Multiple sequence alignment - TraesCS2D01G498800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G498800 chr2D 100.000 2568 0 0 458 3025 594069223 594066656 0.000000e+00 4743.0
1 TraesCS2D01G498800 chr2D 85.228 1469 134 48 825 2246 593851234 593852666 0.000000e+00 1434.0
2 TraesCS2D01G498800 chr2D 84.670 1409 123 52 825 2173 593857373 593858748 0.000000e+00 1319.0
3 TraesCS2D01G498800 chr2D 84.476 1430 121 49 825 2173 593899028 593897619 0.000000e+00 1317.0
4 TraesCS2D01G498800 chr2D 84.325 1429 124 48 825 2173 593919587 593918179 0.000000e+00 1306.0
5 TraesCS2D01G498800 chr2D 100.000 176 0 0 1 176 594069680 594069505 2.910000e-85 326.0
6 TraesCS2D01G498800 chr2D 96.471 85 3 0 2941 3025 592176397 592176313 1.130000e-29 141.0
7 TraesCS2D01G498800 chr2D 95.349 86 4 0 2940 3025 592146016 592145931 1.460000e-28 137.0
8 TraesCS2D01G498800 chr2D 95.349 86 4 0 2940 3025 594053009 594052924 1.460000e-28 137.0
9 TraesCS2D01G498800 chr2D 94.253 87 4 1 2939 3025 44902596 44902681 6.800000e-27 132.0
10 TraesCS2D01G498800 chr2A 92.430 1889 106 14 1073 2940 728753334 728751462 0.000000e+00 2662.0
11 TraesCS2D01G498800 chr2A 88.684 1193 103 17 1055 2228 728617615 728618794 0.000000e+00 1426.0
12 TraesCS2D01G498800 chr2A 84.670 1396 125 52 825 2164 728648781 728650143 0.000000e+00 1310.0
13 TraesCS2D01G498800 chr2A 87.727 1157 93 26 1055 2173 728728167 728727022 0.000000e+00 1304.0
14 TraesCS2D01G498800 chr2A 91.150 226 16 3 704 926 728753642 728753418 1.360000e-78 303.0
15 TraesCS2D01G498800 chr2A 75.676 222 23 16 826 1038 728617375 728617574 6.950000e-12 82.4
16 TraesCS2D01G498800 chr2A 92.982 57 1 1 950 1006 728753421 728753368 2.500000e-11 80.5
17 TraesCS2D01G498800 chr2A 74.888 223 22 18 825 1038 728728397 728728200 1.500000e-08 71.3
18 TraesCS2D01G498800 chr2B 91.178 1587 67 30 737 2275 721111494 721109933 0.000000e+00 2087.0
19 TraesCS2D01G498800 chr2B 89.032 1240 97 23 826 2046 720923852 720922633 0.000000e+00 1500.0
20 TraesCS2D01G498800 chr2B 84.315 1256 127 36 968 2173 720817300 720818535 0.000000e+00 1164.0
21 TraesCS2D01G498800 chr2B 95.349 86 4 0 2940 3025 736883888 736883803 1.460000e-28 137.0
22 TraesCS2D01G498800 chr2B 95.349 86 2 2 2940 3025 736859937 736859854 5.260000e-28 135.0
23 TraesCS2D01G498800 chr5D 98.837 86 1 0 2940 3025 244151321 244151406 1.450000e-33 154.0
24 TraesCS2D01G498800 chr5D 95.349 86 4 0 2940 3025 244206251 244206336 1.460000e-28 137.0
25 TraesCS2D01G498800 chr4B 96.471 85 3 0 2941 3025 27288148 27288064 1.130000e-29 141.0
26 TraesCS2D01G498800 chr3B 85.455 110 10 1 1 104 32438885 32438776 3.190000e-20 110.0
27 TraesCS2D01G498800 chr7D 84.545 110 11 1 1 104 5197105 5197214 1.480000e-18 104.0
28 TraesCS2D01G498800 chr1D 90.541 74 7 0 31 104 155717855 155717782 6.900000e-17 99.0
29 TraesCS2D01G498800 chr1D 85.882 85 7 3 97 176 99700762 99700678 5.370000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G498800 chr2D 594066656 594069680 3024 True 2534.500000 4743 100.000000 1 3025 2 chr2D.!!$R6 3024
1 TraesCS2D01G498800 chr2D 593851234 593852666 1432 False 1434.000000 1434 85.228000 825 2246 1 chr2D.!!$F2 1421
2 TraesCS2D01G498800 chr2D 593857373 593858748 1375 False 1319.000000 1319 84.670000 825 2173 1 chr2D.!!$F3 1348
3 TraesCS2D01G498800 chr2D 593897619 593899028 1409 True 1317.000000 1317 84.476000 825 2173 1 chr2D.!!$R3 1348
4 TraesCS2D01G498800 chr2D 593918179 593919587 1408 True 1306.000000 1306 84.325000 825 2173 1 chr2D.!!$R4 1348
5 TraesCS2D01G498800 chr2A 728648781 728650143 1362 False 1310.000000 1310 84.670000 825 2164 1 chr2A.!!$F1 1339
6 TraesCS2D01G498800 chr2A 728751462 728753642 2180 True 1015.166667 2662 92.187333 704 2940 3 chr2A.!!$R2 2236
7 TraesCS2D01G498800 chr2A 728617375 728618794 1419 False 754.200000 1426 82.180000 826 2228 2 chr2A.!!$F2 1402
8 TraesCS2D01G498800 chr2A 728727022 728728397 1375 True 687.650000 1304 81.307500 825 2173 2 chr2A.!!$R1 1348
9 TraesCS2D01G498800 chr2B 721109933 721111494 1561 True 2087.000000 2087 91.178000 737 2275 1 chr2B.!!$R2 1538
10 TraesCS2D01G498800 chr2B 720922633 720923852 1219 True 1500.000000 1500 89.032000 826 2046 1 chr2B.!!$R1 1220
11 TraesCS2D01G498800 chr2B 720817300 720818535 1235 False 1164.000000 1164 84.315000 968 2173 1 chr2B.!!$F1 1205

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
675 676 0.105709 CCACCTTGTTCCCCACCTTT 60.106 55.0 0.0 0.0 0.0 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2543 2714 0.514691 CGGCACTTCAAGAAGCTCAC 59.485 55.0 9.62 0.0 41.99 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.737172 GCCACCGCACACCACATC 61.737 66.667 0.00 0.00 34.03 3.06
25 26 2.281414 CCACCGCACACCACATCA 60.281 61.111 0.00 0.00 0.00 3.07
26 27 1.675310 CCACCGCACACCACATCAT 60.675 57.895 0.00 0.00 0.00 2.45
27 28 1.647545 CCACCGCACACCACATCATC 61.648 60.000 0.00 0.00 0.00 2.92
28 29 1.741401 ACCGCACACCACATCATCG 60.741 57.895 0.00 0.00 0.00 3.84
29 30 2.400798 CGCACACCACATCATCGC 59.599 61.111 0.00 0.00 0.00 4.58
30 31 2.793946 GCACACCACATCATCGCC 59.206 61.111 0.00 0.00 0.00 5.54
31 32 3.092403 CACACCACATCATCGCCG 58.908 61.111 0.00 0.00 0.00 6.46
32 33 2.819595 ACACCACATCATCGCCGC 60.820 61.111 0.00 0.00 0.00 6.53
33 34 3.576356 CACCACATCATCGCCGCC 61.576 66.667 0.00 0.00 0.00 6.13
34 35 4.094646 ACCACATCATCGCCGCCA 62.095 61.111 0.00 0.00 0.00 5.69
35 36 3.576356 CCACATCATCGCCGCCAC 61.576 66.667 0.00 0.00 0.00 5.01
36 37 2.819154 CACATCATCGCCGCCACA 60.819 61.111 0.00 0.00 0.00 4.17
37 38 2.819595 ACATCATCGCCGCCACAC 60.820 61.111 0.00 0.00 0.00 3.82
38 39 2.819154 CATCATCGCCGCCACACA 60.819 61.111 0.00 0.00 0.00 3.72
39 40 2.819595 ATCATCGCCGCCACACAC 60.820 61.111 0.00 0.00 0.00 3.82
54 55 4.799473 CACGCGCACGAGGCATTG 62.799 66.667 5.73 0.00 45.17 2.82
57 58 4.183686 GCGCACGAGGCATTGCAT 62.184 61.111 11.39 2.39 45.17 3.96
58 59 2.023741 CGCACGAGGCATTGCATC 59.976 61.111 13.09 13.09 45.17 3.91
59 60 2.410469 GCACGAGGCATTGCATCC 59.590 61.111 16.86 0.30 43.97 3.51
60 61 2.117156 GCACGAGGCATTGCATCCT 61.117 57.895 16.86 3.43 43.97 3.24
61 62 1.725665 CACGAGGCATTGCATCCTG 59.274 57.895 16.86 11.99 35.86 3.86
62 63 2.117156 ACGAGGCATTGCATCCTGC 61.117 57.895 16.86 7.50 45.29 4.85
66 67 2.497770 GCATTGCATCCTGCCACC 59.502 61.111 3.15 0.00 44.23 4.61
67 68 2.056223 GCATTGCATCCTGCCACCT 61.056 57.895 3.15 0.00 44.23 4.00
68 69 2.012902 GCATTGCATCCTGCCACCTC 62.013 60.000 3.15 0.00 44.23 3.85
69 70 1.452651 ATTGCATCCTGCCACCTCG 60.453 57.895 0.00 0.00 44.23 4.63
70 71 4.783621 TGCATCCTGCCACCTCGC 62.784 66.667 0.00 0.00 44.23 5.03
89 90 4.785453 CCAGCCGGAGAGTTGCCC 62.785 72.222 5.05 0.00 0.00 5.36
90 91 3.710722 CAGCCGGAGAGTTGCCCT 61.711 66.667 5.05 0.00 0.00 5.19
91 92 3.710722 AGCCGGAGAGTTGCCCTG 61.711 66.667 5.05 0.00 0.00 4.45
93 94 4.785453 CCGGAGAGTTGCCCTGCC 62.785 72.222 0.00 0.00 0.00 4.85
131 132 4.838486 GCGGTGGCGAGACGAGAG 62.838 72.222 0.00 0.00 0.00 3.20
132 133 3.125573 CGGTGGCGAGACGAGAGA 61.126 66.667 0.00 0.00 0.00 3.10
133 134 2.795297 GGTGGCGAGACGAGAGAG 59.205 66.667 0.00 0.00 0.00 3.20
134 135 2.766400 GGTGGCGAGACGAGAGAGG 61.766 68.421 0.00 0.00 0.00 3.69
135 136 2.438614 TGGCGAGACGAGAGAGGG 60.439 66.667 0.00 0.00 0.00 4.30
136 137 3.213402 GGCGAGACGAGAGAGGGG 61.213 72.222 0.00 0.00 0.00 4.79
137 138 3.894947 GCGAGACGAGAGAGGGGC 61.895 72.222 0.00 0.00 0.00 5.80
138 139 2.124487 CGAGACGAGAGAGGGGCT 60.124 66.667 0.00 0.00 0.00 5.19
139 140 2.477176 CGAGACGAGAGAGGGGCTG 61.477 68.421 0.00 0.00 0.00 4.85
140 141 1.379309 GAGACGAGAGAGGGGCTGT 60.379 63.158 0.00 0.00 0.00 4.40
141 142 1.662438 GAGACGAGAGAGGGGCTGTG 61.662 65.000 0.00 0.00 0.00 3.66
142 143 2.681778 ACGAGAGAGGGGCTGTGG 60.682 66.667 0.00 0.00 0.00 4.17
143 144 2.363018 CGAGAGAGGGGCTGTGGA 60.363 66.667 0.00 0.00 0.00 4.02
144 145 1.984570 CGAGAGAGGGGCTGTGGAA 60.985 63.158 0.00 0.00 0.00 3.53
145 146 1.904032 GAGAGAGGGGCTGTGGAAG 59.096 63.158 0.00 0.00 0.00 3.46
146 147 1.614824 AGAGAGGGGCTGTGGAAGG 60.615 63.158 0.00 0.00 0.00 3.46
147 148 1.613630 GAGAGGGGCTGTGGAAGGA 60.614 63.158 0.00 0.00 0.00 3.36
148 149 1.614824 AGAGGGGCTGTGGAAGGAG 60.615 63.158 0.00 0.00 0.00 3.69
149 150 2.612115 AGGGGCTGTGGAAGGAGG 60.612 66.667 0.00 0.00 0.00 4.30
150 151 4.432741 GGGGCTGTGGAAGGAGGC 62.433 72.222 0.00 0.00 0.00 4.70
151 152 4.785453 GGGCTGTGGAAGGAGGCG 62.785 72.222 0.00 0.00 35.63 5.52
152 153 4.785453 GGCTGTGGAAGGAGGCGG 62.785 72.222 0.00 0.00 0.00 6.13
158 159 4.893601 GGAAGGAGGCGGCGCTAC 62.894 72.222 32.30 23.61 0.00 3.58
163 164 3.116531 GAGGCGGCGCTACGTTTT 61.117 61.111 32.30 8.53 35.98 2.43
164 165 2.667199 AGGCGGCGCTACGTTTTT 60.667 55.556 32.30 4.48 35.98 1.94
165 166 2.202260 GGCGGCGCTACGTTTTTC 60.202 61.111 32.30 7.60 35.98 2.29
166 167 2.569812 GCGGCGCTACGTTTTTCG 60.570 61.111 26.86 0.00 46.00 3.46
167 168 2.569812 CGGCGCTACGTTTTTCGC 60.570 61.111 7.64 12.67 45.99 4.70
169 170 2.202260 GCGCTACGTTTTTCGCCC 60.202 61.111 0.00 0.00 44.19 6.13
170 171 2.477396 CGCTACGTTTTTCGCCCC 59.523 61.111 0.00 0.00 44.19 5.80
171 172 2.872557 GCTACGTTTTTCGCCCCC 59.127 61.111 0.00 0.00 44.19 5.40
172 173 3.030763 GCTACGTTTTTCGCCCCCG 62.031 63.158 0.00 0.00 44.19 5.73
173 174 1.374505 CTACGTTTTTCGCCCCCGA 60.375 57.895 0.00 0.00 44.19 5.14
174 175 1.356527 CTACGTTTTTCGCCCCCGAG 61.357 60.000 0.00 0.00 45.35 4.63
175 176 2.098426 TACGTTTTTCGCCCCCGAGT 62.098 55.000 0.00 0.00 45.35 4.18
522 523 9.853555 TTTATAAATAAAAGACGAGTACGTGGA 57.146 29.630 0.00 0.00 39.70 4.02
530 531 0.914551 CGAGTACGTGGAATTGCTCG 59.085 55.000 18.03 18.03 39.50 5.03
531 532 1.466866 CGAGTACGTGGAATTGCTCGA 60.467 52.381 24.88 8.51 45.69 4.04
532 533 2.602878 GAGTACGTGGAATTGCTCGAA 58.397 47.619 24.88 0.00 0.00 3.71
533 534 2.334838 AGTACGTGGAATTGCTCGAAC 58.665 47.619 24.88 6.68 0.00 3.95
534 535 1.392510 GTACGTGGAATTGCTCGAACC 59.607 52.381 24.88 10.16 0.00 3.62
535 536 0.953960 ACGTGGAATTGCTCGAACCC 60.954 55.000 24.88 0.00 0.00 4.11
536 537 1.644786 CGTGGAATTGCTCGAACCCC 61.645 60.000 15.16 0.00 0.00 4.95
537 538 0.608035 GTGGAATTGCTCGAACCCCA 60.608 55.000 0.00 0.00 0.00 4.96
538 539 0.322456 TGGAATTGCTCGAACCCCAG 60.322 55.000 0.00 0.00 0.00 4.45
539 540 1.657751 GGAATTGCTCGAACCCCAGC 61.658 60.000 0.00 0.00 36.08 4.85
540 541 1.657751 GAATTGCTCGAACCCCAGCC 61.658 60.000 0.00 0.00 34.47 4.85
541 542 3.645268 ATTGCTCGAACCCCAGCCC 62.645 63.158 0.00 0.00 34.47 5.19
557 558 3.854669 CCCGCCGAGAGCAGGATT 61.855 66.667 0.00 0.00 42.21 3.01
558 559 2.279784 CCGCCGAGAGCAGGATTC 60.280 66.667 0.00 0.00 44.04 2.52
559 560 2.496341 CGCCGAGAGCAGGATTCA 59.504 61.111 0.00 0.00 44.04 2.57
560 561 1.591059 CGCCGAGAGCAGGATTCAG 60.591 63.158 0.00 0.00 44.04 3.02
561 562 1.519719 GCCGAGAGCAGGATTCAGT 59.480 57.895 0.00 0.00 42.97 3.41
562 563 0.107945 GCCGAGAGCAGGATTCAGTT 60.108 55.000 0.00 0.00 42.97 3.16
563 564 1.933247 CCGAGAGCAGGATTCAGTTC 58.067 55.000 0.00 0.00 0.00 3.01
564 565 1.205655 CCGAGAGCAGGATTCAGTTCA 59.794 52.381 0.00 0.00 0.00 3.18
565 566 2.538437 CGAGAGCAGGATTCAGTTCAG 58.462 52.381 0.00 0.00 0.00 3.02
566 567 2.738000 CGAGAGCAGGATTCAGTTCAGG 60.738 54.545 0.00 0.00 0.00 3.86
567 568 2.499289 GAGAGCAGGATTCAGTTCAGGA 59.501 50.000 0.00 0.00 0.00 3.86
568 569 2.909006 AGAGCAGGATTCAGTTCAGGAA 59.091 45.455 0.00 0.00 0.00 3.36
569 570 3.522750 AGAGCAGGATTCAGTTCAGGAAT 59.477 43.478 0.00 0.00 37.67 3.01
570 571 4.018597 AGAGCAGGATTCAGTTCAGGAATT 60.019 41.667 0.00 0.00 35.23 2.17
571 572 4.268359 AGCAGGATTCAGTTCAGGAATTC 58.732 43.478 0.00 0.00 35.23 2.17
572 573 4.018597 AGCAGGATTCAGTTCAGGAATTCT 60.019 41.667 5.23 0.00 40.44 2.40
573 574 4.704057 GCAGGATTCAGTTCAGGAATTCTT 59.296 41.667 5.23 0.00 38.29 2.52
574 575 5.163673 GCAGGATTCAGTTCAGGAATTCTTC 60.164 44.000 5.23 0.00 38.29 2.87
575 576 5.942236 CAGGATTCAGTTCAGGAATTCTTCA 59.058 40.000 5.23 0.00 38.29 3.02
576 577 6.093771 CAGGATTCAGTTCAGGAATTCTTCAG 59.906 42.308 5.23 0.00 38.29 3.02
577 578 6.013032 AGGATTCAGTTCAGGAATTCTTCAGA 60.013 38.462 5.23 0.00 37.30 3.27
578 579 6.656693 GGATTCAGTTCAGGAATTCTTCAGAA 59.343 38.462 5.23 2.39 35.23 3.02
579 580 7.338957 GGATTCAGTTCAGGAATTCTTCAGAAT 59.661 37.037 5.23 6.56 45.91 2.40
594 595 8.924511 TTCTTCAGAATTCAGTTTATGACCTT 57.075 30.769 8.44 0.00 37.77 3.50
595 596 8.924511 TCTTCAGAATTCAGTTTATGACCTTT 57.075 30.769 8.44 0.00 37.77 3.11
596 597 9.354673 TCTTCAGAATTCAGTTTATGACCTTTT 57.645 29.630 8.44 0.00 37.77 2.27
597 598 9.617975 CTTCAGAATTCAGTTTATGACCTTTTC 57.382 33.333 8.44 0.00 37.77 2.29
598 599 8.110860 TCAGAATTCAGTTTATGACCTTTTCC 57.889 34.615 8.44 0.00 37.77 3.13
599 600 7.023575 CAGAATTCAGTTTATGACCTTTTCCG 58.976 38.462 8.44 0.00 37.77 4.30
600 601 6.940298 AGAATTCAGTTTATGACCTTTTCCGA 59.060 34.615 8.44 0.00 37.77 4.55
601 602 7.611855 AGAATTCAGTTTATGACCTTTTCCGAT 59.388 33.333 8.44 0.00 37.77 4.18
602 603 6.737254 TTCAGTTTATGACCTTTTCCGATC 57.263 37.500 0.00 0.00 37.77 3.69
603 604 5.800296 TCAGTTTATGACCTTTTCCGATCA 58.200 37.500 0.00 0.00 31.12 2.92
604 605 6.414732 TCAGTTTATGACCTTTTCCGATCAT 58.585 36.000 0.00 0.00 35.91 2.45
605 606 7.561251 TCAGTTTATGACCTTTTCCGATCATA 58.439 34.615 0.00 0.00 33.84 2.15
606 607 7.494625 TCAGTTTATGACCTTTTCCGATCATAC 59.505 37.037 0.00 0.00 34.56 2.39
607 608 6.766467 AGTTTATGACCTTTTCCGATCATACC 59.234 38.462 0.00 0.00 34.56 2.73
608 609 6.494666 TTATGACCTTTTCCGATCATACCT 57.505 37.500 0.00 0.00 34.56 3.08
609 610 4.837093 TGACCTTTTCCGATCATACCTT 57.163 40.909 0.00 0.00 0.00 3.50
610 611 4.513442 TGACCTTTTCCGATCATACCTTG 58.487 43.478 0.00 0.00 0.00 3.61
611 612 3.877508 GACCTTTTCCGATCATACCTTGG 59.122 47.826 0.00 0.00 0.00 3.61
612 613 3.265995 ACCTTTTCCGATCATACCTTGGT 59.734 43.478 0.00 0.00 0.00 3.67
613 614 4.263771 ACCTTTTCCGATCATACCTTGGTT 60.264 41.667 0.00 0.00 0.00 3.67
614 615 4.705023 CCTTTTCCGATCATACCTTGGTTT 59.295 41.667 0.00 0.00 0.00 3.27
615 616 5.393027 CCTTTTCCGATCATACCTTGGTTTG 60.393 44.000 0.00 0.48 0.00 2.93
616 617 3.275617 TCCGATCATACCTTGGTTTGG 57.724 47.619 9.68 0.85 0.00 3.28
617 618 2.574369 TCCGATCATACCTTGGTTTGGT 59.426 45.455 9.68 3.43 41.28 3.67
618 619 3.775866 TCCGATCATACCTTGGTTTGGTA 59.224 43.478 9.68 0.00 43.28 3.25
619 620 3.875134 CCGATCATACCTTGGTTTGGTAC 59.125 47.826 9.68 0.00 42.12 3.34
627 628 3.676216 GGTTTGGTACCGCTTGGG 58.324 61.111 7.57 0.00 37.12 4.12
628 629 1.974875 GGTTTGGTACCGCTTGGGG 60.975 63.158 7.57 1.99 41.60 4.96
629 630 2.282603 TTTGGTACCGCTTGGGGC 60.283 61.111 7.57 0.00 41.60 5.80
630 631 2.836187 TTTGGTACCGCTTGGGGCT 61.836 57.895 7.57 0.00 41.60 5.19
631 632 3.561120 TTGGTACCGCTTGGGGCTG 62.561 63.158 7.57 0.00 41.60 4.85
632 633 3.712907 GGTACCGCTTGGGGCTGA 61.713 66.667 0.00 0.00 41.60 4.26
633 634 2.349755 GTACCGCTTGGGGCTGAA 59.650 61.111 3.51 0.00 41.60 3.02
634 635 1.745489 GTACCGCTTGGGGCTGAAG 60.745 63.158 3.51 0.00 41.60 3.02
635 636 1.916273 TACCGCTTGGGGCTGAAGA 60.916 57.895 3.51 0.00 41.60 2.87
636 637 1.485294 TACCGCTTGGGGCTGAAGAA 61.485 55.000 3.51 0.00 41.60 2.52
637 638 2.042831 CCGCTTGGGGCTGAAGAAG 61.043 63.158 0.95 0.00 39.13 2.85
647 648 3.461843 CTGAAGAAGCAAACACGCC 57.538 52.632 0.00 0.00 0.00 5.68
648 649 0.662619 CTGAAGAAGCAAACACGCCA 59.337 50.000 0.00 0.00 0.00 5.69
649 650 0.380378 TGAAGAAGCAAACACGCCAC 59.620 50.000 0.00 0.00 0.00 5.01
650 651 0.657368 GAAGAAGCAAACACGCCACG 60.657 55.000 0.00 0.00 0.00 4.94
651 652 2.662091 AAGAAGCAAACACGCCACGC 62.662 55.000 0.00 0.00 0.00 5.34
665 666 4.868116 ACGCGGCACCACCTTGTT 62.868 61.111 12.47 0.00 35.61 2.83
666 667 4.025401 CGCGGCACCACCTTGTTC 62.025 66.667 0.00 0.00 35.61 3.18
667 668 3.670377 GCGGCACCACCTTGTTCC 61.670 66.667 0.00 0.00 35.61 3.62
668 669 2.983592 CGGCACCACCTTGTTCCC 60.984 66.667 0.00 0.00 35.61 3.97
669 670 2.600470 GGCACCACCTTGTTCCCC 60.600 66.667 0.00 0.00 34.51 4.81
670 671 2.197324 GCACCACCTTGTTCCCCA 59.803 61.111 0.00 0.00 0.00 4.96
671 672 2.200337 GCACCACCTTGTTCCCCAC 61.200 63.158 0.00 0.00 0.00 4.61
672 673 1.530655 CACCACCTTGTTCCCCACC 60.531 63.158 0.00 0.00 0.00 4.61
673 674 1.699930 ACCACCTTGTTCCCCACCT 60.700 57.895 0.00 0.00 0.00 4.00
674 675 1.293683 ACCACCTTGTTCCCCACCTT 61.294 55.000 0.00 0.00 0.00 3.50
675 676 0.105709 CCACCTTGTTCCCCACCTTT 60.106 55.000 0.00 0.00 0.00 3.11
676 677 1.039856 CACCTTGTTCCCCACCTTTG 58.960 55.000 0.00 0.00 0.00 2.77
677 678 0.759060 ACCTTGTTCCCCACCTTTGC 60.759 55.000 0.00 0.00 0.00 3.68
678 679 0.469892 CCTTGTTCCCCACCTTTGCT 60.470 55.000 0.00 0.00 0.00 3.91
679 680 0.675633 CTTGTTCCCCACCTTTGCTG 59.324 55.000 0.00 0.00 0.00 4.41
680 681 0.260230 TTGTTCCCCACCTTTGCTGA 59.740 50.000 0.00 0.00 0.00 4.26
681 682 0.467290 TGTTCCCCACCTTTGCTGAC 60.467 55.000 0.00 0.00 0.00 3.51
682 683 1.152830 TTCCCCACCTTTGCTGACC 59.847 57.895 0.00 0.00 0.00 4.02
683 684 2.672996 CCCCACCTTTGCTGACCG 60.673 66.667 0.00 0.00 0.00 4.79
684 685 2.672996 CCCACCTTTGCTGACCGG 60.673 66.667 0.00 0.00 0.00 5.28
685 686 2.113139 CCACCTTTGCTGACCGGT 59.887 61.111 6.92 6.92 0.00 5.28
686 687 2.260869 CCACCTTTGCTGACCGGTG 61.261 63.158 14.63 0.00 44.98 4.94
687 688 3.236391 ACCTTTGCTGACCGGTGA 58.764 55.556 14.63 0.65 0.00 4.02
688 689 1.227853 ACCTTTGCTGACCGGTGAC 60.228 57.895 14.63 0.00 0.00 3.67
771 772 2.436417 GAGCACTAACCATGGCAAAGA 58.564 47.619 13.04 0.00 0.00 2.52
772 773 2.421424 GAGCACTAACCATGGCAAAGAG 59.579 50.000 13.04 6.65 0.00 2.85
785 786 2.565841 GCAAAGAGGCGTTCCAGATAT 58.434 47.619 0.00 0.00 33.74 1.63
787 788 3.495001 GCAAAGAGGCGTTCCAGATATAC 59.505 47.826 0.00 0.00 33.74 1.47
788 789 4.693283 CAAAGAGGCGTTCCAGATATACA 58.307 43.478 0.00 0.00 33.74 2.29
789 790 4.592485 AAGAGGCGTTCCAGATATACAG 57.408 45.455 0.00 0.00 33.74 2.74
797 800 4.687948 CGTTCCAGATATACAGGCAATCAG 59.312 45.833 0.00 0.00 0.00 2.90
822 825 9.277783 AGATACTGTATGATAATTGAACAAGCC 57.722 33.333 4.79 0.00 0.00 4.35
823 826 8.978874 ATACTGTATGATAATTGAACAAGCCA 57.021 30.769 0.00 0.00 0.00 4.75
857 864 6.451393 AGAGAGAATAATAAGACATGACGCC 58.549 40.000 0.00 0.00 0.00 5.68
926 938 2.884639 CCTTTGACCGGAAACAATGAGT 59.115 45.455 9.46 0.00 0.00 3.41
932 944 4.202274 TGACCGGAAACAATGAGTACAGAA 60.202 41.667 9.46 0.00 0.00 3.02
961 980 1.792115 AATGCAGAGAGGAGCTAGCT 58.208 50.000 19.45 19.45 0.00 3.32
962 981 1.042229 ATGCAGAGAGGAGCTAGCTG 58.958 55.000 24.99 7.82 0.00 4.24
963 982 1.067916 GCAGAGAGGAGCTAGCTGC 59.932 63.158 27.23 27.23 44.11 5.25
1137 1199 1.002134 CAGTGCCAGTTTCCGGGAT 60.002 57.895 0.00 0.00 0.00 3.85
1360 1425 7.833183 TCTCTATCCTATCGTCCTTAATTACCC 59.167 40.741 0.00 0.00 0.00 3.69
1367 1445 7.817962 CCTATCGTCCTTAATTACCCATACTTG 59.182 40.741 0.00 0.00 0.00 3.16
1381 1459 4.487948 CCATACTTGCCAATGAGTTTGTG 58.512 43.478 0.00 0.00 33.15 3.33
1430 1530 6.031471 CGATTGATTGCAAATTCAGACATCA 58.969 36.000 1.71 0.00 37.59 3.07
1806 1906 2.494445 CCAGCTACCGCGACATGA 59.506 61.111 8.23 0.00 42.32 3.07
2073 2195 1.873486 GCACCAAGGAACAATGGTTGC 60.873 52.381 0.00 0.00 46.26 4.17
2130 2262 7.206789 TGATTGGACTGGGACTTCATTTATA 57.793 36.000 0.00 0.00 0.00 0.98
2131 2263 7.282585 TGATTGGACTGGGACTTCATTTATAG 58.717 38.462 0.00 0.00 0.00 1.31
2219 2379 6.291648 ACAGCTCCATCATATACCTATGTG 57.708 41.667 0.00 0.00 36.80 3.21
2221 2381 6.270927 ACAGCTCCATCATATACCTATGTGTT 59.729 38.462 0.00 0.00 36.80 3.32
2281 2441 4.588899 TGGATGAGTTTTATGTGACCCAG 58.411 43.478 0.00 0.00 0.00 4.45
2329 2489 2.092753 AGTGAATGGCATCTGGTCGAAT 60.093 45.455 0.00 0.00 0.00 3.34
2343 2503 2.599677 GTCGAATACCTCAGGGGAGAT 58.400 52.381 0.00 0.00 44.26 2.75
2344 2504 3.499926 GGTCGAATACCTCAGGGGAGATA 60.500 52.174 0.00 0.00 45.75 1.98
2347 2507 3.895656 CGAATACCTCAGGGGAGATAACA 59.104 47.826 0.00 0.00 44.26 2.41
2356 2516 3.203040 CAGGGGAGATAACATTCAACCCT 59.797 47.826 0.00 0.00 41.90 4.34
2386 2557 0.798776 CAATGAGCGTCTTGGTGACC 59.201 55.000 0.00 0.00 42.49 4.02
2409 2580 0.486879 ATGTTGTGAATGGTGGGGGT 59.513 50.000 0.00 0.00 0.00 4.95
2424 2595 4.857251 GGTGACCATGATCGGGAC 57.143 61.111 9.99 4.73 0.00 4.46
2448 2619 2.048222 CACGGCTTTCGCTCTGGA 60.048 61.111 0.00 0.00 43.89 3.86
2467 2638 4.612412 GGGTGGTCGCCAACGTCA 62.612 66.667 7.66 0.00 43.24 4.35
2475 2646 0.816018 TCGCCAACGTCAAACACCAT 60.816 50.000 0.00 0.00 41.18 3.55
2478 2649 1.867698 GCCAACGTCAAACACCATTGG 60.868 52.381 0.00 0.00 39.40 3.16
2496 2667 1.630369 TGGGACTTTGGACCATCTCAG 59.370 52.381 0.00 0.00 0.00 3.35
2508 2679 0.695803 CATCTCAGGGGCTTAGGGGT 60.696 60.000 0.00 0.00 0.00 4.95
2543 2714 2.824041 CCGCATTGACTTCCCGGG 60.824 66.667 16.85 16.85 35.54 5.73
2550 2721 1.415672 TTGACTTCCCGGGTGAGCTT 61.416 55.000 22.86 4.94 0.00 3.74
2560 2731 0.877743 GGGTGAGCTTCTTGAAGTGC 59.122 55.000 11.41 5.19 0.00 4.40
2570 2741 3.401033 TCTTGAAGTGCCGATTTGAGA 57.599 42.857 0.00 0.00 0.00 3.27
2572 2743 2.839486 TGAAGTGCCGATTTGAGAGT 57.161 45.000 0.00 0.00 0.00 3.24
2581 2752 1.812571 CGATTTGAGAGTGGGGTTTGG 59.187 52.381 0.00 0.00 0.00 3.28
2582 2753 2.171003 GATTTGAGAGTGGGGTTTGGG 58.829 52.381 0.00 0.00 0.00 4.12
2597 2768 4.244098 GGGCCCCCATGGATGCAT 62.244 66.667 15.22 0.00 35.39 3.96
2599 2770 2.123164 GCCCCCATGGATGCATGT 60.123 61.111 23.60 0.00 35.39 3.21
2606 2777 3.025978 CCCATGGATGCATGTTACAACT 58.974 45.455 23.60 0.00 0.00 3.16
2609 2780 4.201980 CCATGGATGCATGTTACAACTCTG 60.202 45.833 23.60 2.86 0.00 3.35
2641 2812 3.003173 TCCGCCTCCCTCCTTGTG 61.003 66.667 0.00 0.00 0.00 3.33
2642 2813 3.003173 CCGCCTCCCTCCTTGTGA 61.003 66.667 0.00 0.00 0.00 3.58
2648 2819 1.551099 CCTCCCTCCTTGTGAGAGTCA 60.551 57.143 0.00 0.00 44.42 3.41
2650 2821 2.634940 CTCCCTCCTTGTGAGAGTCAAA 59.365 50.000 0.00 0.00 44.42 2.69
2653 2824 2.038295 CCTCCTTGTGAGAGTCAAAGCT 59.962 50.000 0.00 0.00 44.42 3.74
2691 2862 0.653636 GTTTGCTTTGTCGTGGTCGA 59.346 50.000 0.00 0.00 44.12 4.20
2697 2868 1.812686 TTTGTCGTGGTCGAGAGGGG 61.813 60.000 0.00 0.00 46.96 4.79
2698 2869 3.450115 GTCGTGGTCGAGAGGGGG 61.450 72.222 0.00 0.00 46.96 5.40
2699 2870 3.654143 TCGTGGTCGAGAGGGGGA 61.654 66.667 0.00 0.00 41.35 4.81
2700 2871 3.450115 CGTGGTCGAGAGGGGGAC 61.450 72.222 0.00 0.00 39.71 4.46
2701 2872 3.450115 GTGGTCGAGAGGGGGACG 61.450 72.222 0.00 0.00 33.99 4.79
2702 2873 4.753662 TGGTCGAGAGGGGGACGG 62.754 72.222 0.00 0.00 33.99 4.79
2703 2874 4.755507 GGTCGAGAGGGGGACGGT 62.756 72.222 0.00 0.00 33.99 4.83
2704 2875 2.679287 GTCGAGAGGGGGACGGTT 60.679 66.667 0.00 0.00 0.00 4.44
2765 2936 3.049344 ACCACCTTCCTTCTTGTCTTCT 58.951 45.455 0.00 0.00 0.00 2.85
2766 2937 4.232091 ACCACCTTCCTTCTTGTCTTCTA 58.768 43.478 0.00 0.00 0.00 2.10
2767 2938 4.846940 ACCACCTTCCTTCTTGTCTTCTAT 59.153 41.667 0.00 0.00 0.00 1.98
2770 2941 3.868077 CCTTCCTTCTTGTCTTCTATGCG 59.132 47.826 0.00 0.00 0.00 4.73
2780 2951 5.134202 TGTCTTCTATGCGTCTCTTTTCA 57.866 39.130 0.00 0.00 0.00 2.69
2794 2965 2.631062 TCTTTTCACGCCACTCCTTCTA 59.369 45.455 0.00 0.00 0.00 2.10
2803 2974 0.741915 CACTCCTTCTAGCGGTCCTC 59.258 60.000 0.00 0.00 0.00 3.71
2824 2995 0.657312 CGCAGCTGTTTGACTTCACA 59.343 50.000 16.64 0.00 0.00 3.58
2826 2997 1.672881 GCAGCTGTTTGACTTCACAGT 59.327 47.619 16.64 0.00 42.19 3.55
2834 3005 1.617322 TGACTTCACAGTAGTCGGCT 58.383 50.000 0.00 0.00 43.90 5.52
2835 3006 1.269723 TGACTTCACAGTAGTCGGCTG 59.730 52.381 0.00 0.00 43.90 4.85
2843 3014 0.605860 AGTAGTCGGCTGTCTCGTGT 60.606 55.000 0.00 0.00 0.00 4.49
2844 3015 0.454620 GTAGTCGGCTGTCTCGTGTG 60.455 60.000 0.00 0.00 0.00 3.82
2852 3023 4.046998 GTCTCGTGTGTGTGCGCG 62.047 66.667 0.00 0.00 42.91 6.86
2856 3027 4.664864 CGTGTGTGTGCGCGCAAT 62.665 61.111 38.24 0.00 36.82 3.56
2857 3028 2.553770 GTGTGTGTGCGCGCAATA 59.446 55.556 38.24 25.21 36.82 1.90
2858 3029 1.082431 GTGTGTGTGCGCGCAATAA 60.082 52.632 38.24 21.92 36.82 1.40
2859 3030 1.059657 GTGTGTGTGCGCGCAATAAG 61.060 55.000 38.24 0.00 36.82 1.73
2860 3031 1.511887 GTGTGTGCGCGCAATAAGG 60.512 57.895 38.24 0.00 36.82 2.69
2861 3032 2.576847 GTGTGCGCGCAATAAGGC 60.577 61.111 38.24 22.78 0.00 4.35
2862 3033 2.745884 TGTGCGCGCAATAAGGCT 60.746 55.556 38.24 0.00 0.00 4.58
2868 3039 2.278142 CGCAATAAGGCTTGCCGC 60.278 61.111 10.69 8.19 46.98 6.53
2902 3073 1.821136 GGACATGCCCTCCTTCTTTTG 59.179 52.381 0.00 0.00 0.00 2.44
2916 3087 2.653726 TCTTTTGCTGCTTCCACTCAA 58.346 42.857 0.00 0.00 0.00 3.02
2943 3114 3.136123 CGAGGACCGCCGGAAGTA 61.136 66.667 11.71 0.00 39.96 2.24
2944 3115 2.806237 GAGGACCGCCGGAAGTAG 59.194 66.667 11.71 0.00 39.96 2.57
2945 3116 1.751927 GAGGACCGCCGGAAGTAGA 60.752 63.158 11.71 0.00 39.96 2.59
2946 3117 1.304713 AGGACCGCCGGAAGTAGAA 60.305 57.895 11.71 0.00 39.96 2.10
2947 3118 0.686769 AGGACCGCCGGAAGTAGAAT 60.687 55.000 11.71 0.00 39.96 2.40
2948 3119 0.529992 GGACCGCCGGAAGTAGAATG 60.530 60.000 11.71 0.00 0.00 2.67
2949 3120 0.458669 GACCGCCGGAAGTAGAATGA 59.541 55.000 11.71 0.00 0.00 2.57
2950 3121 1.068741 GACCGCCGGAAGTAGAATGAT 59.931 52.381 11.71 0.00 0.00 2.45
2951 3122 1.068741 ACCGCCGGAAGTAGAATGATC 59.931 52.381 11.71 0.00 0.00 2.92
2952 3123 1.068588 CCGCCGGAAGTAGAATGATCA 59.931 52.381 5.05 0.00 0.00 2.92
2953 3124 2.483013 CCGCCGGAAGTAGAATGATCAA 60.483 50.000 5.05 0.00 0.00 2.57
2954 3125 3.393800 CGCCGGAAGTAGAATGATCAAT 58.606 45.455 5.05 0.00 0.00 2.57
2955 3126 3.809832 CGCCGGAAGTAGAATGATCAATT 59.190 43.478 5.05 0.00 0.00 2.32
2956 3127 4.319046 CGCCGGAAGTAGAATGATCAATTG 60.319 45.833 5.05 0.00 0.00 2.32
2957 3128 4.576463 GCCGGAAGTAGAATGATCAATTGT 59.424 41.667 5.05 0.00 0.00 2.71
2958 3129 5.277538 GCCGGAAGTAGAATGATCAATTGTC 60.278 44.000 5.05 3.42 0.00 3.18
2959 3130 6.051717 CCGGAAGTAGAATGATCAATTGTCT 58.948 40.000 5.13 3.12 0.00 3.41
2960 3131 6.201806 CCGGAAGTAGAATGATCAATTGTCTC 59.798 42.308 5.13 4.74 0.00 3.36
2961 3132 6.983307 CGGAAGTAGAATGATCAATTGTCTCT 59.017 38.462 5.13 5.48 0.00 3.10
2962 3133 7.042858 CGGAAGTAGAATGATCAATTGTCTCTG 60.043 40.741 5.13 0.00 0.00 3.35
2963 3134 7.768120 GGAAGTAGAATGATCAATTGTCTCTGT 59.232 37.037 5.13 0.00 0.00 3.41
2964 3135 8.489990 AAGTAGAATGATCAATTGTCTCTGTG 57.510 34.615 5.13 0.00 0.00 3.66
2965 3136 5.814764 AGAATGATCAATTGTCTCTGTGC 57.185 39.130 5.13 0.00 0.00 4.57
2966 3137 5.250982 AGAATGATCAATTGTCTCTGTGCA 58.749 37.500 5.13 0.00 0.00 4.57
2967 3138 5.886474 AGAATGATCAATTGTCTCTGTGCAT 59.114 36.000 5.13 0.00 0.00 3.96
2968 3139 6.377429 AGAATGATCAATTGTCTCTGTGCATT 59.623 34.615 5.13 5.28 0.00 3.56
2969 3140 5.556355 TGATCAATTGTCTCTGTGCATTC 57.444 39.130 5.13 0.00 0.00 2.67
2970 3141 5.005094 TGATCAATTGTCTCTGTGCATTCA 58.995 37.500 5.13 0.00 0.00 2.57
2971 3142 5.650703 TGATCAATTGTCTCTGTGCATTCAT 59.349 36.000 5.13 0.00 0.00 2.57
2972 3143 5.970317 TCAATTGTCTCTGTGCATTCATT 57.030 34.783 5.13 0.00 0.00 2.57
2973 3144 5.946298 TCAATTGTCTCTGTGCATTCATTC 58.054 37.500 5.13 0.00 0.00 2.67
2974 3145 5.474189 TCAATTGTCTCTGTGCATTCATTCA 59.526 36.000 5.13 0.00 0.00 2.57
2975 3146 4.754372 TTGTCTCTGTGCATTCATTCAC 57.246 40.909 0.00 0.00 0.00 3.18
2976 3147 3.076621 TGTCTCTGTGCATTCATTCACC 58.923 45.455 0.00 0.00 32.51 4.02
2977 3148 2.421424 GTCTCTGTGCATTCATTCACCC 59.579 50.000 0.00 0.00 32.51 4.61
2978 3149 2.040145 TCTCTGTGCATTCATTCACCCA 59.960 45.455 0.00 0.00 32.51 4.51
2979 3150 2.161855 TCTGTGCATTCATTCACCCAC 58.838 47.619 0.00 0.00 32.51 4.61
2980 3151 1.887854 CTGTGCATTCATTCACCCACA 59.112 47.619 0.00 0.00 32.51 4.17
2981 3152 1.612950 TGTGCATTCATTCACCCACAC 59.387 47.619 0.00 0.00 32.51 3.82
2982 3153 1.067635 GTGCATTCATTCACCCACACC 60.068 52.381 0.00 0.00 0.00 4.16
2983 3154 0.171007 GCATTCATTCACCCACACCG 59.829 55.000 0.00 0.00 0.00 4.94
2984 3155 1.819928 CATTCATTCACCCACACCGA 58.180 50.000 0.00 0.00 0.00 4.69
2985 3156 1.739466 CATTCATTCACCCACACCGAG 59.261 52.381 0.00 0.00 0.00 4.63
2986 3157 0.762418 TTCATTCACCCACACCGAGT 59.238 50.000 0.00 0.00 0.00 4.18
2987 3158 1.634960 TCATTCACCCACACCGAGTA 58.365 50.000 0.00 0.00 0.00 2.59
2988 3159 1.274167 TCATTCACCCACACCGAGTAC 59.726 52.381 0.00 0.00 0.00 2.73
2989 3160 1.001520 CATTCACCCACACCGAGTACA 59.998 52.381 0.00 0.00 0.00 2.90
2990 3161 1.121378 TTCACCCACACCGAGTACAA 58.879 50.000 0.00 0.00 0.00 2.41
2991 3162 0.677288 TCACCCACACCGAGTACAAG 59.323 55.000 0.00 0.00 0.00 3.16
2992 3163 0.677288 CACCCACACCGAGTACAAGA 59.323 55.000 0.00 0.00 0.00 3.02
2993 3164 1.275291 CACCCACACCGAGTACAAGAT 59.725 52.381 0.00 0.00 0.00 2.40
2994 3165 2.494471 CACCCACACCGAGTACAAGATA 59.506 50.000 0.00 0.00 0.00 1.98
2995 3166 2.494870 ACCCACACCGAGTACAAGATAC 59.505 50.000 0.00 0.00 0.00 2.24
2996 3167 2.494471 CCCACACCGAGTACAAGATACA 59.506 50.000 0.00 0.00 0.00 2.29
2997 3168 3.508762 CCACACCGAGTACAAGATACAC 58.491 50.000 0.00 0.00 0.00 2.90
2998 3169 3.057104 CCACACCGAGTACAAGATACACA 60.057 47.826 0.00 0.00 0.00 3.72
2999 3170 3.918591 CACACCGAGTACAAGATACACAC 59.081 47.826 0.00 0.00 0.00 3.82
3000 3171 3.570975 ACACCGAGTACAAGATACACACA 59.429 43.478 0.00 0.00 0.00 3.72
3001 3172 3.918591 CACCGAGTACAAGATACACACAC 59.081 47.826 0.00 0.00 0.00 3.82
3002 3173 3.570975 ACCGAGTACAAGATACACACACA 59.429 43.478 0.00 0.00 0.00 3.72
3003 3174 3.918591 CCGAGTACAAGATACACACACAC 59.081 47.826 0.00 0.00 0.00 3.82
3004 3175 4.321008 CCGAGTACAAGATACACACACACT 60.321 45.833 0.00 0.00 0.00 3.55
3005 3176 4.617223 CGAGTACAAGATACACACACACTG 59.383 45.833 0.00 0.00 0.00 3.66
3006 3177 4.883083 AGTACAAGATACACACACACTGG 58.117 43.478 0.00 0.00 0.00 4.00
3007 3178 4.587262 AGTACAAGATACACACACACTGGA 59.413 41.667 0.00 0.00 0.00 3.86
3008 3179 3.995199 ACAAGATACACACACACTGGAG 58.005 45.455 0.00 0.00 0.00 3.86
3009 3180 2.738846 CAAGATACACACACACTGGAGC 59.261 50.000 0.00 0.00 0.00 4.70
3010 3181 1.067565 AGATACACACACACTGGAGCG 60.068 52.381 0.00 0.00 0.00 5.03
3011 3182 0.037326 ATACACACACACTGGAGCGG 60.037 55.000 0.00 0.00 0.00 5.52
3012 3183 1.396607 TACACACACACTGGAGCGGT 61.397 55.000 0.00 0.00 0.00 5.68
3013 3184 1.523711 CACACACACTGGAGCGGTT 60.524 57.895 0.00 0.00 0.00 4.44
3014 3185 0.249699 CACACACACTGGAGCGGTTA 60.250 55.000 0.00 0.00 0.00 2.85
3015 3186 0.249741 ACACACACTGGAGCGGTTAC 60.250 55.000 0.00 0.00 0.00 2.50
3016 3187 0.249699 CACACACTGGAGCGGTTACA 60.250 55.000 0.00 0.00 0.00 2.41
3017 3188 0.466543 ACACACTGGAGCGGTTACAA 59.533 50.000 0.00 0.00 0.00 2.41
3018 3189 1.148310 CACACTGGAGCGGTTACAAG 58.852 55.000 0.00 0.00 0.00 3.16
3019 3190 0.034896 ACACTGGAGCGGTTACAAGG 59.965 55.000 0.00 0.00 0.00 3.61
3020 3191 0.320374 CACTGGAGCGGTTACAAGGA 59.680 55.000 0.00 0.00 0.00 3.36
3021 3192 0.608640 ACTGGAGCGGTTACAAGGAG 59.391 55.000 0.00 0.00 0.00 3.69
3022 3193 0.741221 CTGGAGCGGTTACAAGGAGC 60.741 60.000 0.00 0.00 0.00 4.70
3023 3194 1.449778 GGAGCGGTTACAAGGAGCC 60.450 63.158 0.00 0.00 0.00 4.70
3024 3195 1.449778 GAGCGGTTACAAGGAGCCC 60.450 63.158 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.737172 GATGTGGTGTGCGGTGGC 61.737 66.667 0.00 0.00 40.52 5.01
8 9 1.647545 GATGATGTGGTGTGCGGTGG 61.648 60.000 0.00 0.00 0.00 4.61
9 10 1.796151 GATGATGTGGTGTGCGGTG 59.204 57.895 0.00 0.00 0.00 4.94
10 11 1.741401 CGATGATGTGGTGTGCGGT 60.741 57.895 0.00 0.00 0.00 5.68
11 12 3.092403 CGATGATGTGGTGTGCGG 58.908 61.111 0.00 0.00 0.00 5.69
12 13 2.400798 GCGATGATGTGGTGTGCG 59.599 61.111 0.00 0.00 0.00 5.34
13 14 2.793946 GGCGATGATGTGGTGTGC 59.206 61.111 0.00 0.00 0.00 4.57
14 15 3.092403 CGGCGATGATGTGGTGTG 58.908 61.111 0.00 0.00 0.00 3.82
15 16 2.819595 GCGGCGATGATGTGGTGT 60.820 61.111 12.98 0.00 0.00 4.16
16 17 3.576356 GGCGGCGATGATGTGGTG 61.576 66.667 12.98 0.00 0.00 4.17
17 18 4.094646 TGGCGGCGATGATGTGGT 62.095 61.111 12.98 0.00 0.00 4.16
18 19 3.576356 GTGGCGGCGATGATGTGG 61.576 66.667 12.98 0.00 0.00 4.17
19 20 2.819154 TGTGGCGGCGATGATGTG 60.819 61.111 12.98 0.00 0.00 3.21
20 21 2.819595 GTGTGGCGGCGATGATGT 60.820 61.111 12.98 0.00 0.00 3.06
21 22 2.819154 TGTGTGGCGGCGATGATG 60.819 61.111 12.98 0.00 0.00 3.07
22 23 2.819595 GTGTGTGGCGGCGATGAT 60.820 61.111 12.98 0.00 0.00 2.45
37 38 4.799473 CAATGCCTCGTGCGCGTG 62.799 66.667 20.50 17.27 45.60 5.34
40 41 4.183686 ATGCAATGCCTCGTGCGC 62.184 61.111 1.53 0.00 45.60 6.09
41 42 2.023741 GATGCAATGCCTCGTGCG 59.976 61.111 1.53 0.00 45.60 5.34
42 43 2.117156 AGGATGCAATGCCTCGTGC 61.117 57.895 1.53 0.00 41.29 5.34
43 44 1.725665 CAGGATGCAATGCCTCGTG 59.274 57.895 16.14 16.14 33.77 4.35
44 45 4.230603 CAGGATGCAATGCCTCGT 57.769 55.556 1.53 0.68 33.77 4.18
72 73 4.785453 GGGCAACTCTCCGGCTGG 62.785 72.222 4.71 4.71 0.00 4.85
73 74 3.710722 AGGGCAACTCTCCGGCTG 61.711 66.667 0.00 0.00 0.00 4.85
74 75 3.710722 CAGGGCAACTCTCCGGCT 61.711 66.667 0.00 0.00 0.00 5.52
76 77 4.785453 GGCAGGGCAACTCTCCGG 62.785 72.222 0.00 0.00 0.00 5.14
109 110 4.803426 GTCTCGCCACCGCCAGAG 62.803 72.222 0.00 0.00 0.00 3.35
114 115 4.838486 CTCTCGTCTCGCCACCGC 62.838 72.222 0.00 0.00 0.00 5.68
115 116 3.102107 CTCTCTCGTCTCGCCACCG 62.102 68.421 0.00 0.00 0.00 4.94
116 117 2.766400 CCTCTCTCGTCTCGCCACC 61.766 68.421 0.00 0.00 0.00 4.61
117 118 2.766400 CCCTCTCTCGTCTCGCCAC 61.766 68.421 0.00 0.00 0.00 5.01
118 119 2.438614 CCCTCTCTCGTCTCGCCA 60.439 66.667 0.00 0.00 0.00 5.69
119 120 3.213402 CCCCTCTCTCGTCTCGCC 61.213 72.222 0.00 0.00 0.00 5.54
120 121 3.894947 GCCCCTCTCTCGTCTCGC 61.895 72.222 0.00 0.00 0.00 5.03
121 122 2.124487 AGCCCCTCTCTCGTCTCG 60.124 66.667 0.00 0.00 0.00 4.04
122 123 1.379309 ACAGCCCCTCTCTCGTCTC 60.379 63.158 0.00 0.00 0.00 3.36
123 124 1.680651 CACAGCCCCTCTCTCGTCT 60.681 63.158 0.00 0.00 0.00 4.18
124 125 2.716017 CCACAGCCCCTCTCTCGTC 61.716 68.421 0.00 0.00 0.00 4.20
125 126 2.681778 CCACAGCCCCTCTCTCGT 60.682 66.667 0.00 0.00 0.00 4.18
126 127 1.954362 CTTCCACAGCCCCTCTCTCG 61.954 65.000 0.00 0.00 0.00 4.04
127 128 1.621672 CCTTCCACAGCCCCTCTCTC 61.622 65.000 0.00 0.00 0.00 3.20
128 129 1.614824 CCTTCCACAGCCCCTCTCT 60.615 63.158 0.00 0.00 0.00 3.10
129 130 1.613630 TCCTTCCACAGCCCCTCTC 60.614 63.158 0.00 0.00 0.00 3.20
130 131 1.614824 CTCCTTCCACAGCCCCTCT 60.615 63.158 0.00 0.00 0.00 3.69
131 132 2.674220 CCTCCTTCCACAGCCCCTC 61.674 68.421 0.00 0.00 0.00 4.30
132 133 2.612115 CCTCCTTCCACAGCCCCT 60.612 66.667 0.00 0.00 0.00 4.79
133 134 4.432741 GCCTCCTTCCACAGCCCC 62.433 72.222 0.00 0.00 0.00 5.80
134 135 4.785453 CGCCTCCTTCCACAGCCC 62.785 72.222 0.00 0.00 0.00 5.19
135 136 4.785453 CCGCCTCCTTCCACAGCC 62.785 72.222 0.00 0.00 0.00 4.85
141 142 4.893601 GTAGCGCCGCCTCCTTCC 62.894 72.222 4.98 0.00 0.00 3.46
146 147 2.558717 GAAAAACGTAGCGCCGCCTC 62.559 60.000 4.98 0.00 0.00 4.70
147 148 2.667199 AAAAACGTAGCGCCGCCT 60.667 55.556 4.98 0.00 0.00 5.52
148 149 2.202260 GAAAAACGTAGCGCCGCC 60.202 61.111 4.98 0.00 0.00 6.13
149 150 2.569812 CGAAAAACGTAGCGCCGC 60.570 61.111 2.29 0.00 37.22 6.53
150 151 2.569812 GCGAAAAACGTAGCGCCG 60.570 61.111 2.29 3.59 43.33 6.46
153 154 2.477396 GGGGCGAAAAACGTAGCG 59.523 61.111 0.00 0.00 44.60 4.26
154 155 2.872557 GGGGGCGAAAAACGTAGC 59.127 61.111 0.00 0.00 44.60 3.58
155 156 1.356527 CTCGGGGGCGAAAAACGTAG 61.357 60.000 0.00 0.00 44.60 3.51
156 157 1.374505 CTCGGGGGCGAAAAACGTA 60.375 57.895 0.00 0.00 44.60 3.57
157 158 2.667199 CTCGGGGGCGAAAAACGT 60.667 61.111 0.00 0.00 44.60 3.99
158 159 2.667199 ACTCGGGGGCGAAAAACG 60.667 61.111 0.00 0.00 45.66 3.60
511 512 0.914551 CGAGCAATTCCACGTACTCG 59.085 55.000 0.00 0.00 40.70 4.18
512 513 2.273370 TCGAGCAATTCCACGTACTC 57.727 50.000 0.00 0.00 0.00 2.59
513 514 2.334838 GTTCGAGCAATTCCACGTACT 58.665 47.619 0.00 0.00 0.00 2.73
514 515 1.392510 GGTTCGAGCAATTCCACGTAC 59.607 52.381 0.53 0.00 0.00 3.67
515 516 1.673626 GGGTTCGAGCAATTCCACGTA 60.674 52.381 0.53 0.00 0.00 3.57
516 517 0.953960 GGGTTCGAGCAATTCCACGT 60.954 55.000 0.53 0.00 0.00 4.49
517 518 1.644786 GGGGTTCGAGCAATTCCACG 61.645 60.000 0.53 0.00 0.00 4.94
518 519 0.608035 TGGGGTTCGAGCAATTCCAC 60.608 55.000 0.53 0.00 0.00 4.02
519 520 0.322456 CTGGGGTTCGAGCAATTCCA 60.322 55.000 0.53 2.55 0.00 3.53
520 521 1.657751 GCTGGGGTTCGAGCAATTCC 61.658 60.000 0.53 0.00 43.07 3.01
521 522 1.657751 GGCTGGGGTTCGAGCAATTC 61.658 60.000 0.53 0.00 44.97 2.17
522 523 1.678970 GGCTGGGGTTCGAGCAATT 60.679 57.895 0.53 0.00 44.97 2.32
523 524 2.044946 GGCTGGGGTTCGAGCAAT 60.045 61.111 0.53 0.00 44.97 3.56
524 525 4.344865 GGGCTGGGGTTCGAGCAA 62.345 66.667 0.53 0.00 44.97 3.91
541 542 2.279784 GAATCCTGCTCTCGGCGG 60.280 66.667 7.21 0.00 45.43 6.13
542 543 1.591059 CTGAATCCTGCTCTCGGCG 60.591 63.158 0.00 0.00 45.43 6.46
543 544 0.107945 AACTGAATCCTGCTCTCGGC 60.108 55.000 0.00 0.00 42.22 5.54
544 545 1.205655 TGAACTGAATCCTGCTCTCGG 59.794 52.381 0.00 0.00 0.00 4.63
545 546 2.538437 CTGAACTGAATCCTGCTCTCG 58.462 52.381 0.00 0.00 0.00 4.04
546 547 2.499289 TCCTGAACTGAATCCTGCTCTC 59.501 50.000 0.00 0.00 0.00 3.20
547 548 2.544721 TCCTGAACTGAATCCTGCTCT 58.455 47.619 0.00 0.00 0.00 4.09
548 549 3.340814 TTCCTGAACTGAATCCTGCTC 57.659 47.619 0.00 0.00 0.00 4.26
549 550 4.018597 AGAATTCCTGAACTGAATCCTGCT 60.019 41.667 0.65 0.00 31.39 4.24
550 551 4.268359 AGAATTCCTGAACTGAATCCTGC 58.732 43.478 0.65 0.00 31.39 4.85
551 552 5.942236 TGAAGAATTCCTGAACTGAATCCTG 59.058 40.000 0.65 0.00 46.93 3.86
552 553 6.013032 TCTGAAGAATTCCTGAACTGAATCCT 60.013 38.462 0.65 0.00 46.93 3.24
553 554 6.176183 TCTGAAGAATTCCTGAACTGAATCC 58.824 40.000 0.65 0.00 46.93 3.01
554 555 7.678947 TTCTGAAGAATTCCTGAACTGAATC 57.321 36.000 0.65 0.00 46.93 2.52
568 569 9.525826 AAGGTCATAAACTGAATTCTGAAGAAT 57.474 29.630 18.13 0.00 45.91 2.40
569 570 8.924511 AAGGTCATAAACTGAATTCTGAAGAA 57.075 30.769 18.13 0.00 35.07 2.52
570 571 8.924511 AAAGGTCATAAACTGAATTCTGAAGA 57.075 30.769 18.13 6.21 35.07 2.87
571 572 9.617975 GAAAAGGTCATAAACTGAATTCTGAAG 57.382 33.333 18.13 4.65 35.07 3.02
572 573 8.576442 GGAAAAGGTCATAAACTGAATTCTGAA 58.424 33.333 18.13 0.00 35.07 3.02
573 574 7.094805 CGGAAAAGGTCATAAACTGAATTCTGA 60.095 37.037 18.13 4.19 35.07 3.27
574 575 7.023575 CGGAAAAGGTCATAAACTGAATTCTG 58.976 38.462 10.51 10.51 35.07 3.02
575 576 6.940298 TCGGAAAAGGTCATAAACTGAATTCT 59.060 34.615 7.05 0.00 35.07 2.40
576 577 7.141100 TCGGAAAAGGTCATAAACTGAATTC 57.859 36.000 0.00 0.00 35.07 2.17
577 578 7.393234 TGATCGGAAAAGGTCATAAACTGAATT 59.607 33.333 0.00 0.00 35.07 2.17
578 579 6.884295 TGATCGGAAAAGGTCATAAACTGAAT 59.116 34.615 0.00 0.00 35.07 2.57
579 580 6.234920 TGATCGGAAAAGGTCATAAACTGAA 58.765 36.000 0.00 0.00 35.07 3.02
580 581 5.800296 TGATCGGAAAAGGTCATAAACTGA 58.200 37.500 0.00 0.00 0.00 3.41
581 582 6.683974 ATGATCGGAAAAGGTCATAAACTG 57.316 37.500 0.00 0.00 30.03 3.16
582 583 6.766467 GGTATGATCGGAAAAGGTCATAAACT 59.234 38.462 2.00 0.00 35.88 2.66
583 584 6.766467 AGGTATGATCGGAAAAGGTCATAAAC 59.234 38.462 2.00 0.10 35.88 2.01
584 585 6.895782 AGGTATGATCGGAAAAGGTCATAAA 58.104 36.000 2.00 0.00 35.88 1.40
585 586 6.494666 AGGTATGATCGGAAAAGGTCATAA 57.505 37.500 2.00 0.00 35.88 1.90
586 587 6.288294 CAAGGTATGATCGGAAAAGGTCATA 58.712 40.000 0.00 0.00 33.65 2.15
587 588 5.126067 CAAGGTATGATCGGAAAAGGTCAT 58.874 41.667 0.00 0.00 35.62 3.06
588 589 4.513442 CAAGGTATGATCGGAAAAGGTCA 58.487 43.478 0.00 0.00 0.00 4.02
589 590 3.877508 CCAAGGTATGATCGGAAAAGGTC 59.122 47.826 0.00 0.00 0.00 3.85
590 591 3.265995 ACCAAGGTATGATCGGAAAAGGT 59.734 43.478 0.00 0.00 0.00 3.50
591 592 3.886123 ACCAAGGTATGATCGGAAAAGG 58.114 45.455 0.00 0.00 0.00 3.11
592 593 5.393027 CCAAACCAAGGTATGATCGGAAAAG 60.393 44.000 0.00 0.00 0.00 2.27
593 594 4.461081 CCAAACCAAGGTATGATCGGAAAA 59.539 41.667 0.00 0.00 0.00 2.29
594 595 4.013728 CCAAACCAAGGTATGATCGGAAA 58.986 43.478 0.00 0.00 0.00 3.13
595 596 3.009695 ACCAAACCAAGGTATGATCGGAA 59.990 43.478 0.00 0.00 37.67 4.30
596 597 2.574369 ACCAAACCAAGGTATGATCGGA 59.426 45.455 0.00 0.00 37.67 4.55
597 598 2.999331 ACCAAACCAAGGTATGATCGG 58.001 47.619 0.00 0.00 37.67 4.18
610 611 1.974875 CCCCAAGCGGTACCAAACC 60.975 63.158 13.54 0.00 45.77 3.27
611 612 2.632544 GCCCCAAGCGGTACCAAAC 61.633 63.158 13.54 0.05 0.00 2.93
612 613 2.282603 GCCCCAAGCGGTACCAAA 60.283 61.111 13.54 0.00 0.00 3.28
621 622 3.282271 GCTTCTTCAGCCCCAAGC 58.718 61.111 0.00 0.00 43.65 4.01
629 630 0.662619 TGGCGTGTTTGCTTCTTCAG 59.337 50.000 0.00 0.00 34.52 3.02
630 631 0.380378 GTGGCGTGTTTGCTTCTTCA 59.620 50.000 0.00 0.00 34.52 3.02
631 632 0.657368 CGTGGCGTGTTTGCTTCTTC 60.657 55.000 0.00 0.00 34.52 2.87
632 633 1.355210 CGTGGCGTGTTTGCTTCTT 59.645 52.632 0.00 0.00 34.52 2.52
633 634 3.022287 CGTGGCGTGTTTGCTTCT 58.978 55.556 0.00 0.00 34.52 2.85
634 635 2.725815 GCGTGGCGTGTTTGCTTC 60.726 61.111 0.00 0.00 34.52 3.86
648 649 4.868116 AACAAGGTGGTGCCGCGT 62.868 61.111 4.92 0.00 43.70 6.01
649 650 4.025401 GAACAAGGTGGTGCCGCG 62.025 66.667 0.00 0.00 43.70 6.46
650 651 3.670377 GGAACAAGGTGGTGCCGC 61.670 66.667 0.00 0.00 43.70 6.53
651 652 2.983592 GGGAACAAGGTGGTGCCG 60.984 66.667 0.00 0.00 35.34 5.69
652 653 2.600470 GGGGAACAAGGTGGTGCC 60.600 66.667 0.00 0.00 45.77 5.01
653 654 2.197324 TGGGGAACAAGGTGGTGC 59.803 61.111 0.00 0.00 0.00 5.01
654 655 1.530655 GGTGGGGAACAAGGTGGTG 60.531 63.158 0.00 0.00 0.00 4.17
655 656 1.293683 AAGGTGGGGAACAAGGTGGT 61.294 55.000 0.00 0.00 0.00 4.16
656 657 0.105709 AAAGGTGGGGAACAAGGTGG 60.106 55.000 0.00 0.00 0.00 4.61
657 658 1.039856 CAAAGGTGGGGAACAAGGTG 58.960 55.000 0.00 0.00 0.00 4.00
658 659 0.759060 GCAAAGGTGGGGAACAAGGT 60.759 55.000 0.00 0.00 0.00 3.50
659 660 0.469892 AGCAAAGGTGGGGAACAAGG 60.470 55.000 0.00 0.00 0.00 3.61
660 661 0.675633 CAGCAAAGGTGGGGAACAAG 59.324 55.000 0.00 0.00 0.00 3.16
661 662 0.260230 TCAGCAAAGGTGGGGAACAA 59.740 50.000 0.00 0.00 0.00 2.83
662 663 0.467290 GTCAGCAAAGGTGGGGAACA 60.467 55.000 0.00 0.00 0.00 3.18
663 664 1.179174 GGTCAGCAAAGGTGGGGAAC 61.179 60.000 0.00 0.00 0.00 3.62
664 665 1.152830 GGTCAGCAAAGGTGGGGAA 59.847 57.895 0.00 0.00 0.00 3.97
665 666 2.843545 GGTCAGCAAAGGTGGGGA 59.156 61.111 0.00 0.00 0.00 4.81
666 667 2.672996 CGGTCAGCAAAGGTGGGG 60.673 66.667 0.00 0.00 0.00 4.96
667 668 2.672996 CCGGTCAGCAAAGGTGGG 60.673 66.667 0.00 0.00 0.00 4.61
668 669 2.113139 ACCGGTCAGCAAAGGTGG 59.887 61.111 0.00 0.00 35.36 4.61
669 670 3.343972 CACCGGTCAGCAAAGGTG 58.656 61.111 2.59 0.00 46.52 4.00
670 671 1.227853 GTCACCGGTCAGCAAAGGT 60.228 57.895 2.59 0.00 37.49 3.50
671 672 2.317609 CGTCACCGGTCAGCAAAGG 61.318 63.158 2.59 0.00 0.00 3.11
672 673 0.878523 TTCGTCACCGGTCAGCAAAG 60.879 55.000 2.59 0.00 33.95 2.77
673 674 0.250124 ATTCGTCACCGGTCAGCAAA 60.250 50.000 2.59 0.00 33.95 3.68
674 675 0.250124 AATTCGTCACCGGTCAGCAA 60.250 50.000 2.59 0.00 33.95 3.91
675 676 0.669318 GAATTCGTCACCGGTCAGCA 60.669 55.000 2.59 0.00 33.95 4.41
676 677 1.359459 GGAATTCGTCACCGGTCAGC 61.359 60.000 2.59 0.00 33.95 4.26
677 678 1.076533 CGGAATTCGTCACCGGTCAG 61.077 60.000 2.59 0.00 42.48 3.51
678 679 1.080366 CGGAATTCGTCACCGGTCA 60.080 57.895 2.59 0.00 42.48 4.02
679 680 3.776656 CGGAATTCGTCACCGGTC 58.223 61.111 2.59 0.00 42.48 4.79
696 697 0.094387 GTCGGTGAGACGTAGACGAC 59.906 60.000 9.41 12.57 42.79 4.34
697 698 2.449548 GTCGGTGAGACGTAGACGA 58.550 57.895 9.41 0.00 43.02 4.20
771 772 1.344763 GCCTGTATATCTGGAACGCCT 59.655 52.381 0.00 0.00 37.33 5.52
772 773 1.070134 TGCCTGTATATCTGGAACGCC 59.930 52.381 0.00 0.00 37.33 5.68
785 786 6.976934 TCATACAGTATCTGATTGCCTGTA 57.023 37.500 18.47 18.47 41.37 2.74
787 788 9.445878 AATTATCATACAGTATCTGATTGCCTG 57.554 33.333 3.70 3.12 35.18 4.85
788 789 9.445878 CAATTATCATACAGTATCTGATTGCCT 57.554 33.333 3.70 0.00 35.18 4.75
789 790 9.440773 TCAATTATCATACAGTATCTGATTGCC 57.559 33.333 3.70 0.00 35.18 4.52
797 800 9.056005 TGGCTTGTTCAATTATCATACAGTATC 57.944 33.333 0.00 0.00 0.00 2.24
822 825 7.984050 TCTTATTATTCTCTCTTCAGGTTGCTG 59.016 37.037 0.00 0.00 0.00 4.41
823 826 7.984617 GTCTTATTATTCTCTCTTCAGGTTGCT 59.015 37.037 0.00 0.00 0.00 3.91
857 864 2.165845 ACGTAGCTAGCTGGGTTACTTG 59.834 50.000 27.68 7.60 0.00 3.16
891 901 2.102420 GTCAAAGGGGAGTTTTTGGTGG 59.898 50.000 0.00 0.00 35.52 4.61
926 938 2.816672 TGCATTTCATTGCGGTTCTGTA 59.183 40.909 0.00 0.00 45.77 2.74
932 944 1.741706 CTCTCTGCATTTCATTGCGGT 59.258 47.619 5.27 0.00 46.81 5.68
961 980 3.053077 ACAGGGGCTTATATAACCAGCA 58.947 45.455 7.12 0.00 35.05 4.41
962 981 3.072476 TGACAGGGGCTTATATAACCAGC 59.928 47.826 12.99 6.44 0.00 4.85
963 982 4.505039 GGTGACAGGGGCTTATATAACCAG 60.505 50.000 12.99 4.70 0.00 4.00
1018 1037 3.181445 TGATTGCTGGTGTAGGAAGTGTT 60.181 43.478 0.00 0.00 40.25 3.32
1137 1199 3.064207 GTTCCACTTGATGTCGCAGTTA 58.936 45.455 0.00 0.00 0.00 2.24
1360 1425 3.922240 GCACAAACTCATTGGCAAGTATG 59.078 43.478 5.96 0.00 43.66 2.39
1367 1445 0.032403 TGCAGCACAAACTCATTGGC 59.968 50.000 0.00 0.00 43.66 4.52
1381 1459 1.741706 ACATACAGTGAGCATTGCAGC 59.258 47.619 11.91 2.98 0.00 5.25
1430 1530 1.307866 ATGGTCCTTCCCCACCGAT 60.308 57.895 0.00 0.00 35.15 4.18
1806 1906 3.148279 GGGGCAGACGTCGAGGAT 61.148 66.667 12.85 0.00 0.00 3.24
2329 2489 4.890988 TGAATGTTATCTCCCCTGAGGTA 58.109 43.478 0.00 0.00 39.23 3.08
2335 2495 3.203040 CAGGGTTGAATGTTATCTCCCCT 59.797 47.826 0.00 0.00 39.41 4.79
2343 2503 1.992557 AGGGAGCAGGGTTGAATGTTA 59.007 47.619 0.00 0.00 0.00 2.41
2344 2504 0.779997 AGGGAGCAGGGTTGAATGTT 59.220 50.000 0.00 0.00 0.00 2.71
2347 2507 1.201429 ACGAGGGAGCAGGGTTGAAT 61.201 55.000 0.00 0.00 0.00 2.57
2386 2557 2.231964 CCCCACCATTCACAACATCAAG 59.768 50.000 0.00 0.00 0.00 3.02
2409 2580 1.672854 GGTCGTCCCGATCATGGTCA 61.673 60.000 6.80 0.00 36.93 4.02
2458 2629 1.486439 CAATGGTGTTTGACGTTGGC 58.514 50.000 0.00 0.00 0.00 4.52
2467 2638 2.698274 GTCCAAAGTCCCAATGGTGTTT 59.302 45.455 0.00 0.00 35.66 2.83
2475 2646 2.040278 CTGAGATGGTCCAAAGTCCCAA 59.960 50.000 0.00 0.00 0.00 4.12
2478 2649 1.065126 CCCTGAGATGGTCCAAAGTCC 60.065 57.143 0.00 0.00 0.00 3.85
2496 2667 2.384433 GGAGGAACCCCTAAGCCCC 61.384 68.421 0.00 0.00 44.53 5.80
2519 2690 0.729690 GAAGTCAATGCGGCTCTTCC 59.270 55.000 0.00 0.00 31.47 3.46
2531 2702 1.415672 AAGCTCACCCGGGAAGTCAA 61.416 55.000 32.02 4.20 0.00 3.18
2543 2714 0.514691 CGGCACTTCAAGAAGCTCAC 59.485 55.000 9.62 0.00 41.99 3.51
2550 2721 3.244215 ACTCTCAAATCGGCACTTCAAGA 60.244 43.478 0.00 0.00 0.00 3.02
2560 2731 1.812571 CAAACCCCACTCTCAAATCGG 59.187 52.381 0.00 0.00 0.00 4.18
2581 2752 2.920912 CATGCATCCATGGGGGCC 60.921 66.667 21.03 0.00 44.07 5.80
2597 2768 2.703536 TCAAGAGCCCAGAGTTGTAACA 59.296 45.455 0.00 0.00 0.00 2.41
2599 2770 4.134563 GTTTCAAGAGCCCAGAGTTGTAA 58.865 43.478 0.00 0.00 0.00 2.41
2606 2777 1.625818 GGAGAGTTTCAAGAGCCCAGA 59.374 52.381 0.00 0.00 0.00 3.86
2609 2780 1.021920 GCGGAGAGTTTCAAGAGCCC 61.022 60.000 0.00 0.00 0.00 5.19
2641 2812 2.333014 CCGAAGACAGCTTTGACTCTC 58.667 52.381 0.00 0.00 37.67 3.20
2642 2813 1.606737 GCCGAAGACAGCTTTGACTCT 60.607 52.381 0.00 0.00 37.67 3.24
2648 2819 3.050275 GGCGCCGAAGACAGCTTT 61.050 61.111 12.58 0.00 33.61 3.51
2653 2824 3.950794 GATGTGGGCGCCGAAGACA 62.951 63.158 22.54 19.78 0.00 3.41
2744 2915 3.049344 AGAAGACAAGAAGGAAGGTGGT 58.951 45.455 0.00 0.00 0.00 4.16
2770 2941 1.149148 GGAGTGGCGTGAAAAGAGAC 58.851 55.000 0.00 0.00 0.00 3.36
2780 2951 2.711922 CCGCTAGAAGGAGTGGCGT 61.712 63.158 0.00 0.00 43.57 5.68
2803 2974 1.165907 TGAAGTCAAACAGCTGCGGG 61.166 55.000 15.27 2.89 0.00 6.13
2806 2977 1.672881 ACTGTGAAGTCAAACAGCTGC 59.327 47.619 15.27 0.00 46.28 5.25
2824 2995 0.605860 ACACGAGACAGCCGACTACT 60.606 55.000 0.00 0.00 0.00 2.57
2826 2997 0.887836 ACACACGAGACAGCCGACTA 60.888 55.000 0.00 0.00 0.00 2.59
2834 3005 2.959599 GCGCACACACACGAGACA 60.960 61.111 0.30 0.00 0.00 3.41
2835 3006 4.046998 CGCGCACACACACGAGAC 62.047 66.667 8.75 0.00 0.00 3.36
2843 3014 2.866750 CCTTATTGCGCGCACACA 59.133 55.556 36.72 21.36 0.00 3.72
2844 3015 2.527547 AAGCCTTATTGCGCGCACAC 62.528 55.000 36.72 18.80 36.02 3.82
2877 3048 2.190578 GGAGGGCATGTCCTTCGG 59.809 66.667 22.38 0.00 41.57 4.30
2889 3060 1.543358 GAAGCAGCAAAAGAAGGAGGG 59.457 52.381 0.00 0.00 0.00 4.30
2916 3087 3.453679 GGTCCTCGCGGAAGAGCT 61.454 66.667 6.13 0.00 42.08 4.09
2940 3111 6.538021 GCACAGAGACAATTGATCATTCTACT 59.462 38.462 13.59 1.64 0.00 2.57
2941 3112 6.314648 TGCACAGAGACAATTGATCATTCTAC 59.685 38.462 13.59 0.00 0.00 2.59
2942 3113 6.408869 TGCACAGAGACAATTGATCATTCTA 58.591 36.000 13.59 0.00 0.00 2.10
2943 3114 5.250982 TGCACAGAGACAATTGATCATTCT 58.749 37.500 13.59 3.63 0.00 2.40
2944 3115 5.556355 TGCACAGAGACAATTGATCATTC 57.444 39.130 13.59 0.00 0.00 2.67
2945 3116 6.152154 TGAATGCACAGAGACAATTGATCATT 59.848 34.615 13.59 8.67 0.00 2.57
2946 3117 5.650703 TGAATGCACAGAGACAATTGATCAT 59.349 36.000 13.59 0.06 0.00 2.45
2947 3118 5.005094 TGAATGCACAGAGACAATTGATCA 58.995 37.500 13.59 0.00 0.00 2.92
2948 3119 5.556355 TGAATGCACAGAGACAATTGATC 57.444 39.130 13.59 9.70 0.00 2.92
2949 3120 6.152154 TGAATGAATGCACAGAGACAATTGAT 59.848 34.615 13.59 0.00 0.00 2.57
2950 3121 5.474189 TGAATGAATGCACAGAGACAATTGA 59.526 36.000 13.59 0.00 0.00 2.57
2951 3122 5.571741 GTGAATGAATGCACAGAGACAATTG 59.428 40.000 3.24 3.24 35.19 2.32
2952 3123 5.336213 GGTGAATGAATGCACAGAGACAATT 60.336 40.000 3.84 0.00 36.76 2.32
2953 3124 4.157289 GGTGAATGAATGCACAGAGACAAT 59.843 41.667 3.84 0.00 36.76 2.71
2954 3125 3.503363 GGTGAATGAATGCACAGAGACAA 59.497 43.478 3.84 0.00 36.76 3.18
2955 3126 3.076621 GGTGAATGAATGCACAGAGACA 58.923 45.455 3.84 0.00 36.76 3.41
2956 3127 2.421424 GGGTGAATGAATGCACAGAGAC 59.579 50.000 3.84 0.00 36.76 3.36
2957 3128 2.040145 TGGGTGAATGAATGCACAGAGA 59.960 45.455 3.84 0.00 36.76 3.10
2958 3129 2.163010 GTGGGTGAATGAATGCACAGAG 59.837 50.000 3.84 0.00 36.76 3.35
2959 3130 2.161855 GTGGGTGAATGAATGCACAGA 58.838 47.619 3.84 0.00 36.76 3.41
2960 3131 1.887854 TGTGGGTGAATGAATGCACAG 59.112 47.619 3.84 0.00 36.76 3.66
2961 3132 1.612950 GTGTGGGTGAATGAATGCACA 59.387 47.619 3.84 0.00 36.76 4.57
2962 3133 1.067635 GGTGTGGGTGAATGAATGCAC 60.068 52.381 0.00 0.00 0.00 4.57
2963 3134 1.255882 GGTGTGGGTGAATGAATGCA 58.744 50.000 0.00 0.00 0.00 3.96
2964 3135 0.171007 CGGTGTGGGTGAATGAATGC 59.829 55.000 0.00 0.00 0.00 3.56
2965 3136 1.739466 CTCGGTGTGGGTGAATGAATG 59.261 52.381 0.00 0.00 0.00 2.67
2966 3137 1.351017 ACTCGGTGTGGGTGAATGAAT 59.649 47.619 0.00 0.00 0.00 2.57
2967 3138 0.762418 ACTCGGTGTGGGTGAATGAA 59.238 50.000 0.00 0.00 0.00 2.57
2968 3139 1.274167 GTACTCGGTGTGGGTGAATGA 59.726 52.381 0.00 0.00 0.00 2.57
2969 3140 1.001520 TGTACTCGGTGTGGGTGAATG 59.998 52.381 0.00 0.00 0.00 2.67
2970 3141 1.344065 TGTACTCGGTGTGGGTGAAT 58.656 50.000 0.00 0.00 0.00 2.57
2971 3142 1.069513 CTTGTACTCGGTGTGGGTGAA 59.930 52.381 0.00 0.00 0.00 3.18
2972 3143 0.677288 CTTGTACTCGGTGTGGGTGA 59.323 55.000 0.00 0.00 0.00 4.02
2973 3144 0.677288 TCTTGTACTCGGTGTGGGTG 59.323 55.000 0.00 0.00 0.00 4.61
2974 3145 1.640917 ATCTTGTACTCGGTGTGGGT 58.359 50.000 0.00 0.00 0.00 4.51
2975 3146 2.494471 TGTATCTTGTACTCGGTGTGGG 59.506 50.000 0.00 0.00 0.00 4.61
2976 3147 3.057104 TGTGTATCTTGTACTCGGTGTGG 60.057 47.826 0.00 0.00 0.00 4.17
2977 3148 3.918591 GTGTGTATCTTGTACTCGGTGTG 59.081 47.826 0.00 0.00 0.00 3.82
2978 3149 3.570975 TGTGTGTATCTTGTACTCGGTGT 59.429 43.478 0.00 0.00 0.00 4.16
2979 3150 3.918591 GTGTGTGTATCTTGTACTCGGTG 59.081 47.826 0.00 0.00 0.00 4.94
2980 3151 3.570975 TGTGTGTGTATCTTGTACTCGGT 59.429 43.478 0.00 0.00 0.00 4.69
2981 3152 3.918591 GTGTGTGTGTATCTTGTACTCGG 59.081 47.826 0.00 0.00 0.00 4.63
2982 3153 4.617223 CAGTGTGTGTGTATCTTGTACTCG 59.383 45.833 0.00 0.00 0.00 4.18
2983 3154 4.923871 CCAGTGTGTGTGTATCTTGTACTC 59.076 45.833 0.00 0.00 0.00 2.59
2984 3155 4.587262 TCCAGTGTGTGTGTATCTTGTACT 59.413 41.667 0.00 0.00 0.00 2.73
2985 3156 4.878439 TCCAGTGTGTGTGTATCTTGTAC 58.122 43.478 0.00 0.00 0.00 2.90
2986 3157 4.560716 GCTCCAGTGTGTGTGTATCTTGTA 60.561 45.833 0.00 0.00 0.00 2.41
2987 3158 3.803715 GCTCCAGTGTGTGTGTATCTTGT 60.804 47.826 0.00 0.00 0.00 3.16
2988 3159 2.738846 GCTCCAGTGTGTGTGTATCTTG 59.261 50.000 0.00 0.00 0.00 3.02
2989 3160 2.610479 CGCTCCAGTGTGTGTGTATCTT 60.610 50.000 0.00 0.00 0.00 2.40
2990 3161 1.067565 CGCTCCAGTGTGTGTGTATCT 60.068 52.381 0.00 0.00 0.00 1.98
2991 3162 1.350193 CGCTCCAGTGTGTGTGTATC 58.650 55.000 0.00 0.00 0.00 2.24
2992 3163 0.037326 CCGCTCCAGTGTGTGTGTAT 60.037 55.000 0.00 0.00 0.00 2.29
2993 3164 1.365999 CCGCTCCAGTGTGTGTGTA 59.634 57.895 0.00 0.00 0.00 2.90
2994 3165 2.108976 CCGCTCCAGTGTGTGTGT 59.891 61.111 0.00 0.00 0.00 3.72
2995 3166 0.249699 TAACCGCTCCAGTGTGTGTG 60.250 55.000 0.00 0.00 0.00 3.82
2996 3167 0.249741 GTAACCGCTCCAGTGTGTGT 60.250 55.000 0.00 0.00 0.00 3.72
2997 3168 0.249699 TGTAACCGCTCCAGTGTGTG 60.250 55.000 0.00 0.00 0.00 3.82
2998 3169 0.466543 TTGTAACCGCTCCAGTGTGT 59.533 50.000 0.00 0.00 0.00 3.72
2999 3170 1.148310 CTTGTAACCGCTCCAGTGTG 58.852 55.000 0.00 0.00 0.00 3.82
3000 3171 0.034896 CCTTGTAACCGCTCCAGTGT 59.965 55.000 0.00 0.00 0.00 3.55
3001 3172 0.320374 TCCTTGTAACCGCTCCAGTG 59.680 55.000 0.00 0.00 0.00 3.66
3002 3173 0.608640 CTCCTTGTAACCGCTCCAGT 59.391 55.000 0.00 0.00 0.00 4.00
3003 3174 0.741221 GCTCCTTGTAACCGCTCCAG 60.741 60.000 0.00 0.00 0.00 3.86
3004 3175 1.295423 GCTCCTTGTAACCGCTCCA 59.705 57.895 0.00 0.00 0.00 3.86
3005 3176 1.449778 GGCTCCTTGTAACCGCTCC 60.450 63.158 0.00 0.00 0.00 4.70
3006 3177 1.449778 GGGCTCCTTGTAACCGCTC 60.450 63.158 0.00 0.00 0.00 5.03
3007 3178 2.669240 GGGCTCCTTGTAACCGCT 59.331 61.111 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.