGAAAGCCTGG 60.559 52.174 0.00 0.00 0.00 4.45
3068 3246 4.482386 TCTCGAGGTACTTCGAACAATTG 58.518 43.478 27.11 16.21 41.55 2.32
3071 3249 4.022589 TCGAGGTACTTCGAACAATTGTCT 60.023 41.667 25.60 0.67 41.55 3.41
3097 3275 2.925253 TCCCTGATGGCCTGATATCAT 58.075 47.619 5.72 0.00 33.25 2.45
3103 3281 5.426504 CTGATGGCCTGATATCATAGAACC 58.573 45.833 5.72 4.52 33.25 3.62
3110 3288 5.471456 GCCTGATATCATAGAACCTTGGTTG 59.529 44.000 10.04 0.00 0.00 3.77
3112 3290 6.708054 CCTGATATCATAGAACCTTGGTTGTC 59.292 42.308 10.04 0.00 0.00 3.18
3127 3369 3.263170 TGGTTGTCTATAGGTGCATGTGT 59.737 43.478 0.00 0.00 0.00 3.72
3128 3370 4.468153 TGGTTGTCTATAGGTGCATGTGTA 59.532 41.667 0.00 0.00 0.00 2.90
3129 3371 5.130311 TGGTTGTCTATAGGTGCATGTGTAT 59.870 40.000 0.00 0.00 0.00 2.29
3130 3372 5.466728 GGTTGTCTATAGGTGCATGTGTATG 59.533 44.000 0.00 0.00 37.36 2.39
3131 3373 6.280643 GTTGTCTATAGGTGCATGTGTATGA 58.719 40.000 0.00 0.00 36.36 2.15
3132 3374 6.089249 TGTCTATAGGTGCATGTGTATGAG 57.911 41.667 0.00 0.00 36.36 2.90
3133 3375 5.598417 TGTCTATAGGTGCATGTGTATGAGT 59.402 40.000 0.00 0.00 36.36 3.41
3134 3376 6.098266 TGTCTATAGGTGCATGTGTATGAGTT 59.902 38.462 0.00 0.00 36.36 3.01
3199 3441 4.237349 ACCATAAAACCAGTTTTCGCTG 57.763 40.909 11.57 8.40 41.39 5.18
3214 3464 1.554617 TCGCTGAAACATCAGATCCCA 59.445 47.619 9.89 0.00 39.99 4.37
3215 3465 2.171237 TCGCTGAAACATCAGATCCCAT 59.829 45.455 9.89 0.00 39.99 4.00
3216 3466 3.387699 TCGCTGAAACATCAGATCCCATA 59.612 43.478 9.89 0.00 39.99 2.74
3217 3467 4.129380 CGCTGAAACATCAGATCCCATAA 58.871 43.478 9.89 0.00 39.99 1.90
3218 3468 4.212847 CGCTGAAACATCAGATCCCATAAG 59.787 45.833 9.89 0.00 39.99 1.73
3219 3469 5.128919 GCTGAAACATCAGATCCCATAAGT 58.871 41.667 9.89 0.00 39.99 2.24
3220 3470 5.238214 GCTGAAACATCAGATCCCATAAGTC 59.762 44.000 9.89 0.00 39.99 3.01
3221 3471 5.684704 TGAAACATCAGATCCCATAAGTCC 58.315 41.667 0.00 0.00 0.00 3.85
3224 3474 5.238624 ACATCAGATCCCATAAGTCCATG 57.761 43.478 0.00 0.00 0.00 3.66
3232 3482 2.483714 CCCATAAGTCCATGACTGACCG 60.484 54.545 0.00 0.00 42.59 4.79
3234 3484 3.118775 CCATAAGTCCATGACTGACCGAA 60.119 47.826 0.00 0.00 42.59 4.30
3238 3488 2.167281 AGTCCATGACTGACCGAATGAG 59.833 50.000 0.00 0.00 41.76 2.90
3249 3499 2.749621 GACCGAATGAGCATCCTTTTGT 59.250 45.455 0.00 0.00 0.00 2.83
3258 3508 9.674824 GAATGAGCATCCTTTTGTTGATATTAG 57.325 33.333 0.00 0.00 0.00 1.73
3259 3509 7.031226 TGAGCATCCTTTTGTTGATATTAGC 57.969 36.000 0.00 0.00 0.00 3.09
3263 3513 8.534496 AGCATCCTTTTGTTGATATTAGCTTTT 58.466 29.630 0.00 0.00 0.00 2.27
3267 3517 9.691362 TCCTTTTGTTGATATTAGCTTTTTCAC 57.309 29.630 0.00 0.00 0.00 3.18
3375 3625 6.136155 CCCAAAACCAATCCAGGTATATTCT 58.864 40.000 0.00 0.00 42.25 2.40
3387 3637 9.614792 ATCCAGGTATATTCTTGTAAGTTGTTC 57.385 33.333 0.00 0.00 0.00 3.18
3538 3788 9.793252 CATTACTTTTGCAAAGTATATCTTGCT 57.207 29.630 12.41 5.16 36.40 3.91
3541 3791 8.335532 ACTTTTGCAAAGTATATCTTGCTGTA 57.664 30.769 12.41 5.88 36.40 2.74
3596 3869 6.844696 TTCAGAAAACCTATTATAGCTGCG 57.155 37.500 0.00 0.00 0.00 5.18
3612 3885 5.030874 AGCTGCGTTGAAGTAAATACAAC 57.969 39.130 0.00 0.00 39.96 3.32
3631 3904 1.173913 CGGGGATTTTGTGGGAAGAC 58.826 55.000 0.00 0.00 0.00 3.01
3696 3972 9.106070 ACTATATTTAAACTTAAGCCCTGTTCG 57.894 33.333 1.29 0.00 0.00 3.95
3698 3974 2.943036 AAACTTAAGCCCTGTTCGGA 57.057 45.000 1.29 0.00 33.16 4.55
3699 3975 3.434940 AAACTTAAGCCCTGTTCGGAT 57.565 42.857 1.29 0.00 33.16 4.18
3700 3976 2.693267 ACTTAAGCCCTGTTCGGATC 57.307 50.000 1.29 0.00 33.16 3.36
3701 3977 1.209747 ACTTAAGCCCTGTTCGGATCC 59.790 52.381 0.00 0.00 33.16 3.36
3702 3978 1.209504 CTTAAGCCCTGTTCGGATCCA 59.790 52.381 13.41 0.00 33.16 3.41
3703 3979 0.539986 TAAGCCCTGTTCGGATCCAC 59.460 55.000 13.41 3.70 33.16 4.02
3705 3981 1.153349 GCCCTGTTCGGATCCACTC 60.153 63.158 13.41 1.28 33.16 3.51
3706 3982 1.522569 CCCTGTTCGGATCCACTCC 59.477 63.158 13.41 0.00 41.07 3.85
3713 3989 2.501610 GGATCCACTCCGCTCCAC 59.498 66.667 6.95 0.00 33.29 4.02
3716 3992 2.914777 GATCCACTCCGCTCCACAGC 62.915 65.000 0.00 0.00 42.96 4.40
3717 3993 3.699894 CCACTCCGCTCCACAGCT 61.700 66.667 0.00 0.00 44.40 4.24
3718 3994 2.433838 CACTCCGCTCCACAGCTG 60.434 66.667 13.48 13.48 44.40 4.24
3719 3995 4.385405 ACTCCGCTCCACAGCTGC 62.385 66.667 15.27 0.00 44.40 5.25
3720 3996 4.383861 CTCCGCTCCACAGCTGCA 62.384 66.667 15.27 0.00 44.40 4.41
3721 3997 3.889134 CTCCGCTCCACAGCTGCAA 62.889 63.158 15.27 0.00 44.40 4.08
3722 3998 3.730761 CCGCTCCACAGCTGCAAC 61.731 66.667 15.27 0.00 44.40 4.17
3723 3999 2.667536 CGCTCCACAGCTGCAACT 60.668 61.111 15.27 0.00 44.40 3.16
3724 4000 2.675056 CGCTCCACAGCTGCAACTC 61.675 63.158 15.27 0.00 44.40 3.01
3725 4001 2.331132 GCTCCACAGCTGCAACTCC 61.331 63.158 15.27 0.00 43.09 3.85
3726 4002 1.673665 CTCCACAGCTGCAACTCCC 60.674 63.158 15.27 0.00 0.00 4.30
3727 4003 3.052082 CCACAGCTGCAACTCCCG 61.052 66.667 15.27 0.00 0.00 5.14
3728 4004 3.052082 CACAGCTGCAACTCCCGG 61.052 66.667 15.27 0.00 0.00 5.73
3729 4005 3.241530 ACAGCTGCAACTCCCGGA 61.242 61.111 15.27 0.00 0.00 5.14
3730 4006 2.435586 CAGCTGCAACTCCCGGAG 60.436 66.667 13.31 13.31 35.52 4.63
3745 4021 4.200283 GAGCGGAGGGAGCGACAG 62.200 72.222 0.00 0.00 40.04 3.51
3763 4039 4.214383 CGCAATCGCACGGAGCTG 62.214 66.667 0.00 0.00 42.61 4.24
3764 4040 4.527157 GCAATCGCACGGAGCTGC 62.527 66.667 0.00 0.00 42.61 5.25
3765 4041 2.816958 CAATCGCACGGAGCTGCT 60.817 61.111 0.00 0.00 42.61 4.24
3766 4042 2.510238 AATCGCACGGAGCTGCTC 60.510 61.111 21.17 21.17 42.61 4.26
3767 4043 3.300934 AATCGCACGGAGCTGCTCA 62.301 57.895 28.95 9.65 42.61 4.26
3768 4044 3.713205 ATCGCACGGAGCTGCTCAG 62.713 63.158 28.95 26.86 42.61 3.35
3769 4045 4.426112 CGCACGGAGCTGCTCAGA 62.426 66.667 31.38 0.00 42.61 3.27
3770 4046 2.813042 GCACGGAGCTGCTCAGAC 60.813 66.667 31.38 20.17 41.15 3.51
3771 4047 2.125753 CACGGAGCTGCTCAGACC 60.126 66.667 31.38 14.93 31.08 3.85
3772 4048 3.386237 ACGGAGCTGCTCAGACCC 61.386 66.667 31.38 14.57 31.08 4.46
3773 4049 3.385384 CGGAGCTGCTCAGACCCA 61.385 66.667 28.95 0.00 31.08 4.51
3774 4050 2.583520 GGAGCTGCTCAGACCCAG 59.416 66.667 28.95 0.00 31.08 4.45
3778 4054 2.583520 CTGCTCAGACCCAGCTCC 59.416 66.667 0.00 0.00 37.79 4.70
3779 4055 1.988956 CTGCTCAGACCCAGCTCCT 60.989 63.158 0.00 0.00 37.79 3.69
3780 4056 1.958902 CTGCTCAGACCCAGCTCCTC 61.959 65.000 0.00 0.00 37.79 3.71
3781 4057 3.074999 GCTCAGACCCAGCTCCTCG 62.075 68.421 0.00 0.00 33.75 4.63
3782 4058 3.071206 TCAGACCCAGCTCCTCGC 61.071 66.667 0.00 0.00 39.57 5.03
3783 4059 3.385384 CAGACCCAGCTCCTCGCA 61.385 66.667 0.00 0.00 42.61 5.10
3784 4060 3.386237 AGACCCAGCTCCTCGCAC 61.386 66.667 0.00 0.00 42.61 5.34
3785 4061 4.803426 GACCCAGCTCCTCGCACG 62.803 72.222 0.00 0.00 42.61 5.34
3798 4074 2.556287 GCACGGAGCGGAGTTTTG 59.444 61.111 0.00 0.00 0.00 2.44
3799 4075 1.959226 GCACGGAGCGGAGTTTTGA 60.959 57.895 0.00 0.00 0.00 2.69
3800 4076 1.503818 GCACGGAGCGGAGTTTTGAA 61.504 55.000 0.00 0.00 0.00 2.69
3801 4077 0.941542 CACGGAGCGGAGTTTTGAAA 59.058 50.000 0.00 0.00 0.00 2.69
3802 4078 1.535462 CACGGAGCGGAGTTTTGAAAT 59.465 47.619 0.00 0.00 0.00 2.17
3803 4079 1.535462 ACGGAGCGGAGTTTTGAAATG 59.465 47.619 0.00 0.00 0.00 2.32
3804 4080 1.135689 CGGAGCGGAGTTTTGAAATGG 60.136 52.381 0.00 0.00 0.00 3.16
3805 4081 1.202348 GGAGCGGAGTTTTGAAATGGG 59.798 52.381 0.00 0.00 0.00 4.00
3806 4082 2.159382 GAGCGGAGTTTTGAAATGGGA 58.841 47.619 0.00 0.00 0.00 4.37
3807 4083 2.162408 GAGCGGAGTTTTGAAATGGGAG 59.838 50.000 0.00 0.00 0.00 4.30
3808 4084 2.159382 GCGGAGTTTTGAAATGGGAGA 58.841 47.619 0.00 0.00 0.00 3.71
3809 4085 2.556622 GCGGAGTTTTGAAATGGGAGAA 59.443 45.455 0.00 0.00 0.00 2.87
3810 4086 3.366374 GCGGAGTTTTGAAATGGGAGAAG 60.366 47.826 0.00 0.00 0.00 2.85
3811 4087 3.821033 CGGAGTTTTGAAATGGGAGAAGT 59.179 43.478 0.00 0.00 0.00 3.01
3812 4088 5.001232 CGGAGTTTTGAAATGGGAGAAGTA 58.999 41.667 0.00 0.00 0.00 2.24
3813 4089 5.106673 CGGAGTTTTGAAATGGGAGAAGTAC 60.107 44.000 0.00 0.00 0.00 2.73
3814 4090 5.183331 GGAGTTTTGAAATGGGAGAAGTACC 59.817 44.000 0.00 0.00 0.00 3.34
3815 4091 4.760204 AGTTTTGAAATGGGAGAAGTACCG 59.240 41.667 0.00 0.00 0.00 4.02
3816 4092 4.627284 TTTGAAATGGGAGAAGTACCGA 57.373 40.909 0.00 0.00 0.00 4.69
3817 4093 4.627284 TTGAAATGGGAGAAGTACCGAA 57.373 40.909 0.00 0.00 0.00 4.30
3818 4094 3.934068 TGAAATGGGAGAAGTACCGAAC 58.066 45.455 0.00 0.00 0.00 3.95
3819 4095 3.325425 TGAAATGGGAGAAGTACCGAACA 59.675 43.478 0.00 0.00 0.00 3.18
3820 4096 3.611766 AATGGGAGAAGTACCGAACAG 57.388 47.619 0.00 0.00 0.00 3.16
3822 4098 0.108281 GGGAGAAGTACCGAACAGGC 60.108 60.000 0.00 0.00 46.52 4.85
3823 4099 0.606604 GGAGAAGTACCGAACAGGCA 59.393 55.000 0.00 0.00 46.52 4.75
3824 4100 1.672145 GGAGAAGTACCGAACAGGCAC 60.672 57.143 0.00 0.00 46.52 5.01
3835 4111 4.876107 ACCGAACAGGCACTTATTATCAAG 59.124 41.667 0.00 0.00 46.52 3.02
3857 4133 9.371136 TCAAGTGTTATTCAGAATAGACATGTC 57.629 33.333 18.47 18.47 0.00 3.06
3860 4136 9.593134 AGTGTTATTCAGAATAGACATGTCTTC 57.407 33.333 32.14 23.63 40.93 2.87
3862 4138 9.591792 TGTTATTCAGAATAGACATGTCTTCAG 57.408 33.333 32.14 20.64 40.93 3.02
3876 4156 9.733219 GACATGTCTTCAGTATAGTTACTAACC 57.267 37.037 18.83 0.00 36.50 2.85
4079 4362 0.601841 TGAAGGAAACGAACGGAGGC 60.602 55.000 0.00 0.00 0.00 4.70
4134 4419 1.414181 CTTCTCATGGGTATGGCGAGT 59.586 52.381 0.00 0.00 34.97 4.18
4135 4420 0.752658 TCTCATGGGTATGGCGAGTG 59.247 55.000 0.00 0.00 34.97 3.51
4138 4423 1.557371 TCATGGGTATGGCGAGTGAAA 59.443 47.619 0.00 0.00 34.97 2.69
4140 4425 0.035820 TGGGTATGGCGAGTGAAACC 60.036 55.000 0.00 0.00 37.80 3.27
4148 4433 3.811083 TGGCGAGTGAAACCTTTCTTTA 58.189 40.909 0.00 0.00 37.80 1.85
4149 4434 4.394729 TGGCGAGTGAAACCTTTCTTTAT 58.605 39.130 0.00 0.00 37.80 1.40
4179 4480 1.135170 GCACCCTACTTCGGTACTGAC 60.135 57.143 3.16 0.00 30.42 3.51
4202 4503 4.202050 CCATAGCACTTTGTTTATCAGGGC 60.202 45.833 0.00 0.00 0.00 5.19
4241 4542 0.174845 CTATTCGTGTGGGGCGAGAA 59.825 55.000 0.00 0.00 39.61 2.87
4291 4592 2.296190 CCCCCTTGTTCTGCAAAACTAC 59.704 50.000 4.25 0.00 36.53 2.73
4441 4742 8.548880 ACCTCTTGTGTATATTGTACTGGTAT 57.451 34.615 0.00 0.00 0.00 2.73
4442 4743 9.650714 ACCTCTTGTGTATATTGTACTGGTATA 57.349 33.333 0.00 0.00 0.00 1.47
4453 4754 4.914983 TGTACTGGTATATACTCCCTCCG 58.085 47.826 12.54 0.00 0.00 4.63
4454 4755 4.352001 TGTACTGGTATATACTCCCTCCGT 59.648 45.833 12.54 1.56 0.00 4.69
4455 4756 4.466255 ACTGGTATATACTCCCTCCGTT 57.534 45.455 12.54 0.00 0.00 4.44
4456 4757 4.405548 ACTGGTATATACTCCCTCCGTTC 58.594 47.826 12.54 0.00 0.00 3.95
4457 4758 3.762823 CTGGTATATACTCCCTCCGTTCC 59.237 52.174 12.54 0.00 0.00 3.62
4458 4759 3.140707 TGGTATATACTCCCTCCGTTCCA 59.859 47.826 12.54 0.00 0.00 3.53
4459 4760 4.154942 GGTATATACTCCCTCCGTTCCAA 58.845 47.826 12.54 0.00 0.00 3.53
4460 4761 4.590222 GGTATATACTCCCTCCGTTCCAAA 59.410 45.833 12.54 0.00 0.00 3.28
4461 4762 5.070847 GGTATATACTCCCTCCGTTCCAAAA 59.929 44.000 12.54 0.00 0.00 2.44
4462 4763 5.906772 ATATACTCCCTCCGTTCCAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
4463 4764 7.038799 GGTATATACTCCCTCCGTTCCAAAATA 60.039 40.741 12.54 0.00 0.00 1.40
4464 4765 5.703730 ATACTCCCTCCGTTCCAAAATAA 57.296 39.130 0.00 0.00 0.00 1.40
4465 4766 4.376225 ACTCCCTCCGTTCCAAAATAAA 57.624 40.909 0.00 0.00 0.00 1.40
4466 4767 4.077108 ACTCCCTCCGTTCCAAAATAAAC 58.923 43.478 0.00 0.00 0.00 2.01
4467 4768 3.423749 TCCCTCCGTTCCAAAATAAACC 58.576 45.455 0.00 0.00 0.00 3.27
4468 4769 3.074836 TCCCTCCGTTCCAAAATAAACCT 59.925 43.478 0.00 0.00 0.00 3.50
4469 4770 3.442625 CCCTCCGTTCCAAAATAAACCTC 59.557 47.826 0.00 0.00 0.00 3.85
4470 4771 4.332828 CCTCCGTTCCAAAATAAACCTCT 58.667 43.478 0.00 0.00 0.00 3.69
4471 4772 4.765339 CCTCCGTTCCAAAATAAACCTCTT 59.235 41.667 0.00 0.00 0.00 2.85
4472 4773 5.335661 CCTCCGTTCCAAAATAAACCTCTTG 60.336 44.000 0.00 0.00 0.00 3.02
4473 4774 5.378332 TCCGTTCCAAAATAAACCTCTTGA 58.622 37.500 0.00 0.00 0.00 3.02
4474 4775 5.472137 TCCGTTCCAAAATAAACCTCTTGAG 59.528 40.000 0.00 0.00 0.00 3.02
4475 4776 5.240844 CCGTTCCAAAATAAACCTCTTGAGT 59.759 40.000 0.00 0.00 0.00 3.41
4476 4777 6.371389 CGTTCCAAAATAAACCTCTTGAGTC 58.629 40.000 0.00 0.00 0.00 3.36
4477 4778 6.017440 CGTTCCAAAATAAACCTCTTGAGTCA 60.017 38.462 0.00 0.00 0.00 3.41
4478 4779 7.308589 CGTTCCAAAATAAACCTCTTGAGTCAT 60.309 37.037 0.00 0.00 0.00 3.06
4479 4780 7.687941 TCCAAAATAAACCTCTTGAGTCATC 57.312 36.000 0.00 0.00 0.00 2.92
4480 4781 7.461749 TCCAAAATAAACCTCTTGAGTCATCT 58.538 34.615 0.00 0.00 0.00 2.90
4481 4782 8.602424 TCCAAAATAAACCTCTTGAGTCATCTA 58.398 33.333 0.00 0.00 0.00 1.98
4482 4783 9.401058 CCAAAATAAACCTCTTGAGTCATCTAT 57.599 33.333 0.00 0.00 0.00 1.98
4487 4788 7.693969 AAACCTCTTGAGTCATCTATTTTGG 57.306 36.000 0.00 0.00 0.00 3.28
4488 4789 6.627087 ACCTCTTGAGTCATCTATTTTGGA 57.373 37.500 0.00 0.00 0.00 3.53
4489 4790 7.020827 ACCTCTTGAGTCATCTATTTTGGAA 57.979 36.000 0.00 0.00 0.00 3.53
4490 4791 6.881602 ACCTCTTGAGTCATCTATTTTGGAAC 59.118 38.462 0.00 0.00 0.00 3.62
4491 4792 6.036517 CCTCTTGAGTCATCTATTTTGGAACG 59.963 42.308 0.00 0.00 0.00 3.95
4492 4793 5.874810 TCTTGAGTCATCTATTTTGGAACGG 59.125 40.000 0.00 0.00 0.00 4.44
4493 4794 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
4494 4795 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
4495 4796 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
4496 4797 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4497 4798 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4498 4799 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4499 4800 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
4500 4801 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
4501 4802 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
4502 4803 6.138263 TCTATTTTGGAACGGAGGGAGTATA 58.862 40.000 0.00 0.00 0.00 1.47
4503 4804 5.906772 ATTTTGGAACGGAGGGAGTATAT 57.093 39.130 0.00 0.00 0.00 0.86
4504 4805 7.951806 TCTATTTTGGAACGGAGGGAGTATATA 59.048 37.037 0.00 0.00 0.00 0.86
4505 4806 7.569599 ATTTTGGAACGGAGGGAGTATATAT 57.430 36.000 0.00 0.00 0.00 0.86
4506 4807 6.600882 TTTGGAACGGAGGGAGTATATATC 57.399 41.667 0.00 0.00 0.00 1.63
4507 4808 5.265290 TGGAACGGAGGGAGTATATATCA 57.735 43.478 0.00 0.00 0.00 2.15
4508 4809 5.262009 TGGAACGGAGGGAGTATATATCAG 58.738 45.833 0.00 0.00 0.00 2.90
4509 4810 5.222275 TGGAACGGAGGGAGTATATATCAGT 60.222 44.000 0.00 0.00 0.00 3.41
4765 5066 3.550275 GGAAAAGAAAATAAATCGGCGGC 59.450 43.478 7.21 0.00 0.00 6.53
4967 5268 8.007716 ACGTTATTAAAAGGATAATGAATCGCG 58.992 33.333 0.00 0.00 35.21 5.87
5071 5384 2.550978 CAGATGTATCGGTTTTCGGCT 58.449 47.619 0.00 0.00 39.77 5.52
5095 5408 9.404848 GCTAGTTTTCCCTATAAGTTGGTTTAT 57.595 33.333 0.00 0.00 0.00 1.40
5124 5437 9.907229 ATTCTCTTAGTTTTCCCTATAAGTTGG 57.093 33.333 0.00 0.00 0.00 3.77
5125 5438 8.445361 TCTCTTAGTTTTCCCTATAAGTTGGT 57.555 34.615 0.00 0.00 0.00 3.67
5127 5440 9.516546 CTCTTAGTTTTCCCTATAAGTTGGTTT 57.483 33.333 0.00 0.00 0.00 3.27
5168 5514 1.242076 GAAAAGGCAGAGCTCTTGCA 58.758 50.000 27.83 0.00 42.74 4.08
5176 5523 1.540267 CAGAGCTCTTGCATGTTGCTT 59.460 47.619 15.27 9.70 45.31 3.91
5251 5610 0.179000 GCTATGACCACTGTGGAGGG 59.821 60.000 32.30 16.87 40.96 4.30
5252 5611 0.179000 CTATGACCACTGTGGAGGGC 59.821 60.000 32.30 17.66 40.96 5.19
5283 5642 4.147449 CAGATGGTCGCTGCCGGA 62.147 66.667 5.05 0.00 34.56 5.14
5284 5643 4.148825 AGATGGTCGCTGCCGGAC 62.149 66.667 5.05 0.00 34.56 4.79
5285 5644 4.451150 GATGGTCGCTGCCGGACA 62.451 66.667 5.05 1.09 34.56 4.02
5293 5652 4.154347 CTGCCGGACAGCCCTCTC 62.154 72.222 5.05 0.00 40.19 3.20
5294 5653 4.704103 TGCCGGACAGCCCTCTCT 62.704 66.667 5.05 0.00 0.00 3.10
5296 5655 2.043450 CCGGACAGCCCTCTCTCT 60.043 66.667 0.00 0.00 0.00 3.10
5298 5657 2.899505 GGACAGCCCTCTCTCTGC 59.100 66.667 0.00 0.00 33.80 4.26
5299 5658 1.685421 GGACAGCCCTCTCTCTGCT 60.685 63.158 0.00 0.00 33.80 4.24
5304 5663 3.898509 CCCTCTCTCTGCTCGGCG 61.899 72.222 0.00 0.00 0.00 6.46
5305 5664 2.826287 CCTCTCTCTGCTCGGCGA 60.826 66.667 10.14 10.14 0.00 5.54
5306 5665 2.715005 CTCTCTCTGCTCGGCGAG 59.285 66.667 31.40 31.40 33.22 5.03
5338 5720 5.466728 TCTGAAGAAACGAGACAAGGAATTG 59.533 40.000 0.00 0.00 0.00 2.32
5339 5721 4.024048 TGAAGAAACGAGACAAGGAATTGC 60.024 41.667 0.00 0.00 0.00 3.56
5411 5795 2.066262 AGTAAAACAGATCGTGCCGTG 58.934 47.619 0.00 0.00 0.00 4.94
5429 5813 0.465705 TGCTGCTGCATACTACTCCC 59.534 55.000 14.93 0.00 45.31 4.30
5430 5814 0.755686 GCTGCTGCATACTACTCCCT 59.244 55.000 11.11 0.00 39.41 4.20
5431 5815 1.270041 GCTGCTGCATACTACTCCCTC 60.270 57.143 11.11 0.00 39.41 4.30
5432 5816 1.000827 CTGCTGCATACTACTCCCTCG 60.001 57.143 1.31 0.00 0.00 4.63
5433 5817 0.315568 GCTGCATACTACTCCCTCGG 59.684 60.000 0.00 0.00 0.00 4.63
5434 5818 1.693627 CTGCATACTACTCCCTCGGT 58.306 55.000 0.00 0.00 0.00 4.69
5435 5819 2.860009 CTGCATACTACTCCCTCGGTA 58.140 52.381 0.00 0.00 0.00 4.02
5436 5820 2.553172 CTGCATACTACTCCCTCGGTAC 59.447 54.545 0.00 0.00 0.00 3.34
5437 5821 1.885233 GCATACTACTCCCTCGGTACC 59.115 57.143 0.16 0.16 0.00 3.34
5438 5822 2.750807 GCATACTACTCCCTCGGTACCA 60.751 54.545 13.54 0.00 0.00 3.25
5439 5823 3.764218 CATACTACTCCCTCGGTACCAT 58.236 50.000 13.54 0.00 0.00 3.55
5440 5824 4.808665 GCATACTACTCCCTCGGTACCATA 60.809 50.000 13.54 0.00 0.00 2.74
5441 5825 3.959495 ACTACTCCCTCGGTACCATAA 57.041 47.619 13.54 0.00 0.00 1.90
5442 5826 4.466255 ACTACTCCCTCGGTACCATAAT 57.534 45.455 13.54 0.00 0.00 1.28
5443 5827 5.589367 ACTACTCCCTCGGTACCATAATA 57.411 43.478 13.54 0.00 0.00 0.98
5444 5828 6.150034 ACTACTCCCTCGGTACCATAATAT 57.850 41.667 13.54 0.00 0.00 1.28
5445 5829 7.276088 ACTACTCCCTCGGTACCATAATATA 57.724 40.000 13.54 0.00 0.00 0.86
5446 5830 7.702785 ACTACTCCCTCGGTACCATAATATAA 58.297 38.462 13.54 0.00 0.00 0.98
5447 5831 7.833183 ACTACTCCCTCGGTACCATAATATAAG 59.167 40.741 13.54 3.37 0.00 1.73
5448 5832 6.797707 ACTCCCTCGGTACCATAATATAAGA 58.202 40.000 13.54 0.00 0.00 2.10
5449 5833 6.662663 ACTCCCTCGGTACCATAATATAAGAC 59.337 42.308 13.54 0.00 0.00 3.01
5450 5834 5.649395 TCCCTCGGTACCATAATATAAGACG 59.351 44.000 13.54 0.00 0.00 4.18
5451 5835 5.416952 CCCTCGGTACCATAATATAAGACGT 59.583 44.000 13.54 0.00 0.00 4.34
5452 5836 6.071728 CCCTCGGTACCATAATATAAGACGTT 60.072 42.308 13.54 0.00 0.00 3.99
5453 5837 7.373493 CCTCGGTACCATAATATAAGACGTTT 58.627 38.462 13.54 0.00 0.00 3.60
5454 5838 7.869429 CCTCGGTACCATAATATAAGACGTTTT 59.131 37.037 13.54 0.00 0.00 2.43
5455 5839 9.252962 CTCGGTACCATAATATAAGACGTTTTT 57.747 33.333 13.54 0.00 0.00 1.94
5456 5840 9.033481 TCGGTACCATAATATAAGACGTTTTTG 57.967 33.333 13.54 0.00 0.00 2.44
5457 5841 7.795272 CGGTACCATAATATAAGACGTTTTTGC 59.205 37.037 13.54 0.00 0.00 3.68
5458 5842 8.614346 GGTACCATAATATAAGACGTTTTTGCA 58.386 33.333 7.15 0.00 0.00 4.08
5459 5843 9.646336 GTACCATAATATAAGACGTTTTTGCAG 57.354 33.333 0.00 0.00 0.00 4.41
5460 5844 8.276252 ACCATAATATAAGACGTTTTTGCAGT 57.724 30.769 0.00 0.00 0.00 4.40
5461 5845 8.736244 ACCATAATATAAGACGTTTTTGCAGTT 58.264 29.630 0.00 0.00 0.00 3.16
5469 5853 7.820044 AAGACGTTTTTGCAGTTAAATTTGA 57.180 28.000 0.00 0.00 0.00 2.69
5470 5854 7.820044 AGACGTTTTTGCAGTTAAATTTGAA 57.180 28.000 0.00 0.00 0.00 2.69
5471 5855 7.671827 AGACGTTTTTGCAGTTAAATTTGAAC 58.328 30.769 0.00 2.17 0.00 3.18
5472 5856 7.544217 AGACGTTTTTGCAGTTAAATTTGAACT 59.456 29.630 0.00 4.37 37.64 3.01
5495 5879 9.699703 AACTGCAAAAACGTTTTATATTATGGT 57.300 25.926 25.44 13.28 0.00 3.55
5498 5882 9.570488 TGCAAAAACGTTTTATATTATGGTACC 57.430 29.630 25.44 4.43 0.00 3.34
5499 5883 8.735837 GCAAAAACGTTTTATATTATGGTACCG 58.264 33.333 25.44 0.00 0.00 4.02
5500 5884 9.985318 CAAAAACGTTTTATATTATGGTACCGA 57.015 29.630 25.44 0.00 0.00 4.69
5502 5886 7.951530 AACGTTTTATATTATGGTACCGAGG 57.048 36.000 7.57 0.00 0.00 4.63
5503 5887 6.458210 ACGTTTTATATTATGGTACCGAGGG 58.542 40.000 7.57 0.00 0.00 4.30
5504 5888 6.267471 ACGTTTTATATTATGGTACCGAGGGA 59.733 38.462 7.57 0.00 0.00 4.20
5505 5889 6.810182 CGTTTTATATTATGGTACCGAGGGAG 59.190 42.308 7.57 0.00 0.00 4.30
5509 5893 4.736611 ATTATGGTACCGAGGGAGTAGA 57.263 45.455 7.57 0.00 0.00 2.59
5518 5902 2.544685 CGAGGGAGTAGATTGCAACTG 58.455 52.381 0.00 0.00 0.00 3.16
5519 5903 2.166459 CGAGGGAGTAGATTGCAACTGA 59.834 50.000 0.00 0.00 0.00 3.41
5525 5909 3.929610 GAGTAGATTGCAACTGACTCCAC 59.070 47.826 18.92 6.38 0.00 4.02
5529 5913 4.147321 AGATTGCAACTGACTCCACAATT 58.853 39.130 0.00 0.00 0.00 2.32
5551 5935 3.770040 TGCCATCCCACGGACGAG 61.770 66.667 0.00 0.00 32.98 4.18
5566 5950 4.803426 GAGGTCGTGCCGCTGGAG 62.803 72.222 0.00 0.00 43.70 3.86
5579 5963 2.122729 TGGAGTCCAGTCCAGGGG 59.877 66.667 8.12 0.00 41.99 4.79
5580 5964 2.450243 GGAGTCCAGTCCAGGGGA 59.550 66.667 3.60 0.00 36.51 4.81
5581 5965 1.687493 GGAGTCCAGTCCAGGGGAG 60.687 68.421 3.60 0.00 36.51 4.30
5582 5966 2.284995 AGTCCAGTCCAGGGGAGC 60.285 66.667 0.00 0.00 32.85 4.70
5583 5967 3.775654 GTCCAGTCCAGGGGAGCG 61.776 72.222 0.00 0.00 32.85 5.03
5584 5968 3.992641 TCCAGTCCAGGGGAGCGA 61.993 66.667 0.00 0.00 29.39 4.93
5585 5969 3.775654 CCAGTCCAGGGGAGCGAC 61.776 72.222 0.00 0.00 29.39 5.19
5586 5970 2.997315 CAGTCCAGGGGAGCGACA 60.997 66.667 0.00 0.00 29.39 4.35
5587 5971 2.997897 AGTCCAGGGGAGCGACAC 60.998 66.667 0.00 0.00 29.39 3.67
5588 5972 4.436998 GTCCAGGGGAGCGACACG 62.437 72.222 0.00 0.00 29.39 4.49
5599 5983 4.059459 CGACACGGCTGAACGCAC 62.059 66.667 0.00 0.00 41.67 5.34
5634 6018 0.673333 CGTGCCCTTGTGCAGATACA 60.673 55.000 0.00 0.00 43.02 2.29
5639 6023 2.359900 CCCTTGTGCAGATACAGAACC 58.640 52.381 0.00 0.00 0.00 3.62
5663 6047 7.498239 ACCTAACAGAAAAGTAGTGAAGAAACC 59.502 37.037 0.00 0.00 0.00 3.27
5667 6051 4.511826 AGAAAAGTAGTGAAGAAACCGCTG 59.488 41.667 0.00 0.00 0.00 5.18
5669 6053 3.746045 AGTAGTGAAGAAACCGCTGAA 57.254 42.857 0.00 0.00 0.00 3.02
5684 6068 1.725931 GCTGAATGAAAACGCCTGTCG 60.726 52.381 0.00 0.00 45.38 4.35
5685 6069 1.798223 CTGAATGAAAACGCCTGTCGA 59.202 47.619 0.00 0.00 41.67 4.20
5686 6070 2.416547 CTGAATGAAAACGCCTGTCGAT 59.583 45.455 0.00 0.00 41.67 3.59
5713 6098 2.008752 GCCATGGCAGCGTTTATTTT 57.991 45.000 32.08 0.00 41.49 1.82
5714 6099 1.660104 GCCATGGCAGCGTTTATTTTG 59.340 47.619 32.08 0.00 41.49 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.593773 CACGGCAAAAGTGGAAACCG 60.594 55.000 0.00 0.00 45.86 4.44
39 40 3.793492 GTGGTTTTATCCTACGTCGTAGC 59.207 47.826 24.09 10.37 35.06 3.58
48 49 7.414222 CACACTAGTAGGTGGTTTTATCCTA 57.586 40.000 1.45 0.00 41.09 2.94
60 61 2.833631 GTGCAACCACACTAGTAGGT 57.166 50.000 12.22 12.22 41.67 3.08
91 100 1.026718 CCTCTACTTTTGGCCCTGCG 61.027 60.000 0.00 0.00 0.00 5.18
107 116 3.446570 GCACACATGGGCTGCCTC 61.447 66.667 19.68 9.39 42.27 4.70
247 263 1.444933 TCATCCCCTTTGTCAGGTGT 58.555 50.000 0.00 0.00 42.02 4.16
276 292 0.758734 GATGGATGGATGGACGGACA 59.241 55.000 0.00 0.00 0.00 4.02
285 301 5.306419 CGTATAGGATGATGGATGGATGGAT 59.694 44.000 0.00 0.00 0.00 3.41
403 428 1.601419 CCAAACCCAGCCAGATGCAG 61.601 60.000 0.00 0.00 44.83 4.41
439 464 4.569180 CGCCATACCCAGCCCAGG 62.569 72.222 0.00 0.00 0.00 4.45
510 535 4.536765 ACAATGTGTTCCTTGTTCCTTCT 58.463 39.130 0.00 0.00 31.74 2.85
527 561 7.845483 CATCTCGGATAGAGTTGTTTACAATG 58.155 38.462 0.00 0.00 46.86 2.82
536 570 4.108336 CACACACATCTCGGATAGAGTTG 58.892 47.826 5.07 5.07 46.79 3.16
560 594 4.115199 GACTGCCCCGCCCAGAAT 62.115 66.667 0.00 0.00 34.47 2.40
687 739 6.531439 CGTATAAGTATTTTAGATTGCGGGC 58.469 40.000 0.00 0.00 0.00 6.13
701 753 6.726490 TGAAGGAAGGAAGCGTATAAGTAT 57.274 37.500 0.00 0.00 0.00 2.12
711 763 2.693074 TGTGGTTTTGAAGGAAGGAAGC 59.307 45.455 0.00 0.00 0.00 3.86
712 764 6.003950 TCTATGTGGTTTTGAAGGAAGGAAG 58.996 40.000 0.00 0.00 0.00 3.46
713 765 5.947663 TCTATGTGGTTTTGAAGGAAGGAA 58.052 37.500 0.00 0.00 0.00 3.36
714 766 5.576563 TCTATGTGGTTTTGAAGGAAGGA 57.423 39.130 0.00 0.00 0.00 3.36
715 767 7.938140 TTATCTATGTGGTTTTGAAGGAAGG 57.062 36.000 0.00 0.00 0.00 3.46
725 777 8.567948 CGCTGGAAATATTTATCTATGTGGTTT 58.432 33.333 0.00 0.00 0.00 3.27
726 778 7.308589 GCGCTGGAAATATTTATCTATGTGGTT 60.309 37.037 0.00 0.00 0.00 3.67
727 779 6.149474 GCGCTGGAAATATTTATCTATGTGGT 59.851 38.462 0.00 0.00 0.00 4.16
728 780 6.546395 GCGCTGGAAATATTTATCTATGTGG 58.454 40.000 0.00 0.00 0.00 4.17
729 781 6.090763 TCGCGCTGGAAATATTTATCTATGTG 59.909 38.462 5.56 0.00 0.00 3.21
731 783 6.647212 TCGCGCTGGAAATATTTATCTATG 57.353 37.500 5.56 0.00 0.00 2.23
734 786 5.482908 AGATCGCGCTGGAAATATTTATCT 58.517 37.500 5.56 0.77 0.00 1.98
735 787 5.499334 CGAGATCGCGCTGGAAATATTTATC 60.499 44.000 5.77 0.00 0.00 1.75
736 788 4.327357 CGAGATCGCGCTGGAAATATTTAT 59.673 41.667 5.77 0.00 0.00 1.40
737 789 3.673338 CGAGATCGCGCTGGAAATATTTA 59.327 43.478 5.77 0.00 0.00 1.40
738 790 2.476619 CGAGATCGCGCTGGAAATATTT 59.523 45.455 5.77 0.00 0.00 1.40
785 839 2.442458 GACGAGGGAGGAGGGGAC 60.442 72.222 0.00 0.00 0.00 4.46
789 843 1.820481 GACGAGACGAGGGAGGAGG 60.820 68.421 0.00 0.00 0.00 4.30
820 882 3.083293 GAGAAGTCCGTAGAACTCACCT 58.917 50.000 0.00 0.00 0.00 4.00
828 890 1.746470 TGCATCGAGAAGTCCGTAGA 58.254 50.000 0.00 0.00 0.00 2.59
831 893 1.645034 CATTGCATCGAGAAGTCCGT 58.355 50.000 0.00 0.00 0.00 4.69
838 900 1.803998 CGAGGAAGCATTGCATCGAGA 60.804 52.381 11.91 0.00 39.77 4.04
855 917 2.285486 GCGAATGCAACAGAGAATCGAG 60.285 50.000 0.00 0.00 40.37 4.04
886 964 3.517140 GCCATTGCCGCCGATCAA 61.517 61.111 0.00 0.00 0.00 2.57
904 982 2.546584 GGAGCAAAGCAAAGGAAACAGG 60.547 50.000 0.00 0.00 0.00 4.00
911 989 2.259511 GCCGGAGCAAAGCAAAGG 59.740 61.111 5.05 0.00 39.53 3.11
916 994 1.099879 ATGATCAGCCGGAGCAAAGC 61.100 55.000 5.05 0.00 46.46 3.51
919 997 0.179065 CTGATGATCAGCCGGAGCAA 60.179 55.000 9.82 0.00 46.46 3.91
935 1013 4.284490 ACCTTCAGCAAGAGACATAACTGA 59.716 41.667 0.00 0.00 32.62 3.41
937 1015 4.899352 ACCTTCAGCAAGAGACATAACT 57.101 40.909 0.00 0.00 0.00 2.24
938 1016 5.335191 CCAAACCTTCAGCAAGAGACATAAC 60.335 44.000 0.00 0.00 0.00 1.89
939 1017 4.761739 CCAAACCTTCAGCAAGAGACATAA 59.238 41.667 0.00 0.00 0.00 1.90
940 1018 4.041567 TCCAAACCTTCAGCAAGAGACATA 59.958 41.667 0.00 0.00 0.00 2.29
941 1019 3.152341 CCAAACCTTCAGCAAGAGACAT 58.848 45.455 0.00 0.00 0.00 3.06
942 1020 2.172505 TCCAAACCTTCAGCAAGAGACA 59.827 45.455 0.00 0.00 0.00 3.41
943 1021 2.810852 CTCCAAACCTTCAGCAAGAGAC 59.189 50.000 0.00 0.00 0.00 3.36
944 1022 2.224621 CCTCCAAACCTTCAGCAAGAGA 60.225 50.000 0.00 0.00 0.00 3.10
945 1023 2.157738 CCTCCAAACCTTCAGCAAGAG 58.842 52.381 0.00 0.00 0.00 2.85
946 1024 1.819305 GCCTCCAAACCTTCAGCAAGA 60.819 52.381 0.00 0.00 0.00 3.02
947 1025 0.600057 GCCTCCAAACCTTCAGCAAG 59.400 55.000 0.00 0.00 0.00 4.01
948 1026 1.172180 CGCCTCCAAACCTTCAGCAA 61.172 55.000 0.00 0.00 0.00 3.91
949 1027 1.600636 CGCCTCCAAACCTTCAGCA 60.601 57.895 0.00 0.00 0.00 4.41
951 1029 2.335712 GCCGCCTCCAAACCTTCAG 61.336 63.158 0.00 0.00 0.00 3.02
952 1030 2.282180 GCCGCCTCCAAACCTTCA 60.282 61.111 0.00 0.00 0.00 3.02
954 1032 2.282462 CTGCCGCCTCCAAACCTT 60.282 61.111 0.00 0.00 0.00 3.50
955 1033 3.249189 TCTGCCGCCTCCAAACCT 61.249 61.111 0.00 0.00 0.00 3.50
958 1036 1.295423 GTACTCTGCCGCCTCCAAA 59.705 57.895 0.00 0.00 0.00 3.28
959 1037 2.656069 GGTACTCTGCCGCCTCCAA 61.656 63.158 0.00 0.00 0.00 3.53
960 1038 3.075005 GGTACTCTGCCGCCTCCA 61.075 66.667 0.00 0.00 0.00 3.86
961 1039 2.760385 AGGTACTCTGCCGCCTCC 60.760 66.667 0.00 0.00 0.00 4.30
970 1048 7.279758 CGCTACTTACTTACTTACAGGTACTCT 59.720 40.741 0.00 0.00 34.60 3.24
971 1049 7.405769 CGCTACTTACTTACTTACAGGTACTC 58.594 42.308 0.00 0.00 34.60 2.59
972 1050 6.317391 CCGCTACTTACTTACTTACAGGTACT 59.683 42.308 0.00 0.00 43.88 2.73
973 1051 6.490534 CCGCTACTTACTTACTTACAGGTAC 58.509 44.000 0.00 0.00 0.00 3.34
974 1052 5.066505 GCCGCTACTTACTTACTTACAGGTA 59.933 44.000 0.00 0.00 0.00 3.08
975 1053 4.142293 GCCGCTACTTACTTACTTACAGGT 60.142 45.833 0.00 0.00 0.00 4.00
976 1054 4.357996 GCCGCTACTTACTTACTTACAGG 58.642 47.826 0.00 0.00 0.00 4.00
977 1055 4.033684 CGCCGCTACTTACTTACTTACAG 58.966 47.826 0.00 0.00 0.00 2.74
978 1056 3.689161 TCGCCGCTACTTACTTACTTACA 59.311 43.478 0.00 0.00 0.00 2.41
1125 1203 1.973812 GAGGGCCAGCACCTTGAAC 60.974 63.158 6.18 0.00 38.79 3.18
1245 1323 4.078516 GGAAGGGCGCGTAGTGGT 62.079 66.667 8.43 0.00 39.19 4.16
1247 1325 4.832608 GGGGAAGGGCGCGTAGTG 62.833 72.222 8.43 0.00 43.41 2.74
1307 1390 3.530910 AACGAACAGGGTCCGCTGG 62.531 63.158 14.79 1.39 0.00 4.85
1308 1391 2.027625 GAACGAACAGGGTCCGCTG 61.028 63.158 9.54 9.54 0.00 5.18
1309 1392 2.342648 GAACGAACAGGGTCCGCT 59.657 61.111 0.00 0.00 0.00 5.52
1310 1393 3.110178 CGAACGAACAGGGTCCGC 61.110 66.667 0.00 0.00 0.00 5.54
1343 1426 0.659957 GCTCGCATGGAAGTCAATCC 59.340 55.000 0.00 0.00 40.10 3.01
1358 1441 4.578913 CAGTACCCACTGTGCTCG 57.421 61.111 1.29 0.00 46.03 5.03
1376 1461 1.680522 ATCCCGAGCTGCCACTACAG 61.681 60.000 0.00 0.00 40.80 2.74
1377 1462 0.396556 TATCCCGAGCTGCCACTACA 60.397 55.000 0.00 0.00 0.00 2.74
1383 1468 4.321966 GGCCTATCCCGAGCTGCC 62.322 72.222 0.00 0.00 0.00 4.85
1411 1496 8.618240 TCTAATCTAGTGTAATCCCCTGAAAA 57.382 34.615 0.00 0.00 0.00 2.29
1459 1544 3.751175 TCGACTTTAAGGGTGCAAATCTG 59.249 43.478 0.00 0.00 0.00 2.90
1460 1545 4.015872 TCGACTTTAAGGGTGCAAATCT 57.984 40.909 0.00 0.00 0.00 2.40
1513 1631 0.591170 CGTCACAAATCACCCACCAC 59.409 55.000 0.00 0.00 0.00 4.16
1623 1744 1.108776 GTGCATGCCATGACAGGATT 58.891 50.000 16.68 0.00 0.00 3.01
1738 1868 3.614092 TGATTTGCTCCTGAGGTCAATC 58.386 45.455 0.00 3.44 0.00 2.67
1750 1880 2.084546 ACGCTTACCCTTGATTTGCTC 58.915 47.619 0.00 0.00 0.00 4.26
1766 1896 2.293677 TGACGAAGATATGCAACGCT 57.706 45.000 0.00 0.00 0.00 5.07
1772 1902 6.181255 GCGATATTTGATGACGAAGATATGC 58.819 40.000 0.00 0.00 0.00 3.14
1782 1912 3.560068 AGGAAACGGCGATATTTGATGAC 59.440 43.478 16.62 0.00 0.00 3.06
1784 1914 4.201910 ACAAGGAAACGGCGATATTTGATG 60.202 41.667 16.62 5.37 0.00 3.07
1785 1915 3.945285 ACAAGGAAACGGCGATATTTGAT 59.055 39.130 16.62 0.53 0.00 2.57
1789 1919 5.603596 TGTATACAAGGAAACGGCGATATT 58.396 37.500 16.62 5.35 0.00 1.28
1790 1920 5.204409 TGTATACAAGGAAACGGCGATAT 57.796 39.130 16.62 0.00 0.00 1.63
1815 1950 5.916318 TCGTCCCTTAAGAACACTACAAAA 58.084 37.500 3.36 0.00 0.00 2.44
1830 1968 3.388350 AGAGAAAGAACTGTTCGTCCCTT 59.612 43.478 14.35 0.92 34.02 3.95
1831 1969 2.966516 AGAGAAAGAACTGTTCGTCCCT 59.033 45.455 14.35 11.66 34.02 4.20
1836 1983 4.244425 TCTGGAGAGAAAGAACTGTTCG 57.756 45.455 14.35 0.00 34.02 3.95
1839 1986 5.622346 AACTTCTGGAGAGAAAGAACTGT 57.378 39.130 0.00 0.00 37.77 3.55
1844 1991 5.510861 CCCGTAAAACTTCTGGAGAGAAAGA 60.511 44.000 0.00 0.00 37.77 2.52
1845 1992 4.691216 CCCGTAAAACTTCTGGAGAGAAAG 59.309 45.833 0.00 0.00 37.77 2.62
1865 2014 2.759783 CAGTGAACTGCTCATCCCG 58.240 57.895 0.00 0.00 37.15 5.14
1900 2049 6.668323 TGTCAGCAGCAAAAATAGAAAGTAC 58.332 36.000 0.00 0.00 0.00 2.73
1958 2107 1.774217 TGGGTCCTCCACTGGCTTT 60.774 57.895 0.00 0.00 41.46 3.51
1976 2125 3.452627 AGTTCCATTTCGGTAGCTCTGAT 59.547 43.478 0.00 0.00 35.57 2.90
2068 2217 4.065088 GGCTGAAGAACACATGAACAGTA 58.935 43.478 0.00 0.00 0.00 2.74
2074 2223 1.881973 GCAAGGCTGAAGAACACATGA 59.118 47.619 0.00 0.00 0.00 3.07
2099 2254 2.545946 GCCGAAATCCAGATTACTCTGC 59.454 50.000 4.59 0.00 46.39 4.26
2107 2262 2.450476 AGCAAAAGCCGAAATCCAGAT 58.550 42.857 0.00 0.00 0.00 2.90
2117 2272 2.548057 TGAACAGAGTTAGCAAAAGCCG 59.452 45.455 0.00 0.00 0.00 5.52
2218 2373 5.874831 ACGATTAACATAAAGCGCATTCAA 58.125 33.333 11.47 0.00 41.72 2.69
2225 2383 8.752254 TCATCTCTTAACGATTAACATAAAGCG 58.248 33.333 0.00 0.00 43.50 4.68
2240 2398 8.894768 AGCACTGGTATTAATCATCTCTTAAC 57.105 34.615 0.00 0.00 0.00 2.01
2242 2400 8.144478 GTGAGCACTGGTATTAATCATCTCTTA 58.856 37.037 0.00 0.00 0.00 2.10
2264 2422 7.956420 TTACACATGTAACCAGTAAAGTGAG 57.044 36.000 0.00 0.00 35.75 3.51
2467 2627 3.243704 TGTGCAAACAATACCAGGCTTTC 60.244 43.478 0.00 0.00 0.00 2.62
2476 2636 4.593157 TCAACTTCGTGTGCAAACAATAC 58.407 39.130 8.00 0.00 0.00 1.89
2618 2794 8.579850 TTAATTGTCATCTGGTAAATCAAGCT 57.420 30.769 0.00 0.00 0.00 3.74
3097 3275 5.105064 GCACCTATAGACAACCAAGGTTCTA 60.105 44.000 0.51 2.45 38.51 2.10
3103 3281 4.333649 CACATGCACCTATAGACAACCAAG 59.666 45.833 0.00 0.00 0.00 3.61
3110 3288 6.090483 ACTCATACACATGCACCTATAGAC 57.910 41.667 0.00 0.00 31.73 2.59
3112 3290 7.792374 AAAACTCATACACATGCACCTATAG 57.208 36.000 0.00 0.00 31.73 1.31
3199 3441 5.684704 TGGACTTATGGGATCTGATGTTTC 58.315 41.667 0.00 0.00 0.00 2.78
3214 3464 4.405680 TCATTCGGTCAGTCATGGACTTAT 59.594 41.667 0.00 0.00 41.37 1.73
3215 3465 3.767131 TCATTCGGTCAGTCATGGACTTA 59.233 43.478 0.00 0.00 41.37 2.24
3216 3466 2.567169 TCATTCGGTCAGTCATGGACTT 59.433 45.455 0.00 0.00 41.37 3.01
3217 3467 2.167281 CTCATTCGGTCAGTCATGGACT 59.833 50.000 0.00 0.00 44.44 3.85
3218 3468 2.544685 CTCATTCGGTCAGTCATGGAC 58.455 52.381 0.00 0.00 34.52 4.02
3219 3469 1.134699 GCTCATTCGGTCAGTCATGGA 60.135 52.381 0.00 0.00 0.00 3.41
3220 3470 1.293924 GCTCATTCGGTCAGTCATGG 58.706 55.000 0.00 0.00 0.00 3.66
3221 3471 2.014335 TGCTCATTCGGTCAGTCATG 57.986 50.000 0.00 0.00 0.00 3.07
3224 3474 1.137872 AGGATGCTCATTCGGTCAGTC 59.862 52.381 0.00 0.00 0.00 3.51
3232 3482 9.674824 CTAATATCAACAAAAGGATGCTCATTC 57.325 33.333 0.00 0.00 0.00 2.67
3234 3484 7.504911 AGCTAATATCAACAAAAGGATGCTCAT 59.495 33.333 0.00 0.00 0.00 2.90
3238 3488 8.707938 AAAAGCTAATATCAACAAAAGGATGC 57.292 30.769 0.00 0.00 0.00 3.91
3258 3508 7.422878 AGTGCTTACTTAGTAGTGAAAAAGC 57.577 36.000 6.78 6.78 40.35 3.51
3259 3509 9.262358 AGAAGTGCTTACTTAGTAGTGAAAAAG 57.738 33.333 0.00 0.00 35.78 2.27
3430 3680 3.137176 CCATTCCAGTCACCCTACATCAT 59.863 47.826 0.00 0.00 0.00 2.45
3510 3760 8.736742 CAAGATATACTTTGCAAAAGTAATGCG 58.263 33.333 13.84 1.28 40.65 4.73
3515 3765 8.335532 ACAGCAAGATATACTTTGCAAAAGTA 57.664 30.769 13.84 16.32 36.61 2.24
3573 3846 6.346096 ACGCAGCTATAATAGGTTTTCTGAA 58.654 36.000 0.00 0.00 33.57 3.02
3596 3869 6.505044 AATCCCCGTTGTATTTACTTCAAC 57.495 37.500 0.00 0.00 38.30 3.18
3612 3885 1.173913 GTCTTCCCACAAAATCCCCG 58.826 55.000 0.00 0.00 0.00 5.73
3615 3888 4.871933 ATGTTGTCTTCCCACAAAATCC 57.128 40.909 0.00 0.00 38.01 3.01
3631 3904 8.424274 TTGTCTGTTAGTATCAGCATATGTTG 57.576 34.615 12.97 12.97 33.48 3.33
3679 3955 2.943036 TCCGAACAGGGCTTAAGTTT 57.057 45.000 4.02 0.00 41.52 2.66
3682 3958 1.209504 TGGATCCGAACAGGGCTTAAG 59.790 52.381 7.39 0.00 41.52 1.85
3683 3959 1.065709 GTGGATCCGAACAGGGCTTAA 60.066 52.381 7.39 0.00 41.52 1.85
3684 3960 0.539986 GTGGATCCGAACAGGGCTTA 59.460 55.000 7.39 0.00 41.52 3.09
3685 3961 1.201429 AGTGGATCCGAACAGGGCTT 61.201 55.000 7.39 0.00 41.52 4.35
3686 3962 1.613630 AGTGGATCCGAACAGGGCT 60.614 57.895 7.39 0.00 41.52 5.19
3696 3972 2.303549 CTGTGGAGCGGAGTGGATCC 62.304 65.000 4.20 4.20 45.64 3.36
3698 3974 3.023949 GCTGTGGAGCGGAGTGGAT 62.024 63.158 0.00 0.00 34.87 3.41
3699 3975 3.695606 GCTGTGGAGCGGAGTGGA 61.696 66.667 0.00 0.00 34.87 4.02
3707 3983 2.331132 GGAGTTGCAGCTGTGGAGC 61.331 63.158 16.64 0.00 46.64 4.70
3708 3984 1.673665 GGGAGTTGCAGCTGTGGAG 60.674 63.158 16.64 0.00 0.00 3.86
3709 3985 2.431683 GGGAGTTGCAGCTGTGGA 59.568 61.111 16.64 0.00 0.00 4.02
3710 3986 3.052082 CGGGAGTTGCAGCTGTGG 61.052 66.667 16.64 0.00 0.00 4.17
3711 3987 3.052082 CCGGGAGTTGCAGCTGTG 61.052 66.667 16.64 0.00 0.00 3.66
3712 3988 3.241530 TCCGGGAGTTGCAGCTGT 61.242 61.111 16.64 0.00 0.00 4.40
3713 3989 2.435586 CTCCGGGAGTTGCAGCTG 60.436 66.667 16.15 10.11 0.00 4.24
3728 4004 4.200283 CTGTCGCTCCCTCCGCTC 62.200 72.222 0.00 0.00 0.00 5.03
3753 4029 2.813042 GTCTGAGCAGCTCCGTGC 60.813 66.667 20.16 7.54 44.35 5.34
3754 4030 2.125753 GGTCTGAGCAGCTCCGTG 60.126 66.667 20.16 10.03 0.00 4.94
3755 4031 3.386237 GGGTCTGAGCAGCTCCGT 61.386 66.667 20.16 0.00 0.00 4.69
3756 4032 3.368190 CTGGGTCTGAGCAGCTCCG 62.368 68.421 20.16 13.80 0.00 4.63
3757 4033 2.583520 CTGGGTCTGAGCAGCTCC 59.416 66.667 20.16 4.53 0.00 4.70
3758 4034 2.125188 GCTGGGTCTGAGCAGCTC 60.125 66.667 16.21 16.21 37.66 4.09
3759 4035 2.607134 AGCTGGGTCTGAGCAGCT 60.607 61.111 20.35 20.35 45.07 4.24
3760 4036 2.125188 GAGCTGGGTCTGAGCAGC 60.125 66.667 17.54 17.54 39.05 5.25
3761 4037 1.958902 GAGGAGCTGGGTCTGAGCAG 61.959 65.000 9.30 5.70 39.05 4.24
3762 4038 1.986757 GAGGAGCTGGGTCTGAGCA 60.987 63.158 9.30 0.00 39.05 4.26
3763 4039 2.899505 GAGGAGCTGGGTCTGAGC 59.100 66.667 0.00 0.00 36.65 4.26
3764 4040 3.074999 GCGAGGAGCTGGGTCTGAG 62.075 68.421 0.00 0.00 44.04 3.35
3765 4041 3.071206 GCGAGGAGCTGGGTCTGA 61.071 66.667 0.00 0.00 44.04 3.27
3781 4057 1.503818 TTCAAAACTCCGCTCCGTGC 61.504 55.000 0.00 0.00 38.57 5.34
3782 4058 0.941542 TTTCAAAACTCCGCTCCGTG 59.058 50.000 0.00 0.00 0.00 4.94
3783 4059 1.535462 CATTTCAAAACTCCGCTCCGT 59.465 47.619 0.00 0.00 0.00 4.69
3784 4060 1.135689 CCATTTCAAAACTCCGCTCCG 60.136 52.381 0.00 0.00 0.00 4.63
3785 4061 1.202348 CCCATTTCAAAACTCCGCTCC 59.798 52.381 0.00 0.00 0.00 4.70
3786 4062 2.159382 TCCCATTTCAAAACTCCGCTC 58.841 47.619 0.00 0.00 0.00 5.03
3787 4063 2.162681 CTCCCATTTCAAAACTCCGCT 58.837 47.619 0.00 0.00 0.00 5.52
3788 4064 2.159382 TCTCCCATTTCAAAACTCCGC 58.841 47.619 0.00 0.00 0.00 5.54
3789 4065 3.821033 ACTTCTCCCATTTCAAAACTCCG 59.179 43.478 0.00 0.00 0.00 4.63
3790 4066 5.183331 GGTACTTCTCCCATTTCAAAACTCC 59.817 44.000 0.00 0.00 0.00 3.85
3791 4067 5.106673 CGGTACTTCTCCCATTTCAAAACTC 60.107 44.000 0.00 0.00 0.00 3.01
3792 4068 4.760204 CGGTACTTCTCCCATTTCAAAACT 59.240 41.667 0.00 0.00 0.00 2.66
3793 4069 4.758165 TCGGTACTTCTCCCATTTCAAAAC 59.242 41.667 0.00 0.00 0.00 2.43
3794 4070 4.975631 TCGGTACTTCTCCCATTTCAAAA 58.024 39.130 0.00 0.00 0.00 2.44
3795 4071 4.627284 TCGGTACTTCTCCCATTTCAAA 57.373 40.909 0.00 0.00 0.00 2.69
3796 4072 4.202377 TGTTCGGTACTTCTCCCATTTCAA 60.202 41.667 0.00 0.00 0.00 2.69
3797 4073 3.325425 TGTTCGGTACTTCTCCCATTTCA 59.675 43.478 0.00 0.00 0.00 2.69
3798 4074 3.933332 CTGTTCGGTACTTCTCCCATTTC 59.067 47.826 0.00 0.00 0.00 2.17
3799 4075 3.307480 CCTGTTCGGTACTTCTCCCATTT 60.307 47.826 0.00 0.00 0.00 2.32
3800 4076 2.236395 CCTGTTCGGTACTTCTCCCATT 59.764 50.000 0.00 0.00 0.00 3.16
3801 4077 1.831736 CCTGTTCGGTACTTCTCCCAT 59.168 52.381 0.00 0.00 0.00 4.00
3802 4078 1.263356 CCTGTTCGGTACTTCTCCCA 58.737 55.000 0.00 0.00 0.00 4.37
3803 4079 0.108281 GCCTGTTCGGTACTTCTCCC 60.108 60.000 0.00 0.00 34.25 4.30
3804 4080 0.606604 TGCCTGTTCGGTACTTCTCC 59.393 55.000 0.00 0.00 34.25 3.71
3805 4081 1.711206 GTGCCTGTTCGGTACTTCTC 58.289 55.000 0.00 0.00 44.19 2.87
3806 4082 3.908737 GTGCCTGTTCGGTACTTCT 57.091 52.632 0.00 0.00 44.19 2.85
3811 4087 5.601583 TGATAATAAGTGCCTGTTCGGTA 57.398 39.130 0.00 0.00 34.25 4.02
3812 4088 4.481368 TGATAATAAGTGCCTGTTCGGT 57.519 40.909 0.00 0.00 34.25 4.69
3813 4089 4.876107 ACTTGATAATAAGTGCCTGTTCGG 59.124 41.667 0.00 0.00 39.33 4.30
3835 4111 9.371136 TGAAGACATGTCTATTCTGAATAACAC 57.629 33.333 28.10 14.76 39.39 3.32
3907 4187 7.500892 TCTCACTTGCAAATTAAGGACAAACTA 59.499 33.333 0.00 0.00 0.00 2.24
3910 4190 6.707440 TCTCACTTGCAAATTAAGGACAAA 57.293 33.333 0.00 0.00 0.00 2.83
4079 4362 1.827344 TGTCTCATGTAGCCCTGTCAG 59.173 52.381 0.00 0.00 0.00 3.51
4160 4445 1.475682 GGTCAGTACCGAAGTAGGGTG 59.524 57.143 0.00 0.00 38.50 4.61
4171 4456 3.939066 ACAAAGTGCTATGGTCAGTACC 58.061 45.455 0.00 0.00 46.98 3.34
4179 4480 4.202050 GCCCTGATAAACAAAGTGCTATGG 60.202 45.833 0.00 0.00 0.00 2.74
4184 4485 1.539827 ACGCCCTGATAAACAAAGTGC 59.460 47.619 0.00 0.00 0.00 4.40
4241 4542 1.456705 TTTGCCCTTTGCCTCGGTT 60.457 52.632 0.00 0.00 40.16 4.44
4291 4592 1.002201 TGCATTCCCAACCATTGCAAG 59.998 47.619 4.94 0.00 40.11 4.01
4381 4682 9.889128 ATTTTATTTGGGTTGTCATAATTCCTG 57.111 29.630 0.00 0.00 0.00 3.86
4432 4733 4.916183 ACGGAGGGAGTATATACCAGTAC 58.084 47.826 9.32 0.00 0.00 2.73
4441 4742 6.811634 TTATTTTGGAACGGAGGGAGTATA 57.188 37.500 0.00 0.00 0.00 1.47
4442 4743 5.703730 TTATTTTGGAACGGAGGGAGTAT 57.296 39.130 0.00 0.00 0.00 2.12
4443 4744 5.247862 GTTTATTTTGGAACGGAGGGAGTA 58.752 41.667 0.00 0.00 0.00 2.59
4444 4745 4.077108 GTTTATTTTGGAACGGAGGGAGT 58.923 43.478 0.00 0.00 0.00 3.85
4445 4746 3.442625 GGTTTATTTTGGAACGGAGGGAG 59.557 47.826 0.00 0.00 0.00 4.30
4446 4747 3.074836 AGGTTTATTTTGGAACGGAGGGA 59.925 43.478 0.00 0.00 0.00 4.20
4447 4748 3.427573 AGGTTTATTTTGGAACGGAGGG 58.572 45.455 0.00 0.00 0.00 4.30
4448 4749 4.332828 AGAGGTTTATTTTGGAACGGAGG 58.667 43.478 0.00 0.00 0.00 4.30
4449 4750 5.472137 TCAAGAGGTTTATTTTGGAACGGAG 59.528 40.000 0.00 0.00 0.00 4.63
4450 4751 5.378332 TCAAGAGGTTTATTTTGGAACGGA 58.622 37.500 0.00 0.00 0.00 4.69
4451 4752 5.240844 ACTCAAGAGGTTTATTTTGGAACGG 59.759 40.000 1.73 0.00 0.00 4.44
4452 4753 6.017440 TGACTCAAGAGGTTTATTTTGGAACG 60.017 38.462 1.73 0.00 0.00 3.95
4453 4754 7.272037 TGACTCAAGAGGTTTATTTTGGAAC 57.728 36.000 1.73 0.00 0.00 3.62
4454 4755 7.944554 AGATGACTCAAGAGGTTTATTTTGGAA 59.055 33.333 1.73 0.00 0.00 3.53
4455 4756 7.461749 AGATGACTCAAGAGGTTTATTTTGGA 58.538 34.615 1.73 0.00 0.00 3.53
4456 4757 7.693969 AGATGACTCAAGAGGTTTATTTTGG 57.306 36.000 1.73 0.00 0.00 3.28
4461 4762 9.401058 CCAAAATAGATGACTCAAGAGGTTTAT 57.599 33.333 1.73 0.00 0.00 1.40
4462 4763 8.602424 TCCAAAATAGATGACTCAAGAGGTTTA 58.398 33.333 1.73 0.00 0.00 2.01
4463 4764 7.461749 TCCAAAATAGATGACTCAAGAGGTTT 58.538 34.615 1.73 0.00 0.00 3.27
4464 4765 7.020827 TCCAAAATAGATGACTCAAGAGGTT 57.979 36.000 1.73 0.00 0.00 3.50
4465 4766 6.627087 TCCAAAATAGATGACTCAAGAGGT 57.373 37.500 1.73 0.00 0.00 3.85
4466 4767 6.036517 CGTTCCAAAATAGATGACTCAAGAGG 59.963 42.308 1.73 0.00 0.00 3.69
4467 4768 6.036517 CCGTTCCAAAATAGATGACTCAAGAG 59.963 42.308 0.00 0.00 0.00 2.85
4468 4769 5.874810 CCGTTCCAAAATAGATGACTCAAGA 59.125 40.000 0.00 0.00 0.00 3.02
4469 4770 5.874810 TCCGTTCCAAAATAGATGACTCAAG 59.125 40.000 0.00 0.00 0.00 3.02
4470 4771 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
4471 4772 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4472 4773 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
4473 4774 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
4474 4775 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4475 4776 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4476 4777 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4477 4778 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4478 4779 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4479 4780 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4480 4781 8.674925 ATATATACTCCCTCCGTTCCAAAATA 57.325 34.615 0.00 0.00 0.00 1.40
4481 4782 5.906772 ATATACTCCCTCCGTTCCAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
4482 4783 6.555738 TGATATATACTCCCTCCGTTCCAAAA 59.444 38.462 0.00 0.00 0.00 2.44
4483 4784 6.079336 TGATATATACTCCCTCCGTTCCAAA 58.921 40.000 0.00 0.00 0.00 3.28
4484 4785 5.647230 TGATATATACTCCCTCCGTTCCAA 58.353 41.667 0.00 0.00 0.00 3.53
4485 4786 5.222275 ACTGATATATACTCCCTCCGTTCCA 60.222 44.000 0.00 0.00 0.00 3.53
4486 4787 5.262804 ACTGATATATACTCCCTCCGTTCC 58.737 45.833 0.00 0.00 0.00 3.62
4487 4788 6.318396 GGTACTGATATATACTCCCTCCGTTC 59.682 46.154 0.00 0.00 0.00 3.95
4488 4789 6.011805 AGGTACTGATATATACTCCCTCCGTT 60.012 42.308 0.00 0.00 37.18 4.44
4489 4790 5.491800 AGGTACTGATATATACTCCCTCCGT 59.508 44.000 0.00 0.00 37.18 4.69
4490 4791 6.003859 AGGTACTGATATATACTCCCTCCG 57.996 45.833 0.00 0.00 37.18 4.63
4491 4792 8.504409 ACATAGGTACTGATATATACTCCCTCC 58.496 40.741 0.00 0.00 41.52 4.30
4492 4793 9.344772 CACATAGGTACTGATATATACTCCCTC 57.655 40.741 0.00 0.00 41.52 4.30
4493 4794 8.847816 ACACATAGGTACTGATATATACTCCCT 58.152 37.037 0.00 0.00 41.52 4.20
4494 4795 9.476928 AACACATAGGTACTGATATATACTCCC 57.523 37.037 0.00 0.00 41.52 4.30
4500 4801 9.535170 AGCTACAACACATAGGTACTGATATAT 57.465 33.333 0.00 0.00 41.52 0.86
4501 4802 8.935614 AGCTACAACACATAGGTACTGATATA 57.064 34.615 0.00 0.00 41.52 0.86
4502 4803 7.841282 AGCTACAACACATAGGTACTGATAT 57.159 36.000 0.00 0.00 41.52 1.63
4503 4804 7.417456 CCAAGCTACAACACATAGGTACTGATA 60.417 40.741 0.00 0.00 41.52 2.15
4504 4805 6.341316 CAAGCTACAACACATAGGTACTGAT 58.659 40.000 0.00 0.00 41.52 2.90
4505 4806 5.337250 CCAAGCTACAACACATAGGTACTGA 60.337 44.000 0.00 0.00 41.52 3.41
4506 4807 4.870426 CCAAGCTACAACACATAGGTACTG 59.130 45.833 0.00 0.00 41.52 2.74
4507 4808 4.530946 ACCAAGCTACAACACATAGGTACT 59.469 41.667 0.00 0.00 46.37 2.73
4508 4809 4.828829 ACCAAGCTACAACACATAGGTAC 58.171 43.478 0.00 0.00 30.31 3.34
4509 4810 6.608539 TTACCAAGCTACAACACATAGGTA 57.391 37.500 0.00 0.00 30.31 3.08
4544 4845 5.049267 GGCAACAAGGTATCGTTTTCAGTTA 60.049 40.000 0.00 0.00 0.00 2.24
4772 5073 4.030452 GGACGACGGACGAACGGT 62.030 66.667 6.90 3.44 45.77 4.83
4989 5290 3.932089 GACCAAGTTGAAAGCAGCAAAAA 59.068 39.130 3.87 0.00 0.00 1.94
4990 5291 3.520569 GACCAAGTTGAAAGCAGCAAAA 58.479 40.909 3.87 0.00 0.00 2.44
4991 5292 2.159114 GGACCAAGTTGAAAGCAGCAAA 60.159 45.455 3.87 0.00 0.00 3.68
4992 5293 1.408702 GGACCAAGTTGAAAGCAGCAA 59.591 47.619 3.87 0.00 0.00 3.91
5098 5411 9.907229 CCAACTTATAGGGAAAACTAAGAGAAT 57.093 33.333 0.00 0.00 0.00 2.40
5099 5412 8.887393 ACCAACTTATAGGGAAAACTAAGAGAA 58.113 33.333 0.00 0.00 0.00 2.87
5101 5414 9.516546 AAACCAACTTATAGGGAAAACTAAGAG 57.483 33.333 0.00 0.00 0.00 2.85
5131 5444 7.228706 TGCCTTTTCGTTAAGAAGAAGAGAATT 59.771 33.333 7.12 0.00 40.40 2.17
5148 5494 0.167689 GCAAGAGCTCTGCCTTTTCG 59.832 55.000 19.06 0.00 37.91 3.46
5155 5501 0.456312 GCAACATGCAAGAGCTCTGC 60.456 55.000 19.06 21.72 44.26 4.26
5168 5514 5.118286 CCAAGTTTTCCTTTCAAGCAACAT 58.882 37.500 0.00 0.00 0.00 2.71
5176 5523 2.946990 GACGGACCAAGTTTTCCTTTCA 59.053 45.455 0.00 0.00 0.00 2.69
5283 5642 2.051518 CGAGCAGAGAGAGGGCTGT 61.052 63.158 0.00 0.00 38.15 4.40
5284 5643 2.784356 CCGAGCAGAGAGAGGGCTG 61.784 68.421 0.00 0.00 38.15 4.85
5285 5644 2.441901 CCGAGCAGAGAGAGGGCT 60.442 66.667 0.00 0.00 41.35 5.19
5288 5647 2.826287 TCGCCGAGCAGAGAGAGG 60.826 66.667 0.00 0.00 0.00 3.69
5298 5657 2.807045 GAGTGTGTGCTCGCCGAG 60.807 66.667 10.36 10.36 0.00 4.63
5299 5658 3.295273 AGAGTGTGTGCTCGCCGA 61.295 61.111 0.00 0.00 40.26 5.54
5304 5663 2.219674 CGTTTCTTCAGAGTGTGTGCTC 59.780 50.000 0.00 0.00 35.82 4.26
5305 5664 2.159099 TCGTTTCTTCAGAGTGTGTGCT 60.159 45.455 0.00 0.00 0.00 4.40
5306 5665 2.201732 TCGTTTCTTCAGAGTGTGTGC 58.798 47.619 0.00 0.00 0.00 4.57
5312 5694 3.637229 TCCTTGTCTCGTTTCTTCAGAGT 59.363 43.478 0.00 0.00 33.96 3.24
5339 5721 2.798262 GCAGAACTTTGCGCTGCG 60.798 61.111 19.17 19.17 44.52 5.18
5411 5795 0.755686 AGGGAGTAGTATGCAGCAGC 59.244 55.000 0.00 0.00 42.57 5.25
5422 5806 8.051535 TCTTATATTATGGTACCGAGGGAGTAG 58.948 40.741 7.57 0.00 0.00 2.57
5423 5807 7.831193 GTCTTATATTATGGTACCGAGGGAGTA 59.169 40.741 7.57 0.00 0.00 2.59
5425 5809 6.183360 CGTCTTATATTATGGTACCGAGGGAG 60.183 46.154 7.57 0.00 0.00 4.30
5426 5810 5.649395 CGTCTTATATTATGGTACCGAGGGA 59.351 44.000 7.57 0.00 0.00 4.20
5427 5811 5.416952 ACGTCTTATATTATGGTACCGAGGG 59.583 44.000 7.57 0.00 0.00 4.30
5428 5812 6.506500 ACGTCTTATATTATGGTACCGAGG 57.493 41.667 7.57 3.36 0.00 4.63
5429 5813 8.807667 AAAACGTCTTATATTATGGTACCGAG 57.192 34.615 7.57 0.00 0.00 4.63
5430 5814 9.033481 CAAAAACGTCTTATATTATGGTACCGA 57.967 33.333 7.57 0.00 0.00 4.69
5431 5815 7.795272 GCAAAAACGTCTTATATTATGGTACCG 59.205 37.037 7.57 0.00 0.00 4.02
5432 5816 8.614346 TGCAAAAACGTCTTATATTATGGTACC 58.386 33.333 4.43 4.43 0.00 3.34
5433 5817 9.646336 CTGCAAAAACGTCTTATATTATGGTAC 57.354 33.333 0.00 0.00 0.00 3.34
5434 5818 9.386010 ACTGCAAAAACGTCTTATATTATGGTA 57.614 29.630 0.00 0.00 0.00 3.25
5435 5819 8.276252 ACTGCAAAAACGTCTTATATTATGGT 57.724 30.769 0.00 0.00 0.00 3.55
5443 5827 9.522804 TCAAATTTAACTGCAAAAACGTCTTAT 57.477 25.926 0.00 0.00 0.00 1.73
5444 5828 8.912787 TCAAATTTAACTGCAAAAACGTCTTA 57.087 26.923 0.00 0.00 0.00 2.10
5445 5829 7.820044 TCAAATTTAACTGCAAAAACGTCTT 57.180 28.000 0.00 0.00 0.00 3.01
5446 5830 7.544217 AGTTCAAATTTAACTGCAAAAACGTCT 59.456 29.630 10.38 0.00 35.87 4.18
5447 5831 7.630606 CAGTTCAAATTTAACTGCAAAAACGTC 59.369 33.333 18.80 0.00 45.15 4.34
5448 5832 7.452231 CAGTTCAAATTTAACTGCAAAAACGT 58.548 30.769 18.80 0.00 45.15 3.99
5449 5833 7.859891 CAGTTCAAATTTAACTGCAAAAACG 57.140 32.000 18.80 0.00 45.15 3.60
5458 5842 7.589574 ACGTTTTTGCAGTTCAAATTTAACT 57.410 28.000 0.00 0.00 43.53 2.24
5459 5843 8.648422 AAACGTTTTTGCAGTTCAAATTTAAC 57.352 26.923 7.96 0.00 43.53 2.01
5469 5853 9.699703 ACCATAATATAAAACGTTTTTGCAGTT 57.300 25.926 29.42 18.54 0.00 3.16
5472 5856 9.570488 GGTACCATAATATAAAACGTTTTTGCA 57.430 29.630 29.42 13.85 0.00 4.08
5473 5857 8.735837 CGGTACCATAATATAAAACGTTTTTGC 58.264 33.333 29.42 12.57 0.00 3.68
5474 5858 9.985318 TCGGTACCATAATATAAAACGTTTTTG 57.015 29.630 29.42 19.75 0.00 2.44
5476 5860 8.829612 CCTCGGTACCATAATATAAAACGTTTT 58.170 33.333 27.65 27.65 0.00 2.43
5477 5861 7.442062 CCCTCGGTACCATAATATAAAACGTTT 59.558 37.037 13.54 7.96 0.00 3.60
5478 5862 6.930722 CCCTCGGTACCATAATATAAAACGTT 59.069 38.462 13.54 0.00 0.00 3.99
5479 5863 6.267471 TCCCTCGGTACCATAATATAAAACGT 59.733 38.462 13.54 0.00 0.00 3.99
5480 5864 6.690530 TCCCTCGGTACCATAATATAAAACG 58.309 40.000 13.54 0.00 0.00 3.60
5481 5865 7.674120 ACTCCCTCGGTACCATAATATAAAAC 58.326 38.462 13.54 0.00 0.00 2.43
5482 5866 7.860649 ACTCCCTCGGTACCATAATATAAAA 57.139 36.000 13.54 0.00 0.00 1.52
5483 5867 8.393259 TCTACTCCCTCGGTACCATAATATAAA 58.607 37.037 13.54 0.00 0.00 1.40
5484 5868 7.932134 TCTACTCCCTCGGTACCATAATATAA 58.068 38.462 13.54 0.00 0.00 0.98
5485 5869 7.515004 TCTACTCCCTCGGTACCATAATATA 57.485 40.000 13.54 0.00 0.00 0.86
5486 5870 6.398655 TCTACTCCCTCGGTACCATAATAT 57.601 41.667 13.54 0.00 0.00 1.28
5487 5871 5.848286 TCTACTCCCTCGGTACCATAATA 57.152 43.478 13.54 0.00 0.00 0.98
5488 5872 4.736611 TCTACTCCCTCGGTACCATAAT 57.263 45.455 13.54 0.00 0.00 1.28
5489 5873 4.736611 ATCTACTCCCTCGGTACCATAA 57.263 45.455 13.54 0.00 0.00 1.90
5490 5874 4.404640 CAATCTACTCCCTCGGTACCATA 58.595 47.826 13.54 0.00 0.00 2.74
5491 5875 3.231818 CAATCTACTCCCTCGGTACCAT 58.768 50.000 13.54 0.00 0.00 3.55
5492 5876 2.662866 CAATCTACTCCCTCGGTACCA 58.337 52.381 13.54 0.00 0.00 3.25
5493 5877 1.340568 GCAATCTACTCCCTCGGTACC 59.659 57.143 0.16 0.16 0.00 3.34
5494 5878 2.029623 TGCAATCTACTCCCTCGGTAC 58.970 52.381 0.00 0.00 0.00 3.34
5495 5879 2.429610 GTTGCAATCTACTCCCTCGGTA 59.570 50.000 0.59 0.00 0.00 4.02
5496 5880 1.207329 GTTGCAATCTACTCCCTCGGT 59.793 52.381 0.59 0.00 0.00 4.69
5497 5881 1.482593 AGTTGCAATCTACTCCCTCGG 59.517 52.381 0.59 0.00 0.00 4.63
5498 5882 2.166459 TCAGTTGCAATCTACTCCCTCG 59.834 50.000 0.59 0.00 0.00 4.63
5499 5883 3.196685 AGTCAGTTGCAATCTACTCCCTC 59.803 47.826 0.59 0.00 0.00 4.30
5500 5884 3.177228 AGTCAGTTGCAATCTACTCCCT 58.823 45.455 0.59 0.00 0.00 4.20
5501 5885 3.526534 GAGTCAGTTGCAATCTACTCCC 58.473 50.000 19.45 0.25 0.00 4.30
5502 5886 3.526534 GGAGTCAGTTGCAATCTACTCC 58.473 50.000 27.25 27.25 44.36 3.85
5503 5887 3.929610 GTGGAGTCAGTTGCAATCTACTC 59.070 47.826 20.91 20.91 34.08 2.59
5504 5888 3.324846 TGTGGAGTCAGTTGCAATCTACT 59.675 43.478 0.59 6.32 0.00 2.57
5505 5889 3.664107 TGTGGAGTCAGTTGCAATCTAC 58.336 45.455 0.59 4.42 0.00 2.59
5509 5893 3.256631 GGAATTGTGGAGTCAGTTGCAAT 59.743 43.478 0.59 0.00 0.00 3.56
5565 5949 2.284995 GCTCCCCTGGACTGGACT 60.285 66.667 0.00 0.00 0.00 3.85
5566 5950 3.775654 CGCTCCCCTGGACTGGAC 61.776 72.222 0.00 0.00 0.00 4.02
5568 5952 3.775654 GTCGCTCCCCTGGACTGG 61.776 72.222 0.00 0.00 0.00 4.00
5570 5954 2.997897 GTGTCGCTCCCCTGGACT 60.998 66.667 0.00 0.00 0.00 3.85
5571 5955 4.436998 CGTGTCGCTCCCCTGGAC 62.437 72.222 0.00 0.00 0.00 4.02
5577 5961 4.373116 TTCAGCCGTGTCGCTCCC 62.373 66.667 0.00 0.00 36.82 4.30
5578 5962 3.112709 GTTCAGCCGTGTCGCTCC 61.113 66.667 0.00 0.00 36.82 4.70
5579 5963 3.470567 CGTTCAGCCGTGTCGCTC 61.471 66.667 0.00 0.00 36.82 5.03
5589 5973 4.077188 GTGCTCCGTGCGTTCAGC 62.077 66.667 0.00 0.00 46.63 4.26
5590 5974 2.661537 TGTGCTCCGTGCGTTCAG 60.662 61.111 0.00 0.00 46.63 3.02
5591 5975 2.964925 GTGTGCTCCGTGCGTTCA 60.965 61.111 0.00 0.00 46.63 3.18
5592 5976 2.943345 CTGTGTGCTCCGTGCGTTC 61.943 63.158 0.00 0.00 46.63 3.95
5593 5977 2.967076 CTGTGTGCTCCGTGCGTT 60.967 61.111 0.00 0.00 46.63 4.84
5634 6018 8.019656 TCTTCACTACTTTTCTGTTAGGTTCT 57.980 34.615 0.00 0.00 0.00 3.01
5639 6023 7.564988 CGGTTTCTTCACTACTTTTCTGTTAG 58.435 38.462 0.00 0.00 0.00 2.34
5663 6047 0.238289 ACAGGCGTTTTCATTCAGCG 59.762 50.000 0.00 0.00 0.00 5.18
5667 6051 3.471495 AATCGACAGGCGTTTTCATTC 57.529 42.857 0.00 0.00 41.80 2.67
5669 6053 3.564511 CAAAATCGACAGGCGTTTTCAT 58.435 40.909 5.17 0.00 40.05 2.57
5684 6068 4.526770 GCCATGGCAGCCAAAATC 57.473 55.556 32.08 4.33 36.95 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.