Multiple sequence alignment - TraesCS2D01G499900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G499900 chr2D 100.000 2875 0 0 1 2875 594572658 594569784 0.000000e+00 5310.0
1 TraesCS2D01G499900 chr1B 94.297 754 43 0 1 754 216519288 216520041 0.000000e+00 1155.0
2 TraesCS2D01G499900 chr1D 93.907 755 46 0 1 755 477260432 477259678 0.000000e+00 1140.0
3 TraesCS2D01G499900 chr1D 93.245 755 50 1 1 754 302902062 302901308 0.000000e+00 1110.0
4 TraesCS2D01G499900 chr6B 92.573 754 54 1 1 754 674957725 674956974 0.000000e+00 1081.0
5 TraesCS2D01G499900 chr5D 90.344 756 71 2 1 754 550426468 550425713 0.000000e+00 990.0
6 TraesCS2D01G499900 chr5A 89.920 754 76 0 1 754 673561902 673561149 0.000000e+00 972.0
7 TraesCS2D01G499900 chr3B 87.192 851 101 6 2028 2875 545081551 545082396 0.000000e+00 961.0
8 TraesCS2D01G499900 chr3B 85.989 728 87 8 1261 1975 813809664 813808939 0.000000e+00 765.0
9 TraesCS2D01G499900 chr3B 85.989 728 87 8 1261 1975 813836382 813835657 0.000000e+00 765.0
10 TraesCS2D01G499900 chr3B 83.188 458 75 2 1613 2069 545081097 545081553 4.430000e-113 418.0
11 TraesCS2D01G499900 chr4A 89.243 753 81 0 1 753 673129381 673128629 0.000000e+00 942.0
12 TraesCS2D01G499900 chr4A 81.876 629 104 6 2229 2852 735565310 735565933 3.280000e-144 521.0
13 TraesCS2D01G499900 chr7A 88.360 756 84 3 1 755 19446068 19446820 0.000000e+00 905.0
14 TraesCS2D01G499900 chr7A 90.291 103 10 0 2773 2875 39478637 39478535 5.000000e-28 135.0
15 TraesCS2D01G499900 chr7B 88.095 756 86 3 1 755 494242778 494243530 0.000000e+00 894.0
16 TraesCS2D01G499900 chr7B 76.815 496 98 14 2354 2842 100008992 100009477 2.200000e-66 263.0
17 TraesCS2D01G499900 chr7B 74.037 493 117 11 2355 2843 6389318 6388833 1.050000e-44 191.0
18 TraesCS2D01G499900 chr3A 77.642 1306 263 21 1585 2875 547128187 547126896 0.000000e+00 767.0
19 TraesCS2D01G499900 chr2B 82.035 629 103 6 2229 2852 711154683 711155306 7.060000e-146 527.0
20 TraesCS2D01G499900 chr2B 76.866 134 25 6 1618 1748 68187384 68187514 1.430000e-08 71.3
21 TraesCS2D01G499900 chr6A 76.145 524 91 25 909 1408 529573173 529573686 7.960000e-61 244.0
22 TraesCS2D01G499900 chr6A 72.241 580 122 28 916 1466 494495365 494495934 2.990000e-30 143.0
23 TraesCS2D01G499900 chr4B 75.356 491 114 5 2354 2842 404791405 404790920 2.230000e-56 230.0
24 TraesCS2D01G499900 chr4B 90.000 50 2 1 913 962 115065679 115065725 8.600000e-06 62.1
25 TraesCS2D01G499900 chrUn 79.077 325 65 3 2357 2681 30362478 30362157 1.340000e-53 220.0
26 TraesCS2D01G499900 chr3D 74.606 508 114 14 2354 2855 271438747 271439245 2.900000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G499900 chr2D 594569784 594572658 2874 True 5310.0 5310 100.000 1 2875 1 chr2D.!!$R1 2874
1 TraesCS2D01G499900 chr1B 216519288 216520041 753 False 1155.0 1155 94.297 1 754 1 chr1B.!!$F1 753
2 TraesCS2D01G499900 chr1D 477259678 477260432 754 True 1140.0 1140 93.907 1 755 1 chr1D.!!$R2 754
3 TraesCS2D01G499900 chr1D 302901308 302902062 754 True 1110.0 1110 93.245 1 754 1 chr1D.!!$R1 753
4 TraesCS2D01G499900 chr6B 674956974 674957725 751 True 1081.0 1081 92.573 1 754 1 chr6B.!!$R1 753
5 TraesCS2D01G499900 chr5D 550425713 550426468 755 True 990.0 990 90.344 1 754 1 chr5D.!!$R1 753
6 TraesCS2D01G499900 chr5A 673561149 673561902 753 True 972.0 972 89.920 1 754 1 chr5A.!!$R1 753
7 TraesCS2D01G499900 chr3B 813808939 813809664 725 True 765.0 765 85.989 1261 1975 1 chr3B.!!$R1 714
8 TraesCS2D01G499900 chr3B 813835657 813836382 725 True 765.0 765 85.989 1261 1975 1 chr3B.!!$R2 714
9 TraesCS2D01G499900 chr3B 545081097 545082396 1299 False 689.5 961 85.190 1613 2875 2 chr3B.!!$F1 1262
10 TraesCS2D01G499900 chr4A 673128629 673129381 752 True 942.0 942 89.243 1 753 1 chr4A.!!$R1 752
11 TraesCS2D01G499900 chr4A 735565310 735565933 623 False 521.0 521 81.876 2229 2852 1 chr4A.!!$F1 623
12 TraesCS2D01G499900 chr7A 19446068 19446820 752 False 905.0 905 88.360 1 755 1 chr7A.!!$F1 754
13 TraesCS2D01G499900 chr7B 494242778 494243530 752 False 894.0 894 88.095 1 755 1 chr7B.!!$F2 754
14 TraesCS2D01G499900 chr3A 547126896 547128187 1291 True 767.0 767 77.642 1585 2875 1 chr3A.!!$R1 1290
15 TraesCS2D01G499900 chr2B 711154683 711155306 623 False 527.0 527 82.035 2229 2852 1 chr2B.!!$F2 623
16 TraesCS2D01G499900 chr6A 529573173 529573686 513 False 244.0 244 76.145 909 1408 1 chr6A.!!$F2 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 843 0.035725 GGGTTTTTCCGACCCGATCT 60.036 55.0 0.0 0.0 46.71 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2565 2653 0.174845 TACCTTCAGGATTCCACGCG 59.825 55.0 3.53 3.53 38.94 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 3.253432 GTCTCTTCCAACGGAGCAATTTT 59.747 43.478 0.00 0.00 31.21 1.82
95 96 4.280436 TGATGATCGTTACTTTGTGGGT 57.720 40.909 0.00 0.00 0.00 4.51
138 139 7.449247 GGAAAGCTATACATGAGGAGATCTTT 58.551 38.462 0.00 0.11 0.00 2.52
172 173 3.066621 TGCCACTGACAACTTCATCAAAC 59.933 43.478 0.00 0.00 32.17 2.93
216 217 4.962155 TCTTGAAGAAGAAGGAGAACACC 58.038 43.478 0.00 0.00 35.14 4.16
224 225 1.134438 AAGGAGAACACCCAGGGGAC 61.134 60.000 11.37 0.00 38.96 4.46
324 325 4.776647 GGCATGTTTGGCGCGGTC 62.777 66.667 8.83 0.00 38.79 4.79
447 448 0.403271 AGGCACTGGCACTTTCAGAT 59.597 50.000 5.25 0.00 43.71 2.90
558 559 2.496899 TTGTCCAAGAGATCAAGGCC 57.503 50.000 0.00 0.00 0.00 5.19
573 574 0.615850 AGGCCAGAGCAACTACCTTC 59.384 55.000 5.01 0.00 42.56 3.46
711 712 6.574350 CGACCTTCTCTTTGTACCTATGAAT 58.426 40.000 0.00 0.00 0.00 2.57
771 772 2.844839 GGCAGAGTCCGCCCCTAT 60.845 66.667 6.05 0.00 44.22 2.57
772 773 1.533273 GGCAGAGTCCGCCCCTATA 60.533 63.158 6.05 0.00 44.22 1.31
773 774 1.536943 GGCAGAGTCCGCCCCTATAG 61.537 65.000 6.05 0.00 44.22 1.31
774 775 1.536943 GCAGAGTCCGCCCCTATAGG 61.537 65.000 12.27 12.27 0.00 2.57
775 776 0.178958 CAGAGTCCGCCCCTATAGGT 60.179 60.000 17.72 0.00 0.00 3.08
776 777 0.178958 AGAGTCCGCCCCTATAGGTG 60.179 60.000 17.72 7.51 37.15 4.00
781 782 2.847715 GCCCCTATAGGTGGCGGT 60.848 66.667 26.14 0.00 40.16 5.68
782 783 2.449450 GCCCCTATAGGTGGCGGTT 61.449 63.158 26.14 0.00 40.16 4.44
783 784 1.991339 GCCCCTATAGGTGGCGGTTT 61.991 60.000 26.14 0.00 40.16 3.27
784 785 0.108019 CCCCTATAGGTGGCGGTTTC 59.892 60.000 17.72 0.00 0.00 2.78
785 786 0.108019 CCCTATAGGTGGCGGTTTCC 59.892 60.000 17.72 0.00 0.00 3.13
797 798 2.894307 CGGTTTCCGTTTCTTCATCC 57.106 50.000 0.00 0.00 42.73 3.51
798 799 1.127951 CGGTTTCCGTTTCTTCATCCG 59.872 52.381 0.00 0.00 42.73 4.18
799 800 2.419667 GGTTTCCGTTTCTTCATCCGA 58.580 47.619 0.00 0.00 0.00 4.55
800 801 2.159037 GGTTTCCGTTTCTTCATCCGAC 59.841 50.000 0.00 0.00 0.00 4.79
801 802 1.705256 TTCCGTTTCTTCATCCGACG 58.295 50.000 0.00 0.00 0.00 5.12
802 803 0.883153 TCCGTTTCTTCATCCGACGA 59.117 50.000 0.00 0.00 35.90 4.20
803 804 1.475280 TCCGTTTCTTCATCCGACGAT 59.525 47.619 0.00 0.00 35.90 3.73
804 805 1.852895 CCGTTTCTTCATCCGACGATC 59.147 52.381 0.00 0.00 35.90 3.69
805 806 1.513178 CGTTTCTTCATCCGACGATCG 59.487 52.381 14.88 14.88 40.07 3.69
806 807 2.527100 GTTTCTTCATCCGACGATCGT 58.473 47.619 22.97 22.97 38.40 3.73
807 808 2.188837 TTCTTCATCCGACGATCGTG 57.811 50.000 28.12 17.14 38.40 4.35
808 809 0.380733 TCTTCATCCGACGATCGTGG 59.619 55.000 28.12 24.56 38.40 4.94
809 810 0.595053 CTTCATCCGACGATCGTGGG 60.595 60.000 35.38 35.38 43.96 4.61
810 811 2.011741 TTCATCCGACGATCGTGGGG 62.012 60.000 38.16 30.44 43.02 4.96
811 812 3.224324 ATCCGACGATCGTGGGGG 61.224 66.667 38.16 28.32 43.02 5.40
815 816 4.867599 GACGATCGTGGGGGCGAC 62.868 72.222 28.12 4.32 43.99 5.19
817 818 4.873129 CGATCGTGGGGGCGACTG 62.873 72.222 7.03 0.00 43.99 3.51
818 819 4.530857 GATCGTGGGGGCGACTGG 62.531 72.222 0.00 0.00 43.99 4.00
822 823 3.324108 GTGGGGGCGACTGGGTTA 61.324 66.667 0.00 0.00 0.00 2.85
823 824 3.006728 TGGGGGCGACTGGGTTAG 61.007 66.667 0.00 0.00 0.00 2.34
824 825 3.793888 GGGGGCGACTGGGTTAGG 61.794 72.222 0.00 0.00 0.00 2.69
825 826 3.793888 GGGGCGACTGGGTTAGGG 61.794 72.222 0.00 0.00 0.00 3.53
826 827 3.007323 GGGCGACTGGGTTAGGGT 61.007 66.667 0.00 0.00 0.00 4.34
827 828 2.599757 GGGCGACTGGGTTAGGGTT 61.600 63.158 0.00 0.00 0.00 4.11
828 829 1.377612 GGCGACTGGGTTAGGGTTT 59.622 57.895 0.00 0.00 0.00 3.27
829 830 0.251033 GGCGACTGGGTTAGGGTTTT 60.251 55.000 0.00 0.00 0.00 2.43
830 831 1.612676 GCGACTGGGTTAGGGTTTTT 58.387 50.000 0.00 0.00 0.00 1.94
831 832 1.538512 GCGACTGGGTTAGGGTTTTTC 59.461 52.381 0.00 0.00 0.00 2.29
832 833 2.156917 CGACTGGGTTAGGGTTTTTCC 58.843 52.381 0.00 0.00 0.00 3.13
833 834 2.156917 GACTGGGTTAGGGTTTTTCCG 58.843 52.381 0.00 0.00 37.00 4.30
834 835 1.776063 ACTGGGTTAGGGTTTTTCCGA 59.224 47.619 0.00 0.00 37.00 4.55
835 836 2.156917 CTGGGTTAGGGTTTTTCCGAC 58.843 52.381 0.00 0.00 37.00 4.79
836 837 1.202915 TGGGTTAGGGTTTTTCCGACC 60.203 52.381 0.00 0.00 37.25 4.79
840 841 4.728409 GGGTTTTTCCGACCCGAT 57.272 55.556 0.00 0.00 46.71 4.18
841 842 2.474561 GGGTTTTTCCGACCCGATC 58.525 57.895 0.00 0.00 46.71 3.69
842 843 0.035725 GGGTTTTTCCGACCCGATCT 60.036 55.000 0.00 0.00 46.71 2.75
843 844 1.207811 GGGTTTTTCCGACCCGATCTA 59.792 52.381 0.00 0.00 46.71 1.98
844 845 2.547826 GGTTTTTCCGACCCGATCTAG 58.452 52.381 0.00 0.00 0.00 2.43
845 846 1.931841 GTTTTTCCGACCCGATCTAGC 59.068 52.381 0.00 0.00 0.00 3.42
846 847 0.101759 TTTTCCGACCCGATCTAGCG 59.898 55.000 0.00 0.00 0.00 4.26
847 848 0.749091 TTTCCGACCCGATCTAGCGA 60.749 55.000 0.00 0.00 0.00 4.93
848 849 0.536687 TTCCGACCCGATCTAGCGAT 60.537 55.000 0.00 0.00 0.00 4.58
849 850 0.954449 TCCGACCCGATCTAGCGATC 60.954 60.000 0.00 0.00 42.13 3.69
850 851 1.502640 CGACCCGATCTAGCGATCC 59.497 63.158 0.00 0.00 42.49 3.36
851 852 1.235281 CGACCCGATCTAGCGATCCA 61.235 60.000 0.00 0.00 42.49 3.41
852 853 0.523966 GACCCGATCTAGCGATCCAG 59.476 60.000 0.00 0.00 42.49 3.86
853 854 0.178987 ACCCGATCTAGCGATCCAGT 60.179 55.000 0.00 0.00 42.49 4.00
854 855 0.523966 CCCGATCTAGCGATCCAGTC 59.476 60.000 0.00 0.00 42.49 3.51
855 856 1.529226 CCGATCTAGCGATCCAGTCT 58.471 55.000 0.00 0.00 42.49 3.24
856 857 1.198867 CCGATCTAGCGATCCAGTCTG 59.801 57.143 0.00 0.00 42.49 3.51
857 858 1.400888 CGATCTAGCGATCCAGTCTGC 60.401 57.143 0.00 0.00 42.49 4.26
858 859 0.595588 ATCTAGCGATCCAGTCTGCG 59.404 55.000 0.00 0.00 33.55 5.18
859 860 0.748367 TCTAGCGATCCAGTCTGCGT 60.748 55.000 0.00 0.00 33.55 5.24
860 861 0.945099 CTAGCGATCCAGTCTGCGTA 59.055 55.000 0.00 0.00 33.55 4.42
861 862 1.537638 CTAGCGATCCAGTCTGCGTAT 59.462 52.381 0.00 0.00 33.55 3.06
862 863 0.747255 AGCGATCCAGTCTGCGTATT 59.253 50.000 0.00 0.00 33.55 1.89
863 864 1.132588 GCGATCCAGTCTGCGTATTC 58.867 55.000 0.00 0.00 0.00 1.75
864 865 1.772182 CGATCCAGTCTGCGTATTCC 58.228 55.000 0.00 0.00 0.00 3.01
865 866 1.603172 CGATCCAGTCTGCGTATTCCC 60.603 57.143 0.00 0.00 0.00 3.97
866 867 0.389391 ATCCAGTCTGCGTATTCCCG 59.611 55.000 0.00 0.00 0.00 5.14
867 868 0.968901 TCCAGTCTGCGTATTCCCGT 60.969 55.000 0.00 0.00 0.00 5.28
868 869 0.527817 CCAGTCTGCGTATTCCCGTC 60.528 60.000 0.00 0.00 0.00 4.79
869 870 0.866061 CAGTCTGCGTATTCCCGTCG 60.866 60.000 0.00 0.00 0.00 5.12
870 871 1.138247 GTCTGCGTATTCCCGTCGT 59.862 57.895 0.00 0.00 0.00 4.34
871 872 0.457337 GTCTGCGTATTCCCGTCGTT 60.457 55.000 0.00 0.00 0.00 3.85
872 873 0.179156 TCTGCGTATTCCCGTCGTTC 60.179 55.000 0.00 0.00 0.00 3.95
873 874 0.179145 CTGCGTATTCCCGTCGTTCT 60.179 55.000 0.00 0.00 0.00 3.01
874 875 0.244450 TGCGTATTCCCGTCGTTCTT 59.756 50.000 0.00 0.00 0.00 2.52
875 876 0.919300 GCGTATTCCCGTCGTTCTTC 59.081 55.000 0.00 0.00 0.00 2.87
876 877 1.553308 CGTATTCCCGTCGTTCTTCC 58.447 55.000 0.00 0.00 0.00 3.46
877 878 1.553308 GTATTCCCGTCGTTCTTCCG 58.447 55.000 0.00 0.00 0.00 4.30
878 879 0.457035 TATTCCCGTCGTTCTTCCGG 59.543 55.000 0.00 0.00 41.37 5.14
879 880 1.538687 ATTCCCGTCGTTCTTCCGGT 61.539 55.000 0.00 0.00 40.10 5.28
880 881 2.126189 CCCGTCGTTCTTCCGGTC 60.126 66.667 0.00 0.00 40.10 4.79
881 882 2.633509 CCCGTCGTTCTTCCGGTCT 61.634 63.158 0.00 0.00 40.10 3.85
882 883 1.288127 CCGTCGTTCTTCCGGTCTT 59.712 57.895 0.00 0.00 37.00 3.01
883 884 1.007336 CCGTCGTTCTTCCGGTCTTG 61.007 60.000 0.00 0.00 37.00 3.02
884 885 1.615107 CGTCGTTCTTCCGGTCTTGC 61.615 60.000 0.00 0.00 0.00 4.01
885 886 1.372499 TCGTTCTTCCGGTCTTGCG 60.372 57.895 0.00 2.60 0.00 4.85
886 887 1.372499 CGTTCTTCCGGTCTTGCGA 60.372 57.895 0.00 0.00 0.00 5.10
887 888 0.736325 CGTTCTTCCGGTCTTGCGAT 60.736 55.000 0.00 0.00 0.00 4.58
888 889 1.000145 GTTCTTCCGGTCTTGCGATC 59.000 55.000 0.00 0.00 0.00 3.69
889 890 0.457853 TTCTTCCGGTCTTGCGATCG 60.458 55.000 11.69 11.69 43.29 3.69
890 891 1.138883 CTTCCGGTCTTGCGATCGA 59.861 57.895 21.57 0.59 46.52 3.59
891 892 0.249073 CTTCCGGTCTTGCGATCGAT 60.249 55.000 21.57 0.00 46.52 3.59
892 893 0.174845 TTCCGGTCTTGCGATCGATT 59.825 50.000 21.57 0.00 46.52 3.34
893 894 0.248907 TCCGGTCTTGCGATCGATTC 60.249 55.000 21.57 1.10 46.52 2.52
894 895 1.215655 CCGGTCTTGCGATCGATTCC 61.216 60.000 21.57 11.62 46.52 3.01
895 896 0.527600 CGGTCTTGCGATCGATTCCA 60.528 55.000 21.57 3.87 46.52 3.53
896 897 0.931005 GGTCTTGCGATCGATTCCAC 59.069 55.000 21.57 7.65 0.00 4.02
897 898 1.640428 GTCTTGCGATCGATTCCACA 58.360 50.000 21.57 2.60 0.00 4.17
898 899 1.324736 GTCTTGCGATCGATTCCACAC 59.675 52.381 21.57 2.93 0.00 3.82
899 900 0.652592 CTTGCGATCGATTCCACACC 59.347 55.000 21.57 0.00 0.00 4.16
900 901 0.249120 TTGCGATCGATTCCACACCT 59.751 50.000 21.57 0.00 0.00 4.00
901 902 1.107945 TGCGATCGATTCCACACCTA 58.892 50.000 21.57 0.00 0.00 3.08
902 903 1.686587 TGCGATCGATTCCACACCTAT 59.313 47.619 21.57 0.00 0.00 2.57
903 904 2.061773 GCGATCGATTCCACACCTATG 58.938 52.381 21.57 0.00 0.00 2.23
904 905 2.288213 GCGATCGATTCCACACCTATGA 60.288 50.000 21.57 0.00 0.00 2.15
905 906 3.569548 CGATCGATTCCACACCTATGAG 58.430 50.000 10.26 0.00 0.00 2.90
906 907 3.004839 CGATCGATTCCACACCTATGAGT 59.995 47.826 10.26 0.00 0.00 3.41
907 908 3.801114 TCGATTCCACACCTATGAGTG 57.199 47.619 0.00 0.00 43.65 3.51
908 909 2.159099 TCGATTCCACACCTATGAGTGC 60.159 50.000 0.00 0.00 41.67 4.40
909 910 2.565841 GATTCCACACCTATGAGTGCC 58.434 52.381 0.00 0.00 41.67 5.01
910 911 0.618458 TTCCACACCTATGAGTGCCC 59.382 55.000 0.00 0.00 41.67 5.36
911 912 0.252696 TCCACACCTATGAGTGCCCT 60.253 55.000 0.00 0.00 41.67 5.19
912 913 1.007842 TCCACACCTATGAGTGCCCTA 59.992 52.381 0.00 0.00 41.67 3.53
913 914 1.414181 CCACACCTATGAGTGCCCTAG 59.586 57.143 0.00 0.00 41.67 3.02
914 915 2.111384 CACACCTATGAGTGCCCTAGT 58.889 52.381 0.00 0.00 41.67 2.57
948 951 0.741221 GCCTTCTGCGTGTTCCTAGG 60.741 60.000 0.82 0.82 0.00 3.02
951 954 1.476845 TTCTGCGTGTTCCTAGGGCA 61.477 55.000 9.46 9.21 0.00 5.36
973 976 3.893720 CGTAGTCGTAAAACACTGACCT 58.106 45.455 0.00 0.00 33.75 3.85
974 977 5.034554 CGTAGTCGTAAAACACTGACCTA 57.965 43.478 0.00 0.00 33.75 3.08
975 978 5.084722 CGTAGTCGTAAAACACTGACCTAG 58.915 45.833 0.00 0.00 33.75 3.02
976 979 4.516365 AGTCGTAAAACACTGACCTAGG 57.484 45.455 7.41 7.41 33.75 3.02
977 980 2.991866 GTCGTAAAACACTGACCTAGGC 59.008 50.000 9.30 2.11 0.00 3.93
980 997 0.605589 AAAACACTGACCTAGGCGGC 60.606 55.000 9.30 0.00 35.61 6.53
1005 1022 3.237741 GAGGCGGGGGAGATGGAG 61.238 72.222 0.00 0.00 0.00 3.86
1011 1028 2.448736 GGGGAGATGGAGGGGGTC 60.449 72.222 0.00 0.00 0.00 4.46
1014 1031 2.764128 GAGATGGAGGGGGTCGCA 60.764 66.667 0.00 0.00 0.00 5.10
1025 1042 1.526887 GGGTCGCAGGGATGATGAA 59.473 57.895 0.00 0.00 0.00 2.57
1030 1047 0.107017 CGCAGGGATGATGAAGGGTT 60.107 55.000 0.00 0.00 0.00 4.11
1033 1050 2.381911 CAGGGATGATGAAGGGTTTGG 58.618 52.381 0.00 0.00 0.00 3.28
1034 1051 1.288932 AGGGATGATGAAGGGTTTGGG 59.711 52.381 0.00 0.00 0.00 4.12
1038 1055 0.251742 TGATGAAGGGTTTGGGGCTG 60.252 55.000 0.00 0.00 0.00 4.85
1044 1061 2.359975 GGTTTGGGGCTGTCGGAG 60.360 66.667 0.00 0.00 0.00 4.63
1052 1069 1.682684 GGCTGTCGGAGGAGGAGAA 60.683 63.158 0.00 0.00 0.00 2.87
1059 1076 1.045911 CGGAGGAGGAGAAGAAGGGG 61.046 65.000 0.00 0.00 0.00 4.79
1060 1077 0.043485 GGAGGAGGAGAAGAAGGGGT 59.957 60.000 0.00 0.00 0.00 4.95
1063 1081 1.152271 AGGAGGAGAAGAAGGGGTCAA 59.848 52.381 0.00 0.00 0.00 3.18
1069 1087 3.264450 GGAGAAGAAGGGGTCAAGATCAA 59.736 47.826 0.00 0.00 0.00 2.57
1078 1096 2.478831 GGTCAAGATCAAGATCTCGGC 58.521 52.381 12.62 3.64 46.75 5.54
1094 1112 1.222113 GGCGAAGGAGAAGGGGAAG 59.778 63.158 0.00 0.00 0.00 3.46
1095 1113 1.265454 GGCGAAGGAGAAGGGGAAGA 61.265 60.000 0.00 0.00 0.00 2.87
1096 1114 0.176910 GCGAAGGAGAAGGGGAAGAG 59.823 60.000 0.00 0.00 0.00 2.85
1097 1115 1.562783 CGAAGGAGAAGGGGAAGAGT 58.437 55.000 0.00 0.00 0.00 3.24
1099 1117 2.261729 GAAGGAGAAGGGGAAGAGTGT 58.738 52.381 0.00 0.00 0.00 3.55
1101 1119 0.615850 GGAGAAGGGGAAGAGTGTGG 59.384 60.000 0.00 0.00 0.00 4.17
1102 1120 0.615850 GAGAAGGGGAAGAGTGTGGG 59.384 60.000 0.00 0.00 0.00 4.61
1104 1122 0.840722 GAAGGGGAAGAGTGTGGGGA 60.841 60.000 0.00 0.00 0.00 4.81
1105 1123 0.178831 AAGGGGAAGAGTGTGGGGAT 60.179 55.000 0.00 0.00 0.00 3.85
1106 1124 0.916358 AGGGGAAGAGTGTGGGGATG 60.916 60.000 0.00 0.00 0.00 3.51
1109 1127 0.257039 GGAAGAGTGTGGGGATGCAT 59.743 55.000 0.00 0.00 0.00 3.96
1115 1133 3.520862 GTGGGGATGCATGCGGTG 61.521 66.667 14.09 0.00 0.00 4.94
1122 1140 2.891941 GATGCATGCGGTGGGGAAGA 62.892 60.000 14.09 0.00 0.00 2.87
1124 1142 1.754234 GCATGCGGTGGGGAAGATT 60.754 57.895 0.00 0.00 0.00 2.40
1125 1143 1.322538 GCATGCGGTGGGGAAGATTT 61.323 55.000 0.00 0.00 0.00 2.17
1134 1152 1.095600 GGGGAAGATTTTGTCGGAGC 58.904 55.000 0.00 0.00 0.00 4.70
1137 1155 0.097150 GAAGATTTTGTCGGAGCGGC 59.903 55.000 0.00 0.00 0.00 6.53
1139 1157 0.741221 AGATTTTGTCGGAGCGGCTC 60.741 55.000 21.57 21.57 30.55 4.70
1160 1178 2.242113 GCATCCCGATGTGATCTGC 58.758 57.895 6.56 0.00 40.80 4.26
1163 1181 1.135094 ATCCCGATGTGATCTGCCTT 58.865 50.000 0.00 0.00 0.00 4.35
1164 1182 0.911769 TCCCGATGTGATCTGCCTTT 59.088 50.000 0.00 0.00 0.00 3.11
1172 1190 1.078143 GATCTGCCTTTCGCTGGGT 60.078 57.895 0.00 0.00 38.78 4.51
1173 1191 0.678048 GATCTGCCTTTCGCTGGGTT 60.678 55.000 0.00 0.00 38.78 4.11
1174 1192 0.962356 ATCTGCCTTTCGCTGGGTTG 60.962 55.000 0.00 0.00 38.78 3.77
1175 1193 1.898574 CTGCCTTTCGCTGGGTTGT 60.899 57.895 0.00 0.00 38.78 3.32
1176 1194 2.133742 CTGCCTTTCGCTGGGTTGTG 62.134 60.000 0.00 0.00 38.78 3.33
1178 1196 1.654220 CCTTTCGCTGGGTTGTGTG 59.346 57.895 0.00 0.00 0.00 3.82
1187 1205 3.223589 GGTTGTGTGTGGTGCCCC 61.224 66.667 0.00 0.00 0.00 5.80
1208 1226 3.631686 CCATCAAGGGTATCGATTGCAAA 59.368 43.478 1.71 0.00 0.00 3.68
1211 1229 4.584874 TCAAGGGTATCGATTGCAAAGAA 58.415 39.130 1.71 0.00 0.00 2.52
1212 1230 4.635765 TCAAGGGTATCGATTGCAAAGAAG 59.364 41.667 1.71 0.00 0.00 2.85
1213 1231 2.945668 AGGGTATCGATTGCAAAGAAGC 59.054 45.455 1.71 7.06 0.00 3.86
1214 1232 2.286418 GGGTATCGATTGCAAAGAAGCG 60.286 50.000 1.71 0.00 36.08 4.68
1217 1235 0.321210 TCGATTGCAAAGAAGCGGGA 60.321 50.000 1.71 0.00 35.48 5.14
1219 1237 1.453155 GATTGCAAAGAAGCGGGAGA 58.547 50.000 1.71 0.00 37.31 3.71
1220 1238 1.131315 GATTGCAAAGAAGCGGGAGAC 59.869 52.381 1.71 0.00 37.31 3.36
1224 1242 1.593196 CAAAGAAGCGGGAGACAACA 58.407 50.000 0.00 0.00 0.00 3.33
1226 1244 1.884235 AAGAAGCGGGAGACAACAAG 58.116 50.000 0.00 0.00 0.00 3.16
1230 1248 0.600255 AGCGGGAGACAACAAGTTCG 60.600 55.000 0.00 0.00 0.00 3.95
1242 1260 2.613691 ACAAGTTCGTGTTCACGTTCT 58.386 42.857 21.61 17.50 0.00 3.01
1243 1261 2.997986 ACAAGTTCGTGTTCACGTTCTT 59.002 40.909 21.61 20.97 0.00 2.52
1244 1262 3.061697 ACAAGTTCGTGTTCACGTTCTTC 59.938 43.478 21.61 10.74 0.00 2.87
1247 1265 1.847818 TCGTGTTCACGTTCTTCCAG 58.152 50.000 21.61 0.00 0.00 3.86
1250 1268 2.557317 GTGTTCACGTTCTTCCAGGAA 58.443 47.619 0.71 0.71 0.00 3.36
1251 1269 3.139077 GTGTTCACGTTCTTCCAGGAAT 58.861 45.455 1.09 0.00 0.00 3.01
1253 1271 2.742589 GTTCACGTTCTTCCAGGAATCC 59.257 50.000 1.09 0.00 0.00 3.01
1265 1283 1.559682 CAGGAATCCGGGAAGAGGAAA 59.440 52.381 0.00 0.00 41.69 3.13
1271 1289 2.193127 TCCGGGAAGAGGAAAGCATTA 58.807 47.619 0.00 0.00 34.33 1.90
1302 1320 3.075882 TCCCTGGATGTTTGACAAGGATT 59.924 43.478 0.00 0.00 27.50 3.01
1328 1346 2.299013 GGTTGTGGAGGATTTTGTTCCC 59.701 50.000 0.00 0.00 36.35 3.97
1351 1369 5.144100 CAGTAGAAGGATGGAGGACTATGT 58.856 45.833 0.00 0.00 0.00 2.29
1382 1400 3.521605 CCGATCTGGGTGCGAGTA 58.478 61.111 0.00 0.00 0.00 2.59
1385 1403 1.603172 CCGATCTGGGTGCGAGTATTC 60.603 57.143 0.00 0.00 0.00 1.75
1397 1415 2.815478 CGAGTATTCAACCTGCCTCTC 58.185 52.381 0.00 0.00 0.00 3.20
1408 1426 0.033228 CTGCCTCTCGGGATGATGAC 59.967 60.000 0.00 0.00 37.23 3.06
1409 1427 0.687427 TGCCTCTCGGGATGATGACA 60.687 55.000 0.00 0.00 37.23 3.58
1418 1436 1.144716 GATGATGACAGCGGAGGCA 59.855 57.895 0.00 0.00 43.41 4.75
1436 1454 0.467384 CAGCCGAGGAGATTGGTGAT 59.533 55.000 0.00 0.00 34.45 3.06
1448 1466 6.064060 GGAGATTGGTGATATCATTGGACAA 58.936 40.000 9.02 9.76 0.00 3.18
1450 1468 7.884877 GGAGATTGGTGATATCATTGGACAATA 59.115 37.037 9.02 0.00 0.00 1.90
1457 1475 7.094634 GGTGATATCATTGGACAATATGTGGAC 60.095 40.741 9.02 0.00 0.00 4.02
1472 1490 3.047280 GACGCCGACACCAATGCA 61.047 61.111 0.00 0.00 0.00 3.96
1511 1529 5.550403 AGGGAAGTATTTGAGGGTGAAAGTA 59.450 40.000 0.00 0.00 0.00 2.24
1523 1541 6.672218 TGAGGGTGAAAGTAAGAATGAGGATA 59.328 38.462 0.00 0.00 0.00 2.59
1529 1547 9.092876 GTGAAAGTAAGAATGAGGATAGACAAG 57.907 37.037 0.00 0.00 0.00 3.16
1532 1550 3.742433 AGAATGAGGATAGACAAGCCG 57.258 47.619 0.00 0.00 0.00 5.52
1535 1553 2.067365 TGAGGATAGACAAGCCGCTA 57.933 50.000 0.00 0.00 0.00 4.26
1556 1574 5.469421 GCTAATGAGAGGATTCACATTGGAG 59.531 44.000 12.58 4.95 41.79 3.86
1559 1577 3.453717 TGAGAGGATTCACATTGGAGGAG 59.546 47.826 0.00 0.00 0.00 3.69
1560 1578 2.776536 AGAGGATTCACATTGGAGGAGG 59.223 50.000 0.00 0.00 0.00 4.30
1567 1585 1.333636 ACATTGGAGGAGGAGGAGCG 61.334 60.000 0.00 0.00 0.00 5.03
1571 1589 3.151022 GAGGAGGAGGAGCGGGTG 61.151 72.222 0.00 0.00 0.00 4.61
1574 1592 3.462678 GAGGAGGAGCGGGTGGAC 61.463 72.222 0.00 0.00 0.00 4.02
1589 1607 3.319198 GACGGGGCAGGTGAAGGA 61.319 66.667 0.00 0.00 0.00 3.36
1597 1627 1.904032 CAGGTGAAGGAGAGGAGGC 59.096 63.158 0.00 0.00 0.00 4.70
1598 1628 0.906756 CAGGTGAAGGAGAGGAGGCA 60.907 60.000 0.00 0.00 0.00 4.75
1616 1646 4.265056 GGGAGTGGTTGGTGCCGT 62.265 66.667 0.00 0.00 0.00 5.68
1682 1712 7.973944 GGTATAATTGGACATTGTGAAAAGGAC 59.026 37.037 0.00 0.00 0.00 3.85
1724 1754 1.536662 AGAGAAGGCCCAGTTCGGT 60.537 57.895 0.00 0.00 0.00 4.69
1753 1783 4.821805 GCTTAAAGCTGATATGGGCTACAA 59.178 41.667 0.00 0.00 38.45 2.41
1774 1804 5.485353 ACAAGAGGAATAATCAGGACAGTGA 59.515 40.000 0.00 0.00 0.00 3.41
1786 1816 0.991920 GACAGTGAAGGATGGGGGAA 59.008 55.000 0.00 0.00 0.00 3.97
1787 1817 0.995024 ACAGTGAAGGATGGGGGAAG 59.005 55.000 0.00 0.00 0.00 3.46
1828 1858 2.732289 GCAAGAGCTTGGGGTTCAA 58.268 52.632 11.78 0.00 40.74 2.69
1874 1904 4.223700 AGTGGAAGTGATAGCTTGTCATGA 59.776 41.667 0.00 0.00 0.00 3.07
1877 1907 3.876274 AGTGATAGCTTGTCATGACGT 57.124 42.857 20.54 8.03 0.00 4.34
1906 1936 3.655810 CTCGGGACAGTGCTGGAGC 62.656 68.421 0.29 0.00 42.50 4.70
1944 1974 0.992695 GGGGGAGGAAGTTAACAGCT 59.007 55.000 8.61 0.00 0.00 4.24
1987 2017 1.473257 GGACAATACTGGATCGCAGCA 60.473 52.381 10.15 0.07 0.00 4.41
2019 2049 0.033011 GGAGTAGAGGGAGGCACAGA 60.033 60.000 0.00 0.00 0.00 3.41
2065 2134 3.662759 TGTGGTGAAGGAAAAAGAGGT 57.337 42.857 0.00 0.00 0.00 3.85
2069 2138 2.034685 GGTGAAGGAAAAAGAGGTGCAC 59.965 50.000 8.80 8.80 0.00 4.57
2089 2158 0.391661 GTTGCTTCGGCTGATGAGGA 60.392 55.000 12.42 0.00 42.37 3.71
2105 2174 0.613777 AGGAAAGGATGGTCGTGGAC 59.386 55.000 0.00 0.00 0.00 4.02
2118 2187 2.269978 GTGGACCCTGCACGTAGTA 58.730 57.895 0.00 0.00 41.61 1.82
2127 2196 1.517913 GCACGTAGTACGGGGAAGC 60.518 63.158 25.39 16.28 46.78 3.86
2137 2207 2.685999 GGGGAAGCCAAGGAGCAT 59.314 61.111 0.00 0.00 34.23 3.79
2158 2228 0.901580 CAAAGGAGGCAAGTGGGCAT 60.902 55.000 0.00 0.00 46.44 4.40
2163 2233 0.680921 GAGGCAAGTGGGCATAAGCA 60.681 55.000 0.00 0.00 46.44 3.91
2167 2237 1.545582 GCAAGTGGGCATAAGCAGAAA 59.454 47.619 0.00 0.00 44.61 2.52
2180 2250 7.255277 GGCATAAGCAGAAAACCTATAAGAAGG 60.255 40.741 0.00 0.00 44.61 3.46
2208 2278 1.335132 ACGGATAAGGGTGGCGATGT 61.335 55.000 0.00 0.00 0.00 3.06
2209 2279 0.179056 CGGATAAGGGTGGCGATGTT 60.179 55.000 0.00 0.00 0.00 2.71
2212 2282 3.751518 GGATAAGGGTGGCGATGTTAAT 58.248 45.455 0.00 0.00 0.00 1.40
2216 2286 0.100503 GGGTGGCGATGTTAATGTGC 59.899 55.000 0.00 0.00 0.00 4.57
2278 2348 1.997874 GGAGGAGCTGGATGGTGGT 60.998 63.158 0.00 0.00 0.00 4.16
2281 2351 1.559682 GAGGAGCTGGATGGTGGTAAA 59.440 52.381 0.00 0.00 0.00 2.01
2292 2362 0.781920 GGTGGTAAAAAGGGGAGGGT 59.218 55.000 0.00 0.00 0.00 4.34
2321 2409 2.909006 ACAGAGATGAAGGAGGCTGAAA 59.091 45.455 0.00 0.00 0.00 2.69
2323 2411 3.055240 CAGAGATGAAGGAGGCTGAAAGT 60.055 47.826 0.00 0.00 35.30 2.66
2328 2416 0.977395 AAGGAGGCTGAAAGTAGCGT 59.023 50.000 0.00 0.00 44.60 5.07
2329 2417 0.247736 AGGAGGCTGAAAGTAGCGTG 59.752 55.000 0.00 0.00 44.60 5.34
2334 2422 1.000145 GCTGAAAGTAGCGTGGTAGC 59.000 55.000 0.00 0.00 35.30 3.58
2370 2458 2.920384 TATATCGGCCGGGCTGCA 60.920 61.111 27.83 13.29 34.49 4.41
2509 2597 2.582052 TCCTTGCGGAGACAAAATTGT 58.418 42.857 0.00 0.00 38.14 2.71
2542 2630 2.872858 GAGTTGGATAGATTTCGGTGGC 59.127 50.000 0.00 0.00 0.00 5.01
2565 2653 2.223272 GCTAGGGCTAACGCAAATGAAC 60.223 50.000 0.00 0.00 38.10 3.18
2619 2707 0.252467 CTCTGTTCTGGAGGAGGGGT 60.252 60.000 0.00 0.00 0.00 4.95
2628 2716 1.627297 GGAGGAGGGGTGTGGATGTC 61.627 65.000 0.00 0.00 0.00 3.06
2637 2725 2.738521 GTGGATGTCACGCTGCGT 60.739 61.111 23.57 23.57 42.36 5.24
2646 2734 2.508439 ACGCTGCGTTCGTATGGG 60.508 61.111 23.57 0.00 36.35 4.00
2700 2788 1.343681 GGGGGTATGGTGTGGAGACTA 60.344 57.143 0.00 0.00 0.00 2.59
2709 2797 3.181426 TGGTGTGGAGACTAACTGGAGTA 60.181 47.826 0.00 0.00 0.00 2.59
2792 2880 2.231380 ATCACCAACGGGGAAGGCT 61.231 57.895 2.06 0.00 39.25 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 4.387559 CCACAAAGTAACGATCATCAACGA 59.612 41.667 0.00 0.00 0.00 3.85
95 96 1.153647 CGCCGTGCACTCCAGATAA 60.154 57.895 16.19 0.00 0.00 1.75
138 139 1.699083 TCAGTGGCAAATGGAGTCTGA 59.301 47.619 0.00 0.00 0.00 3.27
172 173 7.164230 AGAACTCTATGTCTGACAAGTAAGG 57.836 40.000 15.31 6.04 0.00 2.69
216 217 1.918293 TGGTACTGCTGTCCCCTGG 60.918 63.158 0.00 0.00 0.00 4.45
224 225 1.733041 CGTGGTCGTGGTACTGCTG 60.733 63.158 0.00 0.00 0.00 4.41
321 322 2.551912 CCTGCAAACCACACCGACC 61.552 63.158 0.00 0.00 0.00 4.79
324 325 1.603455 ATCCCTGCAAACCACACCG 60.603 57.895 0.00 0.00 0.00 4.94
447 448 7.275183 CCAGTATTTGGTTGATGTAGAGATCA 58.725 38.462 0.00 0.00 42.41 2.92
756 757 0.178958 ACCTATAGGGGCGGACTCTG 60.179 60.000 22.91 0.00 40.27 3.35
757 758 0.178958 CACCTATAGGGGCGGACTCT 60.179 60.000 22.91 0.00 40.27 3.24
758 759 1.186267 CCACCTATAGGGGCGGACTC 61.186 65.000 22.91 0.00 37.25 3.36
759 760 1.152312 CCACCTATAGGGGCGGACT 60.152 63.158 22.91 0.00 37.25 3.85
760 761 2.880380 GCCACCTATAGGGGCGGAC 61.880 68.421 26.14 14.84 40.16 4.79
761 762 2.525877 GCCACCTATAGGGGCGGA 60.526 66.667 26.14 0.00 40.16 5.54
764 765 1.991339 AAACCGCCACCTATAGGGGC 61.991 60.000 28.49 28.49 43.63 5.80
765 766 0.108019 GAAACCGCCACCTATAGGGG 59.892 60.000 22.91 19.11 41.66 4.79
766 767 0.108019 GGAAACCGCCACCTATAGGG 59.892 60.000 22.91 11.41 40.27 3.53
767 768 0.249741 CGGAAACCGCCACCTATAGG 60.250 60.000 17.73 17.73 41.17 2.57
768 769 3.284197 CGGAAACCGCCACCTATAG 57.716 57.895 0.00 0.00 41.17 1.31
779 780 2.159037 GTCGGATGAAGAAACGGAAACC 59.841 50.000 0.00 0.00 0.00 3.27
780 781 2.159881 CGTCGGATGAAGAAACGGAAAC 60.160 50.000 0.00 0.00 0.00 2.78
781 782 2.063266 CGTCGGATGAAGAAACGGAAA 58.937 47.619 0.00 0.00 0.00 3.13
782 783 1.270274 TCGTCGGATGAAGAAACGGAA 59.730 47.619 0.00 0.00 34.30 4.30
783 784 0.883153 TCGTCGGATGAAGAAACGGA 59.117 50.000 0.00 0.00 34.30 4.69
784 785 1.852895 GATCGTCGGATGAAGAAACGG 59.147 52.381 3.67 0.00 36.20 4.44
785 786 1.513178 CGATCGTCGGATGAAGAAACG 59.487 52.381 7.03 2.67 36.20 3.60
786 787 2.279136 CACGATCGTCGGATGAAGAAAC 59.721 50.000 19.84 0.00 45.59 2.78
787 788 2.526077 CACGATCGTCGGATGAAGAAA 58.474 47.619 19.84 0.00 45.59 2.52
788 789 1.202256 CCACGATCGTCGGATGAAGAA 60.202 52.381 19.84 0.00 45.59 2.52
789 790 0.380733 CCACGATCGTCGGATGAAGA 59.619 55.000 19.84 0.00 45.59 2.87
790 791 0.595053 CCCACGATCGTCGGATGAAG 60.595 60.000 25.55 8.44 45.59 3.02
791 792 1.435925 CCCACGATCGTCGGATGAA 59.564 57.895 25.55 0.00 45.59 2.57
792 793 2.486663 CCCCACGATCGTCGGATGA 61.487 63.158 30.31 1.78 45.59 2.92
793 794 2.027605 CCCCACGATCGTCGGATG 59.972 66.667 30.31 18.10 45.59 3.51
794 795 3.224324 CCCCCACGATCGTCGGAT 61.224 66.667 30.31 0.86 45.59 4.18
798 799 4.867599 GTCGCCCCCACGATCGTC 62.868 72.222 19.84 5.75 45.06 4.20
800 801 4.873129 CAGTCGCCCCCACGATCG 62.873 72.222 14.88 14.88 45.06 3.69
801 802 4.530857 CCAGTCGCCCCCACGATC 62.531 72.222 0.00 0.00 45.06 3.69
805 806 3.324108 TAACCCAGTCGCCCCCAC 61.324 66.667 0.00 0.00 0.00 4.61
806 807 3.006728 CTAACCCAGTCGCCCCCA 61.007 66.667 0.00 0.00 0.00 4.96
807 808 3.793888 CCTAACCCAGTCGCCCCC 61.794 72.222 0.00 0.00 0.00 5.40
808 809 3.793888 CCCTAACCCAGTCGCCCC 61.794 72.222 0.00 0.00 0.00 5.80
809 810 2.133359 AAACCCTAACCCAGTCGCCC 62.133 60.000 0.00 0.00 0.00 6.13
810 811 0.251033 AAAACCCTAACCCAGTCGCC 60.251 55.000 0.00 0.00 0.00 5.54
811 812 1.538512 GAAAAACCCTAACCCAGTCGC 59.461 52.381 0.00 0.00 0.00 5.19
812 813 2.156917 GGAAAAACCCTAACCCAGTCG 58.843 52.381 0.00 0.00 0.00 4.18
813 814 2.156917 CGGAAAAACCCTAACCCAGTC 58.843 52.381 0.00 0.00 34.64 3.51
814 815 1.776063 TCGGAAAAACCCTAACCCAGT 59.224 47.619 0.00 0.00 34.64 4.00
815 816 2.156917 GTCGGAAAAACCCTAACCCAG 58.843 52.381 0.00 0.00 34.64 4.45
816 817 1.202915 GGTCGGAAAAACCCTAACCCA 60.203 52.381 0.00 0.00 34.64 4.51
817 818 1.538047 GGTCGGAAAAACCCTAACCC 58.462 55.000 0.00 0.00 34.64 4.11
824 825 2.547826 CTAGATCGGGTCGGAAAAACC 58.452 52.381 0.00 0.00 35.97 3.27
825 826 1.931841 GCTAGATCGGGTCGGAAAAAC 59.068 52.381 0.00 0.00 0.00 2.43
826 827 1.470285 CGCTAGATCGGGTCGGAAAAA 60.470 52.381 0.00 0.00 0.00 1.94
827 828 0.101759 CGCTAGATCGGGTCGGAAAA 59.898 55.000 0.00 0.00 0.00 2.29
828 829 0.749091 TCGCTAGATCGGGTCGGAAA 60.749 55.000 0.00 0.00 0.00 3.13
829 830 0.536687 ATCGCTAGATCGGGTCGGAA 60.537 55.000 0.00 0.00 29.44 4.30
830 831 0.954449 GATCGCTAGATCGGGTCGGA 60.954 60.000 0.00 0.00 43.17 4.55
831 832 1.502640 GATCGCTAGATCGGGTCGG 59.497 63.158 0.00 0.00 43.17 4.79
839 840 0.595588 CGCAGACTGGATCGCTAGAT 59.404 55.000 4.26 0.00 40.38 1.98
840 841 0.748367 ACGCAGACTGGATCGCTAGA 60.748 55.000 4.26 0.00 0.00 2.43
841 842 0.945099 TACGCAGACTGGATCGCTAG 59.055 55.000 4.26 0.00 0.00 3.42
842 843 1.605753 ATACGCAGACTGGATCGCTA 58.394 50.000 4.26 0.00 0.00 4.26
843 844 0.747255 AATACGCAGACTGGATCGCT 59.253 50.000 4.26 0.00 0.00 4.93
844 845 1.132588 GAATACGCAGACTGGATCGC 58.867 55.000 4.26 0.00 0.00 4.58
845 846 1.603172 GGGAATACGCAGACTGGATCG 60.603 57.143 4.26 1.94 0.00 3.69
846 847 1.603172 CGGGAATACGCAGACTGGATC 60.603 57.143 4.26 0.00 0.00 3.36
847 848 0.389391 CGGGAATACGCAGACTGGAT 59.611 55.000 4.26 0.00 0.00 3.41
848 849 0.968901 ACGGGAATACGCAGACTGGA 60.969 55.000 4.26 0.00 37.37 3.86
849 850 0.527817 GACGGGAATACGCAGACTGG 60.528 60.000 4.26 0.00 37.37 4.00
850 851 0.866061 CGACGGGAATACGCAGACTG 60.866 60.000 0.00 0.00 37.37 3.51
851 852 1.310933 ACGACGGGAATACGCAGACT 61.311 55.000 0.00 0.00 37.37 3.24
852 853 0.457337 AACGACGGGAATACGCAGAC 60.457 55.000 0.00 0.00 37.37 3.51
853 854 0.179156 GAACGACGGGAATACGCAGA 60.179 55.000 0.00 0.00 37.37 4.26
854 855 0.179145 AGAACGACGGGAATACGCAG 60.179 55.000 0.00 0.00 37.37 5.18
855 856 0.244450 AAGAACGACGGGAATACGCA 59.756 50.000 0.00 0.00 37.37 5.24
856 857 0.919300 GAAGAACGACGGGAATACGC 59.081 55.000 0.00 0.00 37.37 4.42
857 858 1.553308 GGAAGAACGACGGGAATACG 58.447 55.000 0.00 0.00 40.31 3.06
858 859 1.553308 CGGAAGAACGACGGGAATAC 58.447 55.000 0.00 0.00 35.47 1.89
859 860 0.457035 CCGGAAGAACGACGGGAATA 59.543 55.000 0.00 0.00 43.69 1.75
860 861 1.217244 CCGGAAGAACGACGGGAAT 59.783 57.895 0.00 0.00 43.69 3.01
861 862 2.652530 CCGGAAGAACGACGGGAA 59.347 61.111 0.00 0.00 43.69 3.97
865 866 1.615107 GCAAGACCGGAAGAACGACG 61.615 60.000 9.46 0.00 35.47 5.12
866 867 1.615107 CGCAAGACCGGAAGAACGAC 61.615 60.000 9.46 0.00 43.02 4.34
867 868 1.372499 CGCAAGACCGGAAGAACGA 60.372 57.895 9.46 0.00 43.02 3.85
868 869 1.372499 TCGCAAGACCGGAAGAACG 60.372 57.895 9.46 6.52 45.01 3.95
869 870 4.667420 TCGCAAGACCGGAAGAAC 57.333 55.556 9.46 0.00 45.01 3.01
880 881 0.652592 GGTGTGGAATCGATCGCAAG 59.347 55.000 11.09 0.00 0.00 4.01
881 882 0.249120 AGGTGTGGAATCGATCGCAA 59.751 50.000 11.09 0.00 0.00 4.85
882 883 1.107945 TAGGTGTGGAATCGATCGCA 58.892 50.000 11.09 0.00 0.00 5.10
883 884 2.061773 CATAGGTGTGGAATCGATCGC 58.938 52.381 11.09 0.00 0.00 4.58
884 885 3.004839 ACTCATAGGTGTGGAATCGATCG 59.995 47.826 9.36 9.36 0.00 3.69
885 886 4.302455 CACTCATAGGTGTGGAATCGATC 58.698 47.826 0.00 0.00 35.43 3.69
886 887 3.493350 GCACTCATAGGTGTGGAATCGAT 60.493 47.826 11.12 0.00 38.59 3.59
887 888 2.159099 GCACTCATAGGTGTGGAATCGA 60.159 50.000 11.12 0.00 38.59 3.59
888 889 2.205074 GCACTCATAGGTGTGGAATCG 58.795 52.381 11.12 0.00 38.59 3.34
889 890 2.565841 GGCACTCATAGGTGTGGAATC 58.434 52.381 11.12 0.00 38.59 2.52
890 891 1.212935 GGGCACTCATAGGTGTGGAAT 59.787 52.381 11.12 0.00 38.59 3.01
891 892 0.618458 GGGCACTCATAGGTGTGGAA 59.382 55.000 11.12 0.00 38.59 3.53
892 893 0.252696 AGGGCACTCATAGGTGTGGA 60.253 55.000 11.12 0.00 38.59 4.02
893 894 1.414181 CTAGGGCACTCATAGGTGTGG 59.586 57.143 11.12 0.00 38.59 4.17
894 895 2.101582 GACTAGGGCACTCATAGGTGTG 59.898 54.545 0.00 5.27 40.56 3.82
895 896 2.389715 GACTAGGGCACTCATAGGTGT 58.610 52.381 0.00 0.00 39.21 4.16
896 897 1.689273 GGACTAGGGCACTCATAGGTG 59.311 57.143 0.00 0.00 39.91 4.00
897 898 1.413227 GGGACTAGGGCACTCATAGGT 60.413 57.143 0.00 0.00 34.32 3.08
898 899 1.343069 GGGACTAGGGCACTCATAGG 58.657 60.000 0.00 0.00 34.32 2.57
899 900 2.088104 TGGGACTAGGGCACTCATAG 57.912 55.000 0.00 0.00 35.98 2.23
900 901 2.609747 GATGGGACTAGGGCACTCATA 58.390 52.381 0.00 0.00 0.00 2.15
901 902 1.428869 GATGGGACTAGGGCACTCAT 58.571 55.000 0.00 0.00 0.00 2.90
902 903 0.691078 GGATGGGACTAGGGCACTCA 60.691 60.000 0.00 0.00 0.00 3.41
903 904 0.691078 TGGATGGGACTAGGGCACTC 60.691 60.000 0.00 0.00 0.00 3.51
904 905 0.983378 GTGGATGGGACTAGGGCACT 60.983 60.000 0.00 0.00 0.00 4.40
905 906 1.527370 GTGGATGGGACTAGGGCAC 59.473 63.158 0.00 0.00 0.00 5.01
906 907 1.692749 GGTGGATGGGACTAGGGCA 60.693 63.158 0.00 0.00 0.00 5.36
907 908 1.062488 ATGGTGGATGGGACTAGGGC 61.062 60.000 0.00 0.00 0.00 5.19
908 909 2.415983 TATGGTGGATGGGACTAGGG 57.584 55.000 0.00 0.00 0.00 3.53
909 910 2.039084 GCTTATGGTGGATGGGACTAGG 59.961 54.545 0.00 0.00 0.00 3.02
910 911 2.039084 GGCTTATGGTGGATGGGACTAG 59.961 54.545 0.00 0.00 0.00 2.57
911 912 2.054799 GGCTTATGGTGGATGGGACTA 58.945 52.381 0.00 0.00 0.00 2.59
912 913 0.846693 GGCTTATGGTGGATGGGACT 59.153 55.000 0.00 0.00 0.00 3.85
913 914 0.846693 AGGCTTATGGTGGATGGGAC 59.153 55.000 0.00 0.00 0.00 4.46
914 915 1.494721 GAAGGCTTATGGTGGATGGGA 59.505 52.381 0.00 0.00 0.00 4.37
955 958 3.305881 GCCTAGGTCAGTGTTTTACGACT 60.306 47.826 11.31 0.00 35.02 4.18
993 1010 4.124126 ACCCCCTCCATCTCCCCC 62.124 72.222 0.00 0.00 0.00 5.40
996 1013 3.551407 GCGACCCCCTCCATCTCC 61.551 72.222 0.00 0.00 0.00 3.71
998 1015 2.765807 CTGCGACCCCCTCCATCT 60.766 66.667 0.00 0.00 0.00 2.90
1005 1022 3.171388 ATCATCCCTGCGACCCCC 61.171 66.667 0.00 0.00 0.00 5.40
1011 1028 0.107017 AACCCTTCATCATCCCTGCG 60.107 55.000 0.00 0.00 0.00 5.18
1014 1031 1.288932 CCCAAACCCTTCATCATCCCT 59.711 52.381 0.00 0.00 0.00 4.20
1018 1035 0.712380 AGCCCCAAACCCTTCATCAT 59.288 50.000 0.00 0.00 0.00 2.45
1025 1042 3.966543 CCGACAGCCCCAAACCCT 61.967 66.667 0.00 0.00 0.00 4.34
1030 1047 3.003173 CTCCTCCGACAGCCCCAA 61.003 66.667 0.00 0.00 0.00 4.12
1033 1050 3.151022 CTCCTCCTCCGACAGCCC 61.151 72.222 0.00 0.00 0.00 5.19
1034 1051 1.671901 CTTCTCCTCCTCCGACAGCC 61.672 65.000 0.00 0.00 0.00 4.85
1038 1055 1.107945 CCTTCTTCTCCTCCTCCGAC 58.892 60.000 0.00 0.00 0.00 4.79
1044 1061 1.557371 CTTGACCCCTTCTTCTCCTCC 59.443 57.143 0.00 0.00 0.00 4.30
1052 1069 4.369872 AGATCTTGATCTTGACCCCTTCT 58.630 43.478 7.27 0.00 0.00 2.85
1059 1076 2.123342 CGCCGAGATCTTGATCTTGAC 58.877 52.381 22.78 14.13 34.67 3.18
1060 1077 2.024414 TCGCCGAGATCTTGATCTTGA 58.976 47.619 22.78 12.65 34.67 3.02
1063 1081 1.339610 CCTTCGCCGAGATCTTGATCT 59.660 52.381 11.89 12.39 0.00 2.75
1069 1087 1.028905 CTTCTCCTTCGCCGAGATCT 58.971 55.000 0.00 0.00 36.30 2.75
1078 1096 1.205893 CACTCTTCCCCTTCTCCTTCG 59.794 57.143 0.00 0.00 0.00 3.79
1094 1112 2.475466 CGCATGCATCCCCACACTC 61.475 63.158 19.57 0.00 0.00 3.51
1095 1113 2.438975 CGCATGCATCCCCACACT 60.439 61.111 19.57 0.00 0.00 3.55
1096 1114 3.520862 CCGCATGCATCCCCACAC 61.521 66.667 19.57 0.00 0.00 3.82
1097 1115 4.045781 ACCGCATGCATCCCCACA 62.046 61.111 19.57 0.00 0.00 4.17
1099 1117 4.818863 CCACCGCATGCATCCCCA 62.819 66.667 19.57 0.00 0.00 4.96
1102 1120 4.504596 TCCCCACCGCATGCATCC 62.505 66.667 19.57 0.00 0.00 3.51
1104 1122 2.288642 ATCTTCCCCACCGCATGCAT 62.289 55.000 19.57 1.32 0.00 3.96
1105 1123 2.497792 AATCTTCCCCACCGCATGCA 62.498 55.000 19.57 0.00 0.00 3.96
1106 1124 1.322538 AAATCTTCCCCACCGCATGC 61.323 55.000 7.91 7.91 0.00 4.06
1109 1127 0.178975 ACAAAATCTTCCCCACCGCA 60.179 50.000 0.00 0.00 0.00 5.69
1115 1133 1.095600 GCTCCGACAAAATCTTCCCC 58.904 55.000 0.00 0.00 0.00 4.81
1118 1136 0.097150 GCCGCTCCGACAAAATCTTC 59.903 55.000 0.00 0.00 0.00 2.87
1122 1140 2.100631 CGAGCCGCTCCGACAAAAT 61.101 57.895 14.85 0.00 0.00 1.82
1139 1157 2.661566 GATCACATCGGGATGCGCG 61.662 63.158 0.00 0.00 42.39 6.86
1148 1166 0.302890 GCGAAAGGCAGATCACATCG 59.697 55.000 0.00 1.38 42.87 3.84
1160 1178 1.101049 ACACACAACCCAGCGAAAGG 61.101 55.000 0.00 0.00 0.00 3.11
1163 1181 1.821759 CCACACACAACCCAGCGAA 60.822 57.895 0.00 0.00 0.00 4.70
1164 1182 2.203139 CCACACACAACCCAGCGA 60.203 61.111 0.00 0.00 0.00 4.93
1187 1205 4.576053 TCTTTGCAATCGATACCCTTGATG 59.424 41.667 0.00 0.00 0.00 3.07
1196 1214 1.939934 CCCGCTTCTTTGCAATCGATA 59.060 47.619 0.00 0.00 0.00 2.92
1198 1216 0.321210 TCCCGCTTCTTTGCAATCGA 60.321 50.000 0.00 0.00 0.00 3.59
1208 1226 0.759346 ACTTGTTGTCTCCCGCTTCT 59.241 50.000 0.00 0.00 0.00 2.85
1211 1229 0.600255 CGAACTTGTTGTCTCCCGCT 60.600 55.000 0.00 0.00 0.00 5.52
1212 1230 0.878961 ACGAACTTGTTGTCTCCCGC 60.879 55.000 0.00 0.00 0.00 6.13
1213 1231 0.859232 CACGAACTTGTTGTCTCCCG 59.141 55.000 0.00 0.00 0.00 5.14
1214 1232 1.949465 ACACGAACTTGTTGTCTCCC 58.051 50.000 0.00 0.00 0.00 4.30
1230 1248 2.234300 TCCTGGAAGAACGTGAACAC 57.766 50.000 0.00 0.00 34.07 3.32
1242 1260 1.204146 CTCTTCCCGGATTCCTGGAA 58.796 55.000 22.78 22.78 43.02 3.53
1243 1261 0.691078 CCTCTTCCCGGATTCCTGGA 60.691 60.000 11.54 11.54 41.53 3.86
1244 1262 0.691078 TCCTCTTCCCGGATTCCTGG 60.691 60.000 0.73 6.82 38.61 4.45
1247 1265 1.747552 GCTTTCCTCTTCCCGGATTCC 60.748 57.143 0.73 0.00 0.00 3.01
1250 1268 1.216990 ATGCTTTCCTCTTCCCGGAT 58.783 50.000 0.73 0.00 0.00 4.18
1251 1269 0.991920 AATGCTTTCCTCTTCCCGGA 59.008 50.000 0.73 0.00 0.00 5.14
1253 1271 3.543680 TCTAATGCTTTCCTCTTCCCG 57.456 47.619 0.00 0.00 0.00 5.14
1265 1283 2.374504 CCAGGGACCATCATCTAATGCT 59.625 50.000 0.00 0.00 0.00 3.79
1271 1289 2.203120 ACATCCAGGGACCATCATCT 57.797 50.000 0.00 0.00 0.00 2.90
1302 1320 2.697751 CAAAATCCTCCACAACCACCAA 59.302 45.455 0.00 0.00 0.00 3.67
1328 1346 5.010516 CACATAGTCCTCCATCCTTCTACTG 59.989 48.000 0.00 0.00 0.00 2.74
1351 1369 3.556213 CCAGATCGGGACACTGTTAAACA 60.556 47.826 5.91 0.00 0.00 2.83
1397 1415 1.300465 CTCCGCTGTCATCATCCCG 60.300 63.158 0.00 0.00 0.00 5.14
1418 1436 2.088104 TATCACCAATCTCCTCGGCT 57.912 50.000 0.00 0.00 0.00 5.52
1436 1454 4.754618 GCGTCCACATATTGTCCAATGATA 59.245 41.667 2.80 0.00 32.50 2.15
1448 1466 1.143183 GGTGTCGGCGTCCACATAT 59.857 57.895 25.12 0.00 33.19 1.78
1450 1468 2.463589 ATTGGTGTCGGCGTCCACAT 62.464 55.000 25.12 13.72 33.19 3.21
1457 1475 2.108514 ATCTGCATTGGTGTCGGCG 61.109 57.895 0.00 0.00 0.00 6.46
1478 1496 5.397899 CCTCAAATACTTCCCTATGGCAGAA 60.398 44.000 0.00 0.00 0.00 3.02
1479 1497 4.103153 CCTCAAATACTTCCCTATGGCAGA 59.897 45.833 0.00 0.00 0.00 4.26
1480 1498 4.392940 CCTCAAATACTTCCCTATGGCAG 58.607 47.826 0.00 0.00 0.00 4.85
1484 1502 5.630415 TCACCCTCAAATACTTCCCTATG 57.370 43.478 0.00 0.00 0.00 2.23
1511 1529 3.742640 GCGGCTTGTCTATCCTCATTCTT 60.743 47.826 0.00 0.00 0.00 2.52
1523 1541 1.137872 CCTCTCATTAGCGGCTTGTCT 59.862 52.381 8.26 0.00 0.00 3.41
1529 1547 2.139118 GTGAATCCTCTCATTAGCGGC 58.861 52.381 0.00 0.00 0.00 6.53
1532 1550 5.371526 TCCAATGTGAATCCTCTCATTAGC 58.628 41.667 2.99 0.00 41.57 3.09
1535 1553 4.476113 TCCTCCAATGTGAATCCTCTCATT 59.524 41.667 0.00 0.00 43.32 2.57
1556 1574 4.779733 TCCACCCGCTCCTCCTCC 62.780 72.222 0.00 0.00 0.00 4.30
1571 1589 4.410400 CCTTCACCTGCCCCGTCC 62.410 72.222 0.00 0.00 0.00 4.79
1574 1592 3.003173 TCTCCTTCACCTGCCCCG 61.003 66.667 0.00 0.00 0.00 5.73
1578 1596 1.904032 CCTCCTCTCCTTCACCTGC 59.096 63.158 0.00 0.00 0.00 4.85
1579 1597 0.906756 TGCCTCCTCTCCTTCACCTG 60.907 60.000 0.00 0.00 0.00 4.00
1584 1602 1.002274 TCCCTGCCTCCTCTCCTTC 59.998 63.158 0.00 0.00 0.00 3.46
1589 1607 2.040278 CCACTCCCTGCCTCCTCT 59.960 66.667 0.00 0.00 0.00 3.69
1597 1627 2.282462 GGCACCAACCACTCCCTG 60.282 66.667 0.00 0.00 0.00 4.45
1598 1628 3.953775 CGGCACCAACCACTCCCT 61.954 66.667 0.00 0.00 0.00 4.20
1682 1712 2.462456 TCTTGAGCTTAGTGGCACAG 57.538 50.000 21.41 10.57 41.80 3.66
1724 1754 3.466836 CATATCAGCTTTAAGCCACCGA 58.533 45.455 13.84 5.93 43.77 4.69
1753 1783 5.130145 CCTTCACTGTCCTGATTATTCCTCT 59.870 44.000 0.00 0.00 0.00 3.69
1774 1804 1.935931 CCACCCTTCCCCCATCCTT 60.936 63.158 0.00 0.00 0.00 3.36
1786 1816 4.342086 TTCCCCGCCTACCACCCT 62.342 66.667 0.00 0.00 0.00 4.34
1787 1817 3.793888 CTTCCCCGCCTACCACCC 61.794 72.222 0.00 0.00 0.00 4.61
1828 1858 4.371681 ACCACTCCTACCATTTGACCTAT 58.628 43.478 0.00 0.00 0.00 2.57
1874 1904 2.361438 GTCCCGAGAATCATCCTTACGT 59.639 50.000 0.00 0.00 33.17 3.57
1877 1907 3.384789 CACTGTCCCGAGAATCATCCTTA 59.615 47.826 0.00 0.00 33.17 2.69
1906 1936 2.033194 GTTTCGACCTTCCGGCCAG 61.033 63.158 2.24 0.00 0.00 4.85
1919 1949 0.609662 TAACTTCCTCCCCCGTTTCG 59.390 55.000 0.00 0.00 0.00 3.46
1944 1974 0.898320 CTCGAGCCCTTCTTGGAAGA 59.102 55.000 0.00 0.00 38.35 2.87
1954 1984 3.757059 TATTGTCCCGTCTCGAGCCCT 62.757 57.143 7.81 0.00 0.00 5.19
2004 2034 1.379977 CCGTCTGTGCCTCCCTCTA 60.380 63.158 0.00 0.00 0.00 2.43
2019 2049 0.610687 CCTCCTTTCTGCTTCTCCGT 59.389 55.000 0.00 0.00 0.00 4.69
2069 2138 1.699656 CCTCATCAGCCGAAGCAACG 61.700 60.000 0.00 0.00 43.56 4.10
2105 2174 2.493030 CCCGTACTACGTGCAGGG 59.507 66.667 11.67 0.00 40.58 4.45
2111 2180 0.899717 TTGGCTTCCCCGTACTACGT 60.900 55.000 7.79 0.00 40.58 3.57
2118 2187 4.035102 GCTCCTTGGCTTCCCCGT 62.035 66.667 0.00 0.00 35.87 5.28
2127 2196 0.815734 CTCCTTTGCATGCTCCTTGG 59.184 55.000 20.33 13.32 0.00 3.61
2137 2207 1.531365 CCCACTTGCCTCCTTTGCA 60.531 57.895 0.00 0.00 36.84 4.08
2180 2250 1.590792 CCTTATCCGTCCGGCGAAC 60.591 63.158 17.96 0.00 44.77 3.95
2208 2278 1.339631 CCTTCTCCCCACGCACATTAA 60.340 52.381 0.00 0.00 0.00 1.40
2209 2279 0.251916 CCTTCTCCCCACGCACATTA 59.748 55.000 0.00 0.00 0.00 1.90
2212 2282 2.847234 ACCTTCTCCCCACGCACA 60.847 61.111 0.00 0.00 0.00 4.57
2216 2286 1.302511 CCAACACCTTCTCCCCACG 60.303 63.158 0.00 0.00 0.00 4.94
2278 2348 4.228895 GTCTCCATAACCCTCCCCTTTTTA 59.771 45.833 0.00 0.00 0.00 1.52
2281 2351 2.206223 GTCTCCATAACCCTCCCCTTT 58.794 52.381 0.00 0.00 0.00 3.11
2292 2362 4.898265 CCTCCTTCATCTCTGTCTCCATAA 59.102 45.833 0.00 0.00 0.00 1.90
2302 2372 3.180507 ACTTTCAGCCTCCTTCATCTCT 58.819 45.455 0.00 0.00 0.00 3.10
2321 2409 0.611062 TCTGGTGCTACCACGCTACT 60.611 55.000 4.16 0.00 44.79 2.57
2323 2411 1.888018 GTCTGGTGCTACCACGCTA 59.112 57.895 4.16 0.00 44.79 4.26
2334 2422 0.532862 AGTGTTTGCTCCGTCTGGTG 60.533 55.000 0.00 0.00 36.30 4.17
2509 2597 7.921041 ATCTATCCAACTCCTAATTCACTGA 57.079 36.000 0.00 0.00 0.00 3.41
2516 2604 6.464465 CCACCGAAATCTATCCAACTCCTAAT 60.464 42.308 0.00 0.00 0.00 1.73
2517 2605 5.163343 CCACCGAAATCTATCCAACTCCTAA 60.163 44.000 0.00 0.00 0.00 2.69
2518 2606 4.344102 CCACCGAAATCTATCCAACTCCTA 59.656 45.833 0.00 0.00 0.00 2.94
2542 2630 1.331756 CATTTGCGTTAGCCCTAGCAG 59.668 52.381 0.00 0.00 44.33 4.24
2565 2653 0.174845 TACCTTCAGGATTCCACGCG 59.825 55.000 3.53 3.53 38.94 6.01
2619 2707 2.738139 CGCAGCGTGACATCCACA 60.738 61.111 6.65 0.00 45.98 4.17
2628 2716 2.695055 CCATACGAACGCAGCGTG 59.305 61.111 23.78 12.84 39.99 5.34
2637 2725 1.837439 ACATGCCTTCTCCCATACGAA 59.163 47.619 0.00 0.00 0.00 3.85
2646 2734 2.715046 TCAACATCCACATGCCTTCTC 58.285 47.619 0.00 0.00 32.57 2.87
2700 2788 2.664015 GACTCCCCGTATACTCCAGTT 58.336 52.381 0.56 0.00 0.00 3.16
2775 2863 2.852075 AGCCTTCCCCGTTGGTGA 60.852 61.111 0.00 0.00 34.77 4.02
2792 2880 1.644509 ATCTCCTACACACAGCCACA 58.355 50.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.