Multiple sequence alignment - TraesCS2D01G500500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G500500 chr2D 100.000 5054 0 0 1 5054 595156831 595161884 0.000000e+00 9334.0
1 TraesCS2D01G500500 chr2D 79.401 267 40 12 23 286 546780292 546780546 1.870000e-39 174.0
2 TraesCS2D01G500500 chr2A 88.054 4127 315 68 936 4971 729289434 729293473 0.000000e+00 4726.0
3 TraesCS2D01G500500 chr2A 87.606 589 71 2 1517 2105 72567261 72566675 0.000000e+00 682.0
4 TraesCS2D01G500500 chr2A 88.259 494 47 7 1038 1520 72604121 72603628 9.430000e-162 580.0
5 TraesCS2D01G500500 chr2B 88.628 3104 286 24 1006 4047 722625882 722628980 0.000000e+00 3714.0
6 TraesCS2D01G500500 chr2B 88.690 893 85 11 1222 2105 31121735 31122620 0.000000e+00 1075.0
7 TraesCS2D01G500500 chr2B 88.112 715 54 15 4361 5054 722629622 722630326 0.000000e+00 821.0
8 TraesCS2D01G500500 chr2B 80.083 482 66 16 20 488 722624500 722624964 1.050000e-86 331.0
9 TraesCS2D01G500500 chr4B 88.537 410 37 8 1219 1619 478186511 478186103 5.880000e-134 488.0
10 TraesCS2D01G500500 chr5D 79.225 284 45 11 7 287 283013521 283013249 8.640000e-43 185.0
11 TraesCS2D01G500500 chr5D 100.000 45 0 0 488 532 357547332 357547376 3.240000e-12 84.2
12 TraesCS2D01G500500 chr3A 78.893 289 48 8 1 287 16154347 16154624 3.110000e-42 183.0
13 TraesCS2D01G500500 chr7A 78.231 294 50 8 3 293 166657173 166656891 5.200000e-40 176.0
14 TraesCS2D01G500500 chr1A 78.521 284 49 10 3 285 24582296 24582024 5.200000e-40 176.0
15 TraesCS2D01G500500 chr6A 77.931 290 54 6 5 293 554781937 554781657 6.730000e-39 172.0
16 TraesCS2D01G500500 chr6A 84.810 158 21 3 3 159 28668670 28668825 6.770000e-34 156.0
17 TraesCS2D01G500500 chr5B 86.624 157 16 5 4 158 551461498 551461651 8.700000e-38 169.0
18 TraesCS2D01G500500 chr3B 85.455 165 21 3 3 165 425723251 425723088 8.700000e-38 169.0
19 TraesCS2D01G500500 chrUn 100.000 45 0 0 488 532 225927999 225927955 3.240000e-12 84.2
20 TraesCS2D01G500500 chrUn 100.000 45 0 0 488 532 229500698 229500654 3.240000e-12 84.2
21 TraesCS2D01G500500 chr7D 100.000 45 0 0 488 532 203515222 203515178 3.240000e-12 84.2
22 TraesCS2D01G500500 chr4D 100.000 45 0 0 488 532 123716175 123716131 3.240000e-12 84.2
23 TraesCS2D01G500500 chr1D 100.000 45 0 0 488 532 141313390 141313434 3.240000e-12 84.2
24 TraesCS2D01G500500 chr1B 100.000 45 0 0 488 532 70279044 70279000 3.240000e-12 84.2
25 TraesCS2D01G500500 chr1B 100.000 45 0 0 488 532 638700920 638700964 3.240000e-12 84.2
26 TraesCS2D01G500500 chr1B 100.000 45 0 0 488 532 668805415 668805459 3.240000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G500500 chr2D 595156831 595161884 5053 False 9334 9334 100.000000 1 5054 1 chr2D.!!$F2 5053
1 TraesCS2D01G500500 chr2A 729289434 729293473 4039 False 4726 4726 88.054000 936 4971 1 chr2A.!!$F1 4035
2 TraesCS2D01G500500 chr2A 72566675 72567261 586 True 682 682 87.606000 1517 2105 1 chr2A.!!$R1 588
3 TraesCS2D01G500500 chr2B 722624500 722630326 5826 False 1622 3714 85.607667 20 5054 3 chr2B.!!$F2 5034
4 TraesCS2D01G500500 chr2B 31121735 31122620 885 False 1075 1075 88.690000 1222 2105 1 chr2B.!!$F1 883

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 325 0.031178 ACCTTTTGAGCAGCTTTGCG 59.969 50.0 0.00 0.00 40.27 4.85 F
521 532 0.107945 CTCAGGAAGGCTTTCTCGGG 60.108 60.0 4.67 0.00 33.68 5.14 F
970 1416 0.109723 TTGGCGCTACCCTTGAACTT 59.890 50.0 7.64 0.00 37.83 2.66 F
972 1418 0.321298 GGCGCTACCCTTGAACTTGA 60.321 55.0 7.64 0.00 0.00 3.02 F
1720 2222 0.461548 CTGCCGAGGCTATTGTGAGA 59.538 55.0 15.75 0.00 42.51 3.27 F
3278 3795 0.244994 ATGAGGCTCACACTGACGTC 59.755 55.0 21.37 9.11 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2253 2770 0.319900 ATGAGCACCACTGTGTCGAC 60.320 55.0 9.11 9.11 44.65 4.20 R
2387 2904 0.109342 CCTTCCAGTTGGTGCAGTCT 59.891 55.0 0.00 0.00 36.34 3.24 R
2669 3186 0.600255 GGCCCCGTATGAATGACTCG 60.600 60.0 0.00 0.00 0.00 4.18 R
2753 3270 0.745845 CAGGAGCACCCAAGGAATCG 60.746 60.0 0.00 0.00 37.41 3.34 R
3603 4136 0.040514 CAACCATGCACGCTTTTCGA 60.041 50.0 0.00 0.00 41.67 3.71 R
4130 4701 0.459934 ACCGACGACGAAACAACCAA 60.460 50.0 9.28 0.00 42.66 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.234908 AGAGACGGCAAGAACTTATGCT 59.765 45.455 0.00 0.00 42.20 3.79
30 31 2.191400 AGAACTTATGCTGGAGCTCCA 58.809 47.619 33.04 33.04 45.30 3.86
41 42 1.899814 TGGAGCTCCATCAACTACGTT 59.100 47.619 32.00 0.00 42.01 3.99
44 45 3.430929 GGAGCTCCATCAACTACGTTCAT 60.431 47.826 28.43 0.00 35.64 2.57
57 58 3.861276 ACGTTCATATGGACGAACTCA 57.139 42.857 36.91 0.00 39.49 3.41
58 59 4.182693 ACGTTCATATGGACGAACTCAA 57.817 40.909 36.91 3.66 39.49 3.02
72 73 0.827368 ACTCAAGGAGGATCGAAGCC 59.173 55.000 0.00 0.00 34.37 4.35
86 87 2.032426 TCGAAGCCCGAAAAACAAACTC 59.968 45.455 0.00 0.00 45.43 3.01
96 97 5.677178 CCGAAAAACAAACTCGAAGAAGAAG 59.323 40.000 0.00 0.00 34.09 2.85
98 99 3.861569 AACAAACTCGAAGAAGAAGCG 57.138 42.857 0.00 0.00 34.09 4.68
100 101 1.136224 CAAACTCGAAGAAGAAGCGCC 60.136 52.381 2.29 0.00 34.09 6.53
125 126 2.805546 GTCCAGACGCCGCATCTA 59.194 61.111 0.00 0.00 0.00 1.98
129 130 1.655654 CAGACGCCGCATCTACGAG 60.656 63.158 0.00 0.00 34.06 4.18
130 131 2.353607 GACGCCGCATCTACGAGG 60.354 66.667 0.00 0.00 34.06 4.63
161 162 9.440773 AAAAACCCTAACCTAAACTACTAATCG 57.559 33.333 0.00 0.00 0.00 3.34
162 163 7.961326 AACCCTAACCTAAACTACTAATCGA 57.039 36.000 0.00 0.00 0.00 3.59
164 165 8.005192 ACCCTAACCTAAACTACTAATCGAAG 57.995 38.462 0.00 0.00 0.00 3.79
165 166 7.069208 ACCCTAACCTAAACTACTAATCGAAGG 59.931 40.741 0.00 0.00 0.00 3.46
166 167 6.922407 CCTAACCTAAACTACTAATCGAAGGC 59.078 42.308 0.00 0.00 0.00 4.35
167 168 6.541934 AACCTAAACTACTAATCGAAGGCT 57.458 37.500 0.00 0.00 0.00 4.58
168 169 6.146601 ACCTAAACTACTAATCGAAGGCTC 57.853 41.667 0.00 0.00 0.00 4.70
169 170 5.213675 CCTAAACTACTAATCGAAGGCTCG 58.786 45.833 0.00 0.00 46.87 5.03
170 171 3.712091 AACTACTAATCGAAGGCTCGG 57.288 47.619 0.00 0.00 45.49 4.63
171 172 2.928334 ACTACTAATCGAAGGCTCGGA 58.072 47.619 0.00 0.00 45.49 4.55
172 173 2.879646 ACTACTAATCGAAGGCTCGGAG 59.120 50.000 0.00 0.00 45.49 4.63
173 174 1.765230 ACTAATCGAAGGCTCGGAGT 58.235 50.000 6.90 0.66 45.49 3.85
174 175 1.405821 ACTAATCGAAGGCTCGGAGTG 59.594 52.381 6.90 0.00 45.49 3.51
181 182 0.321996 AAGGCTCGGAGTGAAGGAAC 59.678 55.000 6.90 0.00 0.00 3.62
183 184 1.446272 GCTCGGAGTGAAGGAACCG 60.446 63.158 6.90 0.00 45.61 4.44
184 185 1.446272 CTCGGAGTGAAGGAACCGC 60.446 63.158 0.00 0.00 44.19 5.68
194 195 2.271173 GGAACCGCGATTCCCCTT 59.729 61.111 22.47 0.00 42.16 3.95
197 198 2.253403 GAACCGCGATTCCCCTTCCT 62.253 60.000 8.23 0.00 0.00 3.36
198 199 2.203070 CCGCGATTCCCCTTCCTG 60.203 66.667 8.23 0.00 0.00 3.86
199 200 2.897350 CGCGATTCCCCTTCCTGC 60.897 66.667 0.00 0.00 0.00 4.85
201 202 2.998097 CGATTCCCCTTCCTGCCA 59.002 61.111 0.00 0.00 0.00 4.92
202 203 1.452108 CGATTCCCCTTCCTGCCAC 60.452 63.158 0.00 0.00 0.00 5.01
204 205 1.213296 GATTCCCCTTCCTGCCACTA 58.787 55.000 0.00 0.00 0.00 2.74
206 207 1.562672 TTCCCCTTCCTGCCACTAGC 61.563 60.000 0.00 0.00 44.14 3.42
207 208 1.997874 CCCCTTCCTGCCACTAGCT 60.998 63.158 0.00 0.00 44.23 3.32
208 209 0.691078 CCCCTTCCTGCCACTAGCTA 60.691 60.000 0.00 0.00 44.23 3.32
209 210 0.466124 CCCTTCCTGCCACTAGCTAC 59.534 60.000 0.00 0.00 44.23 3.58
222 224 2.818132 GCTACTGGAGCGGCTGAT 59.182 61.111 7.50 0.00 42.62 2.90
226 228 2.166829 CTACTGGAGCGGCTGATAGAT 58.833 52.381 7.50 0.00 0.00 1.98
239 241 2.830923 CTGATAGATGGGAGGCGAATCT 59.169 50.000 0.00 0.00 34.99 2.40
241 243 3.764434 TGATAGATGGGAGGCGAATCTAC 59.236 47.826 0.00 0.00 36.12 2.59
257 259 1.272490 TCTACGGGCTCACTGACAAAG 59.728 52.381 0.00 0.00 0.00 2.77
262 264 3.312404 GCTCACTGACAAAGCCTGA 57.688 52.632 0.00 0.00 0.00 3.86
264 266 2.157738 GCTCACTGACAAAGCCTGAAT 58.842 47.619 0.00 0.00 0.00 2.57
265 267 2.095364 GCTCACTGACAAAGCCTGAATG 60.095 50.000 0.00 0.00 0.00 2.67
267 269 2.106338 TCACTGACAAAGCCTGAATGGA 59.894 45.455 0.00 0.00 38.35 3.41
268 270 3.087031 CACTGACAAAGCCTGAATGGAT 58.913 45.455 0.00 0.00 38.35 3.41
276 278 3.446442 AGCCTGAATGGATGAGTTTGT 57.554 42.857 0.00 0.00 38.35 2.83
287 289 1.810030 GAGTTTGTCCTAGCCGCCG 60.810 63.158 0.00 0.00 0.00 6.46
289 291 1.153429 GTTTGTCCTAGCCGCCGAT 60.153 57.895 0.00 0.00 0.00 4.18
309 311 6.113411 CCGATGGACTATAAGACAAACCTTT 58.887 40.000 0.00 0.00 0.00 3.11
310 312 6.598064 CCGATGGACTATAAGACAAACCTTTT 59.402 38.462 0.00 0.00 0.00 2.27
312 314 7.333423 CGATGGACTATAAGACAAACCTTTTGA 59.667 37.037 5.67 0.00 0.00 2.69
316 318 7.361286 GGACTATAAGACAAACCTTTTGAGCAG 60.361 40.741 5.67 0.00 0.00 4.24
323 325 0.031178 ACCTTTTGAGCAGCTTTGCG 59.969 50.000 0.00 0.00 40.27 4.85
337 339 2.030946 GCTTTGCGCTAGTAATGAGGTG 59.969 50.000 9.73 0.00 35.14 4.00
338 340 1.651987 TTGCGCTAGTAATGAGGTGC 58.348 50.000 9.73 0.00 35.99 5.01
341 343 1.870167 GCGCTAGTAATGAGGTGCCTC 60.870 57.143 11.13 11.13 43.01 4.70
350 352 1.059584 TGAGGTGCCTCAGTTCCCAA 61.060 55.000 16.28 0.00 46.80 4.12
351 353 0.322008 GAGGTGCCTCAGTTCCCAAG 60.322 60.000 13.00 0.00 42.31 3.61
353 355 1.228245 GTGCCTCAGTTCCCAAGCA 60.228 57.895 0.00 0.00 0.00 3.91
373 375 3.504863 CATTGAAAAGCACCCGATGAAG 58.495 45.455 0.00 0.00 0.00 3.02
375 377 2.426522 TGAAAAGCACCCGATGAAGAG 58.573 47.619 0.00 0.00 0.00 2.85
385 387 3.336997 ACCCGATGAAGAGGATATAGGGA 59.663 47.826 8.35 0.00 38.56 4.20
388 390 5.426833 CCCGATGAAGAGGATATAGGGATTT 59.573 44.000 0.00 0.00 38.56 2.17
396 398 9.799106 GAAGAGGATATAGGGATTTGATTTTCA 57.201 33.333 0.00 0.00 0.00 2.69
399 401 8.414629 AGGATATAGGGATTTGATTTTCAAGC 57.585 34.615 0.00 0.00 37.70 4.01
464 472 4.469657 TGTTGGCATGTTTAAAGGAGAGT 58.530 39.130 0.00 0.00 0.00 3.24
465 473 5.626142 TGTTGGCATGTTTAAAGGAGAGTA 58.374 37.500 0.00 0.00 0.00 2.59
466 474 6.245408 TGTTGGCATGTTTAAAGGAGAGTAT 58.755 36.000 0.00 0.00 0.00 2.12
469 477 8.560374 GTTGGCATGTTTAAAGGAGAGTATATC 58.440 37.037 0.00 0.00 0.00 1.63
472 483 6.369065 GCATGTTTAAAGGAGAGTATATCGGG 59.631 42.308 0.00 0.00 0.00 5.14
479 490 3.077695 AGGAGAGTATATCGGGACCCATT 59.922 47.826 12.15 0.00 0.00 3.16
488 499 1.832219 GGGACCCATTACGTACCCC 59.168 63.158 5.33 2.05 0.00 4.95
490 501 1.206878 GGACCCATTACGTACCCCTT 58.793 55.000 0.00 0.00 0.00 3.95
491 502 1.561076 GGACCCATTACGTACCCCTTT 59.439 52.381 0.00 0.00 0.00 3.11
492 503 2.025981 GGACCCATTACGTACCCCTTTT 60.026 50.000 0.00 0.00 0.00 2.27
493 504 3.561960 GGACCCATTACGTACCCCTTTTT 60.562 47.826 0.00 0.00 0.00 1.94
494 505 3.689347 ACCCATTACGTACCCCTTTTTC 58.311 45.455 0.00 0.00 0.00 2.29
495 506 3.331591 ACCCATTACGTACCCCTTTTTCT 59.668 43.478 0.00 0.00 0.00 2.52
496 507 4.202599 ACCCATTACGTACCCCTTTTTCTT 60.203 41.667 0.00 0.00 0.00 2.52
497 508 4.768448 CCCATTACGTACCCCTTTTTCTTT 59.232 41.667 0.00 0.00 0.00 2.52
498 509 5.336134 CCCATTACGTACCCCTTTTTCTTTG 60.336 44.000 0.00 0.00 0.00 2.77
499 510 5.474189 CCATTACGTACCCCTTTTTCTTTGA 59.526 40.000 0.00 0.00 0.00 2.69
500 511 6.016108 CCATTACGTACCCCTTTTTCTTTGAA 60.016 38.462 0.00 0.00 0.00 2.69
501 512 7.309560 CCATTACGTACCCCTTTTTCTTTGAAT 60.310 37.037 0.00 0.00 0.00 2.57
502 513 5.700722 ACGTACCCCTTTTTCTTTGAATC 57.299 39.130 0.00 0.00 0.00 2.52
503 514 5.382616 ACGTACCCCTTTTTCTTTGAATCT 58.617 37.500 0.00 0.00 0.00 2.40
504 515 5.472478 ACGTACCCCTTTTTCTTTGAATCTC 59.528 40.000 0.00 0.00 0.00 2.75
505 516 5.472137 CGTACCCCTTTTTCTTTGAATCTCA 59.528 40.000 0.00 0.00 0.00 3.27
506 517 6.348540 CGTACCCCTTTTTCTTTGAATCTCAG 60.349 42.308 0.00 0.00 0.00 3.35
507 518 4.835056 ACCCCTTTTTCTTTGAATCTCAGG 59.165 41.667 0.00 0.00 0.00 3.86
508 519 5.079643 CCCCTTTTTCTTTGAATCTCAGGA 58.920 41.667 0.00 0.00 0.00 3.86
509 520 5.539955 CCCCTTTTTCTTTGAATCTCAGGAA 59.460 40.000 0.00 0.00 0.00 3.36
510 521 6.294955 CCCCTTTTTCTTTGAATCTCAGGAAG 60.295 42.308 0.00 0.00 0.00 3.46
511 522 6.294955 CCCTTTTTCTTTGAATCTCAGGAAGG 60.295 42.308 0.00 0.00 0.00 3.46
512 523 5.712152 TTTTCTTTGAATCTCAGGAAGGC 57.288 39.130 0.00 0.00 0.00 4.35
513 524 4.647564 TTCTTTGAATCTCAGGAAGGCT 57.352 40.909 0.00 0.00 0.00 4.58
514 525 4.647564 TCTTTGAATCTCAGGAAGGCTT 57.352 40.909 0.00 0.00 0.00 4.35
515 526 4.990526 TCTTTGAATCTCAGGAAGGCTTT 58.009 39.130 0.00 0.00 0.00 3.51
516 527 5.006386 TCTTTGAATCTCAGGAAGGCTTTC 58.994 41.667 0.00 0.00 0.00 2.62
517 528 4.647564 TTGAATCTCAGGAAGGCTTTCT 57.352 40.909 0.98 0.98 33.68 2.52
518 529 4.213564 TGAATCTCAGGAAGGCTTTCTC 57.786 45.455 4.67 0.00 33.68 2.87
519 530 2.977772 ATCTCAGGAAGGCTTTCTCG 57.022 50.000 4.67 1.92 33.68 4.04
520 531 0.898320 TCTCAGGAAGGCTTTCTCGG 59.102 55.000 4.67 1.49 33.68 4.63
521 532 0.107945 CTCAGGAAGGCTTTCTCGGG 60.108 60.000 4.67 0.00 33.68 5.14
522 533 1.078143 CAGGAAGGCTTTCTCGGGG 60.078 63.158 4.67 0.00 33.68 5.73
523 534 1.229529 AGGAAGGCTTTCTCGGGGA 60.230 57.895 0.98 0.00 33.68 4.81
524 535 1.222113 GGAAGGCTTTCTCGGGGAG 59.778 63.158 8.61 0.00 33.68 4.30
525 536 1.265454 GGAAGGCTTTCTCGGGGAGA 61.265 60.000 8.61 0.00 36.86 3.71
526 537 0.613777 GAAGGCTTTCTCGGGGAGAA 59.386 55.000 0.00 4.04 45.45 2.87
532 543 3.067011 TTCTCGGGGAGAAAGCTGA 57.933 52.632 5.63 0.00 44.37 4.26
550 561 5.295950 AGCTGAGCATGCTAACTACTTATG 58.704 41.667 22.74 0.00 39.21 1.90
551 562 4.450419 GCTGAGCATGCTAACTACTTATGG 59.550 45.833 22.74 0.00 0.00 2.74
563 574 6.724893 AACTACTTATGGTTTTGGTTTGCT 57.275 33.333 0.00 0.00 0.00 3.91
571 582 2.167487 GGTTTTGGTTTGCTCTTGGTCA 59.833 45.455 0.00 0.00 0.00 4.02
577 588 3.960102 TGGTTTGCTCTTGGTCAGAAAAT 59.040 39.130 0.00 0.00 0.00 1.82
580 591 5.279156 GGTTTGCTCTTGGTCAGAAAATCAT 60.279 40.000 0.00 0.00 0.00 2.45
587 598 7.244886 TCTTGGTCAGAAAATCATGTCTCTA 57.755 36.000 0.00 0.00 0.00 2.43
592 603 8.708378 TGGTCAGAAAATCATGTCTCTATATGT 58.292 33.333 0.00 0.00 0.00 2.29
593 604 8.986847 GGTCAGAAAATCATGTCTCTATATGTG 58.013 37.037 0.00 0.00 0.00 3.21
594 605 9.755804 GTCAGAAAATCATGTCTCTATATGTGA 57.244 33.333 0.00 0.00 0.00 3.58
599 610 9.499479 AAAATCATGTCTCTATATGTGATGTCC 57.501 33.333 0.00 0.00 0.00 4.02
600 611 8.433249 AATCATGTCTCTATATGTGATGTCCT 57.567 34.615 0.00 0.00 0.00 3.85
601 612 7.224522 TCATGTCTCTATATGTGATGTCCTG 57.775 40.000 0.00 0.00 0.00 3.86
602 613 6.210185 TCATGTCTCTATATGTGATGTCCTGG 59.790 42.308 0.00 0.00 0.00 4.45
603 614 5.705400 TGTCTCTATATGTGATGTCCTGGA 58.295 41.667 0.00 0.00 0.00 3.86
604 615 6.136155 TGTCTCTATATGTGATGTCCTGGAA 58.864 40.000 0.00 0.00 0.00 3.53
605 616 6.611236 TGTCTCTATATGTGATGTCCTGGAAA 59.389 38.462 0.00 0.00 0.00 3.13
606 617 7.125659 TGTCTCTATATGTGATGTCCTGGAAAA 59.874 37.037 0.00 0.00 0.00 2.29
607 618 7.655328 GTCTCTATATGTGATGTCCTGGAAAAG 59.345 40.741 0.00 0.00 0.00 2.27
608 619 7.565029 TCTCTATATGTGATGTCCTGGAAAAGA 59.435 37.037 0.00 0.00 0.00 2.52
609 620 8.089625 TCTATATGTGATGTCCTGGAAAAGAA 57.910 34.615 0.00 0.00 0.00 2.52
610 621 8.548025 TCTATATGTGATGTCCTGGAAAAGAAA 58.452 33.333 0.00 0.00 0.00 2.52
611 622 5.972107 ATGTGATGTCCTGGAAAAGAAAG 57.028 39.130 0.00 0.00 0.00 2.62
612 623 4.792068 TGTGATGTCCTGGAAAAGAAAGT 58.208 39.130 0.00 0.00 0.00 2.66
629 640 4.103153 AGAAAGTGATGTCCTGAAGGTGAA 59.897 41.667 0.00 0.00 36.34 3.18
634 645 3.390967 TGATGTCCTGAAGGTGAAGTGAA 59.609 43.478 0.00 0.00 36.34 3.18
635 646 3.924114 TGTCCTGAAGGTGAAGTGAAA 57.076 42.857 0.00 0.00 36.34 2.69
660 679 2.038426 ACATCATTCCAGTGTCGTTGGA 59.962 45.455 0.00 0.00 42.81 3.53
661 680 2.455674 TCATTCCAGTGTCGTTGGAG 57.544 50.000 0.00 0.00 45.00 3.86
664 683 3.767131 TCATTCCAGTGTCGTTGGAGATA 59.233 43.478 0.00 0.00 45.00 1.98
669 688 3.108881 CAGTGTCGTTGGAGATATGACG 58.891 50.000 0.00 0.00 34.90 4.35
677 696 5.050490 CGTTGGAGATATGACGGATTCTTT 58.950 41.667 0.00 0.00 32.29 2.52
682 701 7.338710 TGGAGATATGACGGATTCTTTTCTTT 58.661 34.615 0.00 0.00 0.00 2.52
684 703 7.713073 GGAGATATGACGGATTCTTTTCTTTCT 59.287 37.037 0.00 0.00 0.00 2.52
685 704 9.751542 GAGATATGACGGATTCTTTTCTTTCTA 57.248 33.333 0.00 0.00 0.00 2.10
688 707 7.979444 ATGACGGATTCTTTTCTTTCTAACA 57.021 32.000 0.00 0.00 0.00 2.41
689 708 7.979444 TGACGGATTCTTTTCTTTCTAACAT 57.021 32.000 0.00 0.00 0.00 2.71
691 710 8.504005 TGACGGATTCTTTTCTTTCTAACATTC 58.496 33.333 0.00 0.00 0.00 2.67
693 712 7.447238 ACGGATTCTTTTCTTTCTAACATTCCA 59.553 33.333 0.00 0.00 0.00 3.53
694 713 7.750903 CGGATTCTTTTCTTTCTAACATTCCAC 59.249 37.037 0.00 0.00 0.00 4.02
695 714 8.576442 GGATTCTTTTCTTTCTAACATTCCACA 58.424 33.333 0.00 0.00 0.00 4.17
697 716 9.918630 ATTCTTTTCTTTCTAACATTCCACATG 57.081 29.630 0.00 0.00 0.00 3.21
703 722 8.722480 TCTTTCTAACATTCCACATGATGTAG 57.278 34.615 0.00 0.00 0.00 2.74
708 727 9.987272 TCTAACATTCCACATGATGTAGATAAG 57.013 33.333 0.00 0.00 0.00 1.73
711 730 8.899427 ACATTCCACATGATGTAGATAAGAAG 57.101 34.615 0.00 0.00 0.00 2.85
713 732 8.986847 CATTCCACATGATGTAGATAAGAAGTC 58.013 37.037 0.00 0.00 0.00 3.01
714 733 6.739112 TCCACATGATGTAGATAAGAAGTCG 58.261 40.000 0.00 0.00 0.00 4.18
715 734 5.403766 CCACATGATGTAGATAAGAAGTCGC 59.596 44.000 0.00 0.00 0.00 5.19
716 735 5.403766 CACATGATGTAGATAAGAAGTCGCC 59.596 44.000 0.00 0.00 0.00 5.54
717 736 5.069119 ACATGATGTAGATAAGAAGTCGCCA 59.931 40.000 0.00 0.00 0.00 5.69
718 737 5.791336 TGATGTAGATAAGAAGTCGCCAT 57.209 39.130 0.00 0.00 0.00 4.40
747 767 6.038714 GCCTCCTTCGATATTCTTCAAACATT 59.961 38.462 0.00 0.00 0.00 2.71
748 768 7.634522 CCTCCTTCGATATTCTTCAAACATTC 58.365 38.462 0.00 0.00 0.00 2.67
749 769 7.280876 CCTCCTTCGATATTCTTCAAACATTCA 59.719 37.037 0.00 0.00 0.00 2.57
750 770 8.737168 TCCTTCGATATTCTTCAAACATTCAT 57.263 30.769 0.00 0.00 0.00 2.57
751 771 9.177608 TCCTTCGATATTCTTCAAACATTCATT 57.822 29.630 0.00 0.00 0.00 2.57
752 772 9.793252 CCTTCGATATTCTTCAAACATTCATTT 57.207 29.630 0.00 0.00 0.00 2.32
760 780 7.945033 TCTTCAAACATTCATTTAACCAAGC 57.055 32.000 0.00 0.00 0.00 4.01
761 781 7.495901 TCTTCAAACATTCATTTAACCAAGCA 58.504 30.769 0.00 0.00 0.00 3.91
762 782 8.149647 TCTTCAAACATTCATTTAACCAAGCAT 58.850 29.630 0.00 0.00 0.00 3.79
763 783 7.887996 TCAAACATTCATTTAACCAAGCATC 57.112 32.000 0.00 0.00 0.00 3.91
764 784 7.440198 TCAAACATTCATTTAACCAAGCATCA 58.560 30.769 0.00 0.00 0.00 3.07
765 785 7.930325 TCAAACATTCATTTAACCAAGCATCAA 59.070 29.630 0.00 0.00 0.00 2.57
766 786 7.656707 AACATTCATTTAACCAAGCATCAAC 57.343 32.000 0.00 0.00 0.00 3.18
767 787 6.996509 ACATTCATTTAACCAAGCATCAACT 58.003 32.000 0.00 0.00 0.00 3.16
768 788 6.869913 ACATTCATTTAACCAAGCATCAACTG 59.130 34.615 0.00 0.00 0.00 3.16
769 789 6.647334 TTCATTTAACCAAGCATCAACTGA 57.353 33.333 0.00 0.00 0.00 3.41
770 790 6.258230 TCATTTAACCAAGCATCAACTGAG 57.742 37.500 0.00 0.00 0.00 3.35
771 791 5.183713 TCATTTAACCAAGCATCAACTGAGG 59.816 40.000 0.00 0.00 0.00 3.86
772 792 2.957402 AACCAAGCATCAACTGAGGA 57.043 45.000 0.00 0.00 0.00 3.71
773 793 2.486472 ACCAAGCATCAACTGAGGAG 57.514 50.000 0.00 0.00 0.00 3.69
774 794 1.980765 ACCAAGCATCAACTGAGGAGA 59.019 47.619 0.00 0.00 0.00 3.71
775 795 2.373169 ACCAAGCATCAACTGAGGAGAA 59.627 45.455 0.00 0.00 0.00 2.87
776 796 3.181440 ACCAAGCATCAACTGAGGAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
777 797 4.015084 CCAAGCATCAACTGAGGAGAAAT 58.985 43.478 0.00 0.00 0.00 2.17
778 798 4.142447 CCAAGCATCAACTGAGGAGAAATG 60.142 45.833 0.00 0.00 0.00 2.32
779 799 3.618351 AGCATCAACTGAGGAGAAATGG 58.382 45.455 0.00 0.00 0.00 3.16
780 800 3.009916 AGCATCAACTGAGGAGAAATGGT 59.990 43.478 0.00 0.00 0.00 3.55
781 801 3.128242 GCATCAACTGAGGAGAAATGGTG 59.872 47.826 0.00 0.00 0.00 4.17
782 802 3.423539 TCAACTGAGGAGAAATGGTGG 57.576 47.619 0.00 0.00 0.00 4.61
783 803 1.815003 CAACTGAGGAGAAATGGTGGC 59.185 52.381 0.00 0.00 0.00 5.01
784 804 1.067295 ACTGAGGAGAAATGGTGGCA 58.933 50.000 0.00 0.00 0.00 4.92
785 805 1.637553 ACTGAGGAGAAATGGTGGCAT 59.362 47.619 0.00 0.00 0.00 4.40
786 806 2.846206 ACTGAGGAGAAATGGTGGCATA 59.154 45.455 0.00 0.00 0.00 3.14
787 807 3.209410 CTGAGGAGAAATGGTGGCATAC 58.791 50.000 0.00 0.00 0.00 2.39
788 808 2.846206 TGAGGAGAAATGGTGGCATACT 59.154 45.455 0.00 0.00 0.00 2.12
789 809 3.266772 TGAGGAGAAATGGTGGCATACTT 59.733 43.478 0.00 0.00 0.00 2.24
790 810 3.879892 GAGGAGAAATGGTGGCATACTTC 59.120 47.826 0.00 0.00 0.00 3.01
791 811 2.952310 GGAGAAATGGTGGCATACTTCC 59.048 50.000 0.00 0.00 0.00 3.46
792 812 3.372025 GGAGAAATGGTGGCATACTTCCT 60.372 47.826 0.00 0.00 0.00 3.36
793 813 3.879892 GAGAAATGGTGGCATACTTCCTC 59.120 47.826 0.00 0.00 0.00 3.71
794 814 3.525199 AGAAATGGTGGCATACTTCCTCT 59.475 43.478 0.00 0.00 0.00 3.69
795 815 3.287867 AATGGTGGCATACTTCCTCTG 57.712 47.619 0.00 0.00 0.00 3.35
796 816 1.656587 TGGTGGCATACTTCCTCTGT 58.343 50.000 0.00 0.00 0.00 3.41
797 817 1.985159 TGGTGGCATACTTCCTCTGTT 59.015 47.619 0.00 0.00 0.00 3.16
798 818 2.375174 TGGTGGCATACTTCCTCTGTTT 59.625 45.455 0.00 0.00 0.00 2.83
799 819 3.181434 TGGTGGCATACTTCCTCTGTTTT 60.181 43.478 0.00 0.00 0.00 2.43
800 820 3.826729 GGTGGCATACTTCCTCTGTTTTT 59.173 43.478 0.00 0.00 0.00 1.94
801 821 5.007682 GGTGGCATACTTCCTCTGTTTTTA 58.992 41.667 0.00 0.00 0.00 1.52
802 822 5.475564 GGTGGCATACTTCCTCTGTTTTTAA 59.524 40.000 0.00 0.00 0.00 1.52
803 823 6.015772 GGTGGCATACTTCCTCTGTTTTTAAA 60.016 38.462 0.00 0.00 0.00 1.52
804 824 7.309805 GGTGGCATACTTCCTCTGTTTTTAAAT 60.310 37.037 0.00 0.00 0.00 1.40
805 825 8.736244 GTGGCATACTTCCTCTGTTTTTAAATA 58.264 33.333 0.00 0.00 0.00 1.40
806 826 9.303116 TGGCATACTTCCTCTGTTTTTAAATAA 57.697 29.630 0.00 0.00 0.00 1.40
807 827 9.788960 GGCATACTTCCTCTGTTTTTAAATAAG 57.211 33.333 0.00 0.00 0.00 1.73
878 898 6.780457 ACACATTTATTTTGAGATGGAGGG 57.220 37.500 0.00 0.00 0.00 4.30
879 899 6.493166 ACACATTTATTTTGAGATGGAGGGA 58.507 36.000 0.00 0.00 0.00 4.20
880 900 6.604795 ACACATTTATTTTGAGATGGAGGGAG 59.395 38.462 0.00 0.00 0.00 4.30
881 901 5.595952 ACATTTATTTTGAGATGGAGGGAGC 59.404 40.000 0.00 0.00 0.00 4.70
882 902 4.860802 TTATTTTGAGATGGAGGGAGCA 57.139 40.909 0.00 0.00 0.00 4.26
883 903 3.967467 ATTTTGAGATGGAGGGAGCAT 57.033 42.857 0.00 0.00 0.00 3.79
884 904 3.287867 TTTTGAGATGGAGGGAGCATC 57.712 47.619 0.00 0.00 0.00 3.91
885 905 2.187239 TTGAGATGGAGGGAGCATCT 57.813 50.000 0.00 0.00 38.27 2.90
886 906 1.421480 TGAGATGGAGGGAGCATCTG 58.579 55.000 0.00 0.00 35.99 2.90
887 907 1.062658 TGAGATGGAGGGAGCATCTGA 60.063 52.381 0.00 0.00 35.99 3.27
888 908 2.045524 GAGATGGAGGGAGCATCTGAA 58.954 52.381 0.00 0.00 35.99 3.02
889 909 2.638855 GAGATGGAGGGAGCATCTGAAT 59.361 50.000 0.00 0.00 35.99 2.57
890 910 3.837146 GAGATGGAGGGAGCATCTGAATA 59.163 47.826 0.00 0.00 35.99 1.75
891 911 4.437023 AGATGGAGGGAGCATCTGAATAT 58.563 43.478 0.00 0.00 34.72 1.28
892 912 4.470664 AGATGGAGGGAGCATCTGAATATC 59.529 45.833 0.00 0.00 34.72 1.63
893 913 3.866816 TGGAGGGAGCATCTGAATATCT 58.133 45.455 0.00 0.00 33.73 1.98
894 914 3.837146 TGGAGGGAGCATCTGAATATCTC 59.163 47.826 0.00 0.00 33.73 2.75
895 915 3.197549 GGAGGGAGCATCTGAATATCTCC 59.802 52.174 0.00 0.00 41.87 3.71
896 916 4.095946 GAGGGAGCATCTGAATATCTCCT 58.904 47.826 13.61 0.00 42.16 3.69
897 917 4.095946 AGGGAGCATCTGAATATCTCCTC 58.904 47.826 13.61 7.46 42.16 3.71
898 918 3.197549 GGGAGCATCTGAATATCTCCTCC 59.802 52.174 13.61 0.00 42.16 4.30
899 919 3.837146 GGAGCATCTGAATATCTCCTCCA 59.163 47.826 0.00 0.00 40.02 3.86
900 920 4.470664 GGAGCATCTGAATATCTCCTCCAT 59.529 45.833 0.00 0.00 40.02 3.41
901 921 5.045724 GGAGCATCTGAATATCTCCTCCATT 60.046 44.000 0.00 0.00 40.02 3.16
902 922 6.451292 AGCATCTGAATATCTCCTCCATTT 57.549 37.500 0.00 0.00 0.00 2.32
903 923 6.850234 AGCATCTGAATATCTCCTCCATTTT 58.150 36.000 0.00 0.00 0.00 1.82
904 924 6.715718 AGCATCTGAATATCTCCTCCATTTTG 59.284 38.462 0.00 0.00 0.00 2.44
905 925 6.072064 GCATCTGAATATCTCCTCCATTTTGG 60.072 42.308 0.00 0.00 39.43 3.28
906 926 6.581388 TCTGAATATCTCCTCCATTTTGGT 57.419 37.500 0.00 0.00 39.03 3.67
907 927 7.690454 TCTGAATATCTCCTCCATTTTGGTA 57.310 36.000 0.00 0.00 39.03 3.25
908 928 7.509546 TCTGAATATCTCCTCCATTTTGGTAC 58.490 38.462 0.00 0.00 39.03 3.34
909 929 6.288294 TGAATATCTCCTCCATTTTGGTACG 58.712 40.000 0.00 0.00 39.03 3.67
910 930 3.560636 ATCTCCTCCATTTTGGTACGG 57.439 47.619 0.00 0.00 39.03 4.02
911 931 2.542550 TCTCCTCCATTTTGGTACGGA 58.457 47.619 0.00 0.00 39.03 4.69
912 932 2.235402 TCTCCTCCATTTTGGTACGGAC 59.765 50.000 0.00 0.00 39.03 4.79
930 950 3.861341 CCAGTGGGTGAGTATGTGG 57.139 57.895 0.00 0.00 0.00 4.17
931 951 0.984230 CCAGTGGGTGAGTATGTGGT 59.016 55.000 0.00 0.00 0.00 4.16
932 952 1.351017 CCAGTGGGTGAGTATGTGGTT 59.649 52.381 0.00 0.00 0.00 3.67
933 953 2.569853 CCAGTGGGTGAGTATGTGGTTA 59.430 50.000 0.00 0.00 0.00 2.85
934 954 3.596214 CAGTGGGTGAGTATGTGGTTAC 58.404 50.000 0.00 0.00 0.00 2.50
940 1386 4.331717 GGGTGAGTATGTGGTTACATTTCG 59.668 45.833 0.00 0.00 45.01 3.46
946 1392 6.177610 AGTATGTGGTTACATTTCGGTCAAT 58.822 36.000 0.00 0.00 45.01 2.57
968 1414 0.887387 TGTTGGCGCTACCCTTGAAC 60.887 55.000 7.64 0.00 37.83 3.18
969 1415 0.605589 GTTGGCGCTACCCTTGAACT 60.606 55.000 7.64 0.00 37.83 3.01
970 1416 0.109723 TTGGCGCTACCCTTGAACTT 59.890 50.000 7.64 0.00 37.83 2.66
971 1417 0.605319 TGGCGCTACCCTTGAACTTG 60.605 55.000 7.64 0.00 37.83 3.16
972 1418 0.321298 GGCGCTACCCTTGAACTTGA 60.321 55.000 7.64 0.00 0.00 3.02
973 1419 1.519408 GCGCTACCCTTGAACTTGAA 58.481 50.000 0.00 0.00 0.00 2.69
977 1423 2.553247 GCTACCCTTGAACTTGAAGCCT 60.553 50.000 0.00 0.00 0.00 4.58
1002 1448 3.483922 CAGCTCTCGTAGAAAGCGTAATG 59.516 47.826 0.00 0.00 34.09 1.90
1004 1450 3.858238 GCTCTCGTAGAAAGCGTAATGTT 59.142 43.478 0.00 0.00 34.09 2.71
1031 1507 1.117150 AACATACTATCCGCCACCGT 58.883 50.000 0.00 0.00 0.00 4.83
1160 1637 1.222113 GGGGCGAGGAAGAAGAAGG 59.778 63.158 0.00 0.00 0.00 3.46
1167 1644 2.115427 GAGGAAGAAGAAGGGGAGGAG 58.885 57.143 0.00 0.00 0.00 3.69
1418 1907 2.692741 GGAACCCCCTCCTCCCTG 60.693 72.222 0.00 0.00 32.21 4.45
1436 1936 2.177531 CGCAGCAATGCACTCACC 59.822 61.111 8.35 0.00 34.41 4.02
1451 1951 1.517257 CACCGTCTTAGCCTGCTCG 60.517 63.158 0.00 0.00 0.00 5.03
1720 2222 0.461548 CTGCCGAGGCTATTGTGAGA 59.538 55.000 15.75 0.00 42.51 3.27
1853 2358 7.716799 ATCTTGAATTTTAGTTGTGCCCATA 57.283 32.000 0.00 0.00 0.00 2.74
1854 2359 7.531857 TCTTGAATTTTAGTTGTGCCCATAA 57.468 32.000 0.00 0.00 0.00 1.90
1855 2360 7.375053 TCTTGAATTTTAGTTGTGCCCATAAC 58.625 34.615 0.30 0.30 33.35 1.89
1886 2391 7.730364 TGTTTTCCTACTGAAGATTCTGAAC 57.270 36.000 6.48 1.14 33.63 3.18
2062 2578 7.704727 ACTGACTATATCTAGAACTGGGCTAT 58.295 38.462 0.00 0.00 0.00 2.97
2070 2586 1.486310 AGAACTGGGCTATCATCGCAA 59.514 47.619 0.00 0.00 0.00 4.85
2074 2590 2.899900 ACTGGGCTATCATCGCAATCTA 59.100 45.455 0.00 0.00 0.00 1.98
2219 2736 3.884774 ACCGGGTGCCAAGCAAGA 61.885 61.111 6.32 0.00 41.47 3.02
2244 2761 6.096846 AGTTTCAGAGCCAAGTAAATGTTTGT 59.903 34.615 0.00 0.00 0.00 2.83
2293 2810 2.036733 TGGTGAACTCCTGTAAAGTCGG 59.963 50.000 0.00 0.00 0.00 4.79
2335 2852 7.360185 GCAACAGGAGCTAGTTAGAAAAGTTAC 60.360 40.741 0.00 0.00 0.00 2.50
2338 2855 5.185442 AGGAGCTAGTTAGAAAAGTTACGCT 59.815 40.000 0.00 0.00 0.00 5.07
2375 2892 6.402222 AGTATGGAGCAAAGTTAGACTCTTG 58.598 40.000 0.00 0.00 0.00 3.02
2470 2987 5.607939 TTTAGGCTTACGATGGATCTTGA 57.392 39.130 0.00 0.00 0.00 3.02
2473 2990 4.384056 AGGCTTACGATGGATCTTGATTG 58.616 43.478 0.00 0.00 0.00 2.67
2534 3051 5.782893 TTTTTGGACAAACGGAATCTGAT 57.217 34.783 0.00 0.00 0.00 2.90
2535 3052 4.764679 TTTGGACAAACGGAATCTGATG 57.235 40.909 0.00 0.00 0.00 3.07
2590 3107 9.892130 AAACTCACCTTATTTATACAGGAAGAG 57.108 33.333 0.00 0.00 38.36 2.85
2614 3131 0.644380 AGTGATCTGGAGGGGGATGA 59.356 55.000 0.00 0.00 0.00 2.92
2657 3174 4.385825 ACGCTTTTGATCTTAGAACACCA 58.614 39.130 0.00 0.00 0.00 4.17
2666 3183 7.129457 TGATCTTAGAACACCAGATGCTATT 57.871 36.000 0.00 0.00 0.00 1.73
2667 3184 6.988580 TGATCTTAGAACACCAGATGCTATTG 59.011 38.462 0.00 0.00 0.00 1.90
2669 3186 6.341316 TCTTAGAACACCAGATGCTATTGTC 58.659 40.000 0.00 0.00 0.00 3.18
2683 3200 4.976116 TGCTATTGTCGAGTCATTCATACG 59.024 41.667 0.00 0.00 0.00 3.06
2723 3240 4.371786 CTGCTATTGCTTCGGATGAACTA 58.628 43.478 0.00 0.00 40.48 2.24
2730 3247 6.662414 TTGCTTCGGATGAACTAAACATAG 57.338 37.500 0.00 0.00 0.00 2.23
2753 3270 7.388460 AGATTCATTTCTTGATGAGGTTCAC 57.612 36.000 0.00 0.00 37.35 3.18
2835 3352 0.543749 GACCTCAACAGGATCTGGGG 59.456 60.000 0.00 0.00 43.65 4.96
2861 3378 3.383825 AGGAGCATTTCTTTGATGATGGC 59.616 43.478 0.00 0.00 0.00 4.40
2895 3412 4.682860 CAGATGGAACTGCATTTGTTGAAC 59.317 41.667 0.00 0.00 0.00 3.18
2905 3422 6.154203 TGCATTTGTTGAACAATGTAAGGA 57.846 33.333 11.97 0.00 38.00 3.36
2914 3431 4.517075 TGAACAATGTAAGGACGCAATCAA 59.483 37.500 0.00 0.00 0.00 2.57
2963 3480 3.146066 CATGGAGTTCCGGTCTGAAAAA 58.854 45.455 0.00 0.00 39.43 1.94
3042 3559 4.444876 CCAACATATACTTCTCACCCCCAG 60.445 50.000 0.00 0.00 0.00 4.45
3095 3612 0.457035 ACTGTGTGCTTGTTTGGCAG 59.543 50.000 0.00 0.00 40.54 4.85
3278 3795 0.244994 ATGAGGCTCACACTGACGTC 59.755 55.000 21.37 9.11 0.00 4.34
3300 3817 2.917971 GACGAAGGTGAATCTGAAGTCG 59.082 50.000 0.00 0.00 0.00 4.18
3302 3819 2.917971 CGAAGGTGAATCTGAAGTCGAC 59.082 50.000 7.70 7.70 0.00 4.20
3304 3821 1.887198 AGGTGAATCTGAAGTCGACGT 59.113 47.619 10.46 6.85 0.00 4.34
3305 3822 1.986378 GGTGAATCTGAAGTCGACGTG 59.014 52.381 9.23 1.27 0.00 4.49
3309 3826 1.244816 ATCTGAAGTCGACGTGTCCA 58.755 50.000 9.23 0.00 0.00 4.02
3314 3831 0.529119 AAGTCGACGTGTCCACCAAC 60.529 55.000 10.46 0.00 0.00 3.77
3344 3861 1.818060 CATTTGACCCTTGCCATCGAA 59.182 47.619 0.00 0.00 0.00 3.71
3347 3864 0.400213 TGACCCTTGCCATCGAAGTT 59.600 50.000 0.00 0.00 0.00 2.66
3369 3886 1.348036 AGCCACCCTTTGAGTGAGTAC 59.652 52.381 0.00 0.00 37.42 2.73
3371 3888 2.565834 GCCACCCTTTGAGTGAGTACTA 59.434 50.000 0.00 0.00 37.25 1.82
3379 3896 6.295916 CCCTTTGAGTGAGTACTATTCCTGTT 60.296 42.308 0.00 0.00 37.25 3.16
3380 3897 6.591834 CCTTTGAGTGAGTACTATTCCTGTTG 59.408 42.308 0.00 0.00 37.25 3.33
3381 3898 5.073311 TGAGTGAGTACTATTCCTGTTGC 57.927 43.478 0.00 0.00 37.25 4.17
3385 3905 6.296026 AGTGAGTACTATTCCTGTTGCAAAA 58.704 36.000 0.00 0.00 34.74 2.44
3397 3930 6.060788 TCCTGTTGCAAAAATAAAAGGCATT 58.939 32.000 0.00 0.00 34.03 3.56
3398 3931 6.017275 TCCTGTTGCAAAAATAAAAGGCATTG 60.017 34.615 0.00 0.00 34.03 2.82
3403 3936 6.229733 TGCAAAAATAAAAGGCATTGCTAGT 58.770 32.000 8.82 0.00 42.59 2.57
3416 3949 4.378874 GCATTGCTAGTGGTTCTGTTTCTC 60.379 45.833 0.16 0.00 0.00 2.87
3441 3974 8.598916 TCACCATTTATCTACCTTTGTTACAGA 58.401 33.333 0.00 0.00 0.00 3.41
3453 3986 4.463050 TTGTTACAGATGGGAAGGGTTT 57.537 40.909 0.00 0.00 0.00 3.27
3454 3987 3.761897 TGTTACAGATGGGAAGGGTTTG 58.238 45.455 0.00 0.00 0.00 2.93
3456 3989 2.292828 ACAGATGGGAAGGGTTTGTG 57.707 50.000 0.00 0.00 0.00 3.33
3468 4001 1.603678 GGGTTTGTGCACATTGCTCTG 60.604 52.381 22.39 0.00 45.31 3.35
3490 4023 2.045536 GCTGGTTGGAGGAGCAGG 60.046 66.667 6.26 0.00 43.51 4.85
3499 4032 0.687354 GGAGGAGCAGGAACTTGTGA 59.313 55.000 0.00 0.00 34.60 3.58
3505 4038 0.957888 GCAGGAACTTGTGAGGAGCC 60.958 60.000 0.00 0.00 34.60 4.70
3517 4050 1.383803 AGGAGCCCTGGATCTGTCC 60.384 63.158 0.93 0.00 45.31 4.02
3526 4059 3.467776 GGATCTGTCCAGTCCAAGC 57.532 57.895 9.59 0.00 44.42 4.01
3543 4076 0.321122 AGCTGGAAGAACAAGCTCCG 60.321 55.000 0.00 0.00 34.07 4.63
3546 4079 2.870435 GCTGGAAGAACAAGCTCCGTTA 60.870 50.000 1.70 0.00 34.07 3.18
3585 4118 1.452833 GGCCATCAGGTTGCTCTCC 60.453 63.158 0.00 0.00 37.19 3.71
3586 4119 1.300963 GCCATCAGGTTGCTCTCCA 59.699 57.895 0.00 0.00 37.19 3.86
3599 4132 1.269517 GCTCTCCAACAGCGATCCTAG 60.270 57.143 0.00 0.00 0.00 3.02
3600 4133 0.747255 TCTCCAACAGCGATCCTAGC 59.253 55.000 0.00 0.00 0.00 3.42
3603 4136 0.179000 CCAACAGCGATCCTAGCCTT 59.821 55.000 0.00 0.00 34.64 4.35
3604 4137 1.576356 CAACAGCGATCCTAGCCTTC 58.424 55.000 0.00 0.00 34.64 3.46
3606 4139 0.752009 ACAGCGATCCTAGCCTTCGA 60.752 55.000 10.27 0.00 34.92 3.71
3609 4142 1.480954 AGCGATCCTAGCCTTCGAAAA 59.519 47.619 0.00 0.00 34.92 2.29
3654 4211 2.099921 CCCGTCATCCAGTAACTCTCTG 59.900 54.545 0.00 0.00 0.00 3.35
3681 4238 0.107654 GCCATAGGTCAACCTTCGCT 60.108 55.000 7.07 0.00 46.09 4.93
3691 4248 2.427453 TCAACCTTCGCTGAGATACTCC 59.573 50.000 0.00 0.00 0.00 3.85
3700 4257 3.429410 CGCTGAGATACTCCACAACATCA 60.429 47.826 0.00 0.00 0.00 3.07
3735 4292 2.895680 GAGGATGCGCTGAGGTCA 59.104 61.111 9.73 0.00 0.00 4.02
3759 4316 0.251386 AGCTCGTGGTCAAGGAGAGA 60.251 55.000 0.88 0.00 42.34 3.10
3813 4370 3.200593 CATCTCCCGCAGCAGCAC 61.201 66.667 0.82 0.00 42.27 4.40
3814 4371 4.827087 ATCTCCCGCAGCAGCACG 62.827 66.667 0.82 0.00 42.27 5.34
3878 4447 4.699257 GGAAGAGCTTCTTGACATGTTCAT 59.301 41.667 0.00 0.00 36.73 2.57
3936 4505 5.696724 CGATTTCAAGTCAAGGTTCTGTAGT 59.303 40.000 0.00 0.00 0.00 2.73
3985 4554 4.778415 TCGAGGCGCTGCTCGTTC 62.778 66.667 27.44 2.19 42.87 3.95
4047 4616 2.115052 TTGCACGGGAAGCATGGT 59.885 55.556 0.00 0.00 42.33 3.55
4052 4621 2.751436 CGGGAAGCATGGTGGGTG 60.751 66.667 0.00 0.00 0.00 4.61
4083 4654 1.540435 GCTCCCCCATTTTTGCCGAA 61.540 55.000 0.00 0.00 0.00 4.30
4103 4674 4.584394 GAACAGTTTTTCCTGTACACACG 58.416 43.478 0.00 0.00 44.74 4.49
4111 4682 1.487231 CTGTACACACGCTGCGAAC 59.513 57.895 30.47 17.00 0.00 3.95
4130 4701 3.049674 CGGTGTCCGTTGCAGCAT 61.050 61.111 0.00 0.00 42.73 3.79
4140 4718 1.522258 CGTTGCAGCATTGGTTGTTTC 59.478 47.619 0.00 0.00 0.00 2.78
4141 4719 1.522258 GTTGCAGCATTGGTTGTTTCG 59.478 47.619 0.00 0.00 0.00 3.46
4142 4720 0.743688 TGCAGCATTGGTTGTTTCGT 59.256 45.000 0.00 0.00 0.00 3.85
4143 4721 1.268999 TGCAGCATTGGTTGTTTCGTC 60.269 47.619 0.00 0.00 0.00 4.20
4144 4722 1.673760 CAGCATTGGTTGTTTCGTCG 58.326 50.000 0.00 0.00 0.00 5.12
4209 4787 3.479949 CGTGCTACGACGTAGGATAAAAC 59.520 47.826 30.51 17.40 46.05 2.43
4258 4844 0.521735 GAACGCAGGGCCAAAAGTAG 59.478 55.000 6.18 0.00 0.00 2.57
4398 5357 0.739462 CCCGACGCAAAGACATGCTA 60.739 55.000 0.00 0.00 44.21 3.49
4427 5386 2.243221 CAAAGGGGATGAAGGGATGACT 59.757 50.000 0.00 0.00 0.00 3.41
4436 5395 0.544357 AAGGGATGACTGTCCGTCCA 60.544 55.000 22.75 0.98 42.63 4.02
4506 5469 2.434185 TCAATGAGACACGCCGCC 60.434 61.111 0.00 0.00 0.00 6.13
4554 5522 2.817396 GGTCTTGCTCCGCTCTGC 60.817 66.667 0.00 0.00 0.00 4.26
4590 5558 2.435059 GTTGGAGAGGTCGCCTGC 60.435 66.667 2.98 0.00 36.72 4.85
4661 5629 5.702670 GCATCTTTCATTTCATATCCGGAGA 59.297 40.000 11.34 5.47 0.00 3.71
4678 5655 3.403968 GGAGAGAAGGAACAAGGAACAC 58.596 50.000 0.00 0.00 0.00 3.32
4685 5662 6.126409 AGAAGGAACAAGGAACACATTGTAA 58.874 36.000 0.00 0.00 38.66 2.41
4686 5663 6.605594 AGAAGGAACAAGGAACACATTGTAAA 59.394 34.615 0.00 0.00 38.66 2.01
4687 5664 6.144078 AGGAACAAGGAACACATTGTAAAC 57.856 37.500 0.00 0.00 38.66 2.01
4711 5688 2.099405 TCTATCCGAGATGTGTGTGCA 58.901 47.619 0.00 0.00 0.00 4.57
4716 5693 1.395954 CCGAGATGTGTGTGCATTCTG 59.604 52.381 0.00 0.00 0.00 3.02
4717 5694 1.395954 CGAGATGTGTGTGCATTCTGG 59.604 52.381 0.00 0.00 0.00 3.86
4719 5696 0.171903 GATGTGTGTGCATTCTGGGC 59.828 55.000 0.00 0.00 0.00 5.36
4721 5698 2.672651 TGTGTGCATTCTGGGCGG 60.673 61.111 0.00 0.00 0.00 6.13
4727 5704 4.431131 CATTCTGGGCGGGGCAGT 62.431 66.667 0.00 0.00 0.00 4.40
4838 5833 1.658717 CGCGGCCACTAGAATCTCG 60.659 63.158 2.24 0.00 0.00 4.04
4852 5847 2.325583 ATCTCGCCCGCAATCTAAAA 57.674 45.000 0.00 0.00 0.00 1.52
4862 5857 6.531439 GCCCGCAATCTAAAATACTTATACG 58.469 40.000 0.00 0.00 0.00 3.06
4863 5858 6.531439 CCCGCAATCTAAAATACTTATACGC 58.469 40.000 0.00 0.00 0.00 4.42
4864 5859 6.367969 CCCGCAATCTAAAATACTTATACGCT 59.632 38.462 0.00 0.00 0.00 5.07
4865 5860 7.095355 CCCGCAATCTAAAATACTTATACGCTT 60.095 37.037 0.00 0.00 0.00 4.68
4866 5861 7.950496 CCGCAATCTAAAATACTTATACGCTTC 59.050 37.037 0.00 0.00 0.00 3.86
4867 5862 7.950496 CGCAATCTAAAATACTTATACGCTTCC 59.050 37.037 0.00 0.00 0.00 3.46
4868 5863 8.989980 GCAATCTAAAATACTTATACGCTTCCT 58.010 33.333 0.00 0.00 0.00 3.36
4872 5867 8.921205 TCTAAAATACTTATACGCTTCCTTCCT 58.079 33.333 0.00 0.00 0.00 3.36
4873 5868 9.543783 CTAAAATACTTATACGCTTCCTTCCTT 57.456 33.333 0.00 0.00 0.00 3.36
4875 5870 6.726490 ATACTTATACGCTTCCTTCCTTCA 57.274 37.500 0.00 0.00 0.00 3.02
4876 5871 5.416271 ACTTATACGCTTCCTTCCTTCAA 57.584 39.130 0.00 0.00 0.00 2.69
4877 5872 5.801380 ACTTATACGCTTCCTTCCTTCAAA 58.199 37.500 0.00 0.00 0.00 2.69
4878 5873 6.235664 ACTTATACGCTTCCTTCCTTCAAAA 58.764 36.000 0.00 0.00 0.00 2.44
4879 5874 6.148976 ACTTATACGCTTCCTTCCTTCAAAAC 59.851 38.462 0.00 0.00 0.00 2.43
4880 5875 1.954382 ACGCTTCCTTCCTTCAAAACC 59.046 47.619 0.00 0.00 0.00 3.27
4882 5877 2.287608 CGCTTCCTTCCTTCAAAACCAC 60.288 50.000 0.00 0.00 0.00 4.16
4885 5880 4.522789 GCTTCCTTCCTTCAAAACCACATA 59.477 41.667 0.00 0.00 0.00 2.29
4886 5881 5.335976 GCTTCCTTCCTTCAAAACCACATAG 60.336 44.000 0.00 0.00 0.00 2.23
4887 5882 5.576563 TCCTTCCTTCAAAACCACATAGA 57.423 39.130 0.00 0.00 0.00 1.98
4888 5883 6.139679 TCCTTCCTTCAAAACCACATAGAT 57.860 37.500 0.00 0.00 0.00 1.98
4889 5884 7.265599 TCCTTCCTTCAAAACCACATAGATA 57.734 36.000 0.00 0.00 0.00 1.98
4920 5915 4.933064 CGATCTCGCAGGTCGCCC 62.933 72.222 6.00 0.00 37.30 6.13
4971 5972 3.263503 CTCGTCCGCGTCCTTGTCA 62.264 63.158 4.92 0.00 39.49 3.58
4979 5980 0.249911 GCGTCCTTGTCAGGTGAGTT 60.250 55.000 0.00 0.00 41.69 3.01
4982 5983 2.557056 CGTCCTTGTCAGGTGAGTTCTA 59.443 50.000 0.00 0.00 41.69 2.10
4989 5990 2.557490 GTCAGGTGAGTTCTACGGACTT 59.443 50.000 0.00 0.00 0.00 3.01
5005 6006 2.031437 GGACTTCTCGATGCAATGCTTC 59.969 50.000 6.82 9.01 0.00 3.86
5006 6007 2.012673 ACTTCTCGATGCAATGCTTCC 58.987 47.619 14.28 0.00 30.42 3.46
5010 6011 0.175531 TCGATGCAATGCTTCCTCGA 59.824 50.000 14.28 14.56 33.23 4.04
5016 6017 2.093288 TGCAATGCTTCCTCGATTCTCT 60.093 45.455 6.82 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.349886 CAGCATAAGTTCTTGCCGTCTC 59.650 50.000 7.01 0.00 39.72 3.36
2 3 2.350522 CAGCATAAGTTCTTGCCGTCT 58.649 47.619 7.01 0.00 39.72 4.18
3 4 1.398390 CCAGCATAAGTTCTTGCCGTC 59.602 52.381 7.01 0.00 39.72 4.79
5 6 1.667724 CTCCAGCATAAGTTCTTGCCG 59.332 52.381 7.01 0.00 39.72 5.69
7 8 2.354199 GAGCTCCAGCATAAGTTCTTGC 59.646 50.000 0.87 3.16 45.16 4.01
9 10 2.573462 TGGAGCTCCAGCATAAGTTCTT 59.427 45.455 32.00 0.00 42.01 2.52
10 11 2.191400 TGGAGCTCCAGCATAAGTTCT 58.809 47.619 32.00 0.00 42.01 3.01
11 12 2.698855 TGGAGCTCCAGCATAAGTTC 57.301 50.000 32.00 0.96 42.01 3.01
21 22 1.557099 ACGTAGTTGATGGAGCTCCA 58.443 50.000 36.73 36.73 46.87 3.86
41 42 3.384789 CCTCCTTGAGTTCGTCCATATGA 59.615 47.826 3.65 0.00 0.00 2.15
44 45 3.095912 TCCTCCTTGAGTTCGTCCATA 57.904 47.619 0.00 0.00 0.00 2.74
57 58 1.381327 TCGGGCTTCGATCCTCCTT 60.381 57.895 4.51 0.00 43.74 3.36
58 59 2.279073 TCGGGCTTCGATCCTCCT 59.721 61.111 4.51 0.00 43.74 3.69
72 73 5.151632 TCTTCTTCGAGTTTGTTTTTCGG 57.848 39.130 0.00 0.00 35.21 4.30
86 87 3.854459 GGCGGCGCTTCTTCTTCG 61.854 66.667 32.30 0.00 0.00 3.79
109 110 2.805546 GTAGATGCGGCGTCTGGA 59.194 61.111 29.93 12.21 31.62 3.86
113 114 2.353607 CCTCGTAGATGCGGCGTC 60.354 66.667 14.27 14.27 33.89 5.19
114 115 2.827190 TCCTCGTAGATGCGGCGT 60.827 61.111 9.37 0.00 33.89 5.68
116 117 0.666913 TTAGTCCTCGTAGATGCGGC 59.333 55.000 0.00 0.00 33.89 6.53
139 140 7.069208 CCTTCGATTAGTAGTTTAGGTTAGGGT 59.931 40.741 0.00 0.00 0.00 4.34
160 161 1.153745 CCTTCACTCCGAGCCTTCG 60.154 63.158 0.00 0.00 46.29 3.79
161 162 0.608640 TTCCTTCACTCCGAGCCTTC 59.391 55.000 0.00 0.00 0.00 3.46
162 163 0.321996 GTTCCTTCACTCCGAGCCTT 59.678 55.000 0.00 0.00 0.00 4.35
164 165 1.079057 GGTTCCTTCACTCCGAGCC 60.079 63.158 0.00 0.00 0.00 4.70
165 166 1.446272 CGGTTCCTTCACTCCGAGC 60.446 63.158 0.00 0.00 44.86 5.03
166 167 1.446272 GCGGTTCCTTCACTCCGAG 60.446 63.158 6.63 0.00 44.86 4.63
167 168 2.654877 GCGGTTCCTTCACTCCGA 59.345 61.111 6.63 0.00 44.86 4.55
168 169 2.558554 ATCGCGGTTCCTTCACTCCG 62.559 60.000 6.13 0.00 44.86 4.63
169 170 0.391263 AATCGCGGTTCCTTCACTCC 60.391 55.000 6.13 0.00 0.00 3.85
170 171 1.000145 GAATCGCGGTTCCTTCACTC 59.000 55.000 21.47 0.00 0.00 3.51
171 172 0.391263 GGAATCGCGGTTCCTTCACT 60.391 55.000 37.77 0.00 43.49 3.41
172 173 1.366854 GGGAATCGCGGTTCCTTCAC 61.367 60.000 41.13 25.89 45.62 3.18
173 174 1.078708 GGGAATCGCGGTTCCTTCA 60.079 57.895 41.13 6.72 45.62 3.02
174 175 1.818363 GGGGAATCGCGGTTCCTTC 60.818 63.158 41.13 31.01 45.62 3.46
181 182 2.203070 CAGGAAGGGGAATCGCGG 60.203 66.667 6.13 0.00 0.00 6.46
183 184 2.517166 GGCAGGAAGGGGAATCGC 60.517 66.667 0.00 0.00 0.00 4.58
184 185 1.452108 GTGGCAGGAAGGGGAATCG 60.452 63.158 0.00 0.00 0.00 3.34
190 191 0.466124 GTAGCTAGTGGCAGGAAGGG 59.534 60.000 0.00 0.00 44.79 3.95
194 195 0.335019 TCCAGTAGCTAGTGGCAGGA 59.665 55.000 34.26 19.60 44.66 3.86
206 207 1.610363 TCTATCAGCCGCTCCAGTAG 58.390 55.000 0.00 0.00 0.00 2.57
207 208 1.889170 CATCTATCAGCCGCTCCAGTA 59.111 52.381 0.00 0.00 0.00 2.74
208 209 0.678395 CATCTATCAGCCGCTCCAGT 59.322 55.000 0.00 0.00 0.00 4.00
209 210 0.037512 CCATCTATCAGCCGCTCCAG 60.038 60.000 0.00 0.00 0.00 3.86
222 224 2.160205 CGTAGATTCGCCTCCCATCTA 58.840 52.381 0.00 0.00 0.00 1.98
226 228 2.131709 CCCGTAGATTCGCCTCCCA 61.132 63.158 0.00 0.00 0.00 4.37
239 241 0.320421 GCTTTGTCAGTGAGCCCGTA 60.320 55.000 0.00 0.00 0.00 4.02
241 243 3.257933 GCTTTGTCAGTGAGCCCG 58.742 61.111 0.00 0.00 0.00 6.13
257 259 2.424956 GGACAAACTCATCCATTCAGGC 59.575 50.000 0.00 0.00 37.29 4.85
262 264 3.682718 CGGCTAGGACAAACTCATCCATT 60.683 47.826 0.00 0.00 37.47 3.16
264 266 1.207089 CGGCTAGGACAAACTCATCCA 59.793 52.381 0.00 0.00 37.47 3.41
265 267 1.941325 CGGCTAGGACAAACTCATCC 58.059 55.000 0.00 0.00 34.98 3.51
267 269 0.107654 GGCGGCTAGGACAAACTCAT 60.108 55.000 0.00 0.00 0.00 2.90
268 270 1.295423 GGCGGCTAGGACAAACTCA 59.705 57.895 0.00 0.00 0.00 3.41
276 278 2.347691 TAGTCCATCGGCGGCTAGGA 62.348 60.000 7.21 8.63 0.00 2.94
287 289 8.561738 TCAAAAGGTTTGTCTTATAGTCCATC 57.438 34.615 0.98 0.00 0.00 3.51
289 291 6.430000 GCTCAAAAGGTTTGTCTTATAGTCCA 59.570 38.462 0.98 0.00 0.00 4.02
337 339 0.529378 CAATGCTTGGGAACTGAGGC 59.471 55.000 0.00 0.00 0.00 4.70
338 340 2.205022 TCAATGCTTGGGAACTGAGG 57.795 50.000 0.00 0.00 0.00 3.86
341 343 3.062042 GCTTTTCAATGCTTGGGAACTG 58.938 45.455 0.00 0.00 0.00 3.16
345 347 1.344114 GGTGCTTTTCAATGCTTGGGA 59.656 47.619 0.00 0.00 0.00 4.37
350 352 1.203052 CATCGGGTGCTTTTCAATGCT 59.797 47.619 0.00 0.00 0.00 3.79
351 353 1.202114 TCATCGGGTGCTTTTCAATGC 59.798 47.619 0.00 0.00 0.00 3.56
353 355 3.420893 TCTTCATCGGGTGCTTTTCAAT 58.579 40.909 0.00 0.00 0.00 2.57
360 362 2.088104 TATCCTCTTCATCGGGTGCT 57.912 50.000 0.00 0.00 0.00 4.40
361 363 3.118956 CCTATATCCTCTTCATCGGGTGC 60.119 52.174 0.00 0.00 0.00 5.01
365 367 6.155221 TCAAATCCCTATATCCTCTTCATCGG 59.845 42.308 0.00 0.00 0.00 4.18
373 375 8.518702 GCTTGAAAATCAAATCCCTATATCCTC 58.481 37.037 0.00 0.00 35.73 3.71
375 377 8.414629 AGCTTGAAAATCAAATCCCTATATCC 57.585 34.615 0.00 0.00 35.73 2.59
385 387 5.467735 GGAGTTGCAAGCTTGAAAATCAAAT 59.532 36.000 36.00 25.45 41.39 2.32
388 390 3.384146 TGGAGTTGCAAGCTTGAAAATCA 59.616 39.130 36.00 24.28 41.39 2.57
394 396 0.179009 AGCTGGAGTTGCAAGCTTGA 60.179 50.000 30.39 12.25 44.79 3.02
396 398 4.916358 AGCTGGAGTTGCAAGCTT 57.084 50.000 0.00 0.00 44.79 3.74
399 401 3.025924 TCCAAGCTGGAGTTGCAAG 57.974 52.632 0.00 0.00 42.67 4.01
419 427 2.399396 ACATGTTTGAAAAGACCGCG 57.601 45.000 0.00 0.00 0.00 6.46
456 464 2.449730 TGGGTCCCGATATACTCTCCTT 59.550 50.000 2.65 0.00 0.00 3.36
458 466 2.599408 TGGGTCCCGATATACTCTCC 57.401 55.000 2.65 0.00 0.00 3.71
459 467 4.096081 CGTAATGGGTCCCGATATACTCTC 59.904 50.000 2.65 0.00 0.00 3.20
464 472 4.016444 GGTACGTAATGGGTCCCGATATA 58.984 47.826 2.65 0.00 0.00 0.86
465 473 2.827921 GGTACGTAATGGGTCCCGATAT 59.172 50.000 2.65 0.00 0.00 1.63
466 474 2.238521 GGTACGTAATGGGTCCCGATA 58.761 52.381 2.65 0.00 0.00 2.92
469 477 1.442987 GGGTACGTAATGGGTCCCG 59.557 63.158 2.65 0.00 0.00 5.14
472 483 3.354948 AAAAGGGGTACGTAATGGGTC 57.645 47.619 0.00 0.00 0.00 4.46
479 490 6.536447 AGATTCAAAGAAAAAGGGGTACGTA 58.464 36.000 0.00 0.00 0.00 3.57
488 499 6.015603 AGCCTTCCTGAGATTCAAAGAAAAAG 60.016 38.462 0.00 0.00 0.00 2.27
490 501 5.388654 AGCCTTCCTGAGATTCAAAGAAAA 58.611 37.500 0.00 0.00 0.00 2.29
491 502 4.990526 AGCCTTCCTGAGATTCAAAGAAA 58.009 39.130 0.00 0.00 0.00 2.52
492 503 4.647564 AGCCTTCCTGAGATTCAAAGAA 57.352 40.909 0.00 0.00 0.00 2.52
493 504 4.647564 AAGCCTTCCTGAGATTCAAAGA 57.352 40.909 0.00 0.00 0.00 2.52
494 505 5.008980 AGAAAGCCTTCCTGAGATTCAAAG 58.991 41.667 0.00 0.00 31.28 2.77
495 506 4.990526 AGAAAGCCTTCCTGAGATTCAAA 58.009 39.130 0.00 0.00 31.28 2.69
496 507 4.583871 GAGAAAGCCTTCCTGAGATTCAA 58.416 43.478 0.00 0.00 31.28 2.69
497 508 3.368843 CGAGAAAGCCTTCCTGAGATTCA 60.369 47.826 0.00 0.00 31.28 2.57
498 509 3.194062 CGAGAAAGCCTTCCTGAGATTC 58.806 50.000 0.00 0.00 31.28 2.52
499 510 2.093235 CCGAGAAAGCCTTCCTGAGATT 60.093 50.000 0.00 0.00 31.28 2.40
500 511 1.484240 CCGAGAAAGCCTTCCTGAGAT 59.516 52.381 0.00 0.00 31.28 2.75
501 512 0.898320 CCGAGAAAGCCTTCCTGAGA 59.102 55.000 0.00 0.00 31.28 3.27
502 513 0.107945 CCCGAGAAAGCCTTCCTGAG 60.108 60.000 0.00 0.00 31.28 3.35
503 514 1.553690 CCCCGAGAAAGCCTTCCTGA 61.554 60.000 0.00 0.00 31.28 3.86
504 515 1.078143 CCCCGAGAAAGCCTTCCTG 60.078 63.158 0.00 0.00 31.28 3.86
505 516 1.229529 TCCCCGAGAAAGCCTTCCT 60.230 57.895 0.00 0.00 31.28 3.36
506 517 1.222113 CTCCCCGAGAAAGCCTTCC 59.778 63.158 0.00 0.00 31.28 3.46
507 518 0.613777 TTCTCCCCGAGAAAGCCTTC 59.386 55.000 1.62 0.00 44.37 3.46
508 519 2.773458 TTCTCCCCGAGAAAGCCTT 58.227 52.632 1.62 0.00 44.37 4.35
509 520 4.561155 TTCTCCCCGAGAAAGCCT 57.439 55.556 1.62 0.00 44.37 4.58
514 525 0.898320 CTCAGCTTTCTCCCCGAGAA 59.102 55.000 0.00 0.00 45.45 2.87
515 526 1.608717 GCTCAGCTTTCTCCCCGAGA 61.609 60.000 0.00 0.00 36.86 4.04
516 527 1.153469 GCTCAGCTTTCTCCCCGAG 60.153 63.158 0.00 0.00 0.00 4.63
517 528 1.267574 ATGCTCAGCTTTCTCCCCGA 61.268 55.000 0.00 0.00 0.00 5.14
518 529 1.094073 CATGCTCAGCTTTCTCCCCG 61.094 60.000 0.00 0.00 0.00 5.73
519 530 1.382692 GCATGCTCAGCTTTCTCCCC 61.383 60.000 11.37 0.00 0.00 4.81
520 531 0.394080 AGCATGCTCAGCTTTCTCCC 60.394 55.000 16.30 0.00 39.87 4.30
521 532 2.322355 TAGCATGCTCAGCTTTCTCC 57.678 50.000 26.57 0.00 43.25 3.71
522 533 3.269178 AGTTAGCATGCTCAGCTTTCTC 58.731 45.455 26.57 0.00 43.25 2.87
523 534 3.347077 AGTTAGCATGCTCAGCTTTCT 57.653 42.857 26.57 10.00 43.25 2.52
524 535 4.187694 AGTAGTTAGCATGCTCAGCTTTC 58.812 43.478 26.57 15.35 43.25 2.62
525 536 4.213564 AGTAGTTAGCATGCTCAGCTTT 57.786 40.909 26.57 7.82 43.25 3.51
526 537 3.902881 AGTAGTTAGCATGCTCAGCTT 57.097 42.857 26.57 9.28 43.25 3.74
527 538 3.902881 AAGTAGTTAGCATGCTCAGCT 57.097 42.857 26.57 21.34 45.77 4.24
528 539 4.450419 CCATAAGTAGTTAGCATGCTCAGC 59.550 45.833 26.57 15.28 0.00 4.26
529 540 5.605534 ACCATAAGTAGTTAGCATGCTCAG 58.394 41.667 26.57 0.15 0.00 3.35
530 541 5.614324 ACCATAAGTAGTTAGCATGCTCA 57.386 39.130 26.57 11.33 0.00 4.26
531 542 6.927294 AAACCATAAGTAGTTAGCATGCTC 57.073 37.500 26.57 11.32 0.00 4.26
532 543 6.095440 CCAAAACCATAAGTAGTTAGCATGCT 59.905 38.462 25.99 25.99 0.00 3.79
550 561 2.167487 TGACCAAGAGCAAACCAAAACC 59.833 45.455 0.00 0.00 0.00 3.27
551 562 3.130340 TCTGACCAAGAGCAAACCAAAAC 59.870 43.478 0.00 0.00 0.00 2.43
563 574 6.119240 AGAGACATGATTTTCTGACCAAGA 57.881 37.500 0.00 0.00 0.00 3.02
577 588 6.210185 CCAGGACATCACATATAGAGACATGA 59.790 42.308 0.00 0.00 0.00 3.07
580 591 5.705400 TCCAGGACATCACATATAGAGACA 58.295 41.667 0.00 0.00 0.00 3.41
587 598 7.121759 CACTTTCTTTTCCAGGACATCACATAT 59.878 37.037 0.00 0.00 0.00 1.78
592 603 5.047566 TCACTTTCTTTTCCAGGACATCA 57.952 39.130 0.00 0.00 0.00 3.07
593 604 5.474876 ACATCACTTTCTTTTCCAGGACATC 59.525 40.000 0.00 0.00 0.00 3.06
594 605 5.388654 ACATCACTTTCTTTTCCAGGACAT 58.611 37.500 0.00 0.00 0.00 3.06
595 606 4.792068 ACATCACTTTCTTTTCCAGGACA 58.208 39.130 0.00 0.00 0.00 4.02
596 607 4.216472 GGACATCACTTTCTTTTCCAGGAC 59.784 45.833 0.00 0.00 0.00 3.85
597 608 4.104738 AGGACATCACTTTCTTTTCCAGGA 59.895 41.667 0.00 0.00 0.00 3.86
598 609 4.217118 CAGGACATCACTTTCTTTTCCAGG 59.783 45.833 0.00 0.00 0.00 4.45
599 610 5.065914 TCAGGACATCACTTTCTTTTCCAG 58.934 41.667 0.00 0.00 0.00 3.86
600 611 5.047566 TCAGGACATCACTTTCTTTTCCA 57.952 39.130 0.00 0.00 0.00 3.53
601 612 5.048434 CCTTCAGGACATCACTTTCTTTTCC 60.048 44.000 0.00 0.00 37.39 3.13
602 613 5.532779 ACCTTCAGGACATCACTTTCTTTTC 59.467 40.000 0.00 0.00 38.94 2.29
603 614 5.300286 CACCTTCAGGACATCACTTTCTTTT 59.700 40.000 0.00 0.00 38.94 2.27
604 615 4.823989 CACCTTCAGGACATCACTTTCTTT 59.176 41.667 0.00 0.00 38.94 2.52
605 616 4.103153 TCACCTTCAGGACATCACTTTCTT 59.897 41.667 0.00 0.00 38.94 2.52
606 617 3.648067 TCACCTTCAGGACATCACTTTCT 59.352 43.478 0.00 0.00 38.94 2.52
607 618 4.008074 TCACCTTCAGGACATCACTTTC 57.992 45.455 0.00 0.00 38.94 2.62
608 619 4.141390 ACTTCACCTTCAGGACATCACTTT 60.141 41.667 0.00 0.00 38.94 2.66
609 620 3.392616 ACTTCACCTTCAGGACATCACTT 59.607 43.478 0.00 0.00 38.94 3.16
610 621 2.975489 ACTTCACCTTCAGGACATCACT 59.025 45.455 0.00 0.00 38.94 3.41
611 622 3.070018 CACTTCACCTTCAGGACATCAC 58.930 50.000 0.00 0.00 38.94 3.06
612 623 2.972021 TCACTTCACCTTCAGGACATCA 59.028 45.455 0.00 0.00 38.94 3.07
629 640 6.240894 ACACTGGAATGATGTATGTTTCACT 58.759 36.000 0.00 0.00 0.00 3.41
634 645 4.832248 ACGACACTGGAATGATGTATGTT 58.168 39.130 0.00 0.00 0.00 2.71
635 646 4.471904 ACGACACTGGAATGATGTATGT 57.528 40.909 0.00 0.00 0.00 2.29
664 683 7.979444 TGTTAGAAAGAAAAGAATCCGTCAT 57.021 32.000 0.00 0.00 0.00 3.06
669 688 8.576442 TGTGGAATGTTAGAAAGAAAAGAATCC 58.424 33.333 0.00 0.00 0.00 3.01
677 696 9.166173 CTACATCATGTGGAATGTTAGAAAGAA 57.834 33.333 0.00 0.00 29.57 2.52
682 701 9.987272 CTTATCTACATCATGTGGAATGTTAGA 57.013 33.333 8.06 0.00 41.18 2.10
685 704 9.334947 CTTCTTATCTACATCATGTGGAATGTT 57.665 33.333 8.06 0.00 41.18 2.71
686 705 8.489489 ACTTCTTATCTACATCATGTGGAATGT 58.511 33.333 8.06 0.00 41.18 2.71
687 706 8.899427 ACTTCTTATCTACATCATGTGGAATG 57.101 34.615 8.06 2.02 41.18 2.67
688 707 7.869937 CGACTTCTTATCTACATCATGTGGAAT 59.130 37.037 8.06 0.27 41.18 3.01
689 708 7.203218 CGACTTCTTATCTACATCATGTGGAA 58.797 38.462 8.06 0.00 41.18 3.53
691 710 5.403766 GCGACTTCTTATCTACATCATGTGG 59.596 44.000 0.00 0.00 0.00 4.17
693 712 5.069119 TGGCGACTTCTTATCTACATCATGT 59.931 40.000 0.00 0.00 0.00 3.21
694 713 5.532557 TGGCGACTTCTTATCTACATCATG 58.467 41.667 0.00 0.00 0.00 3.07
695 714 5.791336 TGGCGACTTCTTATCTACATCAT 57.209 39.130 0.00 0.00 0.00 2.45
696 715 5.532557 CATGGCGACTTCTTATCTACATCA 58.467 41.667 0.00 0.00 0.00 3.07
697 716 4.387256 GCATGGCGACTTCTTATCTACATC 59.613 45.833 0.00 0.00 0.00 3.06
703 722 0.861837 CGGCATGGCGACTTCTTATC 59.138 55.000 35.61 0.00 0.00 1.75
715 734 2.099652 TATCGAAGGAGGCGGCATGG 62.100 60.000 13.08 0.00 0.00 3.66
716 735 0.036952 ATATCGAAGGAGGCGGCATG 60.037 55.000 13.08 0.00 0.00 4.06
717 736 0.687354 AATATCGAAGGAGGCGGCAT 59.313 50.000 13.08 0.00 0.00 4.40
718 737 0.033504 GAATATCGAAGGAGGCGGCA 59.966 55.000 13.08 0.00 0.00 5.69
747 767 5.183713 CCTCAGTTGATGCTTGGTTAAATGA 59.816 40.000 0.00 0.00 0.00 2.57
748 768 5.183713 TCCTCAGTTGATGCTTGGTTAAATG 59.816 40.000 0.00 0.00 0.00 2.32
749 769 5.324409 TCCTCAGTTGATGCTTGGTTAAAT 58.676 37.500 0.00 0.00 0.00 1.40
750 770 4.724399 TCCTCAGTTGATGCTTGGTTAAA 58.276 39.130 0.00 0.00 0.00 1.52
751 771 4.041567 TCTCCTCAGTTGATGCTTGGTTAA 59.958 41.667 0.00 0.00 0.00 2.01
752 772 3.582647 TCTCCTCAGTTGATGCTTGGTTA 59.417 43.478 0.00 0.00 0.00 2.85
753 773 2.373169 TCTCCTCAGTTGATGCTTGGTT 59.627 45.455 0.00 0.00 0.00 3.67
754 774 1.980765 TCTCCTCAGTTGATGCTTGGT 59.019 47.619 0.00 0.00 0.00 3.67
755 775 2.775911 TCTCCTCAGTTGATGCTTGG 57.224 50.000 0.00 0.00 0.00 3.61
756 776 4.142447 CCATTTCTCCTCAGTTGATGCTTG 60.142 45.833 0.00 0.00 0.00 4.01
757 777 4.015084 CCATTTCTCCTCAGTTGATGCTT 58.985 43.478 0.00 0.00 0.00 3.91
758 778 3.009916 ACCATTTCTCCTCAGTTGATGCT 59.990 43.478 0.00 0.00 0.00 3.79
759 779 3.128242 CACCATTTCTCCTCAGTTGATGC 59.872 47.826 0.00 0.00 0.00 3.91
760 780 3.693085 CCACCATTTCTCCTCAGTTGATG 59.307 47.826 0.00 0.00 0.00 3.07
761 781 3.875369 GCCACCATTTCTCCTCAGTTGAT 60.875 47.826 0.00 0.00 0.00 2.57
762 782 2.553028 GCCACCATTTCTCCTCAGTTGA 60.553 50.000 0.00 0.00 0.00 3.18
763 783 1.815003 GCCACCATTTCTCCTCAGTTG 59.185 52.381 0.00 0.00 0.00 3.16
764 784 1.425066 TGCCACCATTTCTCCTCAGTT 59.575 47.619 0.00 0.00 0.00 3.16
765 785 1.067295 TGCCACCATTTCTCCTCAGT 58.933 50.000 0.00 0.00 0.00 3.41
766 786 2.431954 ATGCCACCATTTCTCCTCAG 57.568 50.000 0.00 0.00 0.00 3.35
767 787 2.846206 AGTATGCCACCATTTCTCCTCA 59.154 45.455 0.00 0.00 32.85 3.86
768 788 3.567478 AGTATGCCACCATTTCTCCTC 57.433 47.619 0.00 0.00 32.85 3.71
769 789 3.372025 GGAAGTATGCCACCATTTCTCCT 60.372 47.826 0.00 0.00 29.28 3.69
770 790 2.952310 GGAAGTATGCCACCATTTCTCC 59.048 50.000 0.00 0.00 29.28 3.71
771 791 3.879892 GAGGAAGTATGCCACCATTTCTC 59.120 47.826 0.00 0.00 34.43 2.87
772 792 3.525199 AGAGGAAGTATGCCACCATTTCT 59.475 43.478 0.00 0.00 34.43 2.52
773 793 3.629398 CAGAGGAAGTATGCCACCATTTC 59.371 47.826 0.00 0.00 34.43 2.17
774 794 3.010584 ACAGAGGAAGTATGCCACCATTT 59.989 43.478 0.00 0.00 34.43 2.32
775 795 2.578021 ACAGAGGAAGTATGCCACCATT 59.422 45.455 0.00 0.00 34.43 3.16
776 796 2.200081 ACAGAGGAAGTATGCCACCAT 58.800 47.619 0.00 0.00 34.43 3.55
777 797 1.656587 ACAGAGGAAGTATGCCACCA 58.343 50.000 0.00 0.00 34.43 4.17
778 798 2.789409 AACAGAGGAAGTATGCCACC 57.211 50.000 0.00 0.00 34.43 4.61
779 799 6.569179 TTAAAAACAGAGGAAGTATGCCAC 57.431 37.500 0.00 0.00 34.43 5.01
780 800 7.775053 ATTTAAAAACAGAGGAAGTATGCCA 57.225 32.000 0.00 0.00 34.43 4.92
781 801 9.788960 CTTATTTAAAAACAGAGGAAGTATGCC 57.211 33.333 0.00 0.00 0.00 4.40
852 872 9.573166 CCCTCCATCTCAAAATAAATGTGTATA 57.427 33.333 0.00 0.00 0.00 1.47
853 873 8.281531 TCCCTCCATCTCAAAATAAATGTGTAT 58.718 33.333 0.00 0.00 0.00 2.29
854 874 7.638444 TCCCTCCATCTCAAAATAAATGTGTA 58.362 34.615 0.00 0.00 0.00 2.90
855 875 6.493166 TCCCTCCATCTCAAAATAAATGTGT 58.507 36.000 0.00 0.00 0.00 3.72
856 876 6.460676 GCTCCCTCCATCTCAAAATAAATGTG 60.461 42.308 0.00 0.00 0.00 3.21
857 877 5.595952 GCTCCCTCCATCTCAAAATAAATGT 59.404 40.000 0.00 0.00 0.00 2.71
858 878 5.595542 TGCTCCCTCCATCTCAAAATAAATG 59.404 40.000 0.00 0.00 0.00 2.32
859 879 5.769835 TGCTCCCTCCATCTCAAAATAAAT 58.230 37.500 0.00 0.00 0.00 1.40
860 880 5.191727 TGCTCCCTCCATCTCAAAATAAA 57.808 39.130 0.00 0.00 0.00 1.40
861 881 4.860802 TGCTCCCTCCATCTCAAAATAA 57.139 40.909 0.00 0.00 0.00 1.40
862 882 4.662179 AGATGCTCCCTCCATCTCAAAATA 59.338 41.667 0.00 0.00 44.48 1.40
863 883 3.462579 AGATGCTCCCTCCATCTCAAAAT 59.537 43.478 0.00 0.00 44.48 1.82
864 884 2.848694 AGATGCTCCCTCCATCTCAAAA 59.151 45.455 0.00 0.00 44.48 2.44
865 885 2.172082 CAGATGCTCCCTCCATCTCAAA 59.828 50.000 1.20 0.00 45.60 2.69
866 886 1.767088 CAGATGCTCCCTCCATCTCAA 59.233 52.381 1.20 0.00 45.60 3.02
867 887 1.062658 TCAGATGCTCCCTCCATCTCA 60.063 52.381 1.20 0.00 45.60 3.27
868 888 1.714541 TCAGATGCTCCCTCCATCTC 58.285 55.000 1.20 0.00 45.60 2.75
870 890 4.470664 AGATATTCAGATGCTCCCTCCATC 59.529 45.833 0.00 0.00 39.44 3.51
871 891 4.437023 AGATATTCAGATGCTCCCTCCAT 58.563 43.478 0.00 0.00 0.00 3.41
872 892 3.837146 GAGATATTCAGATGCTCCCTCCA 59.163 47.826 0.00 0.00 0.00 3.86
873 893 3.197549 GGAGATATTCAGATGCTCCCTCC 59.802 52.174 0.00 0.00 39.33 4.30
874 894 4.095946 AGGAGATATTCAGATGCTCCCTC 58.904 47.826 0.00 0.00 44.84 4.30
875 895 4.095946 GAGGAGATATTCAGATGCTCCCT 58.904 47.826 0.00 0.00 44.84 4.20
876 896 3.197549 GGAGGAGATATTCAGATGCTCCC 59.802 52.174 0.00 0.00 44.84 4.30
877 897 3.837146 TGGAGGAGATATTCAGATGCTCC 59.163 47.826 4.81 4.81 44.24 4.70
878 898 5.680594 ATGGAGGAGATATTCAGATGCTC 57.319 43.478 0.00 0.00 0.00 4.26
879 899 6.451292 AAATGGAGGAGATATTCAGATGCT 57.549 37.500 0.00 0.00 0.00 3.79
880 900 6.072064 CCAAAATGGAGGAGATATTCAGATGC 60.072 42.308 0.00 0.00 40.96 3.91
881 901 7.002879 ACCAAAATGGAGGAGATATTCAGATG 58.997 38.462 2.85 0.00 40.96 2.90
882 902 7.159201 ACCAAAATGGAGGAGATATTCAGAT 57.841 36.000 2.85 0.00 40.96 2.90
883 903 6.581388 ACCAAAATGGAGGAGATATTCAGA 57.419 37.500 2.85 0.00 40.96 3.27
884 904 6.425114 CGTACCAAAATGGAGGAGATATTCAG 59.575 42.308 2.85 0.00 40.96 3.02
885 905 6.288294 CGTACCAAAATGGAGGAGATATTCA 58.712 40.000 2.85 0.00 40.96 2.57
886 906 5.701290 CCGTACCAAAATGGAGGAGATATTC 59.299 44.000 2.85 0.00 40.96 1.75
887 907 5.368523 TCCGTACCAAAATGGAGGAGATATT 59.631 40.000 2.85 0.00 40.96 1.28
888 908 4.905456 TCCGTACCAAAATGGAGGAGATAT 59.095 41.667 2.85 0.00 40.96 1.63
889 909 4.100498 GTCCGTACCAAAATGGAGGAGATA 59.900 45.833 2.85 0.00 40.96 1.98
890 910 3.112263 TCCGTACCAAAATGGAGGAGAT 58.888 45.455 2.85 0.00 40.96 2.75
891 911 2.235402 GTCCGTACCAAAATGGAGGAGA 59.765 50.000 2.85 0.00 40.96 3.71
892 912 2.629051 GTCCGTACCAAAATGGAGGAG 58.371 52.381 2.85 0.00 40.96 3.69
893 913 1.279846 GGTCCGTACCAAAATGGAGGA 59.720 52.381 2.85 6.21 45.98 3.71
894 914 1.746470 GGTCCGTACCAAAATGGAGG 58.254 55.000 2.85 4.00 45.98 4.30
904 924 1.885163 CTCACCCACTGGTCCGTACC 61.885 65.000 0.00 0.00 45.57 3.34
905 925 1.183676 ACTCACCCACTGGTCCGTAC 61.184 60.000 0.00 0.00 45.57 3.67
906 926 0.405198 TACTCACCCACTGGTCCGTA 59.595 55.000 0.00 0.00 45.57 4.02
907 927 0.252103 ATACTCACCCACTGGTCCGT 60.252 55.000 0.00 0.00 45.57 4.69
908 928 0.175760 CATACTCACCCACTGGTCCG 59.824 60.000 0.00 0.00 45.57 4.79
909 929 1.066143 CACATACTCACCCACTGGTCC 60.066 57.143 0.00 0.00 45.57 4.46
910 930 1.066143 CCACATACTCACCCACTGGTC 60.066 57.143 0.00 0.00 45.57 4.02
912 932 0.984230 ACCACATACTCACCCACTGG 59.016 55.000 0.00 0.00 37.80 4.00
913 933 2.859165 AACCACATACTCACCCACTG 57.141 50.000 0.00 0.00 0.00 3.66
914 934 3.244582 TGTAACCACATACTCACCCACT 58.755 45.455 0.00 0.00 0.00 4.00
915 935 3.688694 TGTAACCACATACTCACCCAC 57.311 47.619 0.00 0.00 0.00 4.61
916 936 4.919774 AATGTAACCACATACTCACCCA 57.080 40.909 0.00 0.00 44.83 4.51
917 937 4.331717 CGAAATGTAACCACATACTCACCC 59.668 45.833 0.00 0.00 44.83 4.61
918 938 4.331717 CCGAAATGTAACCACATACTCACC 59.668 45.833 0.00 0.00 44.83 4.02
919 939 4.933400 ACCGAAATGTAACCACATACTCAC 59.067 41.667 0.00 0.00 44.83 3.51
920 940 5.155278 ACCGAAATGTAACCACATACTCA 57.845 39.130 0.00 0.00 44.83 3.41
921 941 5.172934 TGACCGAAATGTAACCACATACTC 58.827 41.667 0.00 0.00 44.83 2.59
922 942 5.155278 TGACCGAAATGTAACCACATACT 57.845 39.130 0.00 0.00 44.83 2.12
923 943 5.866335 TTGACCGAAATGTAACCACATAC 57.134 39.130 0.00 0.00 44.83 2.39
924 944 6.431543 ACAATTGACCGAAATGTAACCACATA 59.568 34.615 13.59 0.00 44.83 2.29
926 946 4.580995 ACAATTGACCGAAATGTAACCACA 59.419 37.500 13.59 0.00 39.52 4.17
927 947 4.915085 CACAATTGACCGAAATGTAACCAC 59.085 41.667 13.59 0.00 0.00 4.16
928 948 4.580995 ACACAATTGACCGAAATGTAACCA 59.419 37.500 13.59 0.00 0.00 3.67
929 949 5.116069 ACACAATTGACCGAAATGTAACC 57.884 39.130 13.59 0.00 0.00 2.85
930 950 5.401079 CCAACACAATTGACCGAAATGTAAC 59.599 40.000 13.59 0.00 0.00 2.50
931 951 5.524284 CCAACACAATTGACCGAAATGTAA 58.476 37.500 13.59 0.00 0.00 2.41
932 952 4.557695 GCCAACACAATTGACCGAAATGTA 60.558 41.667 13.59 0.00 0.00 2.29
933 953 3.798548 GCCAACACAATTGACCGAAATGT 60.799 43.478 13.59 0.76 0.00 2.71
934 954 2.730928 GCCAACACAATTGACCGAAATG 59.269 45.455 13.59 0.06 0.00 2.32
940 1386 0.878416 TAGCGCCAACACAATTGACC 59.122 50.000 13.59 0.00 0.00 4.02
946 1392 1.149627 AAGGGTAGCGCCAACACAA 59.850 52.632 14.48 0.00 39.65 3.33
968 1414 1.002379 AGAGCTGGCAGGCTTCAAG 60.002 57.895 17.64 0.00 43.20 3.02
969 1415 1.002868 GAGAGCTGGCAGGCTTCAA 60.003 57.895 17.64 0.00 43.20 2.69
970 1416 2.667418 GAGAGCTGGCAGGCTTCA 59.333 61.111 17.64 0.00 43.20 3.02
971 1417 1.949847 TACGAGAGCTGGCAGGCTTC 61.950 60.000 17.64 11.95 43.20 3.86
972 1418 1.954362 CTACGAGAGCTGGCAGGCTT 61.954 60.000 17.64 5.24 43.20 4.35
973 1419 2.363018 TACGAGAGCTGGCAGGCT 60.363 61.111 17.64 13.66 46.11 4.58
977 1423 0.108615 GCTTTCTACGAGAGCTGGCA 60.109 55.000 0.00 0.00 36.93 4.92
1002 1448 3.979495 CGGATAGTATGTTGCCTCGTAAC 59.021 47.826 0.00 0.00 0.00 2.50
1004 1450 2.030540 GCGGATAGTATGTTGCCTCGTA 60.031 50.000 0.00 0.00 0.00 3.43
1015 1491 1.542492 CCTACGGTGGCGGATAGTAT 58.458 55.000 0.00 0.00 0.00 2.12
1031 1507 4.338710 GTGCCCGTGTTGCCCCTA 62.339 66.667 0.00 0.00 0.00 3.53
1051 1527 0.958822 ATTGTGGAAACGTGAAGGGC 59.041 50.000 0.00 0.00 0.00 5.19
1160 1637 3.855853 GCCGCTTCTCCTCCTCCC 61.856 72.222 0.00 0.00 0.00 4.30
1434 1934 2.711922 CCGAGCAGGCTAAGACGGT 61.712 63.158 10.07 0.00 36.38 4.83
1436 1936 0.454600 TAACCGAGCAGGCTAAGACG 59.545 55.000 0.00 0.00 46.52 4.18
1451 1951 6.938542 TCACAAATCGCAAAACAAATTAACC 58.061 32.000 0.00 0.00 0.00 2.85
1720 2222 2.644798 ACCTAGAACAGCAGGTTGGATT 59.355 45.455 0.00 0.00 42.68 3.01
1825 2330 8.682710 TGGGCACAACTAAAATTCAAGATATAC 58.317 33.333 0.00 0.00 0.00 1.47
1826 2331 8.815565 TGGGCACAACTAAAATTCAAGATATA 57.184 30.769 0.00 0.00 0.00 0.86
1827 2332 7.716799 TGGGCACAACTAAAATTCAAGATAT 57.283 32.000 0.00 0.00 0.00 1.63
1828 2333 7.716799 ATGGGCACAACTAAAATTCAAGATA 57.283 32.000 0.00 0.00 0.00 1.98
1829 2334 6.610075 ATGGGCACAACTAAAATTCAAGAT 57.390 33.333 0.00 0.00 0.00 2.40
1830 2335 7.375053 GTTATGGGCACAACTAAAATTCAAGA 58.625 34.615 0.00 0.00 0.00 3.02
1841 2346 4.079253 CAAACTAGGTTATGGGCACAACT 58.921 43.478 0.00 0.00 0.00 3.16
1848 2353 7.120726 CAGTAGGAAAACAAACTAGGTTATGGG 59.879 40.741 0.00 0.00 0.00 4.00
1849 2354 7.881232 TCAGTAGGAAAACAAACTAGGTTATGG 59.119 37.037 0.00 0.00 0.00 2.74
1853 2358 7.571025 TCTTCAGTAGGAAAACAAACTAGGTT 58.429 34.615 0.00 0.00 34.44 3.50
1854 2359 7.133133 TCTTCAGTAGGAAAACAAACTAGGT 57.867 36.000 0.00 0.00 34.44 3.08
1855 2360 8.622948 AATCTTCAGTAGGAAAACAAACTAGG 57.377 34.615 0.00 0.00 34.44 3.02
1886 2391 4.685169 AGTTTATTCGCACTTCCACATG 57.315 40.909 0.00 0.00 0.00 3.21
2056 2572 5.886960 AAAATAGATTGCGATGATAGCCC 57.113 39.130 0.00 0.00 0.00 5.19
2106 2623 6.166984 TGGCTGAAGATATTCAGGAAGTAG 57.833 41.667 26.80 5.68 46.37 2.57
2180 2697 2.436646 CCGCTACCAACAGCCCTG 60.437 66.667 0.00 0.00 38.37 4.45
2181 2698 3.717294 CCCGCTACCAACAGCCCT 61.717 66.667 0.00 0.00 38.37 5.19
2219 2736 6.096846 ACAAACATTTACTTGGCTCTGAAACT 59.903 34.615 0.00 0.00 0.00 2.66
2244 2761 2.095415 CCACTGTGTCGACGATCAAGTA 60.095 50.000 11.62 0.00 0.00 2.24
2253 2770 0.319900 ATGAGCACCACTGTGTCGAC 60.320 55.000 9.11 9.11 44.65 4.20
2255 2772 1.293963 CCATGAGCACCACTGTGTCG 61.294 60.000 7.08 0.00 44.65 4.35
2335 2852 6.176975 TCCATACTTCATACAACAAAAGCG 57.823 37.500 0.00 0.00 0.00 4.68
2338 2855 7.517614 TTGCTCCATACTTCATACAACAAAA 57.482 32.000 0.00 0.00 0.00 2.44
2385 2902 0.546122 TTCCAGTTGGTGCAGTCTGT 59.454 50.000 0.93 0.00 36.34 3.41
2387 2904 0.109342 CCTTCCAGTTGGTGCAGTCT 59.891 55.000 0.00 0.00 36.34 3.24
2395 2912 3.754965 TGAAGTTGATCCTTCCAGTTGG 58.245 45.455 8.66 0.00 40.11 3.77
2457 2974 3.801698 CTGGACAATCAAGATCCATCGT 58.198 45.455 0.00 0.00 41.65 3.73
2470 2987 1.852157 TCCAGGTGGGCTGGACAAT 60.852 57.895 0.00 0.00 45.15 2.71
2534 3051 2.045561 TCAGGGCAAACTTTTCGACA 57.954 45.000 0.00 0.00 0.00 4.35
2535 3052 2.293399 ACATCAGGGCAAACTTTTCGAC 59.707 45.455 0.00 0.00 0.00 4.20
2590 3107 1.065126 CCCCCTCCAGATCACTTTGTC 60.065 57.143 0.00 0.00 0.00 3.18
2614 3131 4.487948 GTTATGCAATGCAGTGAACACAT 58.512 39.130 20.00 13.64 43.65 3.21
2657 3174 5.268118 TGAATGACTCGACAATAGCATCT 57.732 39.130 0.00 0.00 0.00 2.90
2666 3183 1.407618 CCCCGTATGAATGACTCGACA 59.592 52.381 0.00 0.00 0.00 4.35
2667 3184 1.868519 GCCCCGTATGAATGACTCGAC 60.869 57.143 0.00 0.00 0.00 4.20
2669 3186 0.600255 GGCCCCGTATGAATGACTCG 60.600 60.000 0.00 0.00 0.00 4.18
2683 3200 3.059982 GGCAAGAAACAAGGCCCC 58.940 61.111 0.00 0.00 40.55 5.80
2723 3240 9.471702 ACCTCATCAAGAAATGAATCTATGTTT 57.528 29.630 0.00 0.00 42.54 2.83
2730 3247 6.092670 TCGTGAACCTCATCAAGAAATGAATC 59.907 38.462 0.00 0.00 42.54 2.52
2741 3258 3.599343 CAAGGAATCGTGAACCTCATCA 58.401 45.455 0.00 0.00 33.16 3.07
2753 3270 0.745845 CAGGAGCACCCAAGGAATCG 60.746 60.000 0.00 0.00 37.41 3.34
2835 3352 4.012374 TCATCAAAGAAATGCTCCTCCAC 58.988 43.478 0.00 0.00 0.00 4.02
2878 3395 5.971895 ACATTGTTCAACAAATGCAGTTC 57.028 34.783 7.14 0.00 41.96 3.01
2895 3412 4.944962 TCTTGATTGCGTCCTTACATTG 57.055 40.909 0.00 0.00 0.00 2.82
2905 3422 3.820467 TGAGAAACCATTCTTGATTGCGT 59.180 39.130 0.00 0.00 45.91 5.24
3042 3559 2.194326 GGCCAGGCCTTGAGATCC 59.806 66.667 24.99 0.00 46.69 3.36
3095 3612 0.955919 ACTTCTTGCGCCCAAGTAGC 60.956 55.000 15.32 0.00 45.19 3.58
3278 3795 2.917971 GACTTCAGATTCACCTTCGTCG 59.082 50.000 0.00 0.00 0.00 5.12
3300 3817 1.665161 CGAGTAGTTGGTGGACACGTC 60.665 57.143 0.00 0.00 0.00 4.34
3302 3819 1.007336 GCGAGTAGTTGGTGGACACG 61.007 60.000 0.00 0.00 0.00 4.49
3304 3821 0.601558 GAGCGAGTAGTTGGTGGACA 59.398 55.000 0.00 0.00 0.00 4.02
3305 3822 0.108756 GGAGCGAGTAGTTGGTGGAC 60.109 60.000 0.00 0.00 0.00 4.02
3309 3826 2.301870 TCAAATGGAGCGAGTAGTTGGT 59.698 45.455 0.00 0.00 0.00 3.67
3314 3831 1.482593 AGGGTCAAATGGAGCGAGTAG 59.517 52.381 0.00 0.00 45.03 2.57
3344 3861 0.846693 ACTCAAAGGGTGGCTCAACT 59.153 50.000 0.00 0.00 0.00 3.16
3347 3864 0.397941 CTCACTCAAAGGGTGGCTCA 59.602 55.000 0.00 0.00 35.61 4.26
3369 3886 7.387397 TGCCTTTTATTTTTGCAACAGGAATAG 59.613 33.333 0.00 0.00 0.00 1.73
3371 3888 6.060788 TGCCTTTTATTTTTGCAACAGGAAT 58.939 32.000 0.00 0.29 0.00 3.01
3379 3896 6.147492 CACTAGCAATGCCTTTTATTTTTGCA 59.853 34.615 0.00 0.00 41.33 4.08
3380 3897 6.402442 CCACTAGCAATGCCTTTTATTTTTGC 60.402 38.462 0.00 0.00 39.68 3.68
3381 3898 6.650390 ACCACTAGCAATGCCTTTTATTTTTG 59.350 34.615 0.00 0.00 0.00 2.44
3385 3905 5.716703 AGAACCACTAGCAATGCCTTTTATT 59.283 36.000 0.00 0.00 0.00 1.40
3397 3930 3.494398 GGTGAGAAACAGAACCACTAGCA 60.494 47.826 0.00 0.00 32.69 3.49
3398 3931 3.067833 GGTGAGAAACAGAACCACTAGC 58.932 50.000 0.00 0.00 32.69 3.42
3403 3936 6.542821 AGATAAATGGTGAGAAACAGAACCA 58.457 36.000 0.00 0.00 46.26 3.67
3416 3949 8.786826 TCTGTAACAAAGGTAGATAAATGGTG 57.213 34.615 0.00 0.00 0.00 4.17
3441 3974 0.105760 TGTGCACAAACCCTTCCCAT 60.106 50.000 19.28 0.00 0.00 4.00
3468 4001 1.673665 CTCCTCCAACCAGCAGTGC 60.674 63.158 7.13 7.13 0.00 4.40
3490 4023 0.322008 CCAGGGCTCCTCACAAGTTC 60.322 60.000 0.00 0.00 0.00 3.01
3499 4032 1.383803 GGACAGATCCAGGGCTCCT 60.384 63.158 0.00 0.00 45.47 3.69
3524 4057 0.321122 CGGAGCTTGTTCTTCCAGCT 60.321 55.000 0.00 0.00 38.68 4.24
3526 4059 1.884235 AACGGAGCTTGTTCTTCCAG 58.116 50.000 0.00 0.00 0.00 3.86
3543 4076 2.086869 TGCAGCAGGAGAGCAAATAAC 58.913 47.619 0.00 0.00 34.97 1.89
3546 4079 1.103803 CATGCAGCAGGAGAGCAAAT 58.896 50.000 0.00 0.00 42.15 2.32
3585 4118 1.576356 GAAGGCTAGGATCGCTGTTG 58.424 55.000 0.00 0.00 0.00 3.33
3586 4119 0.103208 CGAAGGCTAGGATCGCTGTT 59.897 55.000 0.00 0.00 0.00 3.16
3590 4123 1.861575 CTTTTCGAAGGCTAGGATCGC 59.138 52.381 0.00 0.00 36.56 4.58
3599 4132 1.067199 CATGCACGCTTTTCGAAGGC 61.067 55.000 13.01 13.01 41.67 4.35
3600 4133 0.454957 CCATGCACGCTTTTCGAAGG 60.455 55.000 0.00 0.00 41.67 3.46
3603 4136 0.040514 CAACCATGCACGCTTTTCGA 60.041 50.000 0.00 0.00 41.67 3.71
3604 4137 2.423202 CAACCATGCACGCTTTTCG 58.577 52.632 0.00 0.00 45.38 3.46
3654 4211 2.284190 GTTGACCTATGGCTGCTTCTC 58.716 52.381 0.00 0.00 0.00 2.87
3681 4238 5.482006 CTGTTGATGTTGTGGAGTATCTCA 58.518 41.667 0.00 0.00 33.73 3.27
3691 4248 3.243168 CCACAGTTCCTGTTGATGTTGTG 60.243 47.826 0.00 0.00 42.59 3.33
3700 4257 0.468226 TCGAAGCCACAGTTCCTGTT 59.532 50.000 0.00 0.00 42.59 3.16
3711 4268 3.774528 AGCGCATCCTCGAAGCCA 61.775 61.111 11.47 0.00 0.00 4.75
3735 4292 1.581954 CTTGACCACGAGCTCGACT 59.418 57.895 40.58 22.01 43.02 4.18
3746 4303 2.897326 TCATCGTTTCTCTCCTTGACCA 59.103 45.455 0.00 0.00 0.00 4.02
3759 4316 0.693049 ACTGGAAGGGCTCATCGTTT 59.307 50.000 0.00 0.00 39.30 3.60
3813 4370 4.193334 TCGATCCTGCTGCGACCG 62.193 66.667 0.00 0.00 0.00 4.79
3814 4371 2.583593 GTCGATCCTGCTGCGACC 60.584 66.667 9.88 0.00 46.15 4.79
3816 4373 1.139734 GAAGTCGATCCTGCTGCGA 59.860 57.895 0.00 0.00 0.00 5.10
3957 4526 2.125350 GCCTCGAACTCCCTGCAG 60.125 66.667 6.78 6.78 0.00 4.41
3985 4554 2.184830 TCCGAGCCGTCCGATACAG 61.185 63.158 0.00 0.00 0.00 2.74
4047 4616 3.797331 CTCTGGAGCAGTCACCCA 58.203 61.111 0.00 0.00 32.61 4.51
4065 4634 0.246360 GTTCGGCAAAAATGGGGGAG 59.754 55.000 0.00 0.00 0.00 4.30
4130 4701 0.459934 ACCGACGACGAAACAACCAA 60.460 50.000 9.28 0.00 42.66 3.67
4140 4718 2.654912 GGTTGCAAGACCGACGACG 61.655 63.158 0.00 0.00 39.43 5.12
4141 4719 1.300697 AGGTTGCAAGACCGACGAC 60.301 57.895 0.00 0.00 44.62 4.34
4142 4720 1.300620 CAGGTTGCAAGACCGACGA 60.301 57.895 0.00 0.00 44.62 4.20
4143 4721 2.317609 CCAGGTTGCAAGACCGACG 61.318 63.158 0.00 0.00 44.62 5.12
4144 4722 0.951040 CTCCAGGTTGCAAGACCGAC 60.951 60.000 0.00 0.00 44.62 4.79
4171 4749 0.593773 CACGGCAAAAGTGGAAACCG 60.594 55.000 0.00 0.00 45.86 4.44
4242 4828 1.026718 CCTCTACTTTTGGCCCTGCG 61.027 60.000 0.00 0.00 0.00 5.18
4258 4844 3.446570 GCACACATGGGCTGCCTC 61.447 66.667 19.68 9.39 42.27 4.70
4398 5357 1.444933 TCATCCCCTTTGTCAGGTGT 58.555 50.000 0.00 0.00 42.02 4.16
4427 5386 0.758734 GATGGATGGATGGACGGACA 59.241 55.000 0.00 0.00 0.00 4.02
4436 5395 5.306419 CGTATAGGATGATGGATGGATGGAT 59.694 44.000 0.00 0.00 0.00 3.41
4554 5522 1.601419 CCAAACCCAGCCAGATGCAG 61.601 60.000 0.00 0.00 44.83 4.41
4590 5558 4.569180 CGCCATACCCAGCCCAGG 62.569 72.222 0.00 0.00 0.00 4.45
4661 5629 4.536765 ACAATGTGTTCCTTGTTCCTTCT 58.463 39.130 0.00 0.00 31.74 2.85
4678 5655 7.845483 CATCTCGGATAGAGTTGTTTACAATG 58.155 38.462 0.00 0.00 46.86 2.82
4687 5664 4.108336 CACACACATCTCGGATAGAGTTG 58.892 47.826 5.07 5.07 46.79 3.16
4711 5688 4.115199 GACTGCCCCGCCCAGAAT 62.115 66.667 0.00 0.00 34.47 2.40
4838 5833 6.531439 CGTATAAGTATTTTAGATTGCGGGC 58.469 40.000 0.00 0.00 0.00 6.13
4852 5847 6.726490 TGAAGGAAGGAAGCGTATAAGTAT 57.274 37.500 0.00 0.00 0.00 2.12
4862 5857 2.693074 TGTGGTTTTGAAGGAAGGAAGC 59.307 45.455 0.00 0.00 0.00 3.86
4863 5858 6.003950 TCTATGTGGTTTTGAAGGAAGGAAG 58.996 40.000 0.00 0.00 0.00 3.46
4864 5859 5.947663 TCTATGTGGTTTTGAAGGAAGGAA 58.052 37.500 0.00 0.00 0.00 3.36
4865 5860 5.576563 TCTATGTGGTTTTGAAGGAAGGA 57.423 39.130 0.00 0.00 0.00 3.36
4866 5861 7.938140 TTATCTATGTGGTTTTGAAGGAAGG 57.062 36.000 0.00 0.00 0.00 3.46
4876 5871 8.567948 CGCTGGAAATATTTATCTATGTGGTTT 58.432 33.333 0.00 0.00 0.00 3.27
4877 5872 7.308589 GCGCTGGAAATATTTATCTATGTGGTT 60.309 37.037 0.00 0.00 0.00 3.67
4878 5873 6.149474 GCGCTGGAAATATTTATCTATGTGGT 59.851 38.462 0.00 0.00 0.00 4.16
4879 5874 6.546395 GCGCTGGAAATATTTATCTATGTGG 58.454 40.000 0.00 0.00 0.00 4.17
4880 5875 6.090763 TCGCGCTGGAAATATTTATCTATGTG 59.909 38.462 5.56 0.00 0.00 3.21
4882 5877 6.647212 TCGCGCTGGAAATATTTATCTATG 57.353 37.500 5.56 0.00 0.00 2.23
4885 5880 5.482908 AGATCGCGCTGGAAATATTTATCT 58.517 37.500 5.56 0.77 0.00 1.98
4886 5881 5.499334 CGAGATCGCGCTGGAAATATTTATC 60.499 44.000 5.77 0.00 0.00 1.75
4887 5882 4.327357 CGAGATCGCGCTGGAAATATTTAT 59.673 41.667 5.77 0.00 0.00 1.40
4888 5883 3.673338 CGAGATCGCGCTGGAAATATTTA 59.327 43.478 5.77 0.00 0.00 1.40
4889 5884 2.476619 CGAGATCGCGCTGGAAATATTT 59.523 45.455 5.77 0.00 0.00 1.40
4936 5933 2.442458 GACGAGGGAGGAGGGGAC 60.442 72.222 0.00 0.00 0.00 4.46
4940 5937 1.820481 GACGAGACGAGGGAGGAGG 60.820 68.421 0.00 0.00 0.00 4.30
4971 5972 3.083293 GAGAAGTCCGTAGAACTCACCT 58.917 50.000 0.00 0.00 0.00 4.00
4979 5980 1.746470 TGCATCGAGAAGTCCGTAGA 58.254 50.000 0.00 0.00 0.00 2.59
4982 5983 1.645034 CATTGCATCGAGAAGTCCGT 58.355 50.000 0.00 0.00 0.00 4.69
4989 5990 1.803998 CGAGGAAGCATTGCATCGAGA 60.804 52.381 11.91 0.00 39.77 4.04
5005 6006 2.283617 CGAATGCAACAGAGAATCGAGG 59.716 50.000 0.00 0.00 42.67 4.63
5006 6007 2.285486 GCGAATGCAACAGAGAATCGAG 60.285 50.000 0.00 0.00 40.37 4.04
5010 6011 0.729116 CGGCGAATGCAACAGAGAAT 59.271 50.000 0.00 0.00 45.35 2.40
5036 6037 2.408835 CCATTGCCGCCGATCAAC 59.591 61.111 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.