Multiple sequence alignment - TraesCS2D01G499000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G499000 chr2D 100.000 3071 0 0 1 3071 594104692 594101622 0.000000e+00 5672
1 TraesCS2D01G499000 chr2B 95.319 1410 56 5 1668 3071 721113989 721112584 0.000000e+00 2230
2 TraesCS2D01G499000 chr2B 85.284 564 26 24 787 1320 721114936 721114400 2.100000e-146 529
3 TraesCS2D01G499000 chr2B 87.415 294 20 10 445 724 721115257 721114967 3.820000e-84 322
4 TraesCS2D01G499000 chr2A 94.189 1411 66 6 1668 3071 728759423 728758022 0.000000e+00 2137
5 TraesCS2D01G499000 chr2A 82.007 817 59 40 403 1194 728760724 728759971 5.630000e-172 614
6 TraesCS2D01G499000 chr6A 96.429 364 7 2 1 364 557950390 557950033 2.040000e-166 595
7 TraesCS2D01G499000 chr6B 95.330 364 11 2 1 364 35694351 35694708 9.550000e-160 573
8 TraesCS2D01G499000 chr6B 91.209 364 26 3 1 364 501502335 501502692 9.900000e-135 490
9 TraesCS2D01G499000 chr4A 91.758 364 24 2 1 364 579534698 579535055 4.570000e-138 501
10 TraesCS2D01G499000 chr3A 87.637 364 31 5 1 364 391497972 391498321 7.930000e-111 411
11 TraesCS2D01G499000 chr7A 91.489 282 18 2 83 364 643182835 643183110 1.730000e-102 383


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G499000 chr2D 594101622 594104692 3070 True 5672.0 5672 100.000000 1 3071 1 chr2D.!!$R1 3070
1 TraesCS2D01G499000 chr2B 721112584 721115257 2673 True 1027.0 2230 89.339333 445 3071 3 chr2B.!!$R1 2626
2 TraesCS2D01G499000 chr2A 728758022 728760724 2702 True 1375.5 2137 88.098000 403 3071 2 chr2A.!!$R1 2668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 231 0.030369 GTCTGTGTTGACGACGGTCT 59.970 55.0 6.57 0.0 43.79 3.85 F
327 328 0.036388 AATGTGTCCTCGCGTTCCAT 60.036 50.0 5.77 0.0 0.00 3.41 F
1339 1428 0.032615 CCTCTCTGCTGGGGACTAGT 60.033 60.0 0.00 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1320 1374 0.032615 ACTAGTCCCCAGCAGAGAGG 60.033 60.0 0.0 0.0 0.0 3.69 R
1501 1601 0.105760 AACAGGACAAATGGGGCACA 60.106 50.0 0.0 0.0 0.0 4.57 R
2859 3074 1.012486 GTCTTCACGCCGTAACCCAG 61.012 60.0 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.987408 TCAACATATCTGCATTTGGGTG 57.013 40.909 0.00 0.00 0.00 4.61
22 23 4.343231 TCAACATATCTGCATTTGGGTGT 58.657 39.130 0.00 0.00 0.00 4.16
23 24 4.771577 TCAACATATCTGCATTTGGGTGTT 59.228 37.500 0.00 0.00 0.00 3.32
24 25 4.724074 ACATATCTGCATTTGGGTGTTG 57.276 40.909 0.00 0.00 0.00 3.33
25 26 4.343231 ACATATCTGCATTTGGGTGTTGA 58.657 39.130 0.00 0.00 0.00 3.18
26 27 4.158394 ACATATCTGCATTTGGGTGTTGAC 59.842 41.667 0.00 0.00 0.00 3.18
27 28 0.950836 TCTGCATTTGGGTGTTGACG 59.049 50.000 0.00 0.00 0.00 4.35
28 29 0.950836 CTGCATTTGGGTGTTGACGA 59.049 50.000 0.00 0.00 0.00 4.20
29 30 1.336440 CTGCATTTGGGTGTTGACGAA 59.664 47.619 0.00 0.00 0.00 3.85
30 31 1.959985 TGCATTTGGGTGTTGACGAAT 59.040 42.857 0.00 0.00 0.00 3.34
31 32 2.288091 TGCATTTGGGTGTTGACGAATG 60.288 45.455 0.00 0.00 0.00 2.67
32 33 2.327568 CATTTGGGTGTTGACGAATGC 58.672 47.619 0.00 0.00 0.00 3.56
33 34 1.393603 TTTGGGTGTTGACGAATGCA 58.606 45.000 0.00 0.00 0.00 3.96
34 35 0.665835 TTGGGTGTTGACGAATGCAC 59.334 50.000 0.00 0.00 0.00 4.57
35 36 0.464554 TGGGTGTTGACGAATGCACA 60.465 50.000 0.00 0.00 33.88 4.57
36 37 0.881118 GGGTGTTGACGAATGCACAT 59.119 50.000 0.00 0.00 33.88 3.21
37 38 1.401409 GGGTGTTGACGAATGCACATG 60.401 52.381 0.00 0.00 33.88 3.21
38 39 1.535028 GGTGTTGACGAATGCACATGA 59.465 47.619 0.00 0.00 33.88 3.07
39 40 2.413239 GGTGTTGACGAATGCACATGAG 60.413 50.000 0.00 0.00 33.88 2.90
40 41 2.224079 GTGTTGACGAATGCACATGAGT 59.776 45.455 0.00 0.00 32.62 3.41
57 58 7.334844 ACATGAGTGACTCAATATAACTCGA 57.665 36.000 20.26 0.00 44.04 4.04
58 59 7.772166 ACATGAGTGACTCAATATAACTCGAA 58.228 34.615 20.26 0.00 44.04 3.71
59 60 8.251026 ACATGAGTGACTCAATATAACTCGAAA 58.749 33.333 20.26 0.00 44.04 3.46
60 61 8.750416 CATGAGTGACTCAATATAACTCGAAAG 58.250 37.037 20.26 0.00 44.04 2.62
61 62 7.258441 TGAGTGACTCAATATAACTCGAAAGG 58.742 38.462 13.74 0.00 40.10 3.11
62 63 7.122204 TGAGTGACTCAATATAACTCGAAAGGA 59.878 37.037 13.74 0.00 40.10 3.36
63 64 7.837863 AGTGACTCAATATAACTCGAAAGGAA 58.162 34.615 0.00 0.00 0.00 3.36
64 65 7.976734 AGTGACTCAATATAACTCGAAAGGAAG 59.023 37.037 0.00 0.00 0.00 3.46
65 66 6.757010 TGACTCAATATAACTCGAAAGGAAGC 59.243 38.462 0.00 0.00 0.00 3.86
66 67 5.749109 ACTCAATATAACTCGAAAGGAAGCG 59.251 40.000 0.00 0.00 0.00 4.68
67 68 5.898174 TCAATATAACTCGAAAGGAAGCGA 58.102 37.500 0.00 0.00 35.01 4.93
68 69 5.747197 TCAATATAACTCGAAAGGAAGCGAC 59.253 40.000 0.00 0.00 32.51 5.19
69 70 3.587797 ATAACTCGAAAGGAAGCGACA 57.412 42.857 0.00 0.00 32.51 4.35
70 71 2.234300 AACTCGAAAGGAAGCGACAA 57.766 45.000 0.00 0.00 32.51 3.18
71 72 1.784525 ACTCGAAAGGAAGCGACAAG 58.215 50.000 0.00 0.00 32.51 3.16
72 73 1.340248 ACTCGAAAGGAAGCGACAAGA 59.660 47.619 0.00 0.00 32.51 3.02
73 74 1.989165 CTCGAAAGGAAGCGACAAGAG 59.011 52.381 0.00 0.00 32.51 2.85
74 75 1.071605 CGAAAGGAAGCGACAAGAGG 58.928 55.000 0.00 0.00 0.00 3.69
75 76 0.799393 GAAAGGAAGCGACAAGAGGC 59.201 55.000 0.00 0.00 0.00 4.70
76 77 0.398318 AAAGGAAGCGACAAGAGGCT 59.602 50.000 0.00 0.00 42.33 4.58
80 81 3.706055 AAGCGACAAGAGGCTTCAA 57.294 47.368 0.00 0.00 45.86 2.69
81 82 1.230324 AAGCGACAAGAGGCTTCAAC 58.770 50.000 0.00 0.00 45.86 3.18
82 83 0.394565 AGCGACAAGAGGCTTCAACT 59.605 50.000 0.00 0.00 35.61 3.16
83 84 0.514691 GCGACAAGAGGCTTCAACTG 59.485 55.000 0.00 0.00 0.00 3.16
84 85 1.151668 CGACAAGAGGCTTCAACTGG 58.848 55.000 0.00 0.00 0.00 4.00
85 86 1.270305 CGACAAGAGGCTTCAACTGGA 60.270 52.381 0.00 0.00 0.00 3.86
86 87 2.421619 GACAAGAGGCTTCAACTGGAG 58.578 52.381 0.00 0.00 0.00 3.86
87 88 1.072965 ACAAGAGGCTTCAACTGGAGG 59.927 52.381 0.00 0.00 0.00 4.30
91 92 3.435186 GCTTCAACTGGAGGCGCC 61.435 66.667 21.89 21.89 38.95 6.53
92 93 3.121030 CTTCAACTGGAGGCGCCG 61.121 66.667 23.20 9.47 40.66 6.46
93 94 3.589654 CTTCAACTGGAGGCGCCGA 62.590 63.158 23.20 7.40 40.66 5.54
94 95 3.876589 TTCAACTGGAGGCGCCGAC 62.877 63.158 23.20 18.71 40.66 4.79
95 96 4.379243 CAACTGGAGGCGCCGACT 62.379 66.667 23.20 2.64 40.66 4.18
96 97 3.626924 AACTGGAGGCGCCGACTT 61.627 61.111 23.20 2.15 40.66 3.01
97 98 3.591254 AACTGGAGGCGCCGACTTC 62.591 63.158 23.20 13.30 40.66 3.01
98 99 3.764466 CTGGAGGCGCCGACTTCT 61.764 66.667 23.20 0.68 40.66 2.85
99 100 3.997064 CTGGAGGCGCCGACTTCTG 62.997 68.421 23.20 10.01 40.66 3.02
100 101 4.821589 GGAGGCGCCGACTTCTGG 62.822 72.222 23.20 0.00 0.00 3.86
101 102 4.070552 GAGGCGCCGACTTCTGGT 62.071 66.667 23.20 0.00 0.00 4.00
102 103 4.379243 AGGCGCCGACTTCTGGTG 62.379 66.667 23.20 0.00 40.02 4.17
103 104 4.681978 GGCGCCGACTTCTGGTGT 62.682 66.667 12.58 0.00 39.23 4.16
104 105 3.414700 GCGCCGACTTCTGGTGTG 61.415 66.667 0.00 0.00 39.23 3.82
105 106 2.029073 CGCCGACTTCTGGTGTGT 59.971 61.111 0.00 0.00 32.27 3.72
106 107 1.287815 CGCCGACTTCTGGTGTGTA 59.712 57.895 0.00 0.00 32.27 2.90
107 108 0.319211 CGCCGACTTCTGGTGTGTAA 60.319 55.000 0.00 0.00 32.27 2.41
108 109 1.671850 CGCCGACTTCTGGTGTGTAAT 60.672 52.381 0.00 0.00 32.27 1.89
109 110 2.000447 GCCGACTTCTGGTGTGTAATC 59.000 52.381 0.00 0.00 0.00 1.75
110 111 2.353803 GCCGACTTCTGGTGTGTAATCT 60.354 50.000 0.00 0.00 0.00 2.40
111 112 3.512680 CCGACTTCTGGTGTGTAATCTC 58.487 50.000 0.00 0.00 0.00 2.75
112 113 3.056821 CCGACTTCTGGTGTGTAATCTCA 60.057 47.826 0.00 0.00 0.00 3.27
113 114 4.382040 CCGACTTCTGGTGTGTAATCTCAT 60.382 45.833 0.00 0.00 0.00 2.90
114 115 5.171476 CGACTTCTGGTGTGTAATCTCATT 58.829 41.667 0.00 0.00 0.00 2.57
115 116 5.062683 CGACTTCTGGTGTGTAATCTCATTG 59.937 44.000 0.00 0.00 0.00 2.82
116 117 5.869579 ACTTCTGGTGTGTAATCTCATTGT 58.130 37.500 0.00 0.00 0.00 2.71
117 118 5.702670 ACTTCTGGTGTGTAATCTCATTGTG 59.297 40.000 0.00 0.00 0.00 3.33
118 119 4.578871 TCTGGTGTGTAATCTCATTGTGG 58.421 43.478 0.00 0.00 0.00 4.17
119 120 4.285775 TCTGGTGTGTAATCTCATTGTGGA 59.714 41.667 0.00 0.00 0.00 4.02
120 121 4.323417 TGGTGTGTAATCTCATTGTGGAC 58.677 43.478 0.00 0.00 0.00 4.02
121 122 4.202409 TGGTGTGTAATCTCATTGTGGACA 60.202 41.667 0.00 0.00 0.00 4.02
122 123 4.943705 GGTGTGTAATCTCATTGTGGACAT 59.056 41.667 0.00 0.00 0.00 3.06
123 124 6.112734 GGTGTGTAATCTCATTGTGGACATA 58.887 40.000 0.00 0.00 0.00 2.29
124 125 6.767902 GGTGTGTAATCTCATTGTGGACATAT 59.232 38.462 0.00 0.00 0.00 1.78
125 126 7.254898 GGTGTGTAATCTCATTGTGGACATATG 60.255 40.741 0.00 0.00 0.00 1.78
126 127 6.260714 TGTGTAATCTCATTGTGGACATATGC 59.739 38.462 1.58 0.00 0.00 3.14
127 128 5.764686 TGTAATCTCATTGTGGACATATGCC 59.235 40.000 1.58 5.94 0.00 4.40
128 129 3.929955 TCTCATTGTGGACATATGCCA 57.070 42.857 12.98 12.98 0.00 4.92
129 130 4.442401 TCTCATTGTGGACATATGCCAT 57.558 40.909 18.02 4.27 37.81 4.40
130 131 5.565455 TCTCATTGTGGACATATGCCATA 57.435 39.130 18.02 14.09 37.81 2.74
131 132 6.130692 TCTCATTGTGGACATATGCCATAT 57.869 37.500 18.02 13.06 37.81 1.78
132 133 7.256494 TCTCATTGTGGACATATGCCATATA 57.744 36.000 18.02 9.70 37.81 0.86
133 134 7.105588 TCTCATTGTGGACATATGCCATATAC 58.894 38.462 18.02 8.88 37.81 1.47
134 135 5.874261 TCATTGTGGACATATGCCATATACG 59.126 40.000 18.02 9.61 37.81 3.06
135 136 3.595173 TGTGGACATATGCCATATACGC 58.405 45.455 18.02 8.07 37.81 4.42
136 137 2.936498 GTGGACATATGCCATATACGCC 59.064 50.000 18.02 0.53 37.81 5.68
137 138 2.569404 TGGACATATGCCATATACGCCA 59.431 45.455 12.98 3.04 0.00 5.69
138 139 2.936498 GGACATATGCCATATACGCCAC 59.064 50.000 1.58 0.00 0.00 5.01
139 140 3.595173 GACATATGCCATATACGCCACA 58.405 45.455 1.58 0.00 0.00 4.17
140 141 3.334691 ACATATGCCATATACGCCACAC 58.665 45.455 1.58 0.00 0.00 3.82
141 142 3.007940 ACATATGCCATATACGCCACACT 59.992 43.478 1.58 0.00 0.00 3.55
142 143 1.882912 ATGCCATATACGCCACACTG 58.117 50.000 0.00 0.00 0.00 3.66
143 144 0.539518 TGCCATATACGCCACACTGT 59.460 50.000 0.00 0.00 0.00 3.55
144 145 1.217882 GCCATATACGCCACACTGTC 58.782 55.000 0.00 0.00 0.00 3.51
145 146 1.472552 GCCATATACGCCACACTGTCA 60.473 52.381 0.00 0.00 0.00 3.58
146 147 2.806745 GCCATATACGCCACACTGTCAT 60.807 50.000 0.00 0.00 0.00 3.06
147 148 2.802247 CCATATACGCCACACTGTCATG 59.198 50.000 0.00 0.00 0.00 3.07
148 149 3.492482 CCATATACGCCACACTGTCATGA 60.492 47.826 0.00 0.00 0.00 3.07
149 150 2.299993 ATACGCCACACTGTCATGAG 57.700 50.000 0.00 0.00 0.00 2.90
150 151 0.389817 TACGCCACACTGTCATGAGC 60.390 55.000 0.00 0.00 0.00 4.26
151 152 1.668793 CGCCACACTGTCATGAGCA 60.669 57.895 0.00 0.00 0.00 4.26
152 153 1.871772 GCCACACTGTCATGAGCAC 59.128 57.895 0.00 0.00 0.00 4.40
153 154 0.886043 GCCACACTGTCATGAGCACA 60.886 55.000 0.00 0.00 0.00 4.57
154 155 1.817357 CCACACTGTCATGAGCACAT 58.183 50.000 0.00 0.00 37.19 3.21
161 162 3.417601 CATGAGCACATGGAGGCG 58.582 61.111 15.54 0.00 46.95 5.52
162 163 2.515523 ATGAGCACATGGAGGCGC 60.516 61.111 0.00 0.00 35.21 6.53
163 164 3.040206 ATGAGCACATGGAGGCGCT 62.040 57.895 7.64 0.00 37.44 5.92
164 165 2.894387 GAGCACATGGAGGCGCTC 60.894 66.667 7.64 2.45 43.60 5.03
165 166 4.827087 AGCACATGGAGGCGCTCG 62.827 66.667 7.64 0.00 34.54 5.03
167 168 2.887568 CACATGGAGGCGCTCGTC 60.888 66.667 7.64 1.41 0.00 4.20
168 169 4.148825 ACATGGAGGCGCTCGTCC 62.149 66.667 7.64 12.16 45.17 4.79
169 170 3.842923 CATGGAGGCGCTCGTCCT 61.843 66.667 15.85 4.36 45.18 3.85
178 179 4.057428 GCTCGTCCTCGCCACACT 62.057 66.667 0.00 0.00 36.96 3.55
179 180 2.126307 CTCGTCCTCGCCACACTG 60.126 66.667 0.00 0.00 36.96 3.66
180 181 3.633094 CTCGTCCTCGCCACACTGG 62.633 68.421 0.00 0.00 41.55 4.00
181 182 3.991051 CGTCCTCGCCACACTGGT 61.991 66.667 0.00 0.00 40.46 4.00
191 192 2.924185 CACACTGGTGGAGAAGCTG 58.076 57.895 5.70 0.00 41.45 4.24
192 193 1.072159 ACACTGGTGGAGAAGCTGC 59.928 57.895 5.70 0.00 34.19 5.25
193 194 1.071987 CACTGGTGGAGAAGCTGCA 59.928 57.895 1.02 0.00 0.00 4.41
194 195 0.535780 CACTGGTGGAGAAGCTGCAA 60.536 55.000 1.02 0.00 32.80 4.08
195 196 0.403271 ACTGGTGGAGAAGCTGCAAT 59.597 50.000 1.02 0.00 32.80 3.56
196 197 1.630369 ACTGGTGGAGAAGCTGCAATA 59.370 47.619 1.02 0.00 32.80 1.90
197 198 2.286872 CTGGTGGAGAAGCTGCAATAG 58.713 52.381 1.02 0.00 32.80 1.73
206 207 4.131376 CTGCAATAGCCAGTCCGG 57.869 61.111 0.00 0.00 41.13 5.14
207 208 1.221840 CTGCAATAGCCAGTCCGGT 59.778 57.895 0.00 0.00 41.13 5.28
208 209 0.811616 CTGCAATAGCCAGTCCGGTC 60.812 60.000 0.00 0.00 41.13 4.79
209 210 1.523938 GCAATAGCCAGTCCGGTCC 60.524 63.158 0.00 0.00 36.97 4.46
210 211 1.146263 CAATAGCCAGTCCGGTCCC 59.854 63.158 0.00 0.00 36.97 4.46
211 212 2.432300 AATAGCCAGTCCGGTCCCG 61.432 63.158 0.00 0.00 36.97 5.14
212 213 3.674050 ATAGCCAGTCCGGTCCCGT 62.674 63.158 0.00 0.00 37.81 5.28
215 216 3.760035 CCAGTCCGGTCCCGTCTG 61.760 72.222 16.07 16.07 38.32 3.51
216 217 2.989824 CAGTCCGGTCCCGTCTGT 60.990 66.667 0.00 0.00 36.02 3.41
217 218 2.989824 AGTCCGGTCCCGTCTGTG 60.990 66.667 0.00 0.00 37.81 3.66
218 219 3.300765 GTCCGGTCCCGTCTGTGT 61.301 66.667 0.00 0.00 37.81 3.72
219 220 2.522436 TCCGGTCCCGTCTGTGTT 60.522 61.111 0.00 0.00 37.81 3.32
220 221 2.357034 CCGGTCCCGTCTGTGTTG 60.357 66.667 4.84 0.00 37.81 3.33
221 222 2.732016 CGGTCCCGTCTGTGTTGA 59.268 61.111 0.00 0.00 34.35 3.18
222 223 1.663702 CGGTCCCGTCTGTGTTGAC 60.664 63.158 0.00 0.00 34.35 3.18
228 229 4.724022 GTCTGTGTTGACGACGGT 57.276 55.556 0.00 0.00 0.00 4.83
229 230 2.503256 GTCTGTGTTGACGACGGTC 58.497 57.895 0.00 0.00 43.71 4.79
230 231 0.030369 GTCTGTGTTGACGACGGTCT 59.970 55.000 6.57 0.00 43.79 3.85
231 232 0.742505 TCTGTGTTGACGACGGTCTT 59.257 50.000 6.57 0.00 43.79 3.01
232 233 1.948834 TCTGTGTTGACGACGGTCTTA 59.051 47.619 6.57 0.00 43.79 2.10
233 234 2.358582 TCTGTGTTGACGACGGTCTTAA 59.641 45.455 6.57 0.00 43.79 1.85
234 235 2.724690 CTGTGTTGACGACGGTCTTAAG 59.275 50.000 6.57 0.00 43.79 1.85
235 236 2.099592 TGTGTTGACGACGGTCTTAAGT 59.900 45.455 6.57 0.00 43.79 2.24
236 237 2.723143 GTGTTGACGACGGTCTTAAGTC 59.277 50.000 6.57 6.75 43.79 3.01
237 238 2.620115 TGTTGACGACGGTCTTAAGTCT 59.380 45.455 6.57 0.00 43.79 3.24
238 239 3.232771 GTTGACGACGGTCTTAAGTCTC 58.767 50.000 6.57 1.58 43.79 3.36
239 240 1.462283 TGACGACGGTCTTAAGTCTCG 59.538 52.381 6.57 6.15 43.79 4.04
240 241 0.801251 ACGACGGTCTTAAGTCTCGG 59.199 55.000 6.57 7.99 35.38 4.63
241 242 0.522915 CGACGGTCTTAAGTCTCGGC 60.523 60.000 6.57 6.52 35.38 5.54
242 243 0.524862 GACGGTCTTAAGTCTCGGCA 59.475 55.000 12.98 0.00 34.74 5.69
243 244 1.134560 GACGGTCTTAAGTCTCGGCAT 59.865 52.381 12.98 0.00 34.74 4.40
244 245 1.135083 ACGGTCTTAAGTCTCGGCATG 60.135 52.381 1.63 0.00 0.00 4.06
245 246 1.291132 GGTCTTAAGTCTCGGCATGC 58.709 55.000 9.90 9.90 0.00 4.06
246 247 1.405526 GGTCTTAAGTCTCGGCATGCA 60.406 52.381 21.36 0.00 0.00 3.96
247 248 1.661112 GTCTTAAGTCTCGGCATGCAC 59.339 52.381 21.36 9.02 0.00 4.57
248 249 1.009829 CTTAAGTCTCGGCATGCACC 58.990 55.000 21.36 1.35 0.00 5.01
249 250 0.323302 TTAAGTCTCGGCATGCACCA 59.677 50.000 21.36 0.72 0.00 4.17
250 251 0.541392 TAAGTCTCGGCATGCACCAT 59.459 50.000 21.36 3.73 0.00 3.55
251 252 1.028330 AAGTCTCGGCATGCACCATG 61.028 55.000 21.36 4.60 43.91 3.66
252 253 1.746615 GTCTCGGCATGCACCATGT 60.747 57.895 21.36 0.00 43.10 3.21
253 254 1.450134 TCTCGGCATGCACCATGTC 60.450 57.895 21.36 3.64 43.10 3.06
254 255 1.450848 CTCGGCATGCACCATGTCT 60.451 57.895 21.36 0.00 43.41 3.41
255 256 1.002257 TCGGCATGCACCATGTCTT 60.002 52.632 21.36 0.00 43.41 3.01
256 257 1.026182 TCGGCATGCACCATGTCTTC 61.026 55.000 21.36 0.00 43.41 2.87
257 258 1.028330 CGGCATGCACCATGTCTTCT 61.028 55.000 21.36 0.00 43.41 2.85
258 259 0.737219 GGCATGCACCATGTCTTCTC 59.263 55.000 21.36 0.00 42.45 2.87
259 260 0.737219 GCATGCACCATGTCTTCTCC 59.263 55.000 14.21 0.00 43.10 3.71
260 261 1.951895 GCATGCACCATGTCTTCTCCA 60.952 52.381 14.21 0.00 43.10 3.86
261 262 2.651455 CATGCACCATGTCTTCTCCAT 58.349 47.619 0.00 0.00 37.12 3.41
262 263 3.812262 CATGCACCATGTCTTCTCCATA 58.188 45.455 0.00 0.00 37.12 2.74
263 264 3.548745 TGCACCATGTCTTCTCCATAG 57.451 47.619 0.00 0.00 0.00 2.23
264 265 2.840038 TGCACCATGTCTTCTCCATAGT 59.160 45.455 0.00 0.00 0.00 2.12
265 266 4.030216 TGCACCATGTCTTCTCCATAGTA 58.970 43.478 0.00 0.00 0.00 1.82
266 267 4.141937 TGCACCATGTCTTCTCCATAGTAC 60.142 45.833 0.00 0.00 0.00 2.73
267 268 4.141937 GCACCATGTCTTCTCCATAGTACA 60.142 45.833 0.00 0.00 0.00 2.90
268 269 5.352284 CACCATGTCTTCTCCATAGTACAC 58.648 45.833 0.00 0.00 0.00 2.90
269 270 4.406003 ACCATGTCTTCTCCATAGTACACC 59.594 45.833 0.00 0.00 0.00 4.16
270 271 4.405680 CCATGTCTTCTCCATAGTACACCA 59.594 45.833 0.00 0.00 0.00 4.17
271 272 5.104941 CCATGTCTTCTCCATAGTACACCAA 60.105 44.000 0.00 0.00 0.00 3.67
272 273 6.406370 CATGTCTTCTCCATAGTACACCAAA 58.594 40.000 0.00 0.00 0.00 3.28
273 274 6.037786 TGTCTTCTCCATAGTACACCAAAG 57.962 41.667 0.00 0.00 0.00 2.77
274 275 4.870991 GTCTTCTCCATAGTACACCAAAGC 59.129 45.833 0.00 0.00 0.00 3.51
275 276 4.777896 TCTTCTCCATAGTACACCAAAGCT 59.222 41.667 0.00 0.00 0.00 3.74
276 277 4.737855 TCTCCATAGTACACCAAAGCTC 57.262 45.455 0.00 0.00 0.00 4.09
277 278 3.451178 TCTCCATAGTACACCAAAGCTCC 59.549 47.826 0.00 0.00 0.00 4.70
278 279 2.504175 TCCATAGTACACCAAAGCTCCC 59.496 50.000 0.00 0.00 0.00 4.30
279 280 2.550978 CATAGTACACCAAAGCTCCCG 58.449 52.381 0.00 0.00 0.00 5.14
280 281 0.899720 TAGTACACCAAAGCTCCCGG 59.100 55.000 0.00 0.00 0.00 5.73
281 282 1.376812 GTACACCAAAGCTCCCGGG 60.377 63.158 16.85 16.85 0.00 5.73
282 283 3.262448 TACACCAAAGCTCCCGGGC 62.262 63.158 18.49 4.74 0.00 6.13
283 284 4.659172 CACCAAAGCTCCCGGGCA 62.659 66.667 18.49 3.68 34.17 5.36
284 285 4.660938 ACCAAAGCTCCCGGGCAC 62.661 66.667 18.49 10.50 34.17 5.01
323 324 4.278956 GGAATGTGTCCTCGCGTT 57.721 55.556 5.77 0.00 43.98 4.84
324 325 2.079049 GGAATGTGTCCTCGCGTTC 58.921 57.895 5.77 0.00 43.98 3.95
325 326 2.079049 GAATGTGTCCTCGCGTTCC 58.921 57.895 5.77 0.00 41.49 3.62
326 327 0.669318 GAATGTGTCCTCGCGTTCCA 60.669 55.000 5.77 0.00 41.49 3.53
327 328 0.036388 AATGTGTCCTCGCGTTCCAT 60.036 50.000 5.77 0.00 0.00 3.41
328 329 0.460284 ATGTGTCCTCGCGTTCCATC 60.460 55.000 5.77 0.00 0.00 3.51
329 330 1.810030 GTGTCCTCGCGTTCCATCC 60.810 63.158 5.77 0.00 0.00 3.51
330 331 2.202892 GTCCTCGCGTTCCATCCC 60.203 66.667 5.77 0.00 0.00 3.85
331 332 2.682136 TCCTCGCGTTCCATCCCA 60.682 61.111 5.77 0.00 0.00 4.37
332 333 2.063979 TCCTCGCGTTCCATCCCAT 61.064 57.895 5.77 0.00 0.00 4.00
333 334 0.757561 TCCTCGCGTTCCATCCCATA 60.758 55.000 5.77 0.00 0.00 2.74
334 335 0.105964 CCTCGCGTTCCATCCCATAA 59.894 55.000 5.77 0.00 0.00 1.90
335 336 1.474320 CCTCGCGTTCCATCCCATAAA 60.474 52.381 5.77 0.00 0.00 1.40
336 337 2.494059 CTCGCGTTCCATCCCATAAAT 58.506 47.619 5.77 0.00 0.00 1.40
337 338 2.480419 CTCGCGTTCCATCCCATAAATC 59.520 50.000 5.77 0.00 0.00 2.17
338 339 1.194547 CGCGTTCCATCCCATAAATCG 59.805 52.381 0.00 0.00 0.00 3.34
339 340 2.218603 GCGTTCCATCCCATAAATCGT 58.781 47.619 0.00 0.00 0.00 3.73
340 341 3.395639 GCGTTCCATCCCATAAATCGTA 58.604 45.455 0.00 0.00 0.00 3.43
341 342 3.185797 GCGTTCCATCCCATAAATCGTAC 59.814 47.826 0.00 0.00 0.00 3.67
342 343 4.373527 CGTTCCATCCCATAAATCGTACA 58.626 43.478 0.00 0.00 0.00 2.90
343 344 4.447724 CGTTCCATCCCATAAATCGTACAG 59.552 45.833 0.00 0.00 0.00 2.74
344 345 5.607477 GTTCCATCCCATAAATCGTACAGA 58.393 41.667 0.00 0.00 0.00 3.41
345 346 6.231211 GTTCCATCCCATAAATCGTACAGAT 58.769 40.000 0.00 0.00 42.43 2.90
346 347 7.383687 GTTCCATCCCATAAATCGTACAGATA 58.616 38.462 0.00 0.00 38.98 1.98
347 348 7.733773 TCCATCCCATAAATCGTACAGATAT 57.266 36.000 0.00 0.00 38.98 1.63
348 349 7.782049 TCCATCCCATAAATCGTACAGATATC 58.218 38.462 0.00 0.00 38.98 1.63
349 350 7.398904 TCCATCCCATAAATCGTACAGATATCA 59.601 37.037 5.32 0.00 38.98 2.15
350 351 7.708322 CCATCCCATAAATCGTACAGATATCAG 59.292 40.741 5.32 0.00 38.98 2.90
351 352 7.776618 TCCCATAAATCGTACAGATATCAGT 57.223 36.000 5.32 5.69 38.98 3.41
352 353 8.190326 TCCCATAAATCGTACAGATATCAGTT 57.810 34.615 6.04 0.00 38.98 3.16
353 354 8.647796 TCCCATAAATCGTACAGATATCAGTTT 58.352 33.333 6.04 0.00 38.98 2.66
354 355 8.926710 CCCATAAATCGTACAGATATCAGTTTC 58.073 37.037 6.04 0.52 38.98 2.78
355 356 8.639428 CCATAAATCGTACAGATATCAGTTTCG 58.361 37.037 6.04 11.36 38.98 3.46
356 357 9.394477 CATAAATCGTACAGATATCAGTTTCGA 57.606 33.333 20.72 20.72 38.98 3.71
357 358 7.681125 AAATCGTACAGATATCAGTTTCGAC 57.319 36.000 20.80 8.70 38.98 4.20
358 359 6.621316 ATCGTACAGATATCAGTTTCGACT 57.379 37.500 20.80 12.66 37.93 4.18
359 360 7.725818 ATCGTACAGATATCAGTTTCGACTA 57.274 36.000 20.80 8.17 37.93 2.59
360 361 7.725818 TCGTACAGATATCAGTTTCGACTAT 57.274 36.000 17.28 0.00 0.00 2.12
361 362 8.151141 TCGTACAGATATCAGTTTCGACTATT 57.849 34.615 17.28 0.00 0.00 1.73
362 363 8.618677 TCGTACAGATATCAGTTTCGACTATTT 58.381 33.333 17.28 0.00 0.00 1.40
363 364 9.234384 CGTACAGATATCAGTTTCGACTATTTT 57.766 33.333 6.04 0.00 0.00 1.82
385 386 2.011540 GGCTCCAAAAGAGACCGTAG 57.988 55.000 0.00 0.00 46.08 3.51
386 387 1.549170 GGCTCCAAAAGAGACCGTAGA 59.451 52.381 0.00 0.00 46.08 2.59
387 388 2.608268 GCTCCAAAAGAGACCGTAGAC 58.392 52.381 0.00 0.00 46.50 2.59
388 389 2.674462 GCTCCAAAAGAGACCGTAGACC 60.674 54.545 0.00 0.00 46.50 3.85
389 390 1.542915 TCCAAAAGAGACCGTAGACCG 59.457 52.381 0.00 0.00 0.00 4.79
390 391 1.347320 CAAAAGAGACCGTAGACCGC 58.653 55.000 0.00 0.00 34.38 5.68
391 392 0.109412 AAAAGAGACCGTAGACCGCG 60.109 55.000 0.00 0.00 34.38 6.46
411 412 3.834610 CGGTCACACGTATCTTCTTCTT 58.165 45.455 0.00 0.00 0.00 2.52
412 413 3.608506 CGGTCACACGTATCTTCTTCTTG 59.391 47.826 0.00 0.00 0.00 3.02
413 414 4.615223 CGGTCACACGTATCTTCTTCTTGA 60.615 45.833 0.00 0.00 0.00 3.02
414 415 5.411781 GGTCACACGTATCTTCTTCTTGAT 58.588 41.667 0.00 0.00 0.00 2.57
417 421 7.009357 GGTCACACGTATCTTCTTCTTGATAAC 59.991 40.741 0.00 0.00 0.00 1.89
420 424 8.708742 CACACGTATCTTCTTCTTGATAACAAA 58.291 33.333 0.00 0.00 35.49 2.83
424 428 8.113062 CGTATCTTCTTCTTGATAACAAAGCAG 58.887 37.037 0.00 0.00 35.49 4.24
433 437 6.421501 TCTTGATAACAAAGCAGCATTGTTTG 59.578 34.615 28.42 16.45 45.97 2.93
440 444 3.825143 AGCAGCATTGTTTGTTCCTTT 57.175 38.095 0.00 0.00 0.00 3.11
441 445 4.141233 AGCAGCATTGTTTGTTCCTTTT 57.859 36.364 0.00 0.00 0.00 2.27
442 446 5.275067 AGCAGCATTGTTTGTTCCTTTTA 57.725 34.783 0.00 0.00 0.00 1.52
534 541 3.915437 ACACAAAGGCCGTAATTTCTG 57.085 42.857 0.00 0.00 0.00 3.02
580 593 9.504708 TTTTGTAGTTGTCCCTATTTTAATCGA 57.495 29.630 0.00 0.00 0.00 3.59
600 613 1.512996 CTTGGACAGCACAGCACAGG 61.513 60.000 0.00 0.00 0.00 4.00
608 621 1.303888 CACAGCACAGGGGAGCATT 60.304 57.895 0.00 0.00 32.55 3.56
610 623 1.303888 CAGCACAGGGGAGCATTGT 60.304 57.895 0.00 0.00 32.55 2.71
628 650 1.271163 TGTCTCCTTTACCCCTTTGCG 60.271 52.381 0.00 0.00 0.00 4.85
697 719 1.421410 GCAAGCGATACACCCTCGTG 61.421 60.000 0.00 0.00 46.11 4.35
719 741 6.128035 CGTGGGATGATGACTTGATTTTTACA 60.128 38.462 0.00 0.00 0.00 2.41
724 746 7.756722 GGATGATGACTTGATTTTTACAACTGG 59.243 37.037 0.00 0.00 0.00 4.00
725 747 7.815840 TGATGACTTGATTTTTACAACTGGA 57.184 32.000 0.00 0.00 0.00 3.86
726 748 7.648142 TGATGACTTGATTTTTACAACTGGAC 58.352 34.615 0.00 0.00 0.00 4.02
727 749 6.055231 TGACTTGATTTTTACAACTGGACG 57.945 37.500 0.00 0.00 0.00 4.79
734 756 3.955771 TTTACAACTGGACGAACAAGC 57.044 42.857 0.00 0.00 0.00 4.01
743 765 4.383602 CGAACAAGCGCCCAACGG 62.384 66.667 2.29 0.00 43.93 4.44
778 800 4.747810 ACAAAAACAGCAAAGAACAGAGG 58.252 39.130 0.00 0.00 0.00 3.69
782 804 4.639135 AACAGCAAAGAACAGAGGAAAC 57.361 40.909 0.00 0.00 0.00 2.78
785 807 4.462483 ACAGCAAAGAACAGAGGAAACAAA 59.538 37.500 0.00 0.00 0.00 2.83
786 808 5.039333 CAGCAAAGAACAGAGGAAACAAAG 58.961 41.667 0.00 0.00 0.00 2.77
787 809 4.949856 AGCAAAGAACAGAGGAAACAAAGA 59.050 37.500 0.00 0.00 0.00 2.52
788 810 5.418840 AGCAAAGAACAGAGGAAACAAAGAA 59.581 36.000 0.00 0.00 0.00 2.52
789 811 6.071391 AGCAAAGAACAGAGGAAACAAAGAAA 60.071 34.615 0.00 0.00 0.00 2.52
790 812 6.589907 GCAAAGAACAGAGGAAACAAAGAAAA 59.410 34.615 0.00 0.00 0.00 2.29
791 813 7.117667 GCAAAGAACAGAGGAAACAAAGAAAAA 59.882 33.333 0.00 0.00 0.00 1.94
956 1000 1.405821 CAGGGAAGTCTGGTAGTAGCG 59.594 57.143 0.00 0.00 0.00 4.26
957 1001 0.102663 GGGAAGTCTGGTAGTAGCGC 59.897 60.000 0.00 0.00 0.00 5.92
958 1002 1.104630 GGAAGTCTGGTAGTAGCGCT 58.895 55.000 17.26 17.26 0.00 5.92
959 1003 2.295885 GGAAGTCTGGTAGTAGCGCTA 58.704 52.381 14.45 14.45 0.00 4.26
1130 1184 3.834799 CGTACGTGCCCCCTCCTC 61.835 72.222 7.22 0.00 0.00 3.71
1175 1229 1.518572 CGGTTAATCGCTCACCGCT 60.519 57.895 0.00 0.00 46.45 5.52
1197 1251 3.575687 TGATCACTCATCACTGTGTCTGT 59.424 43.478 7.79 0.81 36.51 3.41
1199 1253 2.695147 TCACTCATCACTGTGTCTGTGT 59.305 45.455 7.79 10.40 35.37 3.72
1200 1254 2.798847 CACTCATCACTGTGTCTGTGTG 59.201 50.000 21.43 21.43 35.37 3.82
1201 1255 2.432146 ACTCATCACTGTGTCTGTGTGT 59.568 45.455 7.79 7.23 35.37 3.72
1202 1256 2.798847 CTCATCACTGTGTCTGTGTGTG 59.201 50.000 7.79 0.00 35.37 3.82
1203 1257 1.869132 CATCACTGTGTCTGTGTGTGG 59.131 52.381 7.79 0.00 35.37 4.17
1205 1259 0.462581 CACTGTGTCTGTGTGTGGCT 60.463 55.000 0.00 0.00 0.00 4.75
1206 1260 0.253044 ACTGTGTCTGTGTGTGGCTT 59.747 50.000 0.00 0.00 0.00 4.35
1207 1261 1.484653 ACTGTGTCTGTGTGTGGCTTA 59.515 47.619 0.00 0.00 0.00 3.09
1208 1262 1.867233 CTGTGTCTGTGTGTGGCTTAC 59.133 52.381 0.00 0.00 0.00 2.34
1209 1263 1.226746 GTGTCTGTGTGTGGCTTACC 58.773 55.000 0.00 0.00 0.00 2.85
1210 1264 0.107831 TGTCTGTGTGTGGCTTACCC 59.892 55.000 0.00 0.00 33.59 3.69
1211 1265 0.605589 GTCTGTGTGTGGCTTACCCC 60.606 60.000 0.00 0.00 33.59 4.95
1212 1266 1.671054 CTGTGTGTGGCTTACCCCG 60.671 63.158 0.00 0.00 33.59 5.73
1213 1267 2.359478 GTGTGTGGCTTACCCCGG 60.359 66.667 0.00 0.00 33.59 5.73
1214 1268 2.850130 TGTGTGGCTTACCCCGGT 60.850 61.111 0.00 0.00 33.59 5.28
1215 1269 2.046604 GTGTGGCTTACCCCGGTC 60.047 66.667 0.00 0.00 33.59 4.79
1216 1270 2.203877 TGTGGCTTACCCCGGTCT 60.204 61.111 0.00 0.00 33.59 3.85
1217 1271 1.844289 TGTGGCTTACCCCGGTCTT 60.844 57.895 0.00 0.00 33.59 3.01
1218 1272 1.376812 GTGGCTTACCCCGGTCTTG 60.377 63.158 0.00 0.00 33.59 3.02
1219 1273 2.437895 GGCTTACCCCGGTCTTGC 60.438 66.667 0.00 0.00 0.00 4.01
1220 1274 2.669240 GCTTACCCCGGTCTTGCT 59.331 61.111 0.00 0.00 0.00 3.91
1221 1275 1.002502 GCTTACCCCGGTCTTGCTT 60.003 57.895 0.00 0.00 0.00 3.91
1222 1276 0.608308 GCTTACCCCGGTCTTGCTTT 60.608 55.000 0.00 0.00 0.00 3.51
1225 1279 2.132089 TACCCCGGTCTTGCTTTGGG 62.132 60.000 0.00 0.00 39.69 4.12
1280 1334 1.377229 GACCCCGTGTTGGATTGGA 59.623 57.895 0.00 0.00 42.00 3.53
1287 1341 2.283298 CGTGTTGGATTGGAGGATCTG 58.717 52.381 0.00 0.00 33.73 2.90
1289 1343 3.690460 GTGTTGGATTGGAGGATCTGTT 58.310 45.455 0.00 0.00 33.73 3.16
1293 1347 3.184628 TGGATTGGAGGATCTGTTGTCT 58.815 45.455 0.00 0.00 33.73 3.41
1314 1368 0.103208 AGTGAGTGATCGATTCGGGC 59.897 55.000 6.18 0.00 0.00 6.13
1320 1374 4.301027 ATCGATTCGGGCCGCCTC 62.301 66.667 23.83 18.51 0.00 4.70
1332 1421 3.847602 CGCCTCCTCTCTGCTGGG 61.848 72.222 0.00 0.00 0.00 4.45
1339 1428 0.032615 CCTCTCTGCTGGGGACTAGT 60.033 60.000 0.00 0.00 0.00 2.57
1342 1431 2.173782 CTCTCTGCTGGGGACTAGTAGA 59.826 54.545 3.59 1.14 35.90 2.59
1344 1433 2.890311 CTCTGCTGGGGACTAGTAGATG 59.110 54.545 3.59 0.00 36.53 2.90
1370 1465 4.338012 TGTGTCCTCTCGACCTAAACATA 58.662 43.478 0.00 0.00 41.18 2.29
1373 1468 3.318557 GTCCTCTCGACCTAAACATAGGG 59.681 52.174 6.83 0.00 41.51 3.53
1374 1469 3.203710 TCCTCTCGACCTAAACATAGGGA 59.796 47.826 6.83 0.00 41.51 4.20
1375 1470 3.318557 CCTCTCGACCTAAACATAGGGAC 59.681 52.174 6.83 0.43 41.51 4.46
1386 1481 5.435686 AAACATAGGGACAGTAGATTGCA 57.564 39.130 0.00 0.00 0.00 4.08
1401 1496 5.988310 AGATTGCATGATTGGTCTGAAAA 57.012 34.783 0.00 0.00 0.00 2.29
1402 1497 5.717119 AGATTGCATGATTGGTCTGAAAAC 58.283 37.500 0.00 0.00 0.00 2.43
1422 1517 3.505386 ACCATGTGTTTTCTTATGGCCA 58.495 40.909 8.56 8.56 42.98 5.36
1426 1521 5.581874 CCATGTGTTTTCTTATGGCCAATTC 59.418 40.000 10.96 0.00 34.28 2.17
1428 1523 6.166984 TGTGTTTTCTTATGGCCAATTCAA 57.833 33.333 10.96 0.36 0.00 2.69
1432 1527 9.213799 GTGTTTTCTTATGGCCAATTCAATTTA 57.786 29.630 10.96 0.00 0.00 1.40
1433 1528 9.434420 TGTTTTCTTATGGCCAATTCAATTTAG 57.566 29.630 10.96 0.00 0.00 1.85
1438 1533 5.760484 ATGGCCAATTCAATTTAGTGGTT 57.240 34.783 10.96 0.00 0.00 3.67
1442 1537 6.438741 TGGCCAATTCAATTTAGTGGTTGATA 59.561 34.615 0.61 0.00 34.60 2.15
1443 1538 7.038729 TGGCCAATTCAATTTAGTGGTTGATAA 60.039 33.333 0.61 0.00 34.60 1.75
1444 1539 7.986889 GGCCAATTCAATTTAGTGGTTGATAAT 59.013 33.333 0.00 0.00 34.60 1.28
1455 1555 9.895138 TTTAGTGGTTGATAATAAGTTAGGTCC 57.105 33.333 0.00 0.00 0.00 4.46
1459 1559 5.465724 GGTTGATAATAAGTTAGGTCCTGCG 59.534 44.000 0.00 0.00 0.00 5.18
1470 1570 1.079543 GTCCTGCGAGCTGTGATGT 60.080 57.895 0.00 0.00 0.00 3.06
1485 1585 1.889170 TGATGTCACGAGAGAGCTGTT 59.111 47.619 0.00 0.00 0.00 3.16
1487 1587 1.318576 TGTCACGAGAGAGCTGTTGA 58.681 50.000 0.00 0.00 0.00 3.18
1489 1589 2.257894 GTCACGAGAGAGCTGTTGATG 58.742 52.381 0.00 0.00 0.00 3.07
1490 1590 0.997932 CACGAGAGAGCTGTTGATGC 59.002 55.000 0.00 0.00 0.00 3.91
1491 1591 0.108424 ACGAGAGAGCTGTTGATGCC 60.108 55.000 0.00 0.00 0.00 4.40
1492 1592 1.144565 CGAGAGAGCTGTTGATGCCG 61.145 60.000 0.00 0.00 0.00 5.69
1493 1593 0.108424 GAGAGAGCTGTTGATGCCGT 60.108 55.000 0.00 0.00 0.00 5.68
1501 1601 2.872245 GCTGTTGATGCCGTATGTATGT 59.128 45.455 0.00 0.00 0.00 2.29
1505 1605 2.209273 TGATGCCGTATGTATGTGTGC 58.791 47.619 0.00 0.00 0.00 4.57
1508 1608 1.164041 GCCGTATGTATGTGTGCCCC 61.164 60.000 0.00 0.00 0.00 5.80
1509 1609 0.179234 CCGTATGTATGTGTGCCCCA 59.821 55.000 0.00 0.00 0.00 4.96
1512 1612 2.948979 CGTATGTATGTGTGCCCCATTT 59.051 45.455 0.00 0.00 0.00 2.32
1513 1613 3.243035 CGTATGTATGTGTGCCCCATTTG 60.243 47.826 0.00 0.00 0.00 2.32
1514 1614 2.300956 TGTATGTGTGCCCCATTTGT 57.699 45.000 0.00 0.00 0.00 2.83
1515 1615 2.166829 TGTATGTGTGCCCCATTTGTC 58.833 47.619 0.00 0.00 0.00 3.18
1516 1616 1.476488 GTATGTGTGCCCCATTTGTCC 59.524 52.381 0.00 0.00 0.00 4.02
1517 1617 0.114954 ATGTGTGCCCCATTTGTCCT 59.885 50.000 0.00 0.00 0.00 3.85
1518 1618 0.827089 TGTGTGCCCCATTTGTCCTG 60.827 55.000 0.00 0.00 0.00 3.86
1519 1619 0.827507 GTGTGCCCCATTTGTCCTGT 60.828 55.000 0.00 0.00 0.00 4.00
1538 1738 5.468746 TCCTGTTTAGAATCTGGTTTTGACG 59.531 40.000 0.00 0.00 0.00 4.35
1539 1739 5.103290 TGTTTAGAATCTGGTTTTGACGC 57.897 39.130 0.00 0.00 0.00 5.19
1540 1740 4.023536 TGTTTAGAATCTGGTTTTGACGCC 60.024 41.667 0.00 0.00 0.00 5.68
1542 1742 0.872388 GAATCTGGTTTTGACGCCGT 59.128 50.000 0.00 0.00 0.00 5.68
1543 1743 0.591170 AATCTGGTTTTGACGCCGTG 59.409 50.000 0.00 0.00 0.00 4.94
1546 1746 2.251371 GGTTTTGACGCCGTGAGC 59.749 61.111 0.00 0.00 38.52 4.26
1551 1751 1.573829 TTTGACGCCGTGAGCATTCC 61.574 55.000 0.00 0.00 44.04 3.01
1552 1752 2.434185 GACGCCGTGAGCATTCCA 60.434 61.111 0.00 0.00 44.04 3.53
1555 1755 2.324330 CGCCGTGAGCATTCCAACA 61.324 57.895 0.00 0.00 44.04 3.33
1556 1756 1.503542 GCCGTGAGCATTCCAACAG 59.496 57.895 0.00 0.00 42.97 3.16
1563 1763 3.382546 GTGAGCATTCCAACAGGCATATT 59.617 43.478 0.00 0.00 0.00 1.28
1571 1771 4.231273 TCCAACAGGCATATTAGGCTAGA 58.769 43.478 0.00 0.00 43.24 2.43
1573 1773 6.022958 TCCAACAGGCATATTAGGCTAGATA 58.977 40.000 0.00 0.00 43.24 1.98
1577 1777 7.358770 ACAGGCATATTAGGCTAGATATGAG 57.641 40.000 24.85 19.02 43.24 2.90
1581 1781 6.928492 GGCATATTAGGCTAGATATGAGCTTC 59.072 42.308 24.85 14.62 38.09 3.86
1583 1783 7.652909 GCATATTAGGCTAGATATGAGCTTCAG 59.347 40.741 24.85 9.32 38.09 3.02
1586 1786 5.885449 AGGCTAGATATGAGCTTCAGTTT 57.115 39.130 0.00 0.00 39.98 2.66
1588 1788 5.365025 AGGCTAGATATGAGCTTCAGTTTGA 59.635 40.000 0.00 0.00 39.98 2.69
1589 1789 6.043012 AGGCTAGATATGAGCTTCAGTTTGAT 59.957 38.462 0.00 0.00 39.98 2.57
1590 1790 6.147492 GGCTAGATATGAGCTTCAGTTTGATG 59.853 42.308 0.00 0.00 39.98 3.07
1605 1805 5.242393 CAGTTTGATGCTTGGATATTAGGGG 59.758 44.000 0.00 0.00 0.00 4.79
1610 1810 6.032039 TGATGCTTGGATATTAGGGGTATCT 58.968 40.000 0.00 0.00 0.00 1.98
1617 1817 9.439461 CTTGGATATTAGGGGTATCTGATGATA 57.561 37.037 0.00 0.00 34.32 2.15
1619 1819 8.578376 TGGATATTAGGGGTATCTGATGATAGT 58.422 37.037 0.00 0.00 36.00 2.12
1651 1851 9.734620 TTATCTTGTTTGAAGTCTGTTTTGATG 57.265 29.630 0.00 0.00 0.00 3.07
1652 1852 6.035843 TCTTGTTTGAAGTCTGTTTTGATGC 58.964 36.000 0.00 0.00 0.00 3.91
1653 1853 4.681744 TGTTTGAAGTCTGTTTTGATGCC 58.318 39.130 0.00 0.00 0.00 4.40
1654 1854 4.051237 GTTTGAAGTCTGTTTTGATGCCC 58.949 43.478 0.00 0.00 0.00 5.36
1655 1855 3.228188 TGAAGTCTGTTTTGATGCCCT 57.772 42.857 0.00 0.00 0.00 5.19
1656 1856 3.149196 TGAAGTCTGTTTTGATGCCCTC 58.851 45.455 0.00 0.00 0.00 4.30
1657 1857 1.813513 AGTCTGTTTTGATGCCCTCG 58.186 50.000 0.00 0.00 0.00 4.63
1658 1858 0.169009 GTCTGTTTTGATGCCCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
1686 1886 3.996150 AAAAGTCTGTTGATGGTGCAG 57.004 42.857 0.00 0.00 0.00 4.41
1694 1894 1.270550 GTTGATGGTGCAGTTTCTGGG 59.729 52.381 0.00 0.00 31.21 4.45
1695 1895 0.251297 TGATGGTGCAGTTTCTGGGG 60.251 55.000 0.00 0.00 31.21 4.96
1712 1916 0.890683 GGGGGTTCAGTTTCAGCATG 59.109 55.000 0.00 0.00 37.54 4.06
1742 1946 1.696336 AGTCATCACCTGCACTCTTGT 59.304 47.619 0.00 0.00 0.00 3.16
1743 1947 2.899900 AGTCATCACCTGCACTCTTGTA 59.100 45.455 0.00 0.00 0.00 2.41
1744 1948 3.056250 AGTCATCACCTGCACTCTTGTAG 60.056 47.826 0.00 0.00 35.32 2.74
1745 1949 2.899900 TCATCACCTGCACTCTTGTAGT 59.100 45.455 0.00 0.00 39.81 2.73
1746 1950 3.056536 TCATCACCTGCACTCTTGTAGTC 60.057 47.826 0.00 0.00 35.76 2.59
1747 1951 2.598565 TCACCTGCACTCTTGTAGTCT 58.401 47.619 0.00 0.00 35.76 3.24
1748 1952 2.965831 TCACCTGCACTCTTGTAGTCTT 59.034 45.455 0.00 0.00 35.76 3.01
1759 1963 8.277018 GCACTCTTGTAGTCTTTCTTACTTTTC 58.723 37.037 0.00 0.00 35.76 2.29
1776 1983 6.771188 ACTTTTCGTGTTGTTAGATCTCTG 57.229 37.500 0.00 0.00 0.00 3.35
1814 2021 3.189080 CGATTGTTTGATGGCAGAGAACA 59.811 43.478 7.87 7.87 0.00 3.18
1934 2141 2.395619 CCACTTATACCGGTCCTTCCT 58.604 52.381 12.40 0.00 0.00 3.36
1944 2151 1.607628 CGGTCCTTCCTACGAGTATGG 59.392 57.143 0.00 0.00 0.00 2.74
1967 2174 5.363939 GCACTTATCTGTTTATCCTCTGCT 58.636 41.667 0.00 0.00 0.00 4.24
1973 2180 3.840666 TCTGTTTATCCTCTGCTGGTTCT 59.159 43.478 0.00 0.00 0.00 3.01
1989 2196 7.479980 TGCTGGTTCTAATGTTAATGTTATGC 58.520 34.615 0.00 0.00 0.00 3.14
1992 2199 7.995289 TGGTTCTAATGTTAATGTTATGCCAG 58.005 34.615 0.00 0.00 0.00 4.85
2015 2222 3.549794 AGGATGCTGGCTTATTTGACTC 58.450 45.455 0.00 0.00 0.00 3.36
2032 2239 8.641498 ATTTGACTCAATATCCTCTTGTTTGT 57.359 30.769 0.00 0.00 0.00 2.83
2033 2240 8.463930 TTTGACTCAATATCCTCTTGTTTGTT 57.536 30.769 0.00 0.00 0.00 2.83
2034 2241 8.463930 TTGACTCAATATCCTCTTGTTTGTTT 57.536 30.769 0.00 0.00 0.00 2.83
2035 2242 7.874940 TGACTCAATATCCTCTTGTTTGTTTG 58.125 34.615 0.00 0.00 0.00 2.93
2036 2243 7.502226 TGACTCAATATCCTCTTGTTTGTTTGT 59.498 33.333 0.00 0.00 0.00 2.83
2037 2244 8.237811 ACTCAATATCCTCTTGTTTGTTTGTT 57.762 30.769 0.00 0.00 0.00 2.83
2038 2245 8.695456 ACTCAATATCCTCTTGTTTGTTTGTTT 58.305 29.630 0.00 0.00 0.00 2.83
2039 2246 8.870160 TCAATATCCTCTTGTTTGTTTGTTTG 57.130 30.769 0.00 0.00 0.00 2.93
2120 2335 3.672808 AGCTGTGAAGATGTCTTTGGAG 58.327 45.455 0.00 0.00 36.11 3.86
2126 2341 4.214332 GTGAAGATGTCTTTGGAGGTTCAC 59.786 45.833 0.00 0.00 36.75 3.18
2159 2374 3.410508 TGACATTGTGATTGCAGCACTA 58.589 40.909 18.66 13.49 37.18 2.74
2325 2540 1.827789 GGACTGCTTGGTGCCACAA 60.828 57.895 0.00 0.00 42.00 3.33
2345 2560 1.637553 ACCATCAACTTCTCTGGCCAT 59.362 47.619 5.51 0.00 31.72 4.40
2444 2659 4.631773 CCTGCTGGGATGACTGTG 57.368 61.111 0.71 0.00 37.23 3.66
2486 2701 3.507233 TGATCAATTTGAAGACACCTGCC 59.493 43.478 2.68 0.00 0.00 4.85
2489 2704 2.361757 CAATTTGAAGACACCTGCCACA 59.638 45.455 0.00 0.00 0.00 4.17
2663 2878 3.102985 CGGAACCAACGCAACACA 58.897 55.556 0.00 0.00 0.00 3.72
2801 3016 1.246737 GCAAGGAAGGGAAGCACAGG 61.247 60.000 0.00 0.00 0.00 4.00
2859 3074 3.537206 AAGGTGGTCTGCGACAGCC 62.537 63.158 10.14 10.28 44.33 4.85
2864 3079 4.008933 GTCTGCGACAGCCTGGGT 62.009 66.667 0.00 0.00 44.33 4.51
2966 3181 2.024941 GGAAGGGGTGAAAGTGATGGAT 60.025 50.000 0.00 0.00 0.00 3.41
2984 3199 4.242336 GGATGATGTCCTTCCCTTCTTT 57.758 45.455 0.00 0.00 44.16 2.52
3055 3270 1.679944 GGAGCTAGCTGGCATTGTGAA 60.680 52.381 24.99 0.00 34.17 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.343231 ACACCCAAATGCAGATATGTTGA 58.657 39.130 0.00 0.00 0.00 3.18
1 2 4.724074 ACACCCAAATGCAGATATGTTG 57.276 40.909 0.00 0.00 0.00 3.33
4 5 4.675510 GTCAACACCCAAATGCAGATATG 58.324 43.478 0.00 0.00 0.00 1.78
5 6 3.378112 CGTCAACACCCAAATGCAGATAT 59.622 43.478 0.00 0.00 0.00 1.63
6 7 2.746904 CGTCAACACCCAAATGCAGATA 59.253 45.455 0.00 0.00 0.00 1.98
7 8 1.541147 CGTCAACACCCAAATGCAGAT 59.459 47.619 0.00 0.00 0.00 2.90
8 9 0.950836 CGTCAACACCCAAATGCAGA 59.049 50.000 0.00 0.00 0.00 4.26
9 10 0.950836 TCGTCAACACCCAAATGCAG 59.049 50.000 0.00 0.00 0.00 4.41
10 11 1.393603 TTCGTCAACACCCAAATGCA 58.606 45.000 0.00 0.00 0.00 3.96
11 12 2.327568 CATTCGTCAACACCCAAATGC 58.672 47.619 0.00 0.00 0.00 3.56
12 13 2.288091 TGCATTCGTCAACACCCAAATG 60.288 45.455 0.00 0.00 0.00 2.32
13 14 1.959985 TGCATTCGTCAACACCCAAAT 59.040 42.857 0.00 0.00 0.00 2.32
14 15 1.066303 GTGCATTCGTCAACACCCAAA 59.934 47.619 0.00 0.00 0.00 3.28
15 16 0.665835 GTGCATTCGTCAACACCCAA 59.334 50.000 0.00 0.00 0.00 4.12
16 17 0.464554 TGTGCATTCGTCAACACCCA 60.465 50.000 0.00 0.00 31.98 4.51
17 18 0.881118 ATGTGCATTCGTCAACACCC 59.119 50.000 0.00 0.00 31.98 4.61
18 19 1.535028 TCATGTGCATTCGTCAACACC 59.465 47.619 0.00 0.00 31.98 4.16
19 20 2.224079 ACTCATGTGCATTCGTCAACAC 59.776 45.455 0.00 0.00 0.00 3.32
20 21 2.223845 CACTCATGTGCATTCGTCAACA 59.776 45.455 0.00 0.00 37.38 3.33
21 22 2.480037 TCACTCATGTGCATTCGTCAAC 59.520 45.455 0.00 0.00 43.49 3.18
22 23 2.480037 GTCACTCATGTGCATTCGTCAA 59.520 45.455 0.00 0.00 43.49 3.18
23 24 2.068519 GTCACTCATGTGCATTCGTCA 58.931 47.619 0.00 0.00 43.49 4.35
24 25 2.341257 AGTCACTCATGTGCATTCGTC 58.659 47.619 0.00 0.00 43.49 4.20
25 26 2.289010 TGAGTCACTCATGTGCATTCGT 60.289 45.455 2.36 0.00 43.49 3.85
26 27 2.340337 TGAGTCACTCATGTGCATTCG 58.660 47.619 2.36 0.00 43.49 3.34
27 28 4.959596 ATTGAGTCACTCATGTGCATTC 57.040 40.909 8.74 0.00 40.39 2.67
28 29 7.772292 AGTTATATTGAGTCACTCATGTGCATT 59.228 33.333 8.74 0.00 40.39 3.56
29 30 7.278135 AGTTATATTGAGTCACTCATGTGCAT 58.722 34.615 8.74 0.93 40.39 3.96
30 31 6.643388 AGTTATATTGAGTCACTCATGTGCA 58.357 36.000 8.74 0.00 40.39 4.57
31 32 6.074623 CGAGTTATATTGAGTCACTCATGTGC 60.075 42.308 8.74 0.00 40.39 4.57
32 33 7.196331 TCGAGTTATATTGAGTCACTCATGTG 58.804 38.462 8.74 0.00 40.39 3.21
33 34 7.334844 TCGAGTTATATTGAGTCACTCATGT 57.665 36.000 8.74 3.34 40.39 3.21
34 35 8.634475 TTTCGAGTTATATTGAGTCACTCATG 57.366 34.615 8.74 0.00 40.39 3.07
35 36 7.923344 CCTTTCGAGTTATATTGAGTCACTCAT 59.077 37.037 8.74 1.70 40.39 2.90
36 37 7.122204 TCCTTTCGAGTTATATTGAGTCACTCA 59.878 37.037 2.36 2.36 38.87 3.41
37 38 7.481642 TCCTTTCGAGTTATATTGAGTCACTC 58.518 38.462 0.00 0.00 0.00 3.51
38 39 7.406031 TCCTTTCGAGTTATATTGAGTCACT 57.594 36.000 0.00 0.00 0.00 3.41
39 40 7.254151 GCTTCCTTTCGAGTTATATTGAGTCAC 60.254 40.741 0.00 0.00 0.00 3.67
40 41 6.757010 GCTTCCTTTCGAGTTATATTGAGTCA 59.243 38.462 0.00 0.00 0.00 3.41
41 42 6.074782 CGCTTCCTTTCGAGTTATATTGAGTC 60.075 42.308 0.00 0.00 0.00 3.36
42 43 5.749109 CGCTTCCTTTCGAGTTATATTGAGT 59.251 40.000 0.00 0.00 0.00 3.41
43 44 5.977725 TCGCTTCCTTTCGAGTTATATTGAG 59.022 40.000 0.00 0.00 0.00 3.02
44 45 5.747197 GTCGCTTCCTTTCGAGTTATATTGA 59.253 40.000 0.00 0.00 35.21 2.57
45 46 5.518847 TGTCGCTTCCTTTCGAGTTATATTG 59.481 40.000 0.00 0.00 35.21 1.90
46 47 5.657474 TGTCGCTTCCTTTCGAGTTATATT 58.343 37.500 0.00 0.00 35.21 1.28
47 48 5.258456 TGTCGCTTCCTTTCGAGTTATAT 57.742 39.130 0.00 0.00 35.21 0.86
48 49 4.707030 TGTCGCTTCCTTTCGAGTTATA 57.293 40.909 0.00 0.00 35.21 0.98
49 50 3.587797 TGTCGCTTCCTTTCGAGTTAT 57.412 42.857 0.00 0.00 35.21 1.89
50 51 3.005050 TCTTGTCGCTTCCTTTCGAGTTA 59.995 43.478 0.00 0.00 35.21 2.24
51 52 2.135933 CTTGTCGCTTCCTTTCGAGTT 58.864 47.619 0.00 0.00 35.21 3.01
52 53 1.340248 TCTTGTCGCTTCCTTTCGAGT 59.660 47.619 0.00 0.00 35.21 4.18
53 54 1.989165 CTCTTGTCGCTTCCTTTCGAG 59.011 52.381 0.00 0.00 35.21 4.04
54 55 1.336887 CCTCTTGTCGCTTCCTTTCGA 60.337 52.381 0.00 0.00 0.00 3.71
55 56 1.071605 CCTCTTGTCGCTTCCTTTCG 58.928 55.000 0.00 0.00 0.00 3.46
56 57 0.799393 GCCTCTTGTCGCTTCCTTTC 59.201 55.000 0.00 0.00 0.00 2.62
57 58 0.398318 AGCCTCTTGTCGCTTCCTTT 59.602 50.000 0.00 0.00 28.56 3.11
58 59 0.398318 AAGCCTCTTGTCGCTTCCTT 59.602 50.000 0.00 0.00 41.42 3.36
59 60 2.062070 AAGCCTCTTGTCGCTTCCT 58.938 52.632 0.00 0.00 41.42 3.36
60 61 4.703703 AAGCCTCTTGTCGCTTCC 57.296 55.556 0.00 0.00 41.42 3.46
63 64 0.394565 AGTTGAAGCCTCTTGTCGCT 59.605 50.000 0.00 0.00 36.74 4.93
64 65 0.514691 CAGTTGAAGCCTCTTGTCGC 59.485 55.000 0.00 0.00 0.00 5.19
65 66 1.151668 CCAGTTGAAGCCTCTTGTCG 58.848 55.000 0.00 0.00 0.00 4.35
66 67 2.421619 CTCCAGTTGAAGCCTCTTGTC 58.578 52.381 0.00 0.00 0.00 3.18
67 68 1.072965 CCTCCAGTTGAAGCCTCTTGT 59.927 52.381 0.00 0.00 0.00 3.16
68 69 1.818642 CCTCCAGTTGAAGCCTCTTG 58.181 55.000 0.00 0.00 0.00 3.02
69 70 0.037447 GCCTCCAGTTGAAGCCTCTT 59.963 55.000 0.00 0.00 0.00 2.85
70 71 1.682257 GCCTCCAGTTGAAGCCTCT 59.318 57.895 0.00 0.00 0.00 3.69
71 72 1.743252 CGCCTCCAGTTGAAGCCTC 60.743 63.158 0.00 0.00 0.00 4.70
72 73 2.348998 CGCCTCCAGTTGAAGCCT 59.651 61.111 0.00 0.00 0.00 4.58
73 74 3.435186 GCGCCTCCAGTTGAAGCC 61.435 66.667 0.00 0.00 0.00 4.35
74 75 3.435186 GGCGCCTCCAGTTGAAGC 61.435 66.667 22.15 0.00 34.01 3.86
75 76 3.121030 CGGCGCCTCCAGTTGAAG 61.121 66.667 26.68 0.00 34.01 3.02
76 77 3.621805 TCGGCGCCTCCAGTTGAA 61.622 61.111 26.68 0.00 34.01 2.69
77 78 4.373116 GTCGGCGCCTCCAGTTGA 62.373 66.667 26.68 9.61 34.01 3.18
78 79 3.883744 AAGTCGGCGCCTCCAGTTG 62.884 63.158 26.68 6.92 34.01 3.16
79 80 3.591254 GAAGTCGGCGCCTCCAGTT 62.591 63.158 26.68 16.63 34.01 3.16
80 81 4.070552 GAAGTCGGCGCCTCCAGT 62.071 66.667 26.68 8.21 34.01 4.00
81 82 3.764466 AGAAGTCGGCGCCTCCAG 61.764 66.667 26.68 9.07 34.01 3.86
82 83 4.069232 CAGAAGTCGGCGCCTCCA 62.069 66.667 26.68 4.99 34.01 3.86
83 84 4.821589 CCAGAAGTCGGCGCCTCC 62.822 72.222 26.68 14.74 0.00 4.30
84 85 4.070552 ACCAGAAGTCGGCGCCTC 62.071 66.667 26.68 15.51 0.00 4.70
85 86 4.379243 CACCAGAAGTCGGCGCCT 62.379 66.667 26.68 4.89 0.00 5.52
86 87 4.681978 ACACCAGAAGTCGGCGCC 62.682 66.667 19.07 19.07 0.00 6.53
87 88 2.758770 TACACACCAGAAGTCGGCGC 62.759 60.000 0.00 0.00 0.00 6.53
88 89 0.319211 TTACACACCAGAAGTCGGCG 60.319 55.000 0.00 0.00 0.00 6.46
89 90 2.000447 GATTACACACCAGAAGTCGGC 59.000 52.381 0.00 0.00 0.00 5.54
90 91 3.056821 TGAGATTACACACCAGAAGTCGG 60.057 47.826 0.00 0.00 0.00 4.79
91 92 4.174411 TGAGATTACACACCAGAAGTCG 57.826 45.455 0.00 0.00 0.00 4.18
92 93 5.934625 ACAATGAGATTACACACCAGAAGTC 59.065 40.000 0.00 0.00 0.00 3.01
93 94 5.702670 CACAATGAGATTACACACCAGAAGT 59.297 40.000 0.00 0.00 0.00 3.01
94 95 5.122869 CCACAATGAGATTACACACCAGAAG 59.877 44.000 0.00 0.00 0.00 2.85
95 96 5.003160 CCACAATGAGATTACACACCAGAA 58.997 41.667 0.00 0.00 0.00 3.02
96 97 4.285775 TCCACAATGAGATTACACACCAGA 59.714 41.667 0.00 0.00 0.00 3.86
97 98 4.393062 GTCCACAATGAGATTACACACCAG 59.607 45.833 0.00 0.00 0.00 4.00
98 99 4.202409 TGTCCACAATGAGATTACACACCA 60.202 41.667 0.00 0.00 0.00 4.17
99 100 4.323417 TGTCCACAATGAGATTACACACC 58.677 43.478 0.00 0.00 0.00 4.16
100 101 7.633621 CATATGTCCACAATGAGATTACACAC 58.366 38.462 0.00 0.00 0.00 3.82
101 102 6.260714 GCATATGTCCACAATGAGATTACACA 59.739 38.462 4.29 0.00 0.00 3.72
102 103 6.293626 GGCATATGTCCACAATGAGATTACAC 60.294 42.308 4.29 0.00 0.00 2.90
103 104 5.764686 GGCATATGTCCACAATGAGATTACA 59.235 40.000 4.29 0.00 0.00 2.41
104 105 5.764686 TGGCATATGTCCACAATGAGATTAC 59.235 40.000 12.98 0.00 0.00 1.89
105 106 5.939447 TGGCATATGTCCACAATGAGATTA 58.061 37.500 12.98 0.00 0.00 1.75
106 107 4.795469 TGGCATATGTCCACAATGAGATT 58.205 39.130 12.98 0.00 0.00 2.40
107 108 4.442401 TGGCATATGTCCACAATGAGAT 57.558 40.909 12.98 0.00 0.00 2.75
108 109 3.929955 TGGCATATGTCCACAATGAGA 57.070 42.857 12.98 0.00 0.00 3.27
109 110 6.036408 CGTATATGGCATATGTCCACAATGAG 59.964 42.308 26.37 3.67 36.26 2.90
110 111 5.874261 CGTATATGGCATATGTCCACAATGA 59.126 40.000 26.37 3.07 36.26 2.57
111 112 5.447683 GCGTATATGGCATATGTCCACAATG 60.448 44.000 26.37 12.94 36.26 2.82
112 113 4.635765 GCGTATATGGCATATGTCCACAAT 59.364 41.667 26.37 15.83 36.26 2.71
113 114 4.000325 GCGTATATGGCATATGTCCACAA 59.000 43.478 26.37 5.15 36.26 3.33
114 115 3.595173 GCGTATATGGCATATGTCCACA 58.405 45.455 26.37 9.60 36.26 4.17
115 116 2.936498 GGCGTATATGGCATATGTCCAC 59.064 50.000 26.37 16.55 36.26 4.02
116 117 2.569404 TGGCGTATATGGCATATGTCCA 59.431 45.455 26.37 23.94 39.79 4.02
117 118 2.936498 GTGGCGTATATGGCATATGTCC 59.064 50.000 26.37 22.15 46.76 4.02
118 119 3.370978 GTGTGGCGTATATGGCATATGTC 59.629 47.826 26.37 18.17 46.76 3.06
119 120 3.007940 AGTGTGGCGTATATGGCATATGT 59.992 43.478 26.37 10.08 46.76 2.29
120 121 3.371898 CAGTGTGGCGTATATGGCATATG 59.628 47.826 26.37 16.88 46.76 1.78
121 122 3.007940 ACAGTGTGGCGTATATGGCATAT 59.992 43.478 22.55 22.58 46.76 1.78
122 123 2.367241 ACAGTGTGGCGTATATGGCATA 59.633 45.455 22.55 17.76 46.76 3.14
123 124 1.140852 ACAGTGTGGCGTATATGGCAT 59.859 47.619 22.55 4.88 46.76 4.40
124 125 0.539518 ACAGTGTGGCGTATATGGCA 59.460 50.000 16.69 16.69 42.76 4.92
125 126 1.217882 GACAGTGTGGCGTATATGGC 58.782 55.000 11.47 11.47 0.00 4.40
126 127 2.595124 TGACAGTGTGGCGTATATGG 57.405 50.000 0.00 0.00 0.00 2.74
127 128 3.716601 TCATGACAGTGTGGCGTATATG 58.283 45.455 0.00 0.00 0.00 1.78
128 129 3.800261 GCTCATGACAGTGTGGCGTATAT 60.800 47.826 0.00 0.00 0.00 0.86
129 130 2.481276 GCTCATGACAGTGTGGCGTATA 60.481 50.000 0.00 0.00 0.00 1.47
130 131 1.740380 GCTCATGACAGTGTGGCGTAT 60.740 52.381 0.00 0.00 0.00 3.06
131 132 0.389817 GCTCATGACAGTGTGGCGTA 60.390 55.000 0.00 0.00 0.00 4.42
132 133 1.669115 GCTCATGACAGTGTGGCGT 60.669 57.895 0.00 0.00 0.00 5.68
133 134 1.668793 TGCTCATGACAGTGTGGCG 60.669 57.895 0.00 0.00 0.00 5.69
134 135 0.886043 TGTGCTCATGACAGTGTGGC 60.886 55.000 0.00 0.00 0.00 5.01
135 136 1.817357 ATGTGCTCATGACAGTGTGG 58.183 50.000 0.00 0.00 32.51 4.17
145 146 2.515523 GCGCCTCCATGTGCTCAT 60.516 61.111 0.00 0.00 38.69 2.90
150 151 2.887568 GACGAGCGCCTCCATGTG 60.888 66.667 2.29 0.00 0.00 3.21
151 152 4.148825 GGACGAGCGCCTCCATGT 62.149 66.667 2.29 0.00 0.00 3.21
152 153 3.781770 GAGGACGAGCGCCTCCATG 62.782 68.421 16.43 0.00 44.96 3.66
153 154 3.532155 GAGGACGAGCGCCTCCAT 61.532 66.667 16.43 4.26 44.96 3.41
161 162 4.057428 AGTGTGGCGAGGACGAGC 62.057 66.667 0.00 0.00 42.66 5.03
162 163 2.126307 CAGTGTGGCGAGGACGAG 60.126 66.667 0.00 0.00 42.66 4.18
163 164 3.680786 CCAGTGTGGCGAGGACGA 61.681 66.667 0.00 0.00 42.66 4.20
164 165 3.991051 ACCAGTGTGGCGAGGACG 61.991 66.667 0.00 0.00 42.67 4.79
165 166 2.357517 CACCAGTGTGGCGAGGAC 60.358 66.667 0.00 0.00 42.67 3.85
173 174 1.233285 GCAGCTTCTCCACCAGTGTG 61.233 60.000 0.00 0.00 42.39 3.82
174 175 1.072159 GCAGCTTCTCCACCAGTGT 59.928 57.895 0.00 0.00 0.00 3.55
175 176 0.535780 TTGCAGCTTCTCCACCAGTG 60.536 55.000 0.00 0.00 0.00 3.66
176 177 0.403271 ATTGCAGCTTCTCCACCAGT 59.597 50.000 0.00 0.00 0.00 4.00
177 178 2.286872 CTATTGCAGCTTCTCCACCAG 58.713 52.381 0.00 0.00 0.00 4.00
178 179 2.408271 CTATTGCAGCTTCTCCACCA 57.592 50.000 0.00 0.00 0.00 4.17
189 190 0.811616 GACCGGACTGGCTATTGCAG 60.812 60.000 9.46 0.00 43.94 4.41
190 191 1.220749 GACCGGACTGGCTATTGCA 59.779 57.895 9.46 0.00 43.94 4.08
191 192 1.523938 GGACCGGACTGGCTATTGC 60.524 63.158 9.46 0.00 43.94 3.56
192 193 1.146263 GGGACCGGACTGGCTATTG 59.854 63.158 9.46 0.00 43.94 1.90
193 194 2.432300 CGGGACCGGACTGGCTATT 61.432 63.158 9.46 0.00 43.94 1.73
194 195 2.838225 CGGGACCGGACTGGCTAT 60.838 66.667 9.46 0.00 43.94 2.97
195 196 4.371417 ACGGGACCGGACTGGCTA 62.371 66.667 9.46 0.00 43.94 3.93
198 199 3.760035 CAGACGGGACCGGACTGG 61.760 72.222 22.66 0.00 44.69 4.00
199 200 2.989824 ACAGACGGGACCGGACTG 60.990 66.667 26.02 26.02 45.39 3.51
200 201 2.989824 CACAGACGGGACCGGACT 60.990 66.667 9.46 10.83 44.69 3.85
201 202 2.864471 AACACAGACGGGACCGGAC 61.864 63.158 9.46 0.00 44.69 4.79
202 203 2.522436 AACACAGACGGGACCGGA 60.522 61.111 9.46 0.00 44.69 5.14
203 204 2.357034 CAACACAGACGGGACCGG 60.357 66.667 15.92 0.00 44.69 5.28
204 205 1.663702 GTCAACACAGACGGGACCG 60.664 63.158 9.56 9.56 46.03 4.79
205 206 4.355925 GTCAACACAGACGGGACC 57.644 61.111 0.00 0.00 0.00 4.46
211 212 0.030369 AGACCGTCGTCAACACAGAC 59.970 55.000 0.00 0.00 41.87 3.51
212 213 0.742505 AAGACCGTCGTCAACACAGA 59.257 50.000 0.00 0.00 41.87 3.41
213 214 2.410785 TAAGACCGTCGTCAACACAG 57.589 50.000 0.00 0.00 41.87 3.66
214 215 2.099592 ACTTAAGACCGTCGTCAACACA 59.900 45.455 10.09 0.00 41.87 3.72
215 216 2.723143 GACTTAAGACCGTCGTCAACAC 59.277 50.000 10.09 0.00 41.87 3.32
216 217 2.620115 AGACTTAAGACCGTCGTCAACA 59.380 45.455 10.09 0.00 41.87 3.33
217 218 3.232771 GAGACTTAAGACCGTCGTCAAC 58.767 50.000 10.09 0.00 41.87 3.18
218 219 2.096069 CGAGACTTAAGACCGTCGTCAA 60.096 50.000 10.09 0.00 41.87 3.18
219 220 1.462283 CGAGACTTAAGACCGTCGTCA 59.538 52.381 10.09 0.00 41.87 4.35
220 221 1.202009 CCGAGACTTAAGACCGTCGTC 60.202 57.143 10.09 0.00 39.50 4.20
221 222 0.801251 CCGAGACTTAAGACCGTCGT 59.199 55.000 10.09 0.00 35.38 4.34
222 223 0.522915 GCCGAGACTTAAGACCGTCG 60.523 60.000 10.09 9.27 35.38 5.12
223 224 0.524862 TGCCGAGACTTAAGACCGTC 59.475 55.000 10.09 0.00 0.00 4.79
224 225 1.135083 CATGCCGAGACTTAAGACCGT 60.135 52.381 10.09 0.00 0.00 4.83
225 226 1.560923 CATGCCGAGACTTAAGACCG 58.439 55.000 10.09 8.86 0.00 4.79
226 227 1.291132 GCATGCCGAGACTTAAGACC 58.709 55.000 10.09 0.40 0.00 3.85
227 228 1.661112 GTGCATGCCGAGACTTAAGAC 59.339 52.381 16.68 2.62 0.00 3.01
228 229 1.405526 GGTGCATGCCGAGACTTAAGA 60.406 52.381 16.68 0.00 0.00 2.10
229 230 1.009829 GGTGCATGCCGAGACTTAAG 58.990 55.000 16.68 0.00 0.00 1.85
230 231 0.323302 TGGTGCATGCCGAGACTTAA 59.677 50.000 16.68 0.00 0.00 1.85
231 232 0.541392 ATGGTGCATGCCGAGACTTA 59.459 50.000 16.68 0.88 0.00 2.24
232 233 1.028330 CATGGTGCATGCCGAGACTT 61.028 55.000 16.68 0.00 35.02 3.01
233 234 1.450848 CATGGTGCATGCCGAGACT 60.451 57.895 16.68 0.00 35.02 3.24
234 235 1.709147 GACATGGTGCATGCCGAGAC 61.709 60.000 16.68 6.26 44.80 3.36
235 236 1.450134 GACATGGTGCATGCCGAGA 60.450 57.895 16.68 0.00 44.80 4.04
236 237 1.028330 AAGACATGGTGCATGCCGAG 61.028 55.000 16.68 3.18 44.80 4.63
237 238 1.002257 AAGACATGGTGCATGCCGA 60.002 52.632 16.68 4.20 44.80 5.54
238 239 1.028330 AGAAGACATGGTGCATGCCG 61.028 55.000 16.68 0.79 44.80 5.69
239 240 0.737219 GAGAAGACATGGTGCATGCC 59.263 55.000 16.68 6.42 44.80 4.40
240 241 0.737219 GGAGAAGACATGGTGCATGC 59.263 55.000 11.82 11.82 44.80 4.06
241 242 2.118313 TGGAGAAGACATGGTGCATG 57.882 50.000 0.00 0.00 46.18 4.06
242 243 3.457380 ACTATGGAGAAGACATGGTGCAT 59.543 43.478 0.00 0.00 38.40 3.96
243 244 2.840038 ACTATGGAGAAGACATGGTGCA 59.160 45.455 0.00 0.00 38.40 4.57
244 245 3.550437 ACTATGGAGAAGACATGGTGC 57.450 47.619 0.00 0.00 38.40 5.01
245 246 5.352284 GTGTACTATGGAGAAGACATGGTG 58.648 45.833 0.00 0.00 39.81 4.17
246 247 4.406003 GGTGTACTATGGAGAAGACATGGT 59.594 45.833 0.00 0.00 41.85 3.55
247 248 4.405680 TGGTGTACTATGGAGAAGACATGG 59.594 45.833 0.00 0.00 33.59 3.66
248 249 5.598416 TGGTGTACTATGGAGAAGACATG 57.402 43.478 0.00 0.00 0.00 3.21
249 250 6.620877 TTTGGTGTACTATGGAGAAGACAT 57.379 37.500 0.00 0.00 0.00 3.06
250 251 5.568825 GCTTTGGTGTACTATGGAGAAGACA 60.569 44.000 0.00 0.00 0.00 3.41
251 252 4.870991 GCTTTGGTGTACTATGGAGAAGAC 59.129 45.833 0.00 0.00 0.00 3.01
252 253 4.777896 AGCTTTGGTGTACTATGGAGAAGA 59.222 41.667 0.00 0.00 0.00 2.87
253 254 5.091261 AGCTTTGGTGTACTATGGAGAAG 57.909 43.478 0.00 0.00 0.00 2.85
254 255 4.081087 GGAGCTTTGGTGTACTATGGAGAA 60.081 45.833 0.00 0.00 0.00 2.87
255 256 3.451178 GGAGCTTTGGTGTACTATGGAGA 59.549 47.826 0.00 0.00 0.00 3.71
256 257 3.432326 GGGAGCTTTGGTGTACTATGGAG 60.432 52.174 0.00 0.00 0.00 3.86
257 258 2.504175 GGGAGCTTTGGTGTACTATGGA 59.496 50.000 0.00 0.00 0.00 3.41
258 259 2.741878 CGGGAGCTTTGGTGTACTATGG 60.742 54.545 0.00 0.00 0.00 2.74
259 260 2.550978 CGGGAGCTTTGGTGTACTATG 58.449 52.381 0.00 0.00 0.00 2.23
260 261 1.485066 CCGGGAGCTTTGGTGTACTAT 59.515 52.381 0.00 0.00 0.00 2.12
261 262 0.899720 CCGGGAGCTTTGGTGTACTA 59.100 55.000 0.00 0.00 0.00 1.82
262 263 1.677552 CCGGGAGCTTTGGTGTACT 59.322 57.895 0.00 0.00 0.00 2.73
263 264 1.376812 CCCGGGAGCTTTGGTGTAC 60.377 63.158 18.48 0.00 0.00 2.90
264 265 3.074281 CCCGGGAGCTTTGGTGTA 58.926 61.111 18.48 0.00 0.00 2.90
265 266 4.660938 GCCCGGGAGCTTTGGTGT 62.661 66.667 29.31 0.00 0.00 4.16
266 267 4.659172 TGCCCGGGAGCTTTGGTG 62.659 66.667 29.31 0.00 0.00 4.17
267 268 4.660938 GTGCCCGGGAGCTTTGGT 62.661 66.667 29.31 0.00 0.00 3.67
281 282 2.456594 TTTTGCAGATGTCCGCGTGC 62.457 55.000 4.92 7.88 36.42 5.34
282 283 0.040514 TTTTTGCAGATGTCCGCGTG 60.041 50.000 4.92 0.00 0.00 5.34
283 284 2.326222 TTTTTGCAGATGTCCGCGT 58.674 47.368 4.92 0.00 0.00 6.01
306 307 1.359459 GGAACGCGAGGACACATTCC 61.359 60.000 15.93 9.34 46.33 3.01
307 308 0.669318 TGGAACGCGAGGACACATTC 60.669 55.000 15.93 2.71 0.00 2.67
308 309 0.036388 ATGGAACGCGAGGACACATT 60.036 50.000 15.93 0.00 0.00 2.71
309 310 0.460284 GATGGAACGCGAGGACACAT 60.460 55.000 15.93 8.15 0.00 3.21
310 311 1.080093 GATGGAACGCGAGGACACA 60.080 57.895 15.93 2.89 0.00 3.72
311 312 1.810030 GGATGGAACGCGAGGACAC 60.810 63.158 15.93 0.00 0.00 3.67
312 313 2.577059 GGATGGAACGCGAGGACA 59.423 61.111 15.93 6.55 0.00 4.02
313 314 2.202892 GGGATGGAACGCGAGGAC 60.203 66.667 15.93 0.00 0.00 3.85
314 315 0.757561 TATGGGATGGAACGCGAGGA 60.758 55.000 15.93 0.00 0.00 3.71
315 316 0.105964 TTATGGGATGGAACGCGAGG 59.894 55.000 15.93 0.00 0.00 4.63
316 317 1.948104 TTTATGGGATGGAACGCGAG 58.052 50.000 15.93 0.00 0.00 5.03
317 318 2.489971 GATTTATGGGATGGAACGCGA 58.510 47.619 15.93 0.00 0.00 5.87
318 319 1.194547 CGATTTATGGGATGGAACGCG 59.805 52.381 3.53 3.53 0.00 6.01
319 320 2.218603 ACGATTTATGGGATGGAACGC 58.781 47.619 0.00 0.00 0.00 4.84
320 321 4.373527 TGTACGATTTATGGGATGGAACG 58.626 43.478 0.00 0.00 0.00 3.95
321 322 5.607477 TCTGTACGATTTATGGGATGGAAC 58.393 41.667 0.00 0.00 0.00 3.62
322 323 5.880164 TCTGTACGATTTATGGGATGGAA 57.120 39.130 0.00 0.00 0.00 3.53
323 324 7.398904 TGATATCTGTACGATTTATGGGATGGA 59.601 37.037 3.98 0.00 33.48 3.41
324 325 7.555965 TGATATCTGTACGATTTATGGGATGG 58.444 38.462 3.98 0.00 33.48 3.51
325 326 8.253810 ACTGATATCTGTACGATTTATGGGATG 58.746 37.037 13.07 0.00 33.48 3.51
326 327 8.367660 ACTGATATCTGTACGATTTATGGGAT 57.632 34.615 13.07 0.00 33.48 3.85
327 328 7.776618 ACTGATATCTGTACGATTTATGGGA 57.223 36.000 13.07 0.00 33.48 4.37
328 329 8.833231 AAACTGATATCTGTACGATTTATGGG 57.167 34.615 14.80 0.00 33.48 4.00
329 330 8.639428 CGAAACTGATATCTGTACGATTTATGG 58.361 37.037 23.88 6.02 33.51 2.74
330 331 9.394477 TCGAAACTGATATCTGTACGATTTATG 57.606 33.333 25.34 11.62 34.71 1.90
331 332 9.395707 GTCGAAACTGATATCTGTACGATTTAT 57.604 33.333 28.43 9.48 38.14 1.40
332 333 8.618677 AGTCGAAACTGATATCTGTACGATTTA 58.381 33.333 28.43 15.64 38.14 1.40
333 334 7.481642 AGTCGAAACTGATATCTGTACGATTT 58.518 34.615 28.43 22.00 38.14 2.17
334 335 7.028926 AGTCGAAACTGATATCTGTACGATT 57.971 36.000 28.43 24.87 38.14 3.34
335 336 6.621316 AGTCGAAACTGATATCTGTACGAT 57.379 37.500 28.43 20.62 38.14 3.73
336 337 7.725818 ATAGTCGAAACTGATATCTGTACGA 57.274 36.000 25.34 25.34 36.92 3.43
337 338 8.783999 AAATAGTCGAAACTGATATCTGTACG 57.216 34.615 23.03 23.03 36.92 3.67
363 364 1.133915 ACGGTCTCTTTTGGAGCCAAA 60.134 47.619 10.49 10.49 43.23 3.28
364 365 0.472471 ACGGTCTCTTTTGGAGCCAA 59.528 50.000 0.00 0.00 41.60 4.52
365 366 1.275291 CTACGGTCTCTTTTGGAGCCA 59.725 52.381 0.00 0.00 41.60 4.75
366 367 1.549170 TCTACGGTCTCTTTTGGAGCC 59.451 52.381 0.00 0.00 41.60 4.70
367 368 2.608268 GTCTACGGTCTCTTTTGGAGC 58.392 52.381 0.00 0.00 41.60 4.70
368 369 2.415625 CGGTCTACGGTCTCTTTTGGAG 60.416 54.545 0.00 0.00 40.13 3.86
369 370 1.542915 CGGTCTACGGTCTCTTTTGGA 59.457 52.381 0.00 0.00 39.42 3.53
370 371 1.992170 CGGTCTACGGTCTCTTTTGG 58.008 55.000 0.00 0.00 39.42 3.28
371 372 1.347320 GCGGTCTACGGTCTCTTTTG 58.653 55.000 0.00 0.00 44.51 2.44
372 373 0.109412 CGCGGTCTACGGTCTCTTTT 60.109 55.000 0.00 0.00 44.51 2.27
373 374 1.505353 CGCGGTCTACGGTCTCTTT 59.495 57.895 0.00 0.00 44.51 2.52
374 375 2.404995 CCGCGGTCTACGGTCTCTT 61.405 63.158 19.50 0.00 45.70 2.85
375 376 2.823147 CCGCGGTCTACGGTCTCT 60.823 66.667 19.50 0.00 45.70 3.10
381 382 2.503375 GTGTGACCGCGGTCTACG 60.503 66.667 46.72 17.54 44.80 3.51
382 383 2.503375 CGTGTGACCGCGGTCTAC 60.503 66.667 46.72 40.43 44.80 2.59
389 390 1.918609 GAAGAAGATACGTGTGACCGC 59.081 52.381 0.00 0.00 0.00 5.68
390 391 3.489180 AGAAGAAGATACGTGTGACCG 57.511 47.619 0.00 0.00 0.00 4.79
391 392 4.806330 TCAAGAAGAAGATACGTGTGACC 58.194 43.478 0.00 0.00 0.00 4.02
392 393 7.541091 TGTTATCAAGAAGAAGATACGTGTGAC 59.459 37.037 0.00 0.00 0.00 3.67
393 394 7.599171 TGTTATCAAGAAGAAGATACGTGTGA 58.401 34.615 0.00 0.00 0.00 3.58
394 395 7.812309 TGTTATCAAGAAGAAGATACGTGTG 57.188 36.000 0.00 0.00 0.00 3.82
395 396 8.827177 TTTGTTATCAAGAAGAAGATACGTGT 57.173 30.769 0.00 0.00 34.88 4.49
396 397 7.900352 GCTTTGTTATCAAGAAGAAGATACGTG 59.100 37.037 0.00 0.00 34.88 4.49
397 398 7.602644 TGCTTTGTTATCAAGAAGAAGATACGT 59.397 33.333 0.00 0.00 34.88 3.57
398 399 7.963981 TGCTTTGTTATCAAGAAGAAGATACG 58.036 34.615 0.00 0.00 34.88 3.06
399 400 7.907563 GCTGCTTTGTTATCAAGAAGAAGATAC 59.092 37.037 0.00 0.00 34.88 2.24
400 401 7.607607 TGCTGCTTTGTTATCAAGAAGAAGATA 59.392 33.333 0.00 0.00 34.88 1.98
401 402 6.432162 TGCTGCTTTGTTATCAAGAAGAAGAT 59.568 34.615 0.00 0.00 34.88 2.40
411 412 5.599732 ACAAACAATGCTGCTTTGTTATCA 58.400 33.333 33.00 0.42 44.32 2.15
412 413 6.346838 GGAACAAACAATGCTGCTTTGTTATC 60.347 38.462 33.00 28.79 44.32 1.75
413 414 5.466393 GGAACAAACAATGCTGCTTTGTTAT 59.534 36.000 33.00 25.00 44.32 1.89
414 415 4.808364 GGAACAAACAATGCTGCTTTGTTA 59.192 37.500 33.00 2.54 44.32 2.41
417 421 3.460103 AGGAACAAACAATGCTGCTTTG 58.540 40.909 22.15 22.15 33.47 2.77
420 424 3.825143 AAAGGAACAAACAATGCTGCT 57.175 38.095 0.00 0.00 0.00 4.24
450 454 2.487762 CCACCTGCGATAACAATGTTGT 59.512 45.455 9.15 1.14 44.72 3.32
534 541 1.113517 TATCGTGTCTGCCTAGGCCC 61.114 60.000 30.81 18.40 41.09 5.80
580 593 0.816825 CTGTGCTGTGCTGTCCAAGT 60.817 55.000 0.00 0.00 0.00 3.16
608 621 1.271163 CGCAAAGGGGTAAAGGAGACA 60.271 52.381 0.00 0.00 0.00 3.41
610 623 1.354101 TCGCAAAGGGGTAAAGGAGA 58.646 50.000 0.00 0.00 0.00 3.71
628 650 0.452184 TGGCTCTCGATGACGACTTC 59.548 55.000 0.00 0.00 43.81 3.01
697 719 7.756722 CAGTTGTAAAAATCAAGTCATCATCCC 59.243 37.037 0.00 0.00 0.00 3.85
719 741 2.251642 GGCGCTTGTTCGTCCAGTT 61.252 57.895 7.64 0.00 0.00 3.16
724 746 2.251371 GTTGGGCGCTTGTTCGTC 59.749 61.111 7.64 0.00 0.00 4.20
725 747 3.645975 CGTTGGGCGCTTGTTCGT 61.646 61.111 7.64 0.00 0.00 3.85
726 748 4.383602 CCGTTGGGCGCTTGTTCG 62.384 66.667 7.64 6.47 39.71 3.95
727 749 4.038080 CCCGTTGGGCGCTTGTTC 62.038 66.667 7.64 0.00 35.35 3.18
734 756 3.961838 TTCCGAATCCCGTTGGGCG 62.962 63.158 0.00 0.00 43.94 6.13
752 774 7.307930 CCTCTGTTCTTTGCTGTTTTTGTTTTT 60.308 33.333 0.00 0.00 0.00 1.94
755 777 5.047377 TCCTCTGTTCTTTGCTGTTTTTGTT 60.047 36.000 0.00 0.00 0.00 2.83
757 779 4.997565 TCCTCTGTTCTTTGCTGTTTTTG 58.002 39.130 0.00 0.00 0.00 2.44
763 785 4.637483 TTGTTTCCTCTGTTCTTTGCTG 57.363 40.909 0.00 0.00 0.00 4.41
766 788 8.532977 TTTTTCTTTGTTTCCTCTGTTCTTTG 57.467 30.769 0.00 0.00 0.00 2.77
816 843 2.370633 GAGGGAGGGAGGAAGCCT 59.629 66.667 0.00 0.00 36.03 4.58
956 1000 1.450905 CTCGTTTTATACCGCGCTAGC 59.549 52.381 5.56 4.06 40.74 3.42
957 1001 1.450905 GCTCGTTTTATACCGCGCTAG 59.549 52.381 5.56 0.00 32.49 3.42
958 1002 1.480205 GCTCGTTTTATACCGCGCTA 58.520 50.000 5.56 0.00 32.49 4.26
959 1003 1.477030 CGCTCGTTTTATACCGCGCT 61.477 55.000 5.56 0.00 36.71 5.92
970 1024 1.517257 CTGGATCTCGCGCTCGTTT 60.517 57.895 5.56 0.00 36.96 3.60
1175 1229 3.575687 ACAGACACAGTGATGAGTGATCA 59.424 43.478 7.81 0.00 38.87 2.92
1197 1251 2.850130 ACCGGGGTAAGCCACACA 60.850 61.111 6.32 0.00 38.35 3.72
1199 1253 1.844289 AAGACCGGGGTAAGCCACA 60.844 57.895 6.32 0.00 38.35 4.17
1200 1254 1.376812 CAAGACCGGGGTAAGCCAC 60.377 63.158 6.32 0.00 36.17 5.01
1201 1255 3.074281 CAAGACCGGGGTAAGCCA 58.926 61.111 6.32 0.00 36.17 4.75
1202 1256 2.437895 GCAAGACCGGGGTAAGCC 60.438 66.667 6.32 0.00 0.00 4.35
1203 1257 0.608308 AAAGCAAGACCGGGGTAAGC 60.608 55.000 6.32 2.88 0.00 3.09
1205 1259 0.250989 CCAAAGCAAGACCGGGGTAA 60.251 55.000 6.32 0.00 0.00 2.85
1206 1260 1.377229 CCAAAGCAAGACCGGGGTA 59.623 57.895 6.32 0.00 0.00 3.69
1207 1261 2.115266 CCAAAGCAAGACCGGGGT 59.885 61.111 6.32 0.00 0.00 4.95
1208 1262 2.676471 CCCAAAGCAAGACCGGGG 60.676 66.667 6.32 0.00 32.88 5.73
1209 1263 2.676471 CCCCAAAGCAAGACCGGG 60.676 66.667 6.32 0.00 36.59 5.73
1210 1264 2.676471 CCCCCAAAGCAAGACCGG 60.676 66.667 0.00 0.00 0.00 5.28
1211 1265 2.115266 ACCCCCAAAGCAAGACCG 59.885 61.111 0.00 0.00 0.00 4.79
1212 1266 0.251787 ATCACCCCCAAAGCAAGACC 60.252 55.000 0.00 0.00 0.00 3.85
1213 1267 1.632589 AATCACCCCCAAAGCAAGAC 58.367 50.000 0.00 0.00 0.00 3.01
1214 1268 3.534357 TTAATCACCCCCAAAGCAAGA 57.466 42.857 0.00 0.00 0.00 3.02
1215 1269 4.824479 AATTAATCACCCCCAAAGCAAG 57.176 40.909 0.00 0.00 0.00 4.01
1216 1270 5.337788 ACTAATTAATCACCCCCAAAGCAA 58.662 37.500 0.00 0.00 0.00 3.91
1217 1271 4.941713 ACTAATTAATCACCCCCAAAGCA 58.058 39.130 0.00 0.00 0.00 3.91
1218 1272 5.932619 AACTAATTAATCACCCCCAAAGC 57.067 39.130 0.00 0.00 0.00 3.51
1219 1273 7.718334 AGAAACTAATTAATCACCCCCAAAG 57.282 36.000 0.00 0.00 0.00 2.77
1220 1274 7.179516 GGAAGAAACTAATTAATCACCCCCAAA 59.820 37.037 0.00 0.00 0.00 3.28
1221 1275 6.666113 GGAAGAAACTAATTAATCACCCCCAA 59.334 38.462 0.00 0.00 0.00 4.12
1222 1276 6.192044 GGAAGAAACTAATTAATCACCCCCA 58.808 40.000 0.00 0.00 0.00 4.96
1225 1279 5.220989 GCCGGAAGAAACTAATTAATCACCC 60.221 44.000 5.05 0.00 0.00 4.61
1280 1334 3.257873 CACTCACTCAGACAACAGATCCT 59.742 47.826 0.00 0.00 0.00 3.24
1287 1341 3.560902 TCGATCACTCACTCAGACAAC 57.439 47.619 0.00 0.00 0.00 3.32
1289 1343 3.181506 CGAATCGATCACTCACTCAGACA 60.182 47.826 0.00 0.00 0.00 3.41
1293 1347 1.405463 CCCGAATCGATCACTCACTCA 59.595 52.381 3.36 0.00 0.00 3.41
1314 1368 3.847602 CCAGCAGAGAGGAGGCGG 61.848 72.222 0.00 0.00 0.00 6.13
1320 1374 0.032615 ACTAGTCCCCAGCAGAGAGG 60.033 60.000 0.00 0.00 0.00 3.69
1321 1375 2.173782 TCTACTAGTCCCCAGCAGAGAG 59.826 54.545 0.00 0.00 0.00 3.20
1325 1379 1.967066 CCATCTACTAGTCCCCAGCAG 59.033 57.143 0.00 0.00 0.00 4.24
1332 1421 5.203060 GGACACATTCCATCTACTAGTCC 57.797 47.826 0.00 0.00 45.10 3.85
1370 1465 4.458397 CAATCATGCAATCTACTGTCCCT 58.542 43.478 0.00 0.00 0.00 4.20
1373 1468 5.007430 CAGACCAATCATGCAATCTACTGTC 59.993 44.000 0.00 0.00 0.00 3.51
1374 1469 4.880120 CAGACCAATCATGCAATCTACTGT 59.120 41.667 0.00 0.00 0.00 3.55
1375 1470 5.121105 TCAGACCAATCATGCAATCTACTG 58.879 41.667 0.00 0.00 0.00 2.74
1401 1496 3.505386 TGGCCATAAGAAAACACATGGT 58.495 40.909 0.00 0.00 40.13 3.55
1402 1497 4.533919 TTGGCCATAAGAAAACACATGG 57.466 40.909 6.09 0.00 40.80 3.66
1408 1503 9.435688 ACTAAATTGAATTGGCCATAAGAAAAC 57.564 29.630 6.09 0.00 0.00 2.43
1411 1506 7.180051 ACCACTAAATTGAATTGGCCATAAGAA 59.820 33.333 6.09 0.00 0.00 2.52
1412 1507 6.667414 ACCACTAAATTGAATTGGCCATAAGA 59.333 34.615 6.09 0.00 0.00 2.10
1417 1512 4.590647 TCAACCACTAAATTGAATTGGCCA 59.409 37.500 0.00 0.00 31.95 5.36
1418 1513 5.146010 TCAACCACTAAATTGAATTGGCC 57.854 39.130 0.00 0.00 31.95 5.36
1432 1527 7.565680 CAGGACCTAACTTATTATCAACCACT 58.434 38.462 0.00 0.00 0.00 4.00
1433 1528 6.260271 GCAGGACCTAACTTATTATCAACCAC 59.740 42.308 0.00 0.00 0.00 4.16
1438 1533 5.509163 GCTCGCAGGACCTAACTTATTATCA 60.509 44.000 0.00 0.00 0.00 2.15
1442 1537 2.766828 AGCTCGCAGGACCTAACTTATT 59.233 45.455 0.00 0.00 0.00 1.40
1443 1538 2.101582 CAGCTCGCAGGACCTAACTTAT 59.898 50.000 0.00 0.00 0.00 1.73
1444 1539 1.476891 CAGCTCGCAGGACCTAACTTA 59.523 52.381 0.00 0.00 0.00 2.24
1445 1540 0.247736 CAGCTCGCAGGACCTAACTT 59.752 55.000 0.00 0.00 0.00 2.66
1449 1544 0.684479 ATCACAGCTCGCAGGACCTA 60.684 55.000 0.00 0.00 0.00 3.08
1450 1545 1.986757 ATCACAGCTCGCAGGACCT 60.987 57.895 0.00 0.00 0.00 3.85
1454 1554 1.079612 TGACATCACAGCTCGCAGG 60.080 57.895 0.00 0.00 0.00 4.85
1455 1555 1.681025 CGTGACATCACAGCTCGCAG 61.681 60.000 12.32 0.00 46.75 5.18
1459 1559 1.470494 TCTCTCGTGACATCACAGCTC 59.530 52.381 12.32 0.00 46.75 4.09
1463 1563 1.200948 CAGCTCTCTCGTGACATCACA 59.799 52.381 12.32 0.00 46.75 3.58
1470 1570 1.403382 GCATCAACAGCTCTCTCGTGA 60.403 52.381 0.00 0.00 0.00 4.35
1474 1574 0.108424 ACGGCATCAACAGCTCTCTC 60.108 55.000 0.00 0.00 0.00 3.20
1485 1585 2.209273 GCACACATACATACGGCATCA 58.791 47.619 0.00 0.00 0.00 3.07
1487 1587 1.593196 GGCACACATACATACGGCAT 58.407 50.000 0.00 0.00 0.00 4.40
1489 1589 1.164041 GGGGCACACATACATACGGC 61.164 60.000 0.00 0.00 0.00 5.68
1490 1590 0.179234 TGGGGCACACATACATACGG 59.821 55.000 0.00 0.00 0.00 4.02
1491 1591 2.254546 ATGGGGCACACATACATACG 57.745 50.000 0.00 0.00 0.00 3.06
1492 1592 3.699038 ACAAATGGGGCACACATACATAC 59.301 43.478 0.00 0.00 0.00 2.39
1493 1593 3.951037 GACAAATGGGGCACACATACATA 59.049 43.478 0.00 0.00 0.00 2.29
1501 1601 0.105760 AACAGGACAAATGGGGCACA 60.106 50.000 0.00 0.00 0.00 4.57
1505 1605 5.126061 CAGATTCTAAACAGGACAAATGGGG 59.874 44.000 0.00 0.00 0.00 4.96
1508 1608 6.824305 ACCAGATTCTAAACAGGACAAATG 57.176 37.500 0.00 0.00 0.00 2.32
1509 1609 7.839680 AAACCAGATTCTAAACAGGACAAAT 57.160 32.000 0.00 0.00 0.00 2.32
1512 1612 6.262273 GTCAAAACCAGATTCTAAACAGGACA 59.738 38.462 0.00 0.00 0.00 4.02
1513 1613 6.565999 CGTCAAAACCAGATTCTAAACAGGAC 60.566 42.308 0.00 0.00 0.00 3.85
1514 1614 5.468746 CGTCAAAACCAGATTCTAAACAGGA 59.531 40.000 0.00 0.00 0.00 3.86
1515 1615 5.689819 CGTCAAAACCAGATTCTAAACAGG 58.310 41.667 0.00 0.00 0.00 4.00
1516 1616 5.147162 GCGTCAAAACCAGATTCTAAACAG 58.853 41.667 0.00 0.00 0.00 3.16
1517 1617 4.023536 GGCGTCAAAACCAGATTCTAAACA 60.024 41.667 0.00 0.00 0.00 2.83
1518 1618 4.473199 GGCGTCAAAACCAGATTCTAAAC 58.527 43.478 0.00 0.00 0.00 2.01
1519 1619 3.187637 CGGCGTCAAAACCAGATTCTAAA 59.812 43.478 0.00 0.00 0.00 1.85
1538 1738 1.503542 CTGTTGGAATGCTCACGGC 59.496 57.895 0.00 0.00 42.22 5.68
1539 1739 1.926511 GCCTGTTGGAATGCTCACGG 61.927 60.000 0.00 0.00 34.57 4.94
1540 1740 1.236616 TGCCTGTTGGAATGCTCACG 61.237 55.000 0.00 0.00 34.57 4.35
1542 1742 2.804986 TATGCCTGTTGGAATGCTCA 57.195 45.000 0.00 0.00 32.64 4.26
1543 1743 4.217118 CCTAATATGCCTGTTGGAATGCTC 59.783 45.833 0.00 0.00 32.64 4.26
1546 1746 4.147321 AGCCTAATATGCCTGTTGGAATG 58.853 43.478 0.00 0.00 32.64 2.67
1551 1751 7.559486 TCATATCTAGCCTAATATGCCTGTTG 58.441 38.462 4.88 0.00 36.32 3.33
1552 1752 7.634649 GCTCATATCTAGCCTAATATGCCTGTT 60.635 40.741 4.88 0.00 36.32 3.16
1555 1755 6.142498 AGCTCATATCTAGCCTAATATGCCT 58.858 40.000 3.46 2.42 41.02 4.75
1556 1756 6.418057 AGCTCATATCTAGCCTAATATGCC 57.582 41.667 3.46 0.74 41.02 4.40
1563 1763 6.551227 TCAAACTGAAGCTCATATCTAGCCTA 59.449 38.462 3.46 0.00 41.02 3.93
1577 1777 3.863142 ATCCAAGCATCAAACTGAAGC 57.137 42.857 0.00 0.00 40.99 3.86
1581 1781 5.242393 CCCCTAATATCCAAGCATCAAACTG 59.758 44.000 0.00 0.00 0.00 3.16
1583 1783 5.140454 ACCCCTAATATCCAAGCATCAAAC 58.860 41.667 0.00 0.00 0.00 2.93
1586 1786 6.032039 AGATACCCCTAATATCCAAGCATCA 58.968 40.000 0.00 0.00 30.54 3.07
1588 1788 6.032039 TCAGATACCCCTAATATCCAAGCAT 58.968 40.000 0.00 0.00 30.54 3.79
1589 1789 5.411493 TCAGATACCCCTAATATCCAAGCA 58.589 41.667 0.00 0.00 30.54 3.91
1590 1790 6.156949 TCATCAGATACCCCTAATATCCAAGC 59.843 42.308 0.00 0.00 30.54 4.01
1592 1792 9.439461 CTATCATCAGATACCCCTAATATCCAA 57.561 37.037 0.00 0.00 35.67 3.53
1631 1831 4.441356 GGGCATCAAAACAGACTTCAAACA 60.441 41.667 0.00 0.00 0.00 2.83
1632 1832 4.051237 GGGCATCAAAACAGACTTCAAAC 58.949 43.478 0.00 0.00 0.00 2.93
1634 1834 3.565307 AGGGCATCAAAACAGACTTCAA 58.435 40.909 0.00 0.00 0.00 2.69
1636 1836 2.160417 CGAGGGCATCAAAACAGACTTC 59.840 50.000 0.00 0.00 0.00 3.01
1637 1837 2.154462 CGAGGGCATCAAAACAGACTT 58.846 47.619 0.00 0.00 0.00 3.01
1638 1838 1.813513 CGAGGGCATCAAAACAGACT 58.186 50.000 0.00 0.00 0.00 3.24
1639 1839 0.169009 GCGAGGGCATCAAAACAGAC 59.831 55.000 0.00 0.00 39.62 3.51
1640 1840 0.250684 TGCGAGGGCATCAAAACAGA 60.251 50.000 0.00 0.00 46.21 3.41
1641 1841 2.256391 TGCGAGGGCATCAAAACAG 58.744 52.632 0.00 0.00 46.21 3.16
1642 1842 4.490696 TGCGAGGGCATCAAAACA 57.509 50.000 0.00 0.00 46.21 2.83
1668 1868 2.645838 ACTGCACCATCAACAGACTT 57.354 45.000 0.00 0.00 35.38 3.01
1669 1869 2.645838 AACTGCACCATCAACAGACT 57.354 45.000 0.00 0.00 35.38 3.24
1670 1870 2.880890 AGAAACTGCACCATCAACAGAC 59.119 45.455 0.00 0.00 35.38 3.51
1672 1872 2.030540 CCAGAAACTGCACCATCAACAG 60.031 50.000 0.00 0.00 37.45 3.16
1674 1874 1.270550 CCCAGAAACTGCACCATCAAC 59.729 52.381 0.00 0.00 0.00 3.18
1679 1879 2.520458 CCCCCAGAAACTGCACCA 59.480 61.111 0.00 0.00 0.00 4.17
1694 1894 1.909700 TCATGCTGAAACTGAACCCC 58.090 50.000 0.00 0.00 0.00 4.95
1695 1895 2.887152 AGTTCATGCTGAAACTGAACCC 59.113 45.455 10.17 0.00 46.28 4.11
1706 1910 4.692155 TGATGACTGTTACAGTTCATGCTG 59.308 41.667 24.13 0.00 45.44 4.41
1712 1916 3.433615 GCAGGTGATGACTGTTACAGTTC 59.566 47.826 19.59 13.99 45.44 3.01
1718 1922 2.899900 AGAGTGCAGGTGATGACTGTTA 59.100 45.455 0.00 0.00 38.22 2.41
1742 1946 8.483307 AACAACACGAAAAGTAAGAAAGACTA 57.517 30.769 0.00 0.00 0.00 2.59
1743 1947 6.980051 ACAACACGAAAAGTAAGAAAGACT 57.020 33.333 0.00 0.00 0.00 3.24
1744 1948 8.598075 TCTAACAACACGAAAAGTAAGAAAGAC 58.402 33.333 0.00 0.00 0.00 3.01
1745 1949 8.706492 TCTAACAACACGAAAAGTAAGAAAGA 57.294 30.769 0.00 0.00 0.00 2.52
1746 1950 9.582223 GATCTAACAACACGAAAAGTAAGAAAG 57.418 33.333 0.00 0.00 0.00 2.62
1747 1951 9.321562 AGATCTAACAACACGAAAAGTAAGAAA 57.678 29.630 0.00 0.00 0.00 2.52
1748 1952 8.882415 AGATCTAACAACACGAAAAGTAAGAA 57.118 30.769 0.00 0.00 0.00 2.52
1759 1963 5.514559 CAGTCATCAGAGATCTAACAACACG 59.485 44.000 0.00 0.00 0.00 4.49
1776 1983 2.834574 ATCGTCACTCGTCAGTCATC 57.165 50.000 0.00 0.00 40.80 2.92
1934 2141 5.847111 AACAGATAAGTGCCATACTCGTA 57.153 39.130 0.00 0.00 39.18 3.43
1944 2151 5.236047 CAGCAGAGGATAAACAGATAAGTGC 59.764 44.000 0.00 0.00 0.00 4.40
1967 2174 7.831690 TCTGGCATAACATTAACATTAGAACCA 59.168 33.333 0.00 0.00 0.00 3.67
1973 2180 8.849168 CATCCTTCTGGCATAACATTAACATTA 58.151 33.333 0.00 0.00 0.00 1.90
1992 2199 3.950395 AGTCAAATAAGCCAGCATCCTTC 59.050 43.478 0.00 0.00 0.00 3.46
2015 2222 8.647143 ACAAACAAACAAACAAGAGGATATTG 57.353 30.769 0.00 0.00 0.00 1.90
2032 2239 4.691216 GCACCCTACAAACAAACAAACAAA 59.309 37.500 0.00 0.00 0.00 2.83
2033 2240 4.021016 AGCACCCTACAAACAAACAAACAA 60.021 37.500 0.00 0.00 0.00 2.83
2034 2241 3.511934 AGCACCCTACAAACAAACAAACA 59.488 39.130 0.00 0.00 0.00 2.83
2035 2242 4.109766 GAGCACCCTACAAACAAACAAAC 58.890 43.478 0.00 0.00 0.00 2.93
2036 2243 4.020543 AGAGCACCCTACAAACAAACAAA 58.979 39.130 0.00 0.00 0.00 2.83
2037 2244 3.380004 CAGAGCACCCTACAAACAAACAA 59.620 43.478 0.00 0.00 0.00 2.83
2038 2245 2.948979 CAGAGCACCCTACAAACAAACA 59.051 45.455 0.00 0.00 0.00 2.83
2039 2246 3.211045 TCAGAGCACCCTACAAACAAAC 58.789 45.455 0.00 0.00 0.00 2.93
2120 2335 1.135199 TCAACCTCGCTATCGTGAACC 60.135 52.381 0.00 0.00 36.96 3.62
2126 2341 2.282555 CACAATGTCAACCTCGCTATCG 59.717 50.000 0.00 0.00 0.00 2.92
2159 2374 1.062488 AAGAGGTCAGGTTGGGCTGT 61.062 55.000 0.00 0.00 0.00 4.40
2325 2540 1.067295 TGGCCAGAGAAGTTGATGGT 58.933 50.000 0.00 0.00 35.17 3.55
2345 2560 2.279935 ACCCAAAGTAACGGCATGAA 57.720 45.000 0.00 0.00 0.00 2.57
2486 2701 4.396166 AGTGTGTTGAAGAAGAAAGGTGTG 59.604 41.667 0.00 0.00 0.00 3.82
2489 2704 4.589908 ACAGTGTGTTGAAGAAGAAAGGT 58.410 39.130 0.00 0.00 0.00 3.50
2597 2812 2.036571 CGCATTGTGCAGCCAGAGA 61.037 57.895 2.63 0.00 45.36 3.10
2663 2878 4.637534 GTCATCACAGCATCCACATAGTTT 59.362 41.667 0.00 0.00 0.00 2.66
2859 3074 1.012486 GTCTTCACGCCGTAACCCAG 61.012 60.000 0.00 0.00 0.00 4.45
2864 3079 2.259204 CCGGTCTTCACGCCGTAA 59.741 61.111 0.00 0.00 45.91 3.18
2882 3097 4.467438 TCACTTCTCATCACATAAGGCAGA 59.533 41.667 0.00 0.00 0.00 4.26
2966 3181 3.652869 ACTCAAAGAAGGGAAGGACATCA 59.347 43.478 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.