Multiple sequence alignment - TraesCS2D01G498200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G498200 chr2D 100.000 8635 0 0 1 8635 593727318 593735952 0.000000e+00 15946.0
1 TraesCS2D01G498200 chr2D 80.602 299 28 17 7568 7851 593737239 593737522 4.090000e-48 204.0
2 TraesCS2D01G498200 chr2D 85.714 112 8 4 677 788 593727869 593727972 2.550000e-20 111.0
3 TraesCS2D01G498200 chr2D 85.714 112 8 4 552 655 593727994 593728105 2.550000e-20 111.0
4 TraesCS2D01G498200 chr2D 88.750 80 8 1 8310 8389 593737866 593737944 7.140000e-16 97.1
5 TraesCS2D01G498200 chr2D 100.000 33 0 0 8123 8155 593735410 593735442 2.600000e-05 62.1
6 TraesCS2D01G498200 chr2D 100.000 33 0 0 8093 8125 593735440 593735472 2.600000e-05 62.1
7 TraesCS2D01G498200 chr2B 94.971 5369 181 39 2706 8038 720576946 720582261 0.000000e+00 8336.0
8 TraesCS2D01G498200 chr2B 95.753 1931 47 9 808 2707 720574975 720576901 0.000000e+00 3079.0
9 TraesCS2D01G498200 chr2B 84.055 577 58 17 7269 7820 720619775 720620342 7.680000e-145 525.0
10 TraesCS2D01G498200 chr2B 83.016 577 69 18 7269 7822 720625151 720625721 6.020000e-136 496.0
11 TraesCS2D01G498200 chr2B 81.801 522 62 17 7269 7769 720637487 720637996 2.900000e-109 407.0
12 TraesCS2D01G498200 chr2B 84.158 404 41 10 7269 7664 720642534 720642922 3.810000e-98 370.0
13 TraesCS2D01G498200 chr2B 81.389 360 38 13 7889 8247 720623052 720623383 5.140000e-67 267.0
14 TraesCS2D01G498200 chr2B 80.332 361 39 15 7889 8248 720584605 720584934 2.410000e-60 244.0
15 TraesCS2D01G498200 chr2B 80.000 360 43 13 7889 8247 720635397 720635728 1.120000e-58 239.0
16 TraesCS2D01G498200 chr2B 85.057 174 16 9 8291 8457 720584931 720585101 1.490000e-37 169.0
17 TraesCS2D01G498200 chr2B 84.971 173 19 6 8291 8457 720633648 720633819 1.490000e-37 169.0
18 TraesCS2D01G498200 chr2B 84.393 173 20 6 8291 8457 720638680 720638851 6.940000e-36 163.0
19 TraesCS2D01G498200 chr2B 82.081 173 24 6 8291 8457 720621297 720621468 3.250000e-29 141.0
20 TraesCS2D01G498200 chr2B 82.249 169 21 6 7691 7851 720584439 720584606 4.200000e-28 137.0
21 TraesCS2D01G498200 chr2B 76.375 309 41 22 7835 8125 720620917 720621211 4.200000e-28 137.0
22 TraesCS2D01G498200 chr2B 81.977 172 18 6 8291 8457 720582428 720582591 5.440000e-27 134.0
23 TraesCS2D01G498200 chr2B 92.500 80 6 0 8310 8389 720618019 720618098 1.970000e-21 115.0
24 TraesCS2D01G498200 chr2B 100.000 47 0 0 679 725 61050968 61051014 4.290000e-13 87.9
25 TraesCS2D01G498200 chr2B 100.000 47 0 0 679 725 80953620 80953574 4.290000e-13 87.9
26 TraesCS2D01G498200 chr2B 88.136 59 7 0 8180 8238 720583746 720583804 4.320000e-08 71.3
27 TraesCS2D01G498200 chr2B 83.099 71 10 1 250 318 352192127 352192197 7.240000e-06 63.9
28 TraesCS2D01G498200 chr2A 97.490 1912 39 5 4182 6088 728602662 728604569 0.000000e+00 3256.0
29 TraesCS2D01G498200 chr2A 96.731 1927 30 7 808 2707 728599143 728601063 0.000000e+00 3179.0
30 TraesCS2D01G498200 chr2A 95.740 1479 36 8 2710 4181 728601112 728602570 0.000000e+00 2357.0
31 TraesCS2D01G498200 chr2A 92.970 1010 44 12 6935 7929 728605429 728606426 0.000000e+00 1447.0
32 TraesCS2D01G498200 chr2A 96.561 727 16 5 6213 6937 728604587 728605306 0.000000e+00 1195.0
33 TraesCS2D01G498200 chr2A 80.952 798 83 35 7321 8086 728613372 728614132 1.260000e-157 568.0
34 TraesCS2D01G498200 chr2A 81.395 301 23 18 7568 7851 728608172 728608456 1.890000e-51 215.0
35 TraesCS2D01G498200 chr2A 91.935 62 5 0 485 546 350519442 350519503 4.290000e-13 87.9
36 TraesCS2D01G498200 chr2A 89.706 68 6 1 246 312 32379052 32378985 1.540000e-12 86.1
37 TraesCS2D01G498200 chr2A 97.872 47 1 0 679 725 373419252 373419206 2.000000e-11 82.4
38 TraesCS2D01G498200 chr7B 93.539 356 20 3 242 597 577383427 577383075 2.140000e-145 527.0
39 TraesCS2D01G498200 chr7B 91.034 145 11 1 3 147 577383615 577383473 2.460000e-45 195.0
40 TraesCS2D01G498200 chr7B 97.917 48 1 0 678 725 729632133 729632086 5.550000e-12 84.2
41 TraesCS2D01G498200 chr7B 97.872 47 1 0 679 725 729601250 729601204 2.000000e-11 82.4
42 TraesCS2D01G498200 chr7B 97.872 47 1 0 679 725 729608033 729607987 2.000000e-11 82.4
43 TraesCS2D01G498200 chr1B 82.609 161 24 3 1338 1495 51611746 51611905 1.170000e-28 139.0
44 TraesCS2D01G498200 chr1B 89.189 74 7 1 240 312 654704041 654704114 3.320000e-14 91.6
45 TraesCS2D01G498200 chr1B 97.872 47 1 0 679 725 14517304 14517258 2.000000e-11 82.4
46 TraesCS2D01G498200 chr3A 89.706 68 6 1 246 312 154734895 154734962 1.540000e-12 86.1
47 TraesCS2D01G498200 chr3A 97.778 45 1 0 681 725 9130267 9130223 2.580000e-10 78.7
48 TraesCS2D01G498200 chr5D 97.872 47 1 0 679 725 256007796 256007750 2.000000e-11 82.4
49 TraesCS2D01G498200 chr5D 91.379 58 3 2 621 677 452887611 452887555 2.580000e-10 78.7
50 TraesCS2D01G498200 chr6B 100.000 36 0 0 753 788 201197075 201197110 5.590000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G498200 chr2D 593727318 593735952 8634 False 15946.000000 15946 100.000000 1 8635 1 chr2D.!!$F1 8634
1 TraesCS2D01G498200 chr2B 720574975 720585101 10126 False 1738.614286 8336 86.925000 808 8457 7 chr2B.!!$F3 7649
2 TraesCS2D01G498200 chr2B 720618019 720625721 7702 False 280.166667 525 83.236000 7269 8457 6 chr2B.!!$F4 1188
3 TraesCS2D01G498200 chr2B 720633648 720642922 9274 False 269.600000 407 83.064600 7269 8457 5 chr2B.!!$F5 1188
4 TraesCS2D01G498200 chr2A 728599143 728608456 9313 False 1941.500000 3256 93.481167 808 7929 6 chr2A.!!$F3 7121
5 TraesCS2D01G498200 chr2A 728613372 728614132 760 False 568.000000 568 80.952000 7321 8086 1 chr2A.!!$F2 765
6 TraesCS2D01G498200 chr7B 577383075 577383615 540 True 361.000000 527 92.286500 3 597 2 chr7B.!!$R4 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 1.019805 GGAAGTAGGAACGCAGCCAC 61.020 60.000 0.00 0.00 0.00 5.01 F
108 109 1.352156 GAAGTAGGAACGCAGCCACG 61.352 60.000 0.00 0.00 39.50 4.94 F
1106 1107 2.237392 CGGACTCTGATTCTTCCCCTTT 59.763 50.000 0.00 0.00 0.00 3.11 F
1108 1109 3.009584 GGACTCTGATTCTTCCCCTTTGT 59.990 47.826 0.00 0.00 0.00 2.83 F
2220 2231 3.076621 CTGACAAGCCATTAGTGAAGCA 58.923 45.455 0.00 0.00 0.00 3.91 F
3107 3192 2.921754 AGTTGCGTCGCTTAATGAGTAC 59.078 45.455 19.50 2.97 0.00 2.73 F
3260 3345 1.857602 GCAAATGAAGCCGAGCGATTC 60.858 52.381 0.00 0.00 0.00 2.52 F
4540 4730 3.942115 GGAGATCTGTTGGGTTCTTAAGC 59.058 47.826 0.00 0.00 0.00 3.09 F
4957 5147 2.227388 CCTGAAGTTGGTGTGCATCTTC 59.773 50.000 0.00 0.00 36.20 2.87 F
6479 6674 0.034089 GGCTCCTGGGCACTTACATT 60.034 55.000 8.98 0.00 40.53 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1106 1107 0.107116 GCTAGGAGAGGAGTCCGACA 60.107 60.000 2.76 0.0 42.05 4.35 R
1561 1562 1.098050 CCACTTCAGCTGTAATGGCC 58.902 55.000 14.67 0.0 0.00 5.36 R
2858 2943 4.088496 GCGTTGAAAATAACATGTGACTGC 59.912 41.667 0.00 0.0 0.00 4.40 R
3107 3192 4.067896 ACATAAAACAGTGCTGAGTGAGG 58.932 43.478 6.17 0.0 0.00 3.86 R
3260 3345 1.986378 CGCTGAAAGTGTACCTCTTCG 59.014 52.381 0.00 0.0 40.27 3.79 R
4852 5042 1.138069 TGCTCACCGACTTCAGTGAAA 59.862 47.619 7.06 0.0 42.19 2.69 R
4921 5111 3.195825 ACTTCAGGGTAAGTGATTCTCGG 59.804 47.826 0.00 0.0 38.28 4.63 R
5470 5660 2.299326 AGCAGGCCAAAATCAAGAGT 57.701 45.000 5.01 0.0 0.00 3.24 R
6698 6896 2.192861 CCAAGCTCAAACGCACCCA 61.193 57.895 0.00 0.0 0.00 4.51 R
8313 11878 0.249031 GCCAGTGGTCAACAACTTGC 60.249 55.000 11.74 0.0 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.138468 GGTCTATAACTGGGCCAGGAAAT 59.862 47.826 35.34 25.51 35.51 2.17
37 38 4.386424 GGTCTATAACTGGGCCAGGAAATT 60.386 45.833 35.34 22.83 35.51 1.82
38 39 4.580580 GTCTATAACTGGGCCAGGAAATTG 59.419 45.833 35.34 23.58 35.51 2.32
39 40 2.990740 TAACTGGGCCAGGAAATTGT 57.009 45.000 35.34 12.56 35.51 2.71
40 41 2.101640 AACTGGGCCAGGAAATTGTT 57.898 45.000 35.34 17.88 35.51 2.83
50 51 2.131023 AGGAAATTGTTTTGGGCCCAA 58.869 42.857 34.07 34.07 0.00 4.12
107 108 1.019805 GGAAGTAGGAACGCAGCCAC 61.020 60.000 0.00 0.00 0.00 5.01
108 109 1.352156 GAAGTAGGAACGCAGCCACG 61.352 60.000 0.00 0.00 39.50 4.94
156 157 4.131088 GCCCCTCGTGACCTCGTC 62.131 72.222 0.00 0.00 0.00 4.20
157 158 3.450115 CCCCTCGTGACCTCGTCC 61.450 72.222 0.00 0.00 0.00 4.79
158 159 3.450115 CCCTCGTGACCTCGTCCC 61.450 72.222 0.00 0.00 0.00 4.46
160 161 2.745100 CTCGTGACCTCGTCCCGA 60.745 66.667 0.00 0.00 39.75 5.14
161 162 3.036783 CTCGTGACCTCGTCCCGAC 62.037 68.421 0.00 0.00 37.50 4.79
228 229 4.789075 TAACCTGCTCGCCGTCGC 62.789 66.667 0.00 0.00 35.26 5.19
309 310 3.787001 CCGCCTCTCCTTCCCACC 61.787 72.222 0.00 0.00 0.00 4.61
313 314 3.003173 CTCTCCTTCCCACCCGCA 61.003 66.667 0.00 0.00 0.00 5.69
462 463 3.972971 CTGCCAGCAGGTCTCCAGC 62.973 68.421 11.91 0.00 40.17 4.85
533 534 5.761726 TGCTTTTCTGCACTATGATATCCAG 59.238 40.000 0.00 0.11 38.12 3.86
542 543 7.154656 TGCACTATGATATCCAGTACATGAAC 58.845 38.462 0.00 0.00 0.00 3.18
543 544 7.154656 GCACTATGATATCCAGTACATGAACA 58.845 38.462 0.00 0.00 0.00 3.18
559 560 7.561021 ACATGAACACACACATAGTTTTGTA 57.439 32.000 0.00 0.00 0.00 2.41
560 561 7.414436 ACATGAACACACACATAGTTTTGTAC 58.586 34.615 0.00 0.00 0.00 2.90
561 562 6.986904 TGAACACACACATAGTTTTGTACA 57.013 33.333 0.00 0.00 0.00 2.90
565 566 5.825679 ACACACACATAGTTTTGTACACCAT 59.174 36.000 0.00 0.00 0.00 3.55
566 567 6.320164 ACACACACATAGTTTTGTACACCATT 59.680 34.615 0.00 0.00 0.00 3.16
567 568 7.147983 ACACACACATAGTTTTGTACACCATTT 60.148 33.333 0.00 0.00 0.00 2.32
568 569 7.378461 CACACACATAGTTTTGTACACCATTTC 59.622 37.037 0.00 0.00 0.00 2.17
569 570 6.861055 CACACATAGTTTTGTACACCATTTCC 59.139 38.462 0.00 0.00 0.00 3.13
570 571 6.547880 ACACATAGTTTTGTACACCATTTCCA 59.452 34.615 0.00 0.00 0.00 3.53
571 572 6.861055 CACATAGTTTTGTACACCATTTCCAC 59.139 38.462 0.00 0.00 0.00 4.02
572 573 4.929819 AGTTTTGTACACCATTTCCACC 57.070 40.909 0.00 0.00 0.00 4.61
573 574 4.542697 AGTTTTGTACACCATTTCCACCT 58.457 39.130 0.00 0.00 0.00 4.00
574 575 4.959839 AGTTTTGTACACCATTTCCACCTT 59.040 37.500 0.00 0.00 0.00 3.50
575 576 6.130569 AGTTTTGTACACCATTTCCACCTTA 58.869 36.000 0.00 0.00 0.00 2.69
576 577 6.608002 AGTTTTGTACACCATTTCCACCTTAA 59.392 34.615 0.00 0.00 0.00 1.85
578 579 7.604657 TTTGTACACCATTTCCACCTTAATT 57.395 32.000 0.00 0.00 0.00 1.40
579 580 8.707796 TTTGTACACCATTTCCACCTTAATTA 57.292 30.769 0.00 0.00 0.00 1.40
580 581 7.931578 TGTACACCATTTCCACCTTAATTAG 57.068 36.000 0.00 0.00 0.00 1.73
581 582 5.914898 ACACCATTTCCACCTTAATTAGC 57.085 39.130 0.00 0.00 0.00 3.09
583 584 6.016555 ACACCATTTCCACCTTAATTAGCTT 58.983 36.000 0.00 0.00 0.00 3.74
585 586 7.672239 ACACCATTTCCACCTTAATTAGCTTTA 59.328 33.333 0.00 0.00 0.00 1.85
586 587 8.695456 CACCATTTCCACCTTAATTAGCTTTAT 58.305 33.333 0.00 0.00 0.00 1.40
587 588 9.267071 ACCATTTCCACCTTAATTAGCTTTATT 57.733 29.630 0.00 0.00 0.00 1.40
588 589 9.533253 CCATTTCCACCTTAATTAGCTTTATTG 57.467 33.333 0.00 0.00 0.00 1.90
637 638 8.251750 TCTACTCGTATTTCTTTGTGATTTGG 57.748 34.615 0.00 0.00 0.00 3.28
638 639 6.877611 ACTCGTATTTCTTTGTGATTTGGT 57.122 33.333 0.00 0.00 0.00 3.67
639 640 7.972832 ACTCGTATTTCTTTGTGATTTGGTA 57.027 32.000 0.00 0.00 0.00 3.25
640 641 8.385898 ACTCGTATTTCTTTGTGATTTGGTAA 57.614 30.769 0.00 0.00 0.00 2.85
641 642 9.010029 ACTCGTATTTCTTTGTGATTTGGTAAT 57.990 29.630 0.00 0.00 0.00 1.89
642 643 9.840427 CTCGTATTTCTTTGTGATTTGGTAATT 57.160 29.630 0.00 0.00 0.00 1.40
653 654 7.932335 TGTGATTTGGTAATTAGTTTGAACGT 58.068 30.769 0.00 0.00 0.00 3.99
654 655 8.407064 TGTGATTTGGTAATTAGTTTGAACGTT 58.593 29.630 0.00 0.00 0.00 3.99
655 656 8.898792 GTGATTTGGTAATTAGTTTGAACGTTC 58.101 33.333 21.42 21.42 0.00 3.95
656 657 8.622157 TGATTTGGTAATTAGTTTGAACGTTCA 58.378 29.630 26.53 26.53 34.92 3.18
657 658 8.791355 ATTTGGTAATTAGTTTGAACGTTCAC 57.209 30.769 29.74 19.25 36.83 3.18
658 659 6.922247 TGGTAATTAGTTTGAACGTTCACA 57.078 33.333 29.74 21.41 36.83 3.58
659 660 7.499321 TGGTAATTAGTTTGAACGTTCACAT 57.501 32.000 29.74 19.73 36.83 3.21
660 661 7.356540 TGGTAATTAGTTTGAACGTTCACATG 58.643 34.615 29.74 0.00 36.83 3.21
661 662 7.012515 TGGTAATTAGTTTGAACGTTCACATGT 59.987 33.333 29.74 16.86 36.83 3.21
662 663 7.532884 GGTAATTAGTTTGAACGTTCACATGTC 59.467 37.037 29.74 17.04 36.83 3.06
663 664 6.612247 ATTAGTTTGAACGTTCACATGTCA 57.388 33.333 29.74 12.15 36.83 3.58
664 665 6.612247 TTAGTTTGAACGTTCACATGTCAT 57.388 33.333 29.74 13.87 36.83 3.06
665 666 7.716768 TTAGTTTGAACGTTCACATGTCATA 57.283 32.000 29.74 10.62 36.83 2.15
666 667 6.801539 AGTTTGAACGTTCACATGTCATAT 57.198 33.333 29.74 6.56 36.83 1.78
667 668 7.202016 AGTTTGAACGTTCACATGTCATATT 57.798 32.000 29.74 4.89 36.83 1.28
668 669 7.077605 AGTTTGAACGTTCACATGTCATATTG 58.922 34.615 29.74 0.00 36.83 1.90
669 670 4.968626 TGAACGTTCACATGTCATATTGC 58.031 39.130 26.53 0.00 31.01 3.56
671 672 5.181056 TGAACGTTCACATGTCATATTGCTT 59.819 36.000 26.53 0.00 31.01 3.91
672 673 6.370166 TGAACGTTCACATGTCATATTGCTTA 59.630 34.615 26.53 0.00 31.01 3.09
673 674 6.925610 ACGTTCACATGTCATATTGCTTAT 57.074 33.333 0.00 0.00 0.00 1.73
675 676 6.538381 ACGTTCACATGTCATATTGCTTATCA 59.462 34.615 0.00 0.00 0.00 2.15
677 678 7.585210 CGTTCACATGTCATATTGCTTATCAAG 59.415 37.037 0.00 0.00 38.22 3.02
678 679 8.400947 GTTCACATGTCATATTGCTTATCAAGT 58.599 33.333 0.00 0.00 38.22 3.16
679 680 8.510243 TCACATGTCATATTGCTTATCAAGTT 57.490 30.769 0.00 0.00 38.22 2.66
680 681 8.959548 TCACATGTCATATTGCTTATCAAGTTT 58.040 29.630 0.00 0.00 38.22 2.66
681 682 9.577110 CACATGTCATATTGCTTATCAAGTTTT 57.423 29.630 0.00 0.00 38.22 2.43
682 683 9.577110 ACATGTCATATTGCTTATCAAGTTTTG 57.423 29.630 0.00 0.00 38.22 2.44
683 684 8.537223 CATGTCATATTGCTTATCAAGTTTTGC 58.463 33.333 0.00 0.00 38.22 3.68
710 711 7.340232 ACATCATTTCTGCCTCAATTAGCTTTA 59.660 33.333 0.00 0.00 0.00 1.85
721 722 9.670719 GCCTCAATTAGCTTTATTGATAGAAAC 57.329 33.333 18.65 6.84 40.24 2.78
752 753 9.832445 ACCATATTGTGAAATTTATCTACTCGT 57.168 29.630 0.00 0.00 0.00 4.18
799 800 9.988350 ATTAGTTAGAACGTTGCTTATCAATTG 57.012 29.630 5.00 0.00 36.99 2.32
800 801 7.667043 AGTTAGAACGTTGCTTATCAATTGA 57.333 32.000 11.26 11.26 36.99 2.57
801 802 7.519002 AGTTAGAACGTTGCTTATCAATTGAC 58.481 34.615 11.07 0.00 36.99 3.18
804 805 6.142817 AGAACGTTGCTTATCAATTGACAAC 58.857 36.000 21.20 21.20 36.99 3.32
805 806 5.431420 ACGTTGCTTATCAATTGACAACA 57.569 34.783 26.36 14.85 37.77 3.33
806 807 5.451908 ACGTTGCTTATCAATTGACAACAG 58.548 37.500 26.36 22.16 37.77 3.16
1083 1084 3.803082 CGCAATGCCACACCCTCG 61.803 66.667 0.00 0.00 0.00 4.63
1106 1107 2.237392 CGGACTCTGATTCTTCCCCTTT 59.763 50.000 0.00 0.00 0.00 3.11
1108 1109 3.009584 GGACTCTGATTCTTCCCCTTTGT 59.990 47.826 0.00 0.00 0.00 2.83
1561 1562 3.123621 GCCTATCTGACGTGAAAACTGTG 59.876 47.826 0.00 0.00 0.00 3.66
1628 1629 9.920946 ATTATGGTGATGTTTATAGGTGAAACT 57.079 29.630 0.00 0.00 37.62 2.66
1923 1927 8.246180 AGTAGAAAGCATTTTCAATGTGTATGG 58.754 33.333 1.77 0.00 44.14 2.74
2008 2019 7.040686 GGACTTTTGGATTTTACTCAGCTGTTA 60.041 37.037 14.67 3.59 0.00 2.41
2212 2223 3.694072 CCGGAATTTCTGACAAGCCATTA 59.306 43.478 6.81 0.00 0.00 1.90
2220 2231 3.076621 CTGACAAGCCATTAGTGAAGCA 58.923 45.455 0.00 0.00 0.00 3.91
2717 2802 3.733337 ACGCATGTCTATCAGGAATTCC 58.267 45.455 17.31 17.31 0.00 3.01
3028 3113 4.618693 GCTCTTAGGTGCCGGTAAGATATC 60.619 50.000 11.47 0.00 35.28 1.63
3107 3192 2.921754 AGTTGCGTCGCTTAATGAGTAC 59.078 45.455 19.50 2.97 0.00 2.73
3112 3197 3.106672 CGTCGCTTAATGAGTACCTCAC 58.893 50.000 0.00 0.00 43.63 3.51
3260 3345 1.857602 GCAAATGAAGCCGAGCGATTC 60.858 52.381 0.00 0.00 0.00 2.52
3394 3484 4.082408 TCTCCAGTTATTGTGTGGTCTACG 60.082 45.833 0.00 0.00 32.73 3.51
3627 3722 6.546034 AGTTTACACTCTTACCAATTGCTTGT 59.454 34.615 0.00 0.00 0.00 3.16
4540 4730 3.942115 GGAGATCTGTTGGGTTCTTAAGC 59.058 47.826 0.00 0.00 0.00 3.09
4852 5042 6.319658 CCCTGAAGTTACTGTGCATTTGATAT 59.680 38.462 0.00 0.00 0.00 1.63
4921 5111 5.919141 GCTGCCAATTGATGATCTTTCATAC 59.081 40.000 7.12 0.00 42.73 2.39
4957 5147 2.227388 CCTGAAGTTGGTGTGCATCTTC 59.773 50.000 0.00 0.00 36.20 2.87
5000 5190 9.360901 AGCTTATTGATTGATCTACTCTGTCTA 57.639 33.333 0.00 0.00 0.00 2.59
5470 5660 5.263599 TGGTGGAAGGACTTATTACGACTA 58.736 41.667 0.00 0.00 0.00 2.59
5471 5661 5.126061 TGGTGGAAGGACTTATTACGACTAC 59.874 44.000 0.00 0.00 0.00 2.73
5758 5949 6.072508 TGTCAGGAATTACTTAGCTTGCTTTG 60.073 38.462 0.00 0.00 0.00 2.77
5790 5981 7.161404 TCAACTGATATTTTGTGCTGACTACT 58.839 34.615 0.00 0.00 0.00 2.57
6304 6498 7.264221 TCATAATGATTTGGTTTGCGCTTAAT 58.736 30.769 9.73 0.00 0.00 1.40
6350 6545 4.385825 TCAGGCGTGTTTGTATTTTCTCT 58.614 39.130 6.26 0.00 0.00 3.10
6468 6663 2.692041 GAGATGGATTTTTGGCTCCTGG 59.308 50.000 0.00 0.00 32.47 4.45
6478 6673 1.207488 TGGCTCCTGGGCACTTACAT 61.207 55.000 8.98 0.00 45.79 2.29
6479 6674 0.034089 GGCTCCTGGGCACTTACATT 60.034 55.000 8.98 0.00 40.53 2.71
6831 7029 1.898154 GGCACCACCTACACGAGAT 59.102 57.895 0.00 0.00 34.51 2.75
6919 7117 5.724854 ACTGTTTACCTATGCCCTAAAGAGA 59.275 40.000 0.00 0.00 29.63 3.10
7020 7343 4.506654 GCATTTAGCATGAATGGCAAAGAG 59.493 41.667 0.00 0.00 44.79 2.85
7119 7442 3.372206 CCTCTGTTGTTTTCGCTCTATGG 59.628 47.826 0.00 0.00 0.00 2.74
7192 7515 1.072159 AGAGAGTGGCTTGGCACAC 59.928 57.895 25.19 19.95 39.29 3.82
7253 7576 7.061557 CGTCATAGTACTTGACATGCTGATATG 59.938 40.741 24.81 11.03 42.90 1.78
7264 7587 7.604549 TGACATGCTGATATGTGAAAACAATT 58.395 30.769 0.00 0.00 41.15 2.32
7403 7734 7.400339 TCTCTTGTGGATAAATACAACTCCTCT 59.600 37.037 0.00 0.00 33.60 3.69
7587 7921 0.249911 AGAGAACACGGCACAAGGAC 60.250 55.000 0.00 0.00 0.00 3.85
7652 7986 4.887748 TGTGAGGAATTTGAGTCAGACTC 58.112 43.478 22.09 22.09 45.26 3.36
7686 8031 2.752829 GCCAAGGAGCATGCCCTAATTA 60.753 50.000 23.01 0.00 32.77 1.40
7693 8038 1.238439 CATGCCCTAATTAGTGGCCG 58.762 55.000 27.99 20.26 44.72 6.13
7719 8064 1.758280 AGGGTATGTATTTGGCGTCGA 59.242 47.619 0.00 0.00 0.00 4.20
7758 8104 4.141482 GGGGCACAGAAACCATAGAGAATA 60.141 45.833 0.00 0.00 0.00 1.75
7770 8116 7.437713 ACCATAGAGAATATGAGGTTTGTGA 57.562 36.000 0.00 0.00 0.00 3.58
7822 8173 3.951775 TTCTGGAGAGAGCTGAAGTTC 57.048 47.619 0.00 0.00 0.00 3.01
7864 8777 6.298853 GTTTTGCTTGTGAGTTGTTTCAAAG 58.701 36.000 0.00 0.00 0.00 2.77
7865 8778 4.782019 TGCTTGTGAGTTGTTTCAAAGT 57.218 36.364 0.00 0.00 0.00 2.66
7866 8779 5.132897 TGCTTGTGAGTTGTTTCAAAGTT 57.867 34.783 0.00 0.00 0.00 2.66
7867 8780 5.160641 TGCTTGTGAGTTGTTTCAAAGTTC 58.839 37.500 0.00 0.00 0.00 3.01
7868 8781 5.160641 GCTTGTGAGTTGTTTCAAAGTTCA 58.839 37.500 0.00 0.00 0.00 3.18
7869 8782 5.633182 GCTTGTGAGTTGTTTCAAAGTTCAA 59.367 36.000 0.00 0.00 0.00 2.69
7870 8783 6.183360 GCTTGTGAGTTGTTTCAAAGTTCAAG 60.183 38.462 0.00 0.00 33.22 3.02
7902 11450 2.030371 CCCTAGGTAGGTCTTCGTTCC 58.970 57.143 8.29 0.00 42.03 3.62
7908 11456 1.275573 GTAGGTCTTCGTTCCTGGCTT 59.724 52.381 0.00 0.00 35.51 4.35
7937 11485 0.311165 TAGCGCGAAGACCTATGCTC 59.689 55.000 12.10 0.00 34.08 4.26
7950 11499 6.872920 AGACCTATGCTCTGAGACTTAAAAG 58.127 40.000 9.28 0.00 0.00 2.27
7963 11512 8.752005 TGAGACTTAAAAGGATGGAATAATGG 57.248 34.615 0.00 0.00 0.00 3.16
8030 11594 5.939764 ACCTACTGATACTTGATGCAAGA 57.060 39.130 13.56 0.00 43.42 3.02
8041 11605 6.882610 ACTTGATGCAAGAACAATGAAGTA 57.117 33.333 13.56 0.00 43.42 2.24
8065 11629 4.263462 TGCATTGGTTAGGTGATTGAGAGT 60.263 41.667 0.00 0.00 0.00 3.24
8083 11648 3.763897 AGAGTTTTGCAAGTGAAAGGTGT 59.236 39.130 0.00 0.00 0.00 4.16
8085 11650 3.509575 AGTTTTGCAAGTGAAAGGTGTCA 59.490 39.130 0.00 0.00 0.00 3.58
8087 11652 4.734398 TTTGCAAGTGAAAGGTGTCATT 57.266 36.364 0.00 0.00 0.00 2.57
8088 11653 3.713858 TGCAAGTGAAAGGTGTCATTG 57.286 42.857 0.00 0.00 0.00 2.82
8089 11654 2.361757 TGCAAGTGAAAGGTGTCATTGG 59.638 45.455 0.00 0.00 0.00 3.16
8090 11655 2.362077 GCAAGTGAAAGGTGTCATTGGT 59.638 45.455 0.00 0.00 0.00 3.67
8091 11656 3.550842 GCAAGTGAAAGGTGTCATTGGTC 60.551 47.826 0.00 0.00 0.00 4.02
8092 11657 2.494059 AGTGAAAGGTGTCATTGGTCG 58.506 47.619 0.00 0.00 0.00 4.79
8094 11659 2.616842 GTGAAAGGTGTCATTGGTCGTT 59.383 45.455 0.00 0.00 0.00 3.85
8095 11660 3.066203 GTGAAAGGTGTCATTGGTCGTTT 59.934 43.478 0.00 0.00 0.00 3.60
8096 11661 4.273969 GTGAAAGGTGTCATTGGTCGTTTA 59.726 41.667 0.00 0.00 0.00 2.01
8097 11662 4.513692 TGAAAGGTGTCATTGGTCGTTTAG 59.486 41.667 0.00 0.00 0.00 1.85
8098 11663 3.764237 AGGTGTCATTGGTCGTTTAGT 57.236 42.857 0.00 0.00 0.00 2.24
8099 11664 3.660865 AGGTGTCATTGGTCGTTTAGTC 58.339 45.455 0.00 0.00 0.00 2.59
8100 11665 2.740447 GGTGTCATTGGTCGTTTAGTCC 59.260 50.000 0.00 0.00 0.00 3.85
8102 11667 4.000988 GTGTCATTGGTCGTTTAGTCCAT 58.999 43.478 0.00 0.00 37.85 3.41
8105 11670 5.049060 TGTCATTGGTCGTTTAGTCCATTTG 60.049 40.000 0.00 0.00 37.85 2.32
8106 11671 5.048991 GTCATTGGTCGTTTAGTCCATTTGT 60.049 40.000 0.00 0.00 37.85 2.83
8107 11672 5.533154 TCATTGGTCGTTTAGTCCATTTGTT 59.467 36.000 0.00 0.00 37.85 2.83
8108 11673 6.711194 TCATTGGTCGTTTAGTCCATTTGTTA 59.289 34.615 0.00 0.00 37.85 2.41
8109 11674 6.548441 TTGGTCGTTTAGTCCATTTGTTAG 57.452 37.500 0.00 0.00 37.85 2.34
8110 11675 4.998672 TGGTCGTTTAGTCCATTTGTTAGG 59.001 41.667 0.00 0.00 33.16 2.69
8111 11676 4.142752 GGTCGTTTAGTCCATTTGTTAGGC 60.143 45.833 0.00 0.00 0.00 3.93
8112 11677 4.694037 GTCGTTTAGTCCATTTGTTAGGCT 59.306 41.667 0.00 0.00 0.00 4.58
8113 11678 5.180680 GTCGTTTAGTCCATTTGTTAGGCTT 59.819 40.000 0.00 0.00 0.00 4.35
8114 11679 6.369615 GTCGTTTAGTCCATTTGTTAGGCTTA 59.630 38.462 0.00 0.00 0.00 3.09
8115 11680 6.369615 TCGTTTAGTCCATTTGTTAGGCTTAC 59.630 38.462 0.00 0.00 0.00 2.34
8116 11681 6.402875 CGTTTAGTCCATTTGTTAGGCTTACC 60.403 42.308 0.61 0.00 0.00 2.85
8139 11704 8.110860 ACCTGAATGTTTAGTCCATTTGTTAG 57.889 34.615 0.00 0.00 32.84 2.34
8141 11706 6.919721 TGAATGTTTAGTCCATTTGTTAGGC 58.080 36.000 0.00 0.00 32.84 3.93
8171 11736 8.328864 CCTGAATGTTAAGCGTATCTTTTAGTC 58.671 37.037 7.08 0.00 36.25 2.59
8172 11737 8.766000 TGAATGTTAAGCGTATCTTTTAGTCA 57.234 30.769 0.00 0.00 36.25 3.41
8173 11738 8.869897 TGAATGTTAAGCGTATCTTTTAGTCAG 58.130 33.333 0.00 0.00 36.25 3.51
8181 11746 8.405418 AGCGTATCTTTTAGTCAGTATGGATA 57.595 34.615 0.00 0.00 36.16 2.59
8215 11780 3.117776 TGATAAGCTCATTCTGCACCCAT 60.118 43.478 0.00 0.00 0.00 4.00
8216 11781 1.471119 AAGCTCATTCTGCACCCATG 58.529 50.000 0.00 0.00 0.00 3.66
8217 11782 0.395311 AGCTCATTCTGCACCCATGG 60.395 55.000 4.14 4.14 0.00 3.66
8229 11794 3.053693 TGCACCCATGGAGTAATAAGCTT 60.054 43.478 15.22 3.48 0.00 3.74
8268 11833 9.525409 ACATAATTCAGCTCAATAAAAATCTGC 57.475 29.630 0.00 0.00 0.00 4.26
8269 11834 9.745880 CATAATTCAGCTCAATAAAAATCTGCT 57.254 29.630 0.00 0.00 0.00 4.24
8270 11835 9.962783 ATAATTCAGCTCAATAAAAATCTGCTC 57.037 29.630 0.00 0.00 0.00 4.26
8271 11836 6.822667 TTCAGCTCAATAAAAATCTGCTCA 57.177 33.333 0.00 0.00 0.00 4.26
8272 11837 6.822667 TCAGCTCAATAAAAATCTGCTCAA 57.177 33.333 0.00 0.00 0.00 3.02
8273 11838 7.218228 TCAGCTCAATAAAAATCTGCTCAAA 57.782 32.000 0.00 0.00 0.00 2.69
8274 11839 7.660112 TCAGCTCAATAAAAATCTGCTCAAAA 58.340 30.769 0.00 0.00 0.00 2.44
8275 11840 7.596248 TCAGCTCAATAAAAATCTGCTCAAAAC 59.404 33.333 0.00 0.00 0.00 2.43
8276 11841 7.383029 CAGCTCAATAAAAATCTGCTCAAAACA 59.617 33.333 0.00 0.00 0.00 2.83
8277 11842 7.927629 AGCTCAATAAAAATCTGCTCAAAACAA 59.072 29.630 0.00 0.00 0.00 2.83
8278 11843 8.715088 GCTCAATAAAAATCTGCTCAAAACAAT 58.285 29.630 0.00 0.00 0.00 2.71
8370 11935 4.443457 GGAGCCAGAAACACATGCTCTATA 60.443 45.833 9.38 0.00 45.88 1.31
8389 11954 6.494952 TCTATAGGAGAACAAGGTGAAGACT 58.505 40.000 0.00 0.00 0.00 3.24
8390 11955 6.954684 TCTATAGGAGAACAAGGTGAAGACTT 59.045 38.462 0.00 0.00 0.00 3.01
8391 11956 4.344359 AGGAGAACAAGGTGAAGACTTC 57.656 45.455 8.34 8.34 0.00 3.01
8394 11959 4.311606 GAGAACAAGGTGAAGACTTCCTC 58.688 47.826 12.66 5.59 0.00 3.71
8396 11961 4.410555 AGAACAAGGTGAAGACTTCCTCTT 59.589 41.667 12.66 12.20 42.40 2.85
8408 11978 3.833070 GACTTCCTCTTCACCTTCCACTA 59.167 47.826 0.00 0.00 0.00 2.74
8457 12028 2.270986 CCCTTGTTCCTGCAGGCAC 61.271 63.158 28.91 27.61 34.44 5.01
8461 12032 0.036732 TTGTTCCTGCAGGCACTAGG 59.963 55.000 31.33 8.30 36.02 3.02
8464 12035 1.127567 TTCCTGCAGGCACTAGGTGT 61.128 55.000 28.91 0.00 36.02 4.16
8479 12050 5.063880 ACTAGGTGTGAAGACAACCAAATC 58.936 41.667 0.00 0.00 41.16 2.17
8480 12051 3.897239 AGGTGTGAAGACAACCAAATCA 58.103 40.909 0.00 0.00 41.16 2.57
8481 12052 3.885297 AGGTGTGAAGACAACCAAATCAG 59.115 43.478 0.00 0.00 41.16 2.90
8482 12053 3.882888 GGTGTGAAGACAACCAAATCAGA 59.117 43.478 0.00 0.00 33.17 3.27
8483 12054 4.520492 GGTGTGAAGACAACCAAATCAGAT 59.480 41.667 0.00 0.00 33.17 2.90
8484 12055 5.335191 GGTGTGAAGACAACCAAATCAGATC 60.335 44.000 0.00 0.00 33.17 2.75
8485 12056 5.239306 GTGTGAAGACAACCAAATCAGATCA 59.761 40.000 0.00 0.00 32.49 2.92
8486 12057 5.239306 TGTGAAGACAACCAAATCAGATCAC 59.761 40.000 0.00 0.00 35.30 3.06
8488 12059 5.827267 TGAAGACAACCAAATCAGATCACAA 59.173 36.000 0.00 0.00 0.00 3.33
8489 12060 6.320926 TGAAGACAACCAAATCAGATCACAAA 59.679 34.615 0.00 0.00 0.00 2.83
8491 12062 7.111247 AGACAACCAAATCAGATCACAAAAA 57.889 32.000 0.00 0.00 0.00 1.94
8518 12089 4.322650 GCACCAAAAATGCTCCAATAAGGA 60.323 41.667 0.00 0.00 45.91 3.36
8533 12104 8.055279 TCCAATAAGGAAGAACAATAAGCTTG 57.945 34.615 9.86 0.00 45.65 4.01
8534 12105 6.753744 CCAATAAGGAAGAACAATAAGCTTGC 59.246 38.462 9.86 0.00 41.22 4.01
8535 12106 4.790765 AAGGAAGAACAATAAGCTTGCC 57.209 40.909 9.86 0.00 31.35 4.52
8536 12107 3.766545 AGGAAGAACAATAAGCTTGCCA 58.233 40.909 9.86 0.00 31.35 4.92
8537 12108 4.151883 AGGAAGAACAATAAGCTTGCCAA 58.848 39.130 9.86 0.00 31.35 4.52
8538 12109 4.588528 AGGAAGAACAATAAGCTTGCCAAA 59.411 37.500 9.86 0.00 31.35 3.28
8539 12110 5.246883 AGGAAGAACAATAAGCTTGCCAAAT 59.753 36.000 9.86 0.00 31.35 2.32
8541 12112 4.824289 AGAACAATAAGCTTGCCAAATGG 58.176 39.130 9.86 0.00 38.53 3.16
8557 12128 2.672996 GGCAGGACGGCAACATGT 60.673 61.111 0.00 0.00 40.76 3.21
8559 12130 1.965930 GCAGGACGGCAACATGTGA 60.966 57.895 0.00 0.00 0.00 3.58
8560 12131 1.514678 GCAGGACGGCAACATGTGAA 61.515 55.000 0.00 0.00 0.00 3.18
8561 12132 0.518636 CAGGACGGCAACATGTGAAG 59.481 55.000 0.00 0.00 0.00 3.02
8563 12134 1.237285 GGACGGCAACATGTGAAGCT 61.237 55.000 15.14 0.00 0.00 3.74
8564 12135 1.438651 GACGGCAACATGTGAAGCTA 58.561 50.000 15.14 0.00 0.00 3.32
8565 12136 2.009774 GACGGCAACATGTGAAGCTAT 58.990 47.619 15.14 6.38 0.00 2.97
8566 12137 1.739466 ACGGCAACATGTGAAGCTATG 59.261 47.619 15.14 3.16 0.00 2.23
8567 12138 2.009051 CGGCAACATGTGAAGCTATGA 58.991 47.619 15.14 0.00 0.00 2.15
8570 12141 4.084171 CGGCAACATGTGAAGCTATGATAG 60.084 45.833 15.14 0.00 0.00 2.08
8573 12144 6.348295 GGCAACATGTGAAGCTATGATAGATG 60.348 42.308 15.14 0.00 0.00 2.90
8574 12145 6.426025 GCAACATGTGAAGCTATGATAGATGA 59.574 38.462 3.13 0.00 0.00 2.92
8575 12146 7.360185 GCAACATGTGAAGCTATGATAGATGAG 60.360 40.741 3.13 0.00 0.00 2.90
8577 12148 5.144692 TGTGAAGCTATGATAGATGAGGC 57.855 43.478 3.13 0.00 0.00 4.70
8578 12149 4.837298 TGTGAAGCTATGATAGATGAGGCT 59.163 41.667 3.13 0.00 0.00 4.58
8580 12151 6.494835 TGTGAAGCTATGATAGATGAGGCTAA 59.505 38.462 3.13 0.00 0.00 3.09
8582 12153 6.154192 TGAAGCTATGATAGATGAGGCTAAGG 59.846 42.308 3.13 0.00 0.00 2.69
8583 12154 4.961730 AGCTATGATAGATGAGGCTAAGGG 59.038 45.833 3.13 0.00 0.00 3.95
8585 12156 3.923273 TGATAGATGAGGCTAAGGGGA 57.077 47.619 0.00 0.00 0.00 4.81
8586 12157 3.511477 TGATAGATGAGGCTAAGGGGAC 58.489 50.000 0.00 0.00 0.00 4.46
8588 12159 2.095604 AGATGAGGCTAAGGGGACTC 57.904 55.000 0.00 0.00 42.68 3.36
8589 12160 0.676736 GATGAGGCTAAGGGGACTCG 59.323 60.000 0.00 0.00 43.89 4.18
8590 12161 0.760945 ATGAGGCTAAGGGGACTCGG 60.761 60.000 0.00 0.00 43.89 4.63
8592 12163 3.081409 GGCTAAGGGGACTCGGCA 61.081 66.667 0.00 0.00 42.68 5.69
8593 12164 2.501610 GCTAAGGGGACTCGGCAG 59.498 66.667 0.00 0.00 42.68 4.85
8594 12165 2.359967 GCTAAGGGGACTCGGCAGT 61.360 63.158 0.00 0.00 42.68 4.40
8609 12180 2.048222 AGTCGGCACACCACGATG 60.048 61.111 0.00 0.00 41.53 3.84
8610 12181 3.788766 GTCGGCACACCACGATGC 61.789 66.667 0.00 0.00 41.53 3.91
8614 12185 2.736682 GGCACACCACGATGCGTAC 61.737 63.158 0.00 0.00 43.02 3.67
8615 12186 2.024868 GCACACCACGATGCGTACA 61.025 57.895 0.00 0.00 38.32 2.90
8616 12187 1.779061 CACACCACGATGCGTACAC 59.221 57.895 0.00 0.00 38.32 2.90
8617 12188 1.373748 ACACCACGATGCGTACACC 60.374 57.895 0.00 0.00 38.32 4.16
8618 12189 2.098233 CACCACGATGCGTACACCC 61.098 63.158 0.00 0.00 38.32 4.61
8619 12190 2.263227 CCACGATGCGTACACCCA 59.737 61.111 0.00 0.00 38.32 4.51
8620 12191 1.153449 CCACGATGCGTACACCCAT 60.153 57.895 0.00 0.00 38.32 4.00
8622 12193 1.143183 ACGATGCGTACACCCATCC 59.857 57.895 10.70 0.00 38.73 3.51
8625 12196 0.874607 GATGCGTACACCCATCCGTC 60.875 60.000 6.82 0.00 33.43 4.79
8626 12197 2.581409 GCGTACACCCATCCGTCG 60.581 66.667 0.00 0.00 0.00 5.12
8627 12198 2.581409 CGTACACCCATCCGTCGC 60.581 66.667 0.00 0.00 0.00 5.19
8629 12200 1.226888 GTACACCCATCCGTCGCTC 60.227 63.158 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.926058 TTTCCTGGCCCAGTTATAGAC 57.074 47.619 10.47 0.00 0.00 2.59
36 37 3.041946 AGTGTTATTGGGCCCAAAACAA 58.958 40.909 38.43 30.66 37.95 2.83
37 38 2.683768 AGTGTTATTGGGCCCAAAACA 58.316 42.857 36.01 36.01 39.55 2.83
38 39 3.762407 AAGTGTTATTGGGCCCAAAAC 57.238 42.857 40.00 35.75 39.55 2.43
39 40 4.282195 CAGTAAGTGTTATTGGGCCCAAAA 59.718 41.667 40.00 29.04 39.55 2.44
40 41 3.829601 CAGTAAGTGTTATTGGGCCCAAA 59.170 43.478 40.00 25.41 39.55 3.28
50 51 5.512576 GGTCAACCAGTCCAGTAAGTGTTAT 60.513 44.000 0.00 0.00 35.64 1.89
82 83 0.175989 GCGTTCCTACTTCCTCCTGG 59.824 60.000 0.00 0.00 0.00 4.45
108 109 2.126228 TCGATGTGGACGAACGGC 60.126 61.111 0.00 0.00 36.84 5.68
121 122 1.140589 CGGCTGTTCTGCTCTCGAT 59.859 57.895 0.00 0.00 0.00 3.59
201 202 1.467713 CGAGCAGGTTAGACGAGGAAC 60.468 57.143 0.00 0.00 0.00 3.62
294 295 3.787001 CGGGTGGGAAGGAGAGGC 61.787 72.222 0.00 0.00 0.00 4.70
462 463 1.285023 GGTTGCTCACTTGCTGCTG 59.715 57.895 0.00 0.00 0.00 4.41
533 534 7.414436 ACAAAACTATGTGTGTGTTCATGTAC 58.586 34.615 0.00 0.00 30.82 2.90
542 543 5.743026 TGGTGTACAAAACTATGTGTGTG 57.257 39.130 0.00 0.00 34.75 3.82
543 544 6.952773 AATGGTGTACAAAACTATGTGTGT 57.047 33.333 0.00 0.00 34.75 3.72
559 560 5.580022 AGCTAATTAAGGTGGAAATGGTGT 58.420 37.500 0.00 0.00 33.68 4.16
560 561 6.530019 AAGCTAATTAAGGTGGAAATGGTG 57.470 37.500 0.00 0.00 35.65 4.17
561 562 8.838649 ATAAAGCTAATTAAGGTGGAAATGGT 57.161 30.769 0.00 0.00 35.65 3.55
611 612 8.883731 CCAAATCACAAAGAAATACGAGTAGAT 58.116 33.333 0.00 0.00 0.00 1.98
612 613 7.876068 ACCAAATCACAAAGAAATACGAGTAGA 59.124 33.333 0.00 0.00 0.00 2.59
613 614 8.029642 ACCAAATCACAAAGAAATACGAGTAG 57.970 34.615 0.00 0.00 0.00 2.57
614 615 7.972832 ACCAAATCACAAAGAAATACGAGTA 57.027 32.000 0.00 0.00 0.00 2.59
615 616 6.877611 ACCAAATCACAAAGAAATACGAGT 57.122 33.333 0.00 0.00 0.00 4.18
616 617 9.840427 AATTACCAAATCACAAAGAAATACGAG 57.160 29.630 0.00 0.00 0.00 4.18
626 627 9.239002 CGTTCAAACTAATTACCAAATCACAAA 57.761 29.630 0.00 0.00 0.00 2.83
628 629 7.932335 ACGTTCAAACTAATTACCAAATCACA 58.068 30.769 0.00 0.00 0.00 3.58
629 630 8.791355 AACGTTCAAACTAATTACCAAATCAC 57.209 30.769 0.00 0.00 0.00 3.06
630 631 8.622157 TGAACGTTCAAACTAATTACCAAATCA 58.378 29.630 27.94 0.00 33.55 2.57
631 632 8.898792 GTGAACGTTCAAACTAATTACCAAATC 58.101 33.333 31.20 9.85 39.21 2.17
632 633 8.407064 TGTGAACGTTCAAACTAATTACCAAAT 58.593 29.630 31.20 0.00 39.21 2.32
633 634 7.759465 TGTGAACGTTCAAACTAATTACCAAA 58.241 30.769 31.20 1.01 39.21 3.28
634 635 7.317842 TGTGAACGTTCAAACTAATTACCAA 57.682 32.000 31.20 1.70 39.21 3.67
635 636 6.922247 TGTGAACGTTCAAACTAATTACCA 57.078 33.333 31.20 17.80 39.21 3.25
637 638 8.065407 TGACATGTGAACGTTCAAACTAATTAC 58.935 33.333 31.20 16.21 39.21 1.89
638 639 8.144155 TGACATGTGAACGTTCAAACTAATTA 57.856 30.769 31.20 11.94 39.21 1.40
639 640 7.022055 TGACATGTGAACGTTCAAACTAATT 57.978 32.000 31.20 9.11 39.21 1.40
640 641 6.612247 TGACATGTGAACGTTCAAACTAAT 57.388 33.333 31.20 16.70 39.21 1.73
641 642 6.612247 ATGACATGTGAACGTTCAAACTAA 57.388 33.333 31.20 16.14 39.21 2.24
642 643 7.899178 ATATGACATGTGAACGTTCAAACTA 57.101 32.000 31.20 18.09 39.21 2.24
644 645 6.183359 GCAATATGACATGTGAACGTTCAAAC 60.183 38.462 31.20 20.37 39.21 2.93
646 647 5.181056 AGCAATATGACATGTGAACGTTCAA 59.819 36.000 31.20 20.94 39.21 2.69
647 648 4.694982 AGCAATATGACATGTGAACGTTCA 59.305 37.500 26.53 26.53 34.20 3.18
648 649 5.221891 AGCAATATGACATGTGAACGTTC 57.778 39.130 21.42 21.42 0.00 3.95
649 650 5.627499 AAGCAATATGACATGTGAACGTT 57.373 34.783 1.15 0.00 0.00 3.99
651 652 6.947258 TGATAAGCAATATGACATGTGAACG 58.053 36.000 1.15 0.00 0.00 3.95
653 654 8.510243 ACTTGATAAGCAATATGACATGTGAA 57.490 30.769 1.15 0.00 35.59 3.18
654 655 8.510243 AACTTGATAAGCAATATGACATGTGA 57.490 30.769 1.15 0.00 35.59 3.58
655 656 9.577110 AAAACTTGATAAGCAATATGACATGTG 57.423 29.630 1.15 0.00 35.59 3.21
656 657 9.577110 CAAAACTTGATAAGCAATATGACATGT 57.423 29.630 0.00 0.00 35.59 3.21
657 658 8.537223 GCAAAACTTGATAAGCAATATGACATG 58.463 33.333 0.00 0.00 35.59 3.21
658 659 8.252417 TGCAAAACTTGATAAGCAATATGACAT 58.748 29.630 0.00 0.00 35.59 3.06
659 660 7.541783 GTGCAAAACTTGATAAGCAATATGACA 59.458 33.333 0.00 0.00 35.59 3.58
660 661 7.541783 TGTGCAAAACTTGATAAGCAATATGAC 59.458 33.333 0.00 0.00 35.59 3.06
661 662 7.600960 TGTGCAAAACTTGATAAGCAATATGA 58.399 30.769 0.00 0.00 35.59 2.15
662 663 7.815398 TGTGCAAAACTTGATAAGCAATATG 57.185 32.000 0.00 0.00 35.59 1.78
663 664 8.252417 TGATGTGCAAAACTTGATAAGCAATAT 58.748 29.630 0.00 0.00 35.59 1.28
664 665 7.600960 TGATGTGCAAAACTTGATAAGCAATA 58.399 30.769 0.00 0.00 35.59 1.90
665 666 6.457355 TGATGTGCAAAACTTGATAAGCAAT 58.543 32.000 0.00 0.00 35.59 3.56
666 667 5.840715 TGATGTGCAAAACTTGATAAGCAA 58.159 33.333 0.00 0.00 33.37 3.91
667 668 5.450592 TGATGTGCAAAACTTGATAAGCA 57.549 34.783 0.00 0.00 0.00 3.91
668 669 6.956299 AATGATGTGCAAAACTTGATAAGC 57.044 33.333 0.00 0.00 0.00 3.09
669 670 8.644619 CAGAAATGATGTGCAAAACTTGATAAG 58.355 33.333 0.00 0.00 0.00 1.73
683 684 5.067413 AGCTAATTGAGGCAGAAATGATGTG 59.933 40.000 0.00 0.00 0.00 3.21
774 775 9.210329 TCAATTGATAAGCAACGTTCTAACTAA 57.790 29.630 3.38 0.00 39.78 2.24
775 776 8.653338 GTCAATTGATAAGCAACGTTCTAACTA 58.347 33.333 12.12 0.00 39.78 2.24
778 779 7.428282 TGTCAATTGATAAGCAACGTTCTAA 57.572 32.000 12.12 0.00 39.78 2.10
779 780 7.041712 TGTTGTCAATTGATAAGCAACGTTCTA 60.042 33.333 23.62 11.23 39.78 2.10
780 781 5.940192 TGTCAATTGATAAGCAACGTTCT 57.060 34.783 12.12 0.00 39.78 3.01
781 782 5.912396 TGTTGTCAATTGATAAGCAACGTTC 59.088 36.000 23.62 10.93 39.78 3.95
782 783 5.826586 TGTTGTCAATTGATAAGCAACGTT 58.173 33.333 23.62 0.00 39.78 3.99
783 784 5.431420 TGTTGTCAATTGATAAGCAACGT 57.569 34.783 23.62 0.00 39.78 3.99
784 785 4.853196 CCTGTTGTCAATTGATAAGCAACG 59.147 41.667 23.62 19.50 39.78 4.10
785 786 4.622740 GCCTGTTGTCAATTGATAAGCAAC 59.377 41.667 23.01 23.01 39.78 4.17
786 787 4.280425 TGCCTGTTGTCAATTGATAAGCAA 59.720 37.500 20.51 13.80 41.53 3.91
787 788 3.825585 TGCCTGTTGTCAATTGATAAGCA 59.174 39.130 19.53 19.53 0.00 3.91
789 790 5.048504 ACACTGCCTGTTGTCAATTGATAAG 60.049 40.000 16.89 7.29 0.00 1.73
790 791 4.826733 ACACTGCCTGTTGTCAATTGATAA 59.173 37.500 12.12 12.62 0.00 1.75
791 792 4.397420 ACACTGCCTGTTGTCAATTGATA 58.603 39.130 12.12 6.04 0.00 2.15
792 793 3.225104 ACACTGCCTGTTGTCAATTGAT 58.775 40.909 12.12 0.00 0.00 2.57
794 795 3.441496 AACACTGCCTGTTGTCAATTG 57.559 42.857 0.00 0.00 41.87 2.32
796 797 5.789643 ATAAAACACTGCCTGTTGTCAAT 57.210 34.783 0.00 0.00 42.70 2.57
797 798 6.264292 ACATATAAAACACTGCCTGTTGTCAA 59.736 34.615 0.00 0.00 42.70 3.18
798 799 5.767665 ACATATAAAACACTGCCTGTTGTCA 59.232 36.000 0.00 0.00 42.70 3.58
799 800 6.254281 ACATATAAAACACTGCCTGTTGTC 57.746 37.500 0.00 0.00 42.70 3.18
800 801 6.712998 TGTACATATAAAACACTGCCTGTTGT 59.287 34.615 0.00 0.00 42.70 3.32
801 802 7.021196 GTGTACATATAAAACACTGCCTGTTG 58.979 38.462 0.00 0.00 42.70 3.33
804 805 5.880332 AGGTGTACATATAAAACACTGCCTG 59.120 40.000 0.00 0.00 42.46 4.85
805 806 6.062258 AGGTGTACATATAAAACACTGCCT 57.938 37.500 0.00 0.00 42.46 4.75
806 807 7.046033 ACTAGGTGTACATATAAAACACTGCC 58.954 38.462 0.00 0.00 42.46 4.85
928 929 6.068670 AGCTAAAATACCACTGGTCAAAACT 58.931 36.000 3.21 0.00 37.09 2.66
1083 1084 1.137282 GGGGAAGAATCAGAGTCCGAC 59.863 57.143 0.00 0.00 0.00 4.79
1106 1107 0.107116 GCTAGGAGAGGAGTCCGACA 60.107 60.000 2.76 0.00 42.05 4.35
1108 1109 1.532728 GGCTAGGAGAGGAGTCCGA 59.467 63.158 2.76 0.00 42.05 4.55
1561 1562 1.098050 CCACTTCAGCTGTAATGGCC 58.902 55.000 14.67 0.00 0.00 5.36
1923 1927 5.505173 AATGTGCATGTAATAAGTGAGCC 57.495 39.130 0.00 0.00 0.00 4.70
2212 2223 7.322664 TGAAAAGTTTCTTCAAATGCTTCACT 58.677 30.769 5.45 0.00 38.02 3.41
2220 2231 7.506938 TCAGGGATCTGAAAAGTTTCTTCAAAT 59.493 33.333 5.45 0.00 46.08 2.32
2605 2616 4.370094 ACGGACAATTTACCCAAACCTA 57.630 40.909 0.00 0.00 0.00 3.08
2717 2802 4.092091 CGAAAGAACAAGAAAGAGGATCCG 59.908 45.833 5.98 0.00 33.66 4.18
2858 2943 4.088496 GCGTTGAAAATAACATGTGACTGC 59.912 41.667 0.00 0.00 0.00 4.40
2908 2993 8.919145 ACAAAACCTTGTTGGACTATAATTGAA 58.081 29.630 0.00 0.00 43.45 2.69
3028 3113 8.073768 AGTAACAAATCACAAGGTCATAAAACG 58.926 33.333 0.00 0.00 0.00 3.60
3107 3192 4.067896 ACATAAAACAGTGCTGAGTGAGG 58.932 43.478 6.17 0.00 0.00 3.86
3112 3197 4.732285 ACGAACATAAAACAGTGCTGAG 57.268 40.909 6.17 0.00 0.00 3.35
3260 3345 1.986378 CGCTGAAAGTGTACCTCTTCG 59.014 52.381 0.00 0.00 40.27 3.79
3627 3722 7.495279 AGCAAACTGAATAAACAAAAAGCATGA 59.505 29.630 0.00 0.00 0.00 3.07
3816 3911 2.687935 CAAATTGGGGTCCCGATAACAG 59.312 50.000 9.11 0.00 39.21 3.16
3891 3986 4.592942 AGCCAGCTAAACATTCAGAATCA 58.407 39.130 0.00 0.00 0.00 2.57
3951 4046 5.407407 GGAAAGACTCAAGTATGTCCTGA 57.593 43.478 6.73 0.00 39.85 3.86
3955 4050 7.548097 TGTGATAGGAAAGACTCAAGTATGTC 58.452 38.462 0.00 0.00 0.00 3.06
3956 4051 7.482169 TGTGATAGGAAAGACTCAAGTATGT 57.518 36.000 0.00 0.00 0.00 2.29
3957 4052 9.469807 GTATGTGATAGGAAAGACTCAAGTATG 57.530 37.037 0.00 0.00 0.00 2.39
4365 4555 5.447757 TGATATGGGCTCATTTCATGACAA 58.552 37.500 14.88 0.00 36.76 3.18
4540 4730 2.754946 ACAAAGGGCAATGCATTGAG 57.245 45.000 37.36 21.58 40.14 3.02
4852 5042 1.138069 TGCTCACCGACTTCAGTGAAA 59.862 47.619 7.06 0.00 42.19 2.69
4921 5111 3.195825 ACTTCAGGGTAAGTGATTCTCGG 59.804 47.826 0.00 0.00 38.28 4.63
4957 5147 3.540314 AGCTTGCTCAATACAGGAGAG 57.460 47.619 0.00 0.00 34.24 3.20
5000 5190 4.996758 GGCTGACAAATAACAAGGCAAAAT 59.003 37.500 0.00 0.00 0.00 1.82
5434 5624 4.651503 TCCTTCCACCAAACTTAAAATGCA 59.348 37.500 0.00 0.00 0.00 3.96
5435 5625 4.988540 GTCCTTCCACCAAACTTAAAATGC 59.011 41.667 0.00 0.00 0.00 3.56
5470 5660 2.299326 AGCAGGCCAAAATCAAGAGT 57.701 45.000 5.01 0.00 0.00 3.24
5471 5661 4.441079 CCATTAGCAGGCCAAAATCAAGAG 60.441 45.833 5.01 0.00 0.00 2.85
5593 5783 4.441792 TCTGCAAGCATCGCTATTCTTAA 58.558 39.130 0.00 0.00 38.25 1.85
5725 5916 8.486210 AGCTAAGTAATTCCTGACATCACATAA 58.514 33.333 0.00 0.00 0.00 1.90
5758 5949 5.644644 CACAAAATATCAGTTGAGAAGGGC 58.355 41.667 0.00 0.00 0.00 5.19
5790 5981 3.657634 GCCTCTCTGCGATCAATGATAA 58.342 45.455 0.00 0.00 0.00 1.75
5878 6069 3.691609 AGAAAGGCGATCTTGACAAATCC 59.308 43.478 0.00 0.00 35.55 3.01
6008 6202 7.055378 TGTGTTGTTAGTGGTACCTTGTAATT 58.945 34.615 14.36 0.00 0.00 1.40
6142 6336 6.954102 TCCATAACTAGAGCAGCATATAAGGA 59.046 38.462 0.00 0.00 0.00 3.36
6304 6498 9.447279 TGAAAAGAATATCTATGGTAGGAAGGA 57.553 33.333 0.00 0.00 0.00 3.36
6389 6584 7.445096 TCTTCACTTTTCACAATTATCTGCTGA 59.555 33.333 0.00 0.00 0.00 4.26
6468 6663 4.947388 TGTTTATCAGGGAATGTAAGTGCC 59.053 41.667 0.00 0.00 45.48 5.01
6677 6875 5.012561 CCCACCATGAAAGGTAAAATCCAAA 59.987 40.000 0.00 0.00 40.77 3.28
6678 6876 4.530161 CCCACCATGAAAGGTAAAATCCAA 59.470 41.667 0.00 0.00 40.77 3.53
6679 6877 4.093011 CCCACCATGAAAGGTAAAATCCA 58.907 43.478 0.00 0.00 40.77 3.41
6698 6896 2.192861 CCAAGCTCAAACGCACCCA 61.193 57.895 0.00 0.00 0.00 4.51
6831 7029 3.947196 GTGGCAATGTAGTCATCCATTCA 59.053 43.478 0.00 0.00 32.88 2.57
6919 7117 6.316890 ACAAACATGTAACAAGTACCGTTTCT 59.683 34.615 0.00 0.00 36.17 2.52
7020 7343 1.145377 ACTTGTGTCACCACGTCCC 59.855 57.895 0.00 0.00 44.92 4.46
7192 7515 4.318689 CGCCAAAAACTGCTGGTATTTTTG 60.319 41.667 16.83 16.83 46.02 2.44
7253 7576 8.995220 TCACCAGTAGTACATAATTGTTTTCAC 58.005 33.333 2.52 0.00 37.28 3.18
7264 7587 9.981114 CATTGACATTATCACCAGTAGTACATA 57.019 33.333 2.52 0.00 36.92 2.29
7403 7734 2.098607 CACAAGAGATACCGACCGCTTA 59.901 50.000 0.00 0.00 0.00 3.09
7642 7976 1.404047 GCCTCAAGCAGAGTCTGACTC 60.404 57.143 26.43 26.43 45.38 3.36
7664 7998 2.891941 TTAGGGCATGCTCCTTGGCG 62.892 60.000 26.32 0.00 40.34 5.69
7667 8001 3.567164 CACTAATTAGGGCATGCTCCTTG 59.433 47.826 26.32 16.38 35.92 3.61
7668 8002 3.435601 CCACTAATTAGGGCATGCTCCTT 60.436 47.826 26.32 15.57 35.92 3.36
7686 8031 2.540842 ATACCCTGGTACCGGCCACT 62.541 60.000 15.96 0.00 34.36 4.00
7693 8038 3.483421 GCCAAATACATACCCTGGTACC 58.517 50.000 4.43 4.43 33.01 3.34
7719 8064 1.302511 CCCTAGCAACACTGGCGTT 60.303 57.895 0.00 0.00 36.08 4.84
7758 8104 6.183360 CGTATAGCAAATGTCACAAACCTCAT 60.183 38.462 0.00 0.00 0.00 2.90
7787 8133 2.694628 TCCAGAAAACAACATGCAAGCT 59.305 40.909 0.00 0.00 0.00 3.74
7788 8134 3.054878 CTCCAGAAAACAACATGCAAGC 58.945 45.455 0.00 0.00 0.00 4.01
7789 8135 4.276678 TCTCTCCAGAAAACAACATGCAAG 59.723 41.667 0.00 0.00 0.00 4.01
7790 8136 4.206375 TCTCTCCAGAAAACAACATGCAA 58.794 39.130 0.00 0.00 0.00 4.08
7792 8138 3.365767 GCTCTCTCCAGAAAACAACATGC 60.366 47.826 0.00 0.00 0.00 4.06
7795 8141 3.134623 TCAGCTCTCTCCAGAAAACAACA 59.865 43.478 0.00 0.00 0.00 3.33
7796 8142 3.733337 TCAGCTCTCTCCAGAAAACAAC 58.267 45.455 0.00 0.00 0.00 3.32
7797 8143 4.141620 ACTTCAGCTCTCTCCAGAAAACAA 60.142 41.667 0.00 0.00 0.00 2.83
7822 8173 7.155328 AGCAAAACCCTTCTATATGTATCGAG 58.845 38.462 0.00 0.00 0.00 4.04
7825 8176 8.345565 CACAAGCAAAACCCTTCTATATGTATC 58.654 37.037 0.00 0.00 0.00 2.24
7864 8777 5.585047 CCTAGGGTTGTTATACAGCTTGAAC 59.415 44.000 0.00 0.00 29.63 3.18
7865 8778 5.249852 ACCTAGGGTTGTTATACAGCTTGAA 59.750 40.000 14.81 0.00 27.29 2.69
7866 8779 4.781087 ACCTAGGGTTGTTATACAGCTTGA 59.219 41.667 14.81 0.00 27.29 3.02
7867 8780 5.099042 ACCTAGGGTTGTTATACAGCTTG 57.901 43.478 14.81 0.00 27.29 4.01
7868 8781 5.365895 CCTACCTAGGGTTGTTATACAGCTT 59.634 44.000 14.81 0.00 39.86 3.74
7869 8782 4.900054 CCTACCTAGGGTTGTTATACAGCT 59.100 45.833 14.81 0.00 39.86 4.24
7870 8783 5.211174 CCTACCTAGGGTTGTTATACAGC 57.789 47.826 14.81 0.00 39.86 4.40
7908 11456 2.350498 GTCTTCGCGCTAGGCAAAAATA 59.650 45.455 5.56 0.00 43.84 1.40
7921 11469 0.382158 TCAGAGCATAGGTCTTCGCG 59.618 55.000 0.00 0.00 38.40 5.87
7937 11485 8.844244 CCATTATTCCATCCTTTTAAGTCTCAG 58.156 37.037 0.00 0.00 0.00 3.35
7950 11499 8.993424 AGGATAGTATACACCATTATTCCATCC 58.007 37.037 5.50 0.00 0.00 3.51
7963 11512 7.121463 ACAGTAGCATAGCAGGATAGTATACAC 59.879 40.741 5.50 0.00 0.00 2.90
8030 11594 6.437162 ACCTAACCAATGCATACTTCATTGTT 59.563 34.615 0.00 10.00 45.57 2.83
8041 11605 4.858850 TCTCAATCACCTAACCAATGCAT 58.141 39.130 0.00 0.00 0.00 3.96
8053 11617 4.036734 TCACTTGCAAAACTCTCAATCACC 59.963 41.667 0.00 0.00 0.00 4.02
8065 11629 4.734398 ATGACACCTTTCACTTGCAAAA 57.266 36.364 0.00 0.00 0.00 2.44
8083 11648 5.067273 ACAAATGGACTAAACGACCAATGA 58.933 37.500 0.00 0.00 40.74 2.57
8085 11650 6.150474 CCTAACAAATGGACTAAACGACCAAT 59.850 38.462 0.00 0.00 40.74 3.16
8087 11652 4.998672 CCTAACAAATGGACTAAACGACCA 59.001 41.667 0.00 0.00 41.58 4.02
8088 11653 4.142752 GCCTAACAAATGGACTAAACGACC 60.143 45.833 0.00 0.00 0.00 4.79
8089 11654 4.694037 AGCCTAACAAATGGACTAAACGAC 59.306 41.667 0.00 0.00 0.00 4.34
8090 11655 4.901868 AGCCTAACAAATGGACTAAACGA 58.098 39.130 0.00 0.00 0.00 3.85
8091 11656 5.622770 AAGCCTAACAAATGGACTAAACG 57.377 39.130 0.00 0.00 0.00 3.60
8092 11657 6.657966 AGGTAAGCCTAACAAATGGACTAAAC 59.342 38.462 0.00 0.00 44.90 2.01
8094 11659 6.013206 TCAGGTAAGCCTAACAAATGGACTAA 60.013 38.462 0.00 0.00 44.97 2.24
8095 11660 5.486063 TCAGGTAAGCCTAACAAATGGACTA 59.514 40.000 0.00 0.00 44.97 2.59
8096 11661 4.288626 TCAGGTAAGCCTAACAAATGGACT 59.711 41.667 0.00 0.00 44.97 3.85
8097 11662 4.585879 TCAGGTAAGCCTAACAAATGGAC 58.414 43.478 0.00 0.00 44.97 4.02
8098 11663 4.919774 TCAGGTAAGCCTAACAAATGGA 57.080 40.909 0.00 0.00 44.97 3.41
8099 11664 5.418840 ACATTCAGGTAAGCCTAACAAATGG 59.581 40.000 9.18 0.00 44.97 3.16
8100 11665 6.515272 ACATTCAGGTAAGCCTAACAAATG 57.485 37.500 4.73 4.73 44.97 2.32
8102 11667 6.969993 AAACATTCAGGTAAGCCTAACAAA 57.030 33.333 0.00 0.00 44.97 2.83
8105 11670 6.315642 GGACTAAACATTCAGGTAAGCCTAAC 59.684 42.308 0.00 0.00 44.97 2.34
8106 11671 6.013206 TGGACTAAACATTCAGGTAAGCCTAA 60.013 38.462 0.00 0.00 44.97 2.69
8107 11672 5.486063 TGGACTAAACATTCAGGTAAGCCTA 59.514 40.000 0.00 0.00 44.97 3.93
8108 11673 6.524192 AATGGACTAAACATTCAGGTAAGCCT 60.524 38.462 0.00 0.00 37.04 4.58
8109 11674 4.585879 TGGACTAAACATTCAGGTAAGCC 58.414 43.478 0.00 0.00 0.00 4.35
8110 11675 6.759497 AATGGACTAAACATTCAGGTAAGC 57.241 37.500 0.00 0.00 33.51 3.09
8111 11676 8.110860 ACAAATGGACTAAACATTCAGGTAAG 57.889 34.615 0.00 0.00 37.55 2.34
8112 11677 8.472007 AACAAATGGACTAAACATTCAGGTAA 57.528 30.769 0.00 0.00 37.55 2.85
8113 11678 9.226606 CTAACAAATGGACTAAACATTCAGGTA 57.773 33.333 0.00 0.00 37.55 3.08
8114 11679 6.976934 AACAAATGGACTAAACATTCAGGT 57.023 33.333 0.00 0.00 37.55 4.00
8115 11680 7.538575 CCTAACAAATGGACTAAACATTCAGG 58.461 38.462 0.00 0.00 37.55 3.86
8116 11681 7.029563 GCCTAACAAATGGACTAAACATTCAG 58.970 38.462 0.00 0.00 37.55 3.02
8117 11682 6.719370 AGCCTAACAAATGGACTAAACATTCA 59.281 34.615 0.00 0.00 37.55 2.57
8118 11683 7.158099 AGCCTAACAAATGGACTAAACATTC 57.842 36.000 0.00 0.00 37.55 2.67
8119 11684 7.539034 AAGCCTAACAAATGGACTAAACATT 57.461 32.000 0.00 0.00 40.07 2.71
8120 11685 7.122204 GGTAAGCCTAACAAATGGACTAAACAT 59.878 37.037 0.00 0.00 0.00 2.71
8121 11686 6.431852 GGTAAGCCTAACAAATGGACTAAACA 59.568 38.462 0.00 0.00 0.00 2.83
8122 11687 6.657966 AGGTAAGCCTAACAAATGGACTAAAC 59.342 38.462 0.00 0.00 44.90 2.01
8123 11688 6.657541 CAGGTAAGCCTAACAAATGGACTAAA 59.342 38.462 0.00 0.00 44.97 1.85
8124 11689 6.013206 TCAGGTAAGCCTAACAAATGGACTAA 60.013 38.462 0.00 0.00 44.97 2.24
8125 11690 5.486063 TCAGGTAAGCCTAACAAATGGACTA 59.514 40.000 0.00 0.00 44.97 2.59
8126 11691 4.288626 TCAGGTAAGCCTAACAAATGGACT 59.711 41.667 0.00 0.00 44.97 3.85
8127 11692 4.585879 TCAGGTAAGCCTAACAAATGGAC 58.414 43.478 0.00 0.00 44.97 4.02
8128 11693 4.919774 TCAGGTAAGCCTAACAAATGGA 57.080 40.909 0.00 0.00 44.97 3.41
8129 11694 5.418840 ACATTCAGGTAAGCCTAACAAATGG 59.581 40.000 9.18 0.00 44.97 3.16
8149 11714 8.773404 ACTGACTAAAAGATACGCTTAACATT 57.227 30.769 0.00 0.00 35.24 2.71
8191 11756 3.887716 GGGTGCAGAATGAGCTTATCAAT 59.112 43.478 0.00 0.00 42.53 2.57
8201 11766 0.994247 ACTCCATGGGTGCAGAATGA 59.006 50.000 13.02 0.00 39.69 2.57
8247 11812 7.400599 TGAGCAGATTTTTATTGAGCTGAAT 57.599 32.000 3.30 3.30 0.00 2.57
8248 11813 6.822667 TGAGCAGATTTTTATTGAGCTGAA 57.177 33.333 0.00 0.00 0.00 3.02
8249 11814 6.822667 TTGAGCAGATTTTTATTGAGCTGA 57.177 33.333 0.00 0.00 0.00 4.26
8250 11815 7.383029 TGTTTTGAGCAGATTTTTATTGAGCTG 59.617 33.333 0.00 0.00 0.00 4.24
8251 11816 7.436118 TGTTTTGAGCAGATTTTTATTGAGCT 58.564 30.769 0.00 0.00 0.00 4.09
8252 11817 7.642071 TGTTTTGAGCAGATTTTTATTGAGC 57.358 32.000 0.00 0.00 0.00 4.26
8294 11859 8.962679 CAACTTGCCCTTATATACCTTTGTTAA 58.037 33.333 0.00 0.00 0.00 2.01
8313 11878 0.249031 GCCAGTGGTCAACAACTTGC 60.249 55.000 11.74 0.00 0.00 4.01
8315 11880 1.846007 TTGCCAGTGGTCAACAACTT 58.154 45.000 11.74 0.00 0.00 2.66
8328 11893 3.424703 TCCATCTTCCTTCTTTTGCCAG 58.575 45.455 0.00 0.00 0.00 4.85
8329 11894 3.424703 CTCCATCTTCCTTCTTTTGCCA 58.575 45.455 0.00 0.00 0.00 4.92
8370 11935 3.071747 GGAAGTCTTCACCTTGTTCTCCT 59.928 47.826 14.49 0.00 0.00 3.69
8389 11954 5.165961 CATTAGTGGAAGGTGAAGAGGAA 57.834 43.478 0.00 0.00 0.00 3.36
8390 11955 4.826274 CATTAGTGGAAGGTGAAGAGGA 57.174 45.455 0.00 0.00 0.00 3.71
8457 12028 5.063204 TGATTTGGTTGTCTTCACACCTAG 58.937 41.667 0.00 0.00 29.76 3.02
8461 12032 5.239306 TGATCTGATTTGGTTGTCTTCACAC 59.761 40.000 0.00 0.00 29.76 3.82
8464 12035 5.375773 TGTGATCTGATTTGGTTGTCTTCA 58.624 37.500 0.00 0.00 0.00 3.02
8496 12067 5.404466 TCCTTATTGGAGCATTTTTGGTG 57.596 39.130 0.00 0.00 40.56 4.17
8509 12080 6.753744 GCAAGCTTATTGTTCTTCCTTATTGG 59.246 38.462 0.00 0.00 37.10 3.16
8510 12081 6.753744 GGCAAGCTTATTGTTCTTCCTTATTG 59.246 38.462 0.00 0.00 0.00 1.90
8511 12082 6.437162 TGGCAAGCTTATTGTTCTTCCTTATT 59.563 34.615 0.00 0.00 0.00 1.40
8512 12083 5.951747 TGGCAAGCTTATTGTTCTTCCTTAT 59.048 36.000 0.00 0.00 0.00 1.73
8513 12084 5.321102 TGGCAAGCTTATTGTTCTTCCTTA 58.679 37.500 0.00 0.00 0.00 2.69
8515 12086 3.766545 TGGCAAGCTTATTGTTCTTCCT 58.233 40.909 0.00 0.00 0.00 3.36
8516 12087 4.519540 TTGGCAAGCTTATTGTTCTTCC 57.480 40.909 0.00 0.00 0.00 3.46
8518 12089 5.240121 CCATTTGGCAAGCTTATTGTTCTT 58.760 37.500 0.00 0.00 0.00 2.52
8534 12105 2.274645 TTGCCGTCCTGCCATTTGG 61.275 57.895 0.00 0.00 38.53 3.28
8535 12106 1.080569 GTTGCCGTCCTGCCATTTG 60.081 57.895 0.00 0.00 0.00 2.32
8536 12107 0.899717 ATGTTGCCGTCCTGCCATTT 60.900 50.000 0.00 0.00 0.00 2.32
8537 12108 1.304381 ATGTTGCCGTCCTGCCATT 60.304 52.632 0.00 0.00 0.00 3.16
8538 12109 2.048023 CATGTTGCCGTCCTGCCAT 61.048 57.895 0.00 0.00 0.00 4.40
8539 12110 2.672651 CATGTTGCCGTCCTGCCA 60.673 61.111 0.00 0.00 0.00 4.92
8541 12112 1.514678 TTCACATGTTGCCGTCCTGC 61.515 55.000 0.00 0.00 0.00 4.85
8542 12113 0.518636 CTTCACATGTTGCCGTCCTG 59.481 55.000 0.00 0.00 0.00 3.86
8544 12115 1.210155 GCTTCACATGTTGCCGTCC 59.790 57.895 0.00 0.00 0.00 4.79
8546 12117 1.739466 CATAGCTTCACATGTTGCCGT 59.261 47.619 0.00 0.00 0.00 5.68
8548 12119 5.059161 TCTATCATAGCTTCACATGTTGCC 58.941 41.667 0.00 0.00 0.00 4.52
8549 12120 6.426025 TCATCTATCATAGCTTCACATGTTGC 59.574 38.462 0.00 0.93 0.00 4.17
8550 12121 7.117956 CCTCATCTATCATAGCTTCACATGTTG 59.882 40.741 0.00 0.00 0.00 3.33
8551 12122 7.160049 CCTCATCTATCATAGCTTCACATGTT 58.840 38.462 0.00 0.00 0.00 2.71
8552 12123 6.699366 CCTCATCTATCATAGCTTCACATGT 58.301 40.000 0.00 0.00 0.00 3.21
8553 12124 5.581479 GCCTCATCTATCATAGCTTCACATG 59.419 44.000 0.00 0.00 0.00 3.21
8554 12125 5.484644 AGCCTCATCTATCATAGCTTCACAT 59.515 40.000 0.00 0.00 0.00 3.21
8555 12126 4.837298 AGCCTCATCTATCATAGCTTCACA 59.163 41.667 0.00 0.00 0.00 3.58
8556 12127 5.404466 AGCCTCATCTATCATAGCTTCAC 57.596 43.478 0.00 0.00 0.00 3.18
8557 12128 6.154192 CCTTAGCCTCATCTATCATAGCTTCA 59.846 42.308 0.00 0.00 0.00 3.02
8559 12130 5.424895 CCCTTAGCCTCATCTATCATAGCTT 59.575 44.000 0.00 0.00 0.00 3.74
8560 12131 4.961730 CCCTTAGCCTCATCTATCATAGCT 59.038 45.833 0.00 0.00 0.00 3.32
8561 12132 4.100808 CCCCTTAGCCTCATCTATCATAGC 59.899 50.000 0.00 0.00 0.00 2.97
8563 12134 5.016782 AGTCCCCTTAGCCTCATCTATCATA 59.983 44.000 0.00 0.00 0.00 2.15
8564 12135 4.100373 GTCCCCTTAGCCTCATCTATCAT 58.900 47.826 0.00 0.00 0.00 2.45
8565 12136 3.142977 AGTCCCCTTAGCCTCATCTATCA 59.857 47.826 0.00 0.00 0.00 2.15
8566 12137 3.767131 GAGTCCCCTTAGCCTCATCTATC 59.233 52.174 0.00 0.00 0.00 2.08
8567 12138 3.785364 GAGTCCCCTTAGCCTCATCTAT 58.215 50.000 0.00 0.00 0.00 1.98
8570 12141 0.676736 CGAGTCCCCTTAGCCTCATC 59.323 60.000 0.00 0.00 0.00 2.92
8573 12144 2.798364 GCCGAGTCCCCTTAGCCTC 61.798 68.421 0.00 0.00 0.00 4.70
8574 12145 2.764547 GCCGAGTCCCCTTAGCCT 60.765 66.667 0.00 0.00 0.00 4.58
8575 12146 3.081409 TGCCGAGTCCCCTTAGCC 61.081 66.667 0.00 0.00 0.00 3.93
8577 12148 1.817209 GACTGCCGAGTCCCCTTAG 59.183 63.158 0.00 0.00 42.66 2.18
8578 12149 2.050350 CGACTGCCGAGTCCCCTTA 61.050 63.158 0.00 0.00 45.27 2.69
8585 12156 4.664677 GTGTGCCGACTGCCGAGT 62.665 66.667 0.00 0.00 41.76 4.18
8590 12161 4.961511 TCGTGGTGTGCCGACTGC 62.962 66.667 0.00 0.00 41.77 4.40
8592 12163 2.048222 CATCGTGGTGTGCCGACT 60.048 61.111 0.00 0.00 35.69 4.18
8593 12164 3.788766 GCATCGTGGTGTGCCGAC 61.789 66.667 0.00 0.00 35.69 4.79
8597 12168 2.024868 TGTACGCATCGTGGTGTGC 61.025 57.895 1.77 5.11 41.39 4.57
8598 12169 1.623081 GGTGTACGCATCGTGGTGTG 61.623 60.000 8.97 0.00 41.39 3.82
8600 12171 2.098233 GGGTGTACGCATCGTGGTG 61.098 63.158 8.97 0.00 41.39 4.17
8601 12172 1.895020 ATGGGTGTACGCATCGTGGT 61.895 55.000 8.97 0.00 44.79 4.16
8602 12173 1.153449 ATGGGTGTACGCATCGTGG 60.153 57.895 8.97 0.00 44.79 4.94
8603 12174 4.513519 ATGGGTGTACGCATCGTG 57.486 55.556 8.97 0.00 44.79 4.35
8609 12180 2.581409 CGACGGATGGGTGTACGC 60.581 66.667 0.00 0.00 0.00 4.42
8610 12181 2.581409 GCGACGGATGGGTGTACG 60.581 66.667 0.00 0.00 0.00 3.67
8611 12182 1.226888 GAGCGACGGATGGGTGTAC 60.227 63.158 0.00 0.00 0.00 2.90
8612 12183 2.767445 CGAGCGACGGATGGGTGTA 61.767 63.158 0.00 0.00 38.46 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.