Multiple sequence alignment - TraesCS2D01G497800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G497800 chr2D 100.000 7200 0 0 1 7200 593503017 593510216 0.000000e+00 13296.0
1 TraesCS2D01G497800 chr2D 96.364 165 6 0 193 357 362930971 362930807 9.200000e-69 272.0
2 TraesCS2D01G497800 chr2D 98.214 112 2 0 1 112 176655533 176655644 5.700000e-46 196.0
3 TraesCS2D01G497800 chr2D 97.143 35 1 0 2635 2669 593505621 593505655 7.800000e-05 60.2
4 TraesCS2D01G497800 chr2D 97.143 35 1 0 2605 2639 593505651 593505685 7.800000e-05 60.2
5 TraesCS2D01G497800 chr2A 93.102 2015 97 23 432 2422 728398577 728400573 0.000000e+00 2913.0
6 TraesCS2D01G497800 chr2A 91.823 2030 94 32 5224 7200 728403986 728405996 0.000000e+00 2763.0
7 TraesCS2D01G497800 chr2A 90.576 1772 84 33 3525 5230 728402193 728403947 0.000000e+00 2270.0
8 TraesCS2D01G497800 chr2A 91.111 945 57 10 2542 3461 728401027 728401969 0.000000e+00 1254.0
9 TraesCS2D01G497800 chr2A 91.176 272 17 2 2277 2541 728400508 728400779 5.310000e-96 363.0
10 TraesCS2D01G497800 chr2A 94.886 176 9 0 190 365 606381414 606381239 7.110000e-70 276.0
11 TraesCS2D01G497800 chr2A 96.970 66 2 0 2357 2422 728400421 728400486 2.120000e-20 111.0
12 TraesCS2D01G497800 chr2A 87.097 93 5 3 112 197 728398482 728398574 1.650000e-16 99.0
13 TraesCS2D01G497800 chr2A 100.000 35 0 0 2635 2669 728401090 728401124 1.680000e-06 65.8
14 TraesCS2D01G497800 chr2B 94.711 1834 69 18 414 2231 719959147 719960968 0.000000e+00 2824.0
15 TraesCS2D01G497800 chr2B 91.690 1757 88 18 5226 6937 719964160 719965903 0.000000e+00 2383.0
16 TraesCS2D01G497800 chr2B 96.575 905 25 3 3824 4727 719962837 719963736 0.000000e+00 1495.0
17 TraesCS2D01G497800 chr2B 94.909 550 17 4 3286 3826 719962167 719962714 0.000000e+00 850.0
18 TraesCS2D01G497800 chr2B 96.474 312 11 0 4919 5230 719963808 719964119 3.850000e-142 516.0
19 TraesCS2D01G497800 chr2B 97.952 293 5 1 2965 3257 719961875 719962166 2.320000e-139 507.0
20 TraesCS2D01G497800 chr2B 96.970 198 6 0 2344 2541 719960976 719961173 4.160000e-87 333.0
21 TraesCS2D01G497800 chr2B 89.961 259 14 4 6946 7200 719965972 719966222 2.510000e-84 324.0
22 TraesCS2D01G497800 chr2B 95.385 195 8 1 2571 2764 719961412 719961606 7.010000e-80 309.0
23 TraesCS2D01G497800 chr2B 97.143 35 1 0 2605 2639 719961476 719961510 7.800000e-05 60.2
24 TraesCS2D01G497800 chr5B 94.296 561 28 4 1673 2231 270667722 270668280 0.000000e+00 856.0
25 TraesCS2D01G497800 chr5B 95.960 198 8 0 2344 2541 270668288 270668485 9.010000e-84 322.0
26 TraesCS2D01G497800 chr5B 94.798 173 7 1 194 364 490757411 490757583 1.190000e-67 268.0
27 TraesCS2D01G497800 chr5B 96.178 157 6 0 2385 2541 321628406 321628562 2.580000e-64 257.0
28 TraesCS2D01G497800 chr4A 96.491 171 6 0 186 356 517406641 517406471 4.250000e-72 283.0
29 TraesCS2D01G497800 chr4A 96.815 157 5 0 2385 2541 738882555 738882399 5.540000e-66 263.0
30 TraesCS2D01G497800 chr6D 96.914 162 5 0 195 356 373370822 373370983 9.200000e-69 272.0
31 TraesCS2D01G497800 chr1D 94.382 178 9 1 185 361 338937201 338937378 9.200000e-69 272.0
32 TraesCS2D01G497800 chr1D 87.368 95 9 1 4452 4546 298558572 298558481 9.880000e-19 106.0
33 TraesCS2D01G497800 chr3D 95.266 169 8 0 192 360 537154699 537154867 1.190000e-67 268.0
34 TraesCS2D01G497800 chr6B 94.737 171 9 0 189 359 119526976 119526806 4.280000e-67 267.0
35 TraesCS2D01G497800 chr6B 96.815 157 5 0 2385 2541 44819863 44820019 5.540000e-66 263.0
36 TraesCS2D01G497800 chr6B 92.308 117 9 0 2 118 450794701 450794585 4.470000e-37 167.0
37 TraesCS2D01G497800 chr1B 94.253 174 9 1 185 357 623195855 623195682 1.540000e-66 265.0
38 TraesCS2D01G497800 chr4D 93.043 115 8 0 1 115 23239221 23239335 1.240000e-37 169.0
39 TraesCS2D01G497800 chr5A 88.158 76 9 0 2699 2774 90609913 90609838 2.770000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G497800 chr2D 593503017 593510216 7199 False 13296.00 13296 100.000000 1 7200 1 chr2D.!!$F2 7199
1 TraesCS2D01G497800 chr2A 728398482 728405996 7514 False 1229.85 2913 92.731875 112 7200 8 chr2A.!!$F1 7088
2 TraesCS2D01G497800 chr2B 719959147 719966222 7075 False 960.12 2824 95.177000 414 7200 10 chr2B.!!$F1 6786
3 TraesCS2D01G497800 chr5B 270667722 270668485 763 False 589.00 856 95.128000 1673 2541 2 chr5B.!!$F3 868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.112995 AAGGCCCAATGTCTTGAGCA 59.887 50.0 0.00 0.0 37.81 4.26 F
96 97 0.112995 AGGCCCAATGTCTTGAGCAA 59.887 50.0 0.00 0.0 37.81 3.91 F
896 911 0.460284 CCAAATCGAGTCCCACTCCG 60.460 60.0 0.00 0.0 42.12 4.63 F
2546 2674 0.105408 AGTTGCGGTAAGTTGACGGT 59.895 50.0 3.72 0.0 0.00 4.83 F
2798 3175 0.537188 TCTCCCGCTGTTCTGGATTC 59.463 55.0 0.00 0.0 0.00 2.52 F
4038 4806 0.837691 AGACAGGAGATGGTGTGGCA 60.838 55.0 0.00 0.0 0.00 4.92 F
4871 5698 0.106335 CTCTGAGGCCCACATGCTAG 59.894 60.0 0.00 0.0 0.00 3.42 F
5038 5865 0.111639 TTGGTTAGGGGCCTTGTGAC 59.888 55.0 0.84 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 1633 0.176680 ATCTGGGTCAGACATGCGTC 59.823 55.000 2.17 0.0 43.63 5.19 R
1781 1813 2.352503 GCACAAAGCATACACCCTTG 57.647 50.000 0.00 0.0 44.79 3.61 R
2783 3160 0.392193 AGCAGAATCCAGAACAGCGG 60.392 55.000 0.00 0.0 0.00 5.52 R
3925 4690 4.081406 AGCAGCAAACTAAACATCCATCA 58.919 39.130 0.00 0.0 0.00 3.07 R
4198 4966 4.087182 TGAAGGTACAAACACCACCAAAA 58.913 39.130 0.00 0.0 41.40 2.44 R
4987 5814 3.730215 TGGCAAATACAAGGCTCCTTA 57.270 42.857 0.11 0.0 34.50 2.69 R
6138 7015 1.071605 CTTCGCCTGCAGAGTACAAC 58.928 55.000 17.39 0.0 0.00 3.32 R
6969 7957 0.698818 ACATGTCTTTGGTCTCCCCC 59.301 55.000 0.00 0.0 0.00 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.114558 GATCATGGATCGGCGAGTC 57.885 57.895 17.22 12.72 29.12 3.36
19 20 0.730834 GATCATGGATCGGCGAGTCG 60.731 60.000 17.22 8.54 29.12 4.18
20 21 1.172812 ATCATGGATCGGCGAGTCGA 61.173 55.000 18.61 10.72 43.61 4.20
21 22 1.065764 CATGGATCGGCGAGTCGAA 59.934 57.895 18.61 0.35 42.69 3.71
22 23 1.065928 ATGGATCGGCGAGTCGAAC 59.934 57.895 18.61 7.18 42.69 3.95
23 24 1.663379 ATGGATCGGCGAGTCGAACA 61.663 55.000 18.61 7.07 42.69 3.18
24 25 1.872679 GGATCGGCGAGTCGAACAC 60.873 63.158 18.61 1.72 42.69 3.32
25 26 1.872679 GATCGGCGAGTCGAACACC 60.873 63.158 18.61 6.79 42.69 4.16
26 27 2.267681 GATCGGCGAGTCGAACACCT 62.268 60.000 18.61 0.00 42.69 4.00
27 28 2.267681 ATCGGCGAGTCGAACACCTC 62.268 60.000 18.61 0.00 42.69 3.85
28 29 2.126031 GGCGAGTCGAACACCTCC 60.126 66.667 18.61 1.56 0.00 4.30
29 30 2.637383 GGCGAGTCGAACACCTCCT 61.637 63.158 18.61 0.00 0.00 3.69
30 31 1.289380 GCGAGTCGAACACCTCCTT 59.711 57.895 18.61 0.00 0.00 3.36
31 32 1.009389 GCGAGTCGAACACCTCCTTG 61.009 60.000 18.61 0.00 0.00 3.61
32 33 0.596577 CGAGTCGAACACCTCCTTGA 59.403 55.000 6.73 0.00 0.00 3.02
33 34 1.401670 CGAGTCGAACACCTCCTTGAG 60.402 57.143 6.73 0.00 0.00 3.02
34 35 1.887198 GAGTCGAACACCTCCTTGAGA 59.113 52.381 0.00 0.00 0.00 3.27
35 36 2.296471 GAGTCGAACACCTCCTTGAGAA 59.704 50.000 0.00 0.00 0.00 2.87
36 37 2.297597 AGTCGAACACCTCCTTGAGAAG 59.702 50.000 0.00 0.00 0.00 2.85
37 38 1.000955 TCGAACACCTCCTTGAGAAGC 59.999 52.381 0.00 0.00 0.00 3.86
38 39 1.814793 GAACACCTCCTTGAGAAGCC 58.185 55.000 0.00 0.00 0.00 4.35
39 40 1.349357 GAACACCTCCTTGAGAAGCCT 59.651 52.381 0.00 0.00 0.00 4.58
40 41 0.980423 ACACCTCCTTGAGAAGCCTC 59.020 55.000 0.00 0.00 39.86 4.70
41 42 0.979665 CACCTCCTTGAGAAGCCTCA 59.020 55.000 0.00 0.00 46.95 3.86
50 51 3.920231 TGAGAAGCCTCAATGCACTAT 57.080 42.857 0.00 0.00 45.74 2.12
51 52 3.801698 TGAGAAGCCTCAATGCACTATC 58.198 45.455 0.00 0.00 45.74 2.08
52 53 3.453717 TGAGAAGCCTCAATGCACTATCT 59.546 43.478 0.00 0.00 45.74 1.98
53 54 3.806380 AGAAGCCTCAATGCACTATCTG 58.194 45.455 0.00 0.00 0.00 2.90
54 55 2.634815 AGCCTCAATGCACTATCTGG 57.365 50.000 0.00 0.00 0.00 3.86
55 56 1.142465 AGCCTCAATGCACTATCTGGG 59.858 52.381 0.00 0.00 0.00 4.45
56 57 1.141657 GCCTCAATGCACTATCTGGGA 59.858 52.381 0.00 0.00 0.00 4.37
57 58 2.843701 CCTCAATGCACTATCTGGGAC 58.156 52.381 0.00 0.00 0.00 4.46
58 59 2.437281 CCTCAATGCACTATCTGGGACT 59.563 50.000 0.00 0.00 0.00 3.85
59 60 3.464907 CTCAATGCACTATCTGGGACTG 58.535 50.000 0.00 0.00 0.00 3.51
60 61 3.106827 TCAATGCACTATCTGGGACTGA 58.893 45.455 0.00 0.00 41.39 3.41
62 63 4.901250 TCAATGCACTATCTGGGACTGATA 59.099 41.667 0.00 0.00 45.12 2.15
63 64 5.366477 TCAATGCACTATCTGGGACTGATAA 59.634 40.000 0.00 0.00 45.97 1.75
64 65 5.894298 ATGCACTATCTGGGACTGATAAA 57.106 39.130 0.00 0.00 45.97 1.40
65 66 5.894298 TGCACTATCTGGGACTGATAAAT 57.106 39.130 0.00 0.00 45.97 1.40
66 67 5.858381 TGCACTATCTGGGACTGATAAATC 58.142 41.667 0.00 0.00 45.97 2.17
67 68 5.604231 TGCACTATCTGGGACTGATAAATCT 59.396 40.000 0.00 0.00 45.97 2.40
68 69 6.100279 TGCACTATCTGGGACTGATAAATCTT 59.900 38.462 0.00 0.00 45.97 2.40
69 70 6.648725 GCACTATCTGGGACTGATAAATCTTC 59.351 42.308 0.00 0.00 45.97 2.87
70 71 7.472663 GCACTATCTGGGACTGATAAATCTTCT 60.473 40.741 0.00 0.00 45.97 2.85
71 72 8.428063 CACTATCTGGGACTGATAAATCTTCTT 58.572 37.037 0.00 0.00 45.97 2.52
72 73 8.646900 ACTATCTGGGACTGATAAATCTTCTTC 58.353 37.037 0.00 0.00 45.97 2.87
73 74 6.240549 TCTGGGACTGATAAATCTTCTTCC 57.759 41.667 0.00 0.00 0.00 3.46
74 75 5.023533 TGGGACTGATAAATCTTCTTCCG 57.976 43.478 0.00 0.00 0.00 4.30
75 76 3.810386 GGGACTGATAAATCTTCTTCCGC 59.190 47.826 0.00 0.00 0.00 5.54
76 77 4.442706 GGACTGATAAATCTTCTTCCGCA 58.557 43.478 0.00 0.00 0.00 5.69
77 78 4.876107 GGACTGATAAATCTTCTTCCGCAA 59.124 41.667 0.00 0.00 0.00 4.85
78 79 5.007136 GGACTGATAAATCTTCTTCCGCAAG 59.993 44.000 0.00 0.00 0.00 4.01
90 91 3.685435 CGCAAGGCCCAATGTCTT 58.315 55.556 0.00 0.00 0.00 3.01
91 92 1.213537 CGCAAGGCCCAATGTCTTG 59.786 57.895 0.00 2.29 40.38 3.02
92 93 1.243342 CGCAAGGCCCAATGTCTTGA 61.243 55.000 10.47 0.00 39.97 3.02
93 94 0.529378 GCAAGGCCCAATGTCTTGAG 59.471 55.000 10.47 0.00 39.97 3.02
94 95 0.529378 CAAGGCCCAATGTCTTGAGC 59.471 55.000 0.00 0.00 39.97 4.26
95 96 0.112995 AAGGCCCAATGTCTTGAGCA 59.887 50.000 0.00 0.00 37.81 4.26
96 97 0.112995 AGGCCCAATGTCTTGAGCAA 59.887 50.000 0.00 0.00 37.81 3.91
97 98 0.968405 GGCCCAATGTCTTGAGCAAA 59.032 50.000 0.00 0.00 37.81 3.68
98 99 1.344114 GGCCCAATGTCTTGAGCAAAA 59.656 47.619 0.00 0.00 37.81 2.44
99 100 2.407090 GCCCAATGTCTTGAGCAAAAC 58.593 47.619 0.00 0.00 36.23 2.43
100 101 2.224018 GCCCAATGTCTTGAGCAAAACA 60.224 45.455 0.00 0.00 36.23 2.83
101 102 3.645884 CCCAATGTCTTGAGCAAAACAG 58.354 45.455 0.00 0.00 34.04 3.16
102 103 3.054878 CCAATGTCTTGAGCAAAACAGC 58.945 45.455 0.00 0.00 34.04 4.40
104 105 4.365723 CAATGTCTTGAGCAAAACAGCTT 58.634 39.130 0.00 0.00 46.75 3.74
105 106 3.698029 TGTCTTGAGCAAAACAGCTTC 57.302 42.857 0.00 0.00 46.75 3.86
106 107 3.282021 TGTCTTGAGCAAAACAGCTTCT 58.718 40.909 0.00 0.00 46.75 2.85
107 108 3.065786 TGTCTTGAGCAAAACAGCTTCTG 59.934 43.478 0.00 0.00 46.75 3.02
108 109 2.033801 TCTTGAGCAAAACAGCTTCTGC 59.966 45.455 0.00 0.00 46.75 4.26
109 110 0.670162 TGAGCAAAACAGCTTCTGCC 59.330 50.000 0.00 0.00 46.75 4.85
110 111 0.670162 GAGCAAAACAGCTTCTGCCA 59.330 50.000 0.00 0.00 46.75 4.92
127 128 2.184830 CACCGAGGCATGCTCATGG 61.185 63.158 18.92 16.18 39.16 3.66
175 180 8.878769 ACAAAGCAAAACAGTGTAAATTAAAGG 58.121 29.630 0.00 0.00 0.00 3.11
176 181 9.092876 CAAAGCAAAACAGTGTAAATTAAAGGA 57.907 29.630 0.00 0.00 0.00 3.36
177 182 9.830975 AAAGCAAAACAGTGTAAATTAAAGGAT 57.169 25.926 0.00 0.00 0.00 3.24
178 183 9.830975 AAGCAAAACAGTGTAAATTAAAGGATT 57.169 25.926 0.00 0.00 0.00 3.01
179 184 9.260002 AGCAAAACAGTGTAAATTAAAGGATTG 57.740 29.630 0.00 0.00 0.00 2.67
180 185 8.495148 GCAAAACAGTGTAAATTAAAGGATTGG 58.505 33.333 0.00 0.00 0.00 3.16
181 186 8.987890 CAAAACAGTGTAAATTAAAGGATTGGG 58.012 33.333 0.00 0.00 0.00 4.12
197 205 5.044846 AGGATTGGGCTGACAAAATACTACT 60.045 40.000 0.00 0.00 33.48 2.57
199 207 4.216411 TGGGCTGACAAAATACTACTCC 57.784 45.455 0.00 0.00 0.00 3.85
200 208 3.054655 TGGGCTGACAAAATACTACTCCC 60.055 47.826 0.00 0.00 0.00 4.30
201 209 3.200165 GGGCTGACAAAATACTACTCCCT 59.800 47.826 0.00 0.00 0.00 4.20
202 210 4.443621 GGCTGACAAAATACTACTCCCTC 58.556 47.826 0.00 0.00 0.00 4.30
203 211 4.443621 GCTGACAAAATACTACTCCCTCC 58.556 47.826 0.00 0.00 0.00 4.30
204 212 4.683832 CTGACAAAATACTACTCCCTCCG 58.316 47.826 0.00 0.00 0.00 4.63
205 213 4.091549 TGACAAAATACTACTCCCTCCGT 58.908 43.478 0.00 0.00 0.00 4.69
206 214 4.529377 TGACAAAATACTACTCCCTCCGTT 59.471 41.667 0.00 0.00 0.00 4.44
207 215 5.082251 ACAAAATACTACTCCCTCCGTTC 57.918 43.478 0.00 0.00 0.00 3.95
208 216 4.081254 ACAAAATACTACTCCCTCCGTTCC 60.081 45.833 0.00 0.00 0.00 3.62
209 217 3.684408 AATACTACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
210 218 4.803329 AATACTACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
211 219 4.803329 ATACTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
212 220 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
213 221 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
214 222 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
215 223 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
216 224 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
217 225 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
218 226 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
219 227 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
220 228 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
221 229 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
222 230 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
223 231 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
224 232 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
225 233 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
242 250 9.847224 AAGTCTTTTTAGAGATTCCACTACAAA 57.153 29.630 0.00 0.00 0.00 2.83
243 251 9.274206 AGTCTTTTTAGAGATTCCACTACAAAC 57.726 33.333 0.00 0.00 0.00 2.93
244 252 9.274206 GTCTTTTTAGAGATTCCACTACAAACT 57.726 33.333 0.00 0.00 0.00 2.66
251 259 7.481642 AGAGATTCCACTACAAACTACATACG 58.518 38.462 0.00 0.00 0.00 3.06
252 260 6.570692 AGATTCCACTACAAACTACATACGG 58.429 40.000 0.00 0.00 0.00 4.02
253 261 5.981088 TTCCACTACAAACTACATACGGA 57.019 39.130 0.00 0.00 0.00 4.69
254 262 6.534475 TTCCACTACAAACTACATACGGAT 57.466 37.500 0.00 0.00 0.00 4.18
255 263 5.898174 TCCACTACAAACTACATACGGATG 58.102 41.667 5.94 5.94 39.16 3.51
257 265 6.602803 TCCACTACAAACTACATACGGATGTA 59.397 38.462 19.32 19.32 44.77 2.29
258 266 7.286087 TCCACTACAAACTACATACGGATGTAT 59.714 37.037 20.64 8.38 45.42 2.29
298 306 7.913674 AGTGTAGATTCACTCATTTTCTTCC 57.086 36.000 0.00 0.00 44.07 3.46
299 307 6.591834 AGTGTAGATTCACTCATTTTCTTCCG 59.408 38.462 0.00 0.00 44.07 4.30
300 308 6.369065 GTGTAGATTCACTCATTTTCTTCCGT 59.631 38.462 0.00 0.00 35.68 4.69
301 309 7.544566 GTGTAGATTCACTCATTTTCTTCCGTA 59.455 37.037 0.00 0.00 35.68 4.02
302 310 8.258007 TGTAGATTCACTCATTTTCTTCCGTAT 58.742 33.333 0.00 0.00 0.00 3.06
303 311 7.545362 AGATTCACTCATTTTCTTCCGTATG 57.455 36.000 0.00 0.00 0.00 2.39
304 312 7.106239 AGATTCACTCATTTTCTTCCGTATGT 58.894 34.615 0.00 0.00 0.00 2.29
305 313 8.258007 AGATTCACTCATTTTCTTCCGTATGTA 58.742 33.333 0.00 0.00 0.00 2.29
306 314 7.827819 TTCACTCATTTTCTTCCGTATGTAG 57.172 36.000 0.00 0.00 0.00 2.74
307 315 6.931838 TCACTCATTTTCTTCCGTATGTAGT 58.068 36.000 0.00 0.00 0.00 2.73
308 316 7.033791 TCACTCATTTTCTTCCGTATGTAGTC 58.966 38.462 0.00 0.00 0.00 2.59
309 317 6.255887 CACTCATTTTCTTCCGTATGTAGTCC 59.744 42.308 0.00 0.00 0.00 3.85
310 318 6.070995 ACTCATTTTCTTCCGTATGTAGTCCA 60.071 38.462 0.00 0.00 0.00 4.02
311 319 6.884832 TCATTTTCTTCCGTATGTAGTCCAT 58.115 36.000 0.00 0.00 37.58 3.41
312 320 8.014070 TCATTTTCTTCCGTATGTAGTCCATA 57.986 34.615 0.00 0.00 34.86 2.74
313 321 8.141909 TCATTTTCTTCCGTATGTAGTCCATAG 58.858 37.037 0.00 0.00 36.71 2.23
314 322 7.414222 TTTTCTTCCGTATGTAGTCCATAGT 57.586 36.000 0.00 0.00 36.71 2.12
315 323 7.414222 TTTCTTCCGTATGTAGTCCATAGTT 57.586 36.000 0.00 0.00 36.71 2.24
316 324 6.387041 TCTTCCGTATGTAGTCCATAGTTG 57.613 41.667 0.00 0.00 36.71 3.16
317 325 6.124340 TCTTCCGTATGTAGTCCATAGTTGA 58.876 40.000 0.00 0.00 36.71 3.18
318 326 6.604396 TCTTCCGTATGTAGTCCATAGTTGAA 59.396 38.462 0.00 0.00 36.71 2.69
319 327 6.971726 TCCGTATGTAGTCCATAGTTGAAT 57.028 37.500 0.00 0.00 36.71 2.57
320 328 6.978338 TCCGTATGTAGTCCATAGTTGAATC 58.022 40.000 0.00 0.00 36.71 2.52
321 329 6.776116 TCCGTATGTAGTCCATAGTTGAATCT 59.224 38.462 0.00 0.00 36.71 2.40
322 330 7.040617 TCCGTATGTAGTCCATAGTTGAATCTC 60.041 40.741 0.00 0.00 36.71 2.75
323 331 7.040340 CCGTATGTAGTCCATAGTTGAATCTCT 60.040 40.741 0.00 0.00 36.71 3.10
324 332 9.000486 CGTATGTAGTCCATAGTTGAATCTCTA 58.000 37.037 0.00 0.00 36.71 2.43
331 339 9.660180 AGTCCATAGTTGAATCTCTAAAAAGAC 57.340 33.333 0.00 0.00 0.00 3.01
332 340 9.660180 GTCCATAGTTGAATCTCTAAAAAGACT 57.340 33.333 0.00 0.00 0.00 3.24
350 358 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
351 359 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
352 360 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
353 361 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
354 362 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
355 363 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
356 364 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
357 365 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
358 366 4.591321 TTTAGGAACGGAGGGAGTAGTA 57.409 45.455 0.00 0.00 0.00 1.82
359 367 2.433662 AGGAACGGAGGGAGTAGTAC 57.566 55.000 0.00 0.00 0.00 2.73
360 368 1.637553 AGGAACGGAGGGAGTAGTACA 59.362 52.381 2.52 0.00 0.00 2.90
361 369 1.747924 GGAACGGAGGGAGTAGTACAC 59.252 57.143 2.52 0.00 0.00 2.90
362 370 2.440409 GAACGGAGGGAGTAGTACACA 58.560 52.381 2.52 0.00 0.00 3.72
363 371 2.125773 ACGGAGGGAGTAGTACACAG 57.874 55.000 2.52 0.00 0.00 3.66
364 372 0.739561 CGGAGGGAGTAGTACACAGC 59.260 60.000 2.52 0.00 0.00 4.40
365 373 1.112950 GGAGGGAGTAGTACACAGCC 58.887 60.000 2.52 0.00 0.00 4.85
366 374 1.342175 GGAGGGAGTAGTACACAGCCT 60.342 57.143 2.52 0.00 0.00 4.58
367 375 2.458620 GAGGGAGTAGTACACAGCCTT 58.541 52.381 2.52 0.00 0.00 4.35
368 376 2.832733 GAGGGAGTAGTACACAGCCTTT 59.167 50.000 2.52 0.00 0.00 3.11
369 377 3.248888 AGGGAGTAGTACACAGCCTTTT 58.751 45.455 2.52 0.00 0.00 2.27
370 378 3.651423 AGGGAGTAGTACACAGCCTTTTT 59.349 43.478 2.52 0.00 0.00 1.94
419 427 3.969553 TGAGGATCACTAGTACACAGCT 58.030 45.455 0.00 0.00 42.56 4.24
420 428 5.112129 TGAGGATCACTAGTACACAGCTA 57.888 43.478 0.00 0.00 42.56 3.32
421 429 5.126779 TGAGGATCACTAGTACACAGCTAG 58.873 45.833 0.00 0.00 42.56 3.42
422 430 4.465886 AGGATCACTAGTACACAGCTAGG 58.534 47.826 0.00 0.00 40.01 3.02
423 431 3.004944 GGATCACTAGTACACAGCTAGGC 59.995 52.174 0.00 0.00 40.01 3.93
424 432 3.367646 TCACTAGTACACAGCTAGGCT 57.632 47.619 0.00 0.00 40.01 4.58
439 447 2.203181 GCTGAGAGGAGCCCATGC 60.203 66.667 0.00 0.00 32.35 4.06
494 503 2.203422 CCTGAAAACCGTGGGCCA 60.203 61.111 0.00 0.00 0.00 5.36
513 522 3.853597 AAAGGACGACGTCACCGGC 62.854 63.158 27.77 11.26 39.32 6.13
518 527 2.202440 CGACGTCACCGGCACTAG 60.202 66.667 17.16 0.00 44.52 2.57
581 590 0.820891 CTGGCCCCACATGTCATAGC 60.821 60.000 0.00 0.00 0.00 2.97
896 911 0.460284 CCAAATCGAGTCCCACTCCG 60.460 60.000 0.00 0.00 42.12 4.63
908 923 3.273654 ACTCCGACTCCTCCCCCA 61.274 66.667 0.00 0.00 0.00 4.96
935 950 6.738453 GCGCATAAATACAAATCCCCAAATCT 60.738 38.462 0.30 0.00 0.00 2.40
979 995 2.158755 CCCTAACCCTAGCAATCCACAG 60.159 54.545 0.00 0.00 0.00 3.66
1356 1385 1.233019 GGATGGCGATCTGGTTCATG 58.767 55.000 8.71 0.00 0.00 3.07
1357 1386 0.590195 GATGGCGATCTGGTTCATGC 59.410 55.000 0.81 0.00 0.00 4.06
1368 1397 1.755959 TGGTTCATGCTGTTGCTGTTT 59.244 42.857 0.00 0.00 40.48 2.83
1411 1441 6.465084 AGATTTGGTTAGAGTGTGGTACTTC 58.535 40.000 0.00 0.00 40.53 3.01
1602 1633 5.296780 ACAATTAGCATAATGGTTGTCTCCG 59.703 40.000 0.00 0.00 0.00 4.63
1689 1720 4.525912 AGTCAGATTTTCCAATGCAACC 57.474 40.909 0.00 0.00 0.00 3.77
1891 1923 2.699321 GTCGGCTTTTCCTATAGGGACT 59.301 50.000 18.97 0.00 45.03 3.85
1902 1934 3.775316 CCTATAGGGACTGAGGTTTGTGT 59.225 47.826 11.33 0.00 41.52 3.72
1931 1963 9.814899 ATTCATGTTCTTGTTTTTAATCACACA 57.185 25.926 0.00 0.00 0.00 3.72
1934 1966 6.862209 TGTTCTTGTTTTTAATCACACAGCT 58.138 32.000 0.00 0.00 0.00 4.24
1962 1995 6.686484 TGCATAATACTCCCTGTCATACAT 57.314 37.500 0.00 0.00 0.00 2.29
1977 2010 7.255242 CCTGTCATACATATTTGGCCTTACTTG 60.255 40.741 3.32 0.00 0.00 3.16
1989 2022 4.217550 TGGCCTTACTTGTAATGCTTGTTC 59.782 41.667 3.32 4.76 0.00 3.18
1996 2029 5.072741 ACTTGTAATGCTTGTTCCATCTGT 58.927 37.500 0.00 0.00 0.00 3.41
2119 2152 7.975058 TGATGTTTCCTTGCATTGTAATACATG 59.025 33.333 0.00 0.00 0.00 3.21
2159 2192 1.208706 AAGCTCTAGAAGAAGGGGGC 58.791 55.000 0.00 0.00 0.00 5.80
2192 2226 4.141779 GGGAAGACGGTCTATGTATTTGGT 60.142 45.833 11.71 0.00 0.00 3.67
2336 2370 5.082425 ACAGAAAAATTTCCTGAGCATCCT 58.918 37.500 20.65 1.62 37.92 3.24
2541 2669 3.059188 CCAGTTGTAGTTGCGGTAAGTTG 60.059 47.826 0.00 0.00 0.00 3.16
2542 2670 3.805422 CAGTTGTAGTTGCGGTAAGTTGA 59.195 43.478 0.00 0.00 0.00 3.18
2544 2672 2.396601 TGTAGTTGCGGTAAGTTGACG 58.603 47.619 0.00 0.00 0.00 4.35
2545 2673 1.723003 GTAGTTGCGGTAAGTTGACGG 59.277 52.381 3.72 0.00 0.00 4.79
2546 2674 0.105408 AGTTGCGGTAAGTTGACGGT 59.895 50.000 3.72 0.00 0.00 4.83
2563 2939 5.423886 TGACGGTGAATGCATGAGTATTTA 58.576 37.500 0.00 0.00 29.73 1.40
2597 2973 8.613060 AATAATCGCATGTCTTTCATCAGTAT 57.387 30.769 0.00 0.00 34.09 2.12
2602 2978 6.255670 TCGCATGTCTTTCATCAGTATACAAC 59.744 38.462 5.50 0.00 34.09 3.32
2765 3142 6.034161 TCTTACTTCCCTAGTTGTGCTAAC 57.966 41.667 0.00 0.00 38.33 2.34
2770 3147 4.471904 TCCCTAGTTGTGCTAACTCATG 57.528 45.455 9.67 0.00 0.00 3.07
2771 3148 2.939103 CCCTAGTTGTGCTAACTCATGC 59.061 50.000 9.67 0.00 0.00 4.06
2779 3156 3.627123 TGTGCTAACTCATGCGCATAAAT 59.373 39.130 24.84 12.13 43.49 1.40
2783 3160 4.377841 GCTAACTCATGCGCATAAATCTCC 60.378 45.833 24.84 6.26 0.00 3.71
2789 3166 1.160329 GCGCATAAATCTCCCGCTGT 61.160 55.000 0.30 0.00 41.28 4.40
2790 3167 1.299541 CGCATAAATCTCCCGCTGTT 58.700 50.000 0.00 0.00 0.00 3.16
2798 3175 0.537188 TCTCCCGCTGTTCTGGATTC 59.463 55.000 0.00 0.00 0.00 2.52
2811 3188 2.501723 TCTGGATTCTGCTAAGGACACC 59.498 50.000 0.00 0.00 0.00 4.16
2812 3189 2.237143 CTGGATTCTGCTAAGGACACCA 59.763 50.000 0.00 0.00 0.00 4.17
2833 3210 6.655003 CACCATCTACCTTTGTTATGTCAGTT 59.345 38.462 0.00 0.00 0.00 3.16
2893 3270 4.103153 TCCTATAAACCCTGGAGATGCAAG 59.897 45.833 0.00 0.00 0.00 4.01
2946 3323 1.961277 CGAACCCACAGTGCAGACC 60.961 63.158 0.00 0.00 0.00 3.85
3222 3675 6.040616 AGAGGACCGGTACTAACATTCTATTG 59.959 42.308 22.44 0.00 0.00 1.90
3309 3765 7.203910 TGAAGTTGTGTGTTTGTTTACTTTGT 58.796 30.769 0.00 0.00 0.00 2.83
3312 3768 8.426881 AGTTGTGTGTTTGTTTACTTTGTTTT 57.573 26.923 0.00 0.00 0.00 2.43
3323 3779 7.503165 TGTTTACTTTGTTTTCGCTTTGTTTC 58.497 30.769 0.00 0.00 0.00 2.78
3431 3887 2.496899 TTCATGTTTGAGGGAGCTCC 57.503 50.000 25.59 25.59 32.27 4.70
3475 3934 5.720371 TTTGTTGGGAATGTTATCACCAG 57.280 39.130 0.00 0.00 32.01 4.00
3476 3935 4.380843 TGTTGGGAATGTTATCACCAGT 57.619 40.909 0.00 0.00 32.01 4.00
3477 3936 5.506730 TGTTGGGAATGTTATCACCAGTA 57.493 39.130 0.00 0.00 32.01 2.74
3478 3937 6.073447 TGTTGGGAATGTTATCACCAGTAT 57.927 37.500 0.00 0.00 32.01 2.12
3488 3947 6.413892 TGTTATCACCAGTATGAAATGCTCA 58.586 36.000 0.00 0.00 37.07 4.26
3583 4210 4.763793 CCCTGAAGCATCTCAAAGAAGAAA 59.236 41.667 0.00 0.00 0.00 2.52
3678 4307 8.988934 TGTCTACTGAAATATCTGTTGTTGTTC 58.011 33.333 0.00 0.00 38.51 3.18
3925 4690 2.808543 GACGGCACTTCATTGAGACTTT 59.191 45.455 0.00 0.00 0.00 2.66
3926 4691 2.549754 ACGGCACTTCATTGAGACTTTG 59.450 45.455 0.00 0.00 0.00 2.77
3927 4692 2.807967 CGGCACTTCATTGAGACTTTGA 59.192 45.455 0.00 0.00 0.00 2.69
4038 4806 0.837691 AGACAGGAGATGGTGTGGCA 60.838 55.000 0.00 0.00 0.00 4.92
4177 4945 2.549064 AGCCAAGCCCAATTTTTCAC 57.451 45.000 0.00 0.00 0.00 3.18
4198 4966 3.769844 ACGAACTGTGTATTGGGATCTCT 59.230 43.478 0.00 0.00 0.00 3.10
4226 4994 4.062293 TGGTGTTTGTACCTTCAAGATCG 58.938 43.478 0.00 0.00 41.43 3.69
4261 5029 4.398358 ACAAGCATAGAGTAGTGCGAGTTA 59.602 41.667 0.00 0.00 45.69 2.24
4350 5155 9.784680 CTCTATATGCATCTGAAAATATTTGCC 57.215 33.333 0.19 0.00 0.00 4.52
4444 5250 1.610886 GGCAGGAACACTTACCCTGTC 60.611 57.143 0.00 0.00 46.86 3.51
4596 5409 9.813080 GAACTACTGTCTAAATTGTCATGAAAC 57.187 33.333 0.00 0.00 0.00 2.78
4601 5414 7.649306 ACTGTCTAAATTGTCATGAAACTTTGC 59.351 33.333 10.64 3.34 0.00 3.68
4832 5659 4.473477 AGGCAGTCACCAATAGTTCTAC 57.527 45.455 0.00 0.00 0.00 2.59
4871 5698 0.106335 CTCTGAGGCCCACATGCTAG 59.894 60.000 0.00 0.00 0.00 3.42
4877 5704 3.053693 TGAGGCCCACATGCTAGTTAATT 60.054 43.478 0.00 0.00 0.00 1.40
4878 5705 3.290710 AGGCCCACATGCTAGTTAATTG 58.709 45.455 0.00 0.00 0.00 2.32
4915 5742 6.053650 CCAATCAATCTTGTCTAGATGCTGA 58.946 40.000 0.00 0.22 42.90 4.26
5036 5863 1.937191 ATTTGGTTAGGGGCCTTGTG 58.063 50.000 0.84 0.00 0.00 3.33
5038 5865 0.111639 TTGGTTAGGGGCCTTGTGAC 59.888 55.000 0.84 0.00 0.00 3.67
5091 5918 6.909550 ATGTTTGGTAACTTGGCTTATGAA 57.090 33.333 0.00 0.00 35.24 2.57
5158 5985 6.749139 TCTATGTACATGTAGATTGCCTGTC 58.251 40.000 19.49 0.00 0.00 3.51
5214 6041 4.488126 TCTTTTGTGTTGATGTAGCTGC 57.512 40.909 0.00 0.00 0.00 5.25
5226 6053 1.021390 GTAGCTGCGTGATGCCAGTT 61.021 55.000 0.00 0.00 45.60 3.16
5759 6635 7.124901 AGTCAGCTGATTACCTTGAGAAGATTA 59.875 37.037 21.47 0.00 0.00 1.75
6130 7007 4.148696 CGAACAAGCCTTGCATTTTAACTG 59.851 41.667 3.88 0.00 0.00 3.16
6138 7015 5.345741 GCCTTGCATTTTAACTGTGTGTATG 59.654 40.000 0.00 0.00 0.00 2.39
6172 7051 6.866770 TGCAGGCGAAGTACATTAATAGATAC 59.133 38.462 0.00 0.00 0.00 2.24
6181 7060 8.591114 AGTACATTAATAGATACTACCGCCAT 57.409 34.615 0.00 0.00 0.00 4.40
6194 7073 3.189921 GCCATGCGCATGAACTGA 58.810 55.556 43.71 7.16 41.20 3.41
6203 7082 2.538333 GCGCATGAACTGATGTGATGTC 60.538 50.000 0.30 0.00 36.15 3.06
6208 7087 4.356405 TGAACTGATGTGATGTCCAACT 57.644 40.909 0.00 0.00 0.00 3.16
6212 7091 4.067896 ACTGATGTGATGTCCAACTTCAC 58.932 43.478 15.39 15.39 46.95 3.18
6337 7218 4.892934 TGTATTGGGCCAATGGATAACTTC 59.107 41.667 36.11 16.82 35.54 3.01
6386 7267 1.951209 TTCACCCATGCTCCTGAGTA 58.049 50.000 0.00 0.00 0.00 2.59
6404 7285 2.630580 AGTATCTCCTCCTTCGGCATTC 59.369 50.000 0.00 0.00 0.00 2.67
6407 7288 2.964209 TCTCCTCCTTCGGCATTCTAT 58.036 47.619 0.00 0.00 0.00 1.98
6436 7323 9.244799 CTCTTTGTACTGCGATATGTAACATTA 57.755 33.333 0.00 0.00 0.00 1.90
6484 7372 6.463995 AAGTAGATCCTGTAAGAGCAGAAG 57.536 41.667 0.00 0.00 38.70 2.85
6593 7488 7.933577 TGATCGGATCCCTATATATTTTGATGC 59.066 37.037 15.06 0.00 0.00 3.91
6595 7490 7.500992 TCGGATCCCTATATATTTTGATGCTC 58.499 38.462 6.06 0.00 0.00 4.26
6602 7497 8.328758 CCCTATATATTTTGATGCTCAACCCTA 58.671 37.037 0.00 0.00 35.89 3.53
6743 7653 2.093306 ACGTGGCGATGATTTTGAGA 57.907 45.000 0.00 0.00 0.00 3.27
6753 7663 5.730568 GCGATGATTTTGAGAATACCACCAC 60.731 44.000 0.00 0.00 0.00 4.16
6773 7683 4.000988 CACTTGTTTTAGCGATGGTACCT 58.999 43.478 14.36 0.00 0.00 3.08
6776 7686 1.669265 GTTTTAGCGATGGTACCTGGC 59.331 52.381 14.36 13.31 0.00 4.85
6777 7687 0.906066 TTTAGCGATGGTACCTGGCA 59.094 50.000 14.36 0.00 0.00 4.92
6839 7767 4.926244 TGTTAGAATTTTGCGCAGTTCAA 58.074 34.783 24.46 10.74 0.00 2.69
6866 7794 2.829720 AGTTCAGACGGTGGCTGTAATA 59.170 45.455 0.00 0.00 34.98 0.98
6886 7814 8.117988 TGTAATATTCGCAGGTCGTAAATTTTC 58.882 33.333 0.00 0.00 39.67 2.29
6926 7854 2.540931 GGCACATCTTTGTTTGCACTTG 59.459 45.455 0.00 0.00 32.34 3.16
6968 7956 8.810990 ACATCTTACCAAATTCCGGTAAATTA 57.189 30.769 16.27 8.62 45.89 1.40
6969 7957 8.899771 ACATCTTACCAAATTCCGGTAAATTAG 58.100 33.333 16.27 8.23 45.89 1.73
6977 7965 2.401568 TCCGGTAAATTAGGGGGAGAC 58.598 52.381 0.00 0.00 0.00 3.36
7011 7999 1.512734 GCGTTGCATCAAAGCGAGG 60.513 57.895 2.14 0.00 38.77 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.730834 CGACTCGCCGATCCATGATC 60.731 60.000 0.00 0.00 35.88 2.92
2 3 1.381165 TTCGACTCGCCGATCCATGA 61.381 55.000 0.00 0.00 38.45 3.07
3 4 1.065764 TTCGACTCGCCGATCCATG 59.934 57.895 0.00 0.00 38.45 3.66
5 6 2.337246 TGTTCGACTCGCCGATCCA 61.337 57.895 0.00 0.00 38.45 3.41
6 7 1.872679 GTGTTCGACTCGCCGATCC 60.873 63.158 0.00 0.00 38.45 3.36
7 8 1.872679 GGTGTTCGACTCGCCGATC 60.873 63.158 4.06 0.00 38.45 3.69
8 9 2.181021 GGTGTTCGACTCGCCGAT 59.819 61.111 4.06 0.00 38.45 4.18
9 10 2.974489 GAGGTGTTCGACTCGCCGA 61.974 63.158 11.93 0.00 40.03 5.54
11 12 2.126031 GGAGGTGTTCGACTCGCC 60.126 66.667 10.33 10.33 34.58 5.54
12 13 1.009389 CAAGGAGGTGTTCGACTCGC 61.009 60.000 0.00 0.00 34.58 5.03
13 14 0.596577 TCAAGGAGGTGTTCGACTCG 59.403 55.000 0.00 0.00 34.58 4.18
14 15 1.887198 TCTCAAGGAGGTGTTCGACTC 59.113 52.381 0.00 0.00 0.00 3.36
15 16 1.996798 TCTCAAGGAGGTGTTCGACT 58.003 50.000 0.00 0.00 0.00 4.18
16 17 2.678324 CTTCTCAAGGAGGTGTTCGAC 58.322 52.381 0.00 0.00 0.00 4.20
17 18 1.000955 GCTTCTCAAGGAGGTGTTCGA 59.999 52.381 0.00 0.00 0.00 3.71
18 19 1.433534 GCTTCTCAAGGAGGTGTTCG 58.566 55.000 0.00 0.00 0.00 3.95
19 20 1.349357 AGGCTTCTCAAGGAGGTGTTC 59.651 52.381 0.00 0.00 0.00 3.18
20 21 1.349357 GAGGCTTCTCAAGGAGGTGTT 59.651 52.381 0.00 0.00 37.47 3.32
21 22 0.980423 GAGGCTTCTCAAGGAGGTGT 59.020 55.000 0.00 0.00 37.47 4.16
22 23 0.979665 TGAGGCTTCTCAAGGAGGTG 59.020 55.000 0.00 0.00 43.84 4.00
23 24 3.483352 TGAGGCTTCTCAAGGAGGT 57.517 52.632 0.00 0.00 43.84 3.85
30 31 3.453717 AGATAGTGCATTGAGGCTTCTCA 59.546 43.478 0.00 0.00 44.99 3.27
31 32 3.808726 CAGATAGTGCATTGAGGCTTCTC 59.191 47.826 0.00 0.00 38.00 2.87
32 33 3.433314 CCAGATAGTGCATTGAGGCTTCT 60.433 47.826 0.00 0.00 34.04 2.85
33 34 2.877168 CCAGATAGTGCATTGAGGCTTC 59.123 50.000 0.00 0.00 34.04 3.86
34 35 2.422519 CCCAGATAGTGCATTGAGGCTT 60.423 50.000 0.00 0.00 34.04 4.35
35 36 1.142465 CCCAGATAGTGCATTGAGGCT 59.858 52.381 0.00 0.00 34.04 4.58
36 37 1.141657 TCCCAGATAGTGCATTGAGGC 59.858 52.381 0.00 0.00 0.00 4.70
37 38 2.437281 AGTCCCAGATAGTGCATTGAGG 59.563 50.000 0.00 0.00 0.00 3.86
38 39 3.133542 TCAGTCCCAGATAGTGCATTGAG 59.866 47.826 0.00 0.00 0.00 3.02
39 40 3.106827 TCAGTCCCAGATAGTGCATTGA 58.893 45.455 0.00 0.00 0.00 2.57
40 41 3.548745 TCAGTCCCAGATAGTGCATTG 57.451 47.619 0.00 0.00 0.00 2.82
41 42 5.894298 TTATCAGTCCCAGATAGTGCATT 57.106 39.130 0.00 0.00 30.32 3.56
42 43 5.894298 TTTATCAGTCCCAGATAGTGCAT 57.106 39.130 0.00 0.00 30.32 3.96
43 44 5.604231 AGATTTATCAGTCCCAGATAGTGCA 59.396 40.000 0.00 0.00 30.32 4.57
44 45 6.107901 AGATTTATCAGTCCCAGATAGTGC 57.892 41.667 0.00 0.00 30.32 4.40
45 46 7.961351 AGAAGATTTATCAGTCCCAGATAGTG 58.039 38.462 0.00 0.00 30.32 2.74
46 47 8.560124 AAGAAGATTTATCAGTCCCAGATAGT 57.440 34.615 0.00 0.00 30.32 2.12
47 48 8.093927 GGAAGAAGATTTATCAGTCCCAGATAG 58.906 40.741 0.00 0.00 30.32 2.08
48 49 7.255977 CGGAAGAAGATTTATCAGTCCCAGATA 60.256 40.741 0.00 0.00 0.00 1.98
49 50 6.463614 CGGAAGAAGATTTATCAGTCCCAGAT 60.464 42.308 0.00 0.00 0.00 2.90
50 51 5.163405 CGGAAGAAGATTTATCAGTCCCAGA 60.163 44.000 0.00 0.00 0.00 3.86
51 52 5.053145 CGGAAGAAGATTTATCAGTCCCAG 58.947 45.833 0.00 0.00 0.00 4.45
52 53 4.683400 GCGGAAGAAGATTTATCAGTCCCA 60.683 45.833 0.00 0.00 0.00 4.37
53 54 3.810386 GCGGAAGAAGATTTATCAGTCCC 59.190 47.826 0.00 0.00 0.00 4.46
54 55 4.442706 TGCGGAAGAAGATTTATCAGTCC 58.557 43.478 0.00 0.00 0.00 3.85
55 56 5.007136 CCTTGCGGAAGAAGATTTATCAGTC 59.993 44.000 19.23 0.00 0.00 3.51
56 57 4.878397 CCTTGCGGAAGAAGATTTATCAGT 59.122 41.667 19.23 0.00 0.00 3.41
57 58 4.260948 GCCTTGCGGAAGAAGATTTATCAG 60.261 45.833 19.23 0.00 0.00 2.90
58 59 3.627577 GCCTTGCGGAAGAAGATTTATCA 59.372 43.478 19.23 0.00 0.00 2.15
59 60 3.003793 GGCCTTGCGGAAGAAGATTTATC 59.996 47.826 19.23 0.00 0.00 1.75
60 61 2.952310 GGCCTTGCGGAAGAAGATTTAT 59.048 45.455 19.23 0.00 0.00 1.40
61 62 2.365582 GGCCTTGCGGAAGAAGATTTA 58.634 47.619 19.23 0.00 0.00 1.40
62 63 1.177401 GGCCTTGCGGAAGAAGATTT 58.823 50.000 19.23 0.00 0.00 2.17
63 64 0.681243 GGGCCTTGCGGAAGAAGATT 60.681 55.000 19.23 0.00 0.00 2.40
64 65 1.077429 GGGCCTTGCGGAAGAAGAT 60.077 57.895 19.23 0.00 0.00 2.40
65 66 2.063015 TTGGGCCTTGCGGAAGAAGA 62.063 55.000 19.23 0.00 0.00 2.87
66 67 0.967380 ATTGGGCCTTGCGGAAGAAG 60.967 55.000 19.23 3.25 0.00 2.85
67 68 1.076549 ATTGGGCCTTGCGGAAGAA 59.923 52.632 19.23 4.55 0.00 2.52
68 69 1.678635 CATTGGGCCTTGCGGAAGA 60.679 57.895 19.23 0.00 0.00 2.87
69 70 1.937546 GACATTGGGCCTTGCGGAAG 61.938 60.000 10.08 10.08 0.00 3.46
70 71 1.976474 GACATTGGGCCTTGCGGAA 60.976 57.895 4.53 0.00 0.00 4.30
71 72 2.361104 GACATTGGGCCTTGCGGA 60.361 61.111 4.53 0.00 0.00 5.54
72 73 1.978617 AAGACATTGGGCCTTGCGG 60.979 57.895 4.53 0.00 0.00 5.69
73 74 1.213537 CAAGACATTGGGCCTTGCG 59.786 57.895 4.53 0.00 32.16 4.85
74 75 0.529378 CTCAAGACATTGGGCCTTGC 59.471 55.000 4.53 0.00 37.71 4.01
80 81 3.645884 CTGTTTTGCTCAAGACATTGGG 58.354 45.455 6.46 0.00 40.14 4.12
81 82 3.054878 GCTGTTTTGCTCAAGACATTGG 58.945 45.455 6.46 0.00 35.33 3.16
82 83 3.973657 AGCTGTTTTGCTCAAGACATTG 58.026 40.909 6.46 0.00 39.34 2.82
83 84 4.340381 AGAAGCTGTTTTGCTCAAGACATT 59.660 37.500 6.46 0.52 43.24 2.71
84 85 3.887716 AGAAGCTGTTTTGCTCAAGACAT 59.112 39.130 6.46 0.00 43.24 3.06
85 86 3.065786 CAGAAGCTGTTTTGCTCAAGACA 59.934 43.478 5.95 5.95 43.24 3.41
86 87 3.625938 CAGAAGCTGTTTTGCTCAAGAC 58.374 45.455 0.00 0.00 43.24 3.01
87 88 2.033801 GCAGAAGCTGTTTTGCTCAAGA 59.966 45.455 0.00 0.00 43.24 3.02
88 89 2.391879 GCAGAAGCTGTTTTGCTCAAG 58.608 47.619 0.00 0.00 43.24 3.02
89 90 1.067516 GGCAGAAGCTGTTTTGCTCAA 59.932 47.619 10.54 0.00 43.24 3.02
90 91 0.670162 GGCAGAAGCTGTTTTGCTCA 59.330 50.000 10.54 0.00 43.24 4.26
91 92 0.670162 TGGCAGAAGCTGTTTTGCTC 59.330 50.000 10.54 3.95 43.24 4.26
92 93 0.386838 GTGGCAGAAGCTGTTTTGCT 59.613 50.000 10.54 0.00 46.40 3.91
93 94 0.598419 GGTGGCAGAAGCTGTTTTGC 60.598 55.000 0.00 0.00 41.70 3.68
94 95 0.318107 CGGTGGCAGAAGCTGTTTTG 60.318 55.000 0.00 0.00 41.70 2.44
95 96 0.465460 TCGGTGGCAGAAGCTGTTTT 60.465 50.000 0.00 0.00 41.70 2.43
96 97 0.886490 CTCGGTGGCAGAAGCTGTTT 60.886 55.000 0.00 0.00 41.70 2.83
97 98 1.302033 CTCGGTGGCAGAAGCTGTT 60.302 57.895 0.00 0.00 41.70 3.16
98 99 2.345244 CTCGGTGGCAGAAGCTGT 59.655 61.111 0.00 0.00 41.70 4.40
99 100 2.435586 CCTCGGTGGCAGAAGCTG 60.436 66.667 0.00 0.00 41.70 4.24
108 109 2.184830 CATGAGCATGCCTCGGTGG 61.185 63.158 15.66 0.00 43.82 4.61
109 110 2.184830 CCATGAGCATGCCTCGGTG 61.185 63.158 15.66 12.97 43.82 4.94
110 111 1.913951 TTCCATGAGCATGCCTCGGT 61.914 55.000 15.66 0.00 43.82 4.69
134 135 7.665561 TTTGCTTTGTTATTAAGGAAATGGC 57.334 32.000 0.00 0.00 37.80 4.40
173 178 4.322057 AGTATTTTGTCAGCCCAATCCT 57.678 40.909 0.00 0.00 0.00 3.24
175 180 5.297029 GGAGTAGTATTTTGTCAGCCCAATC 59.703 44.000 0.00 0.00 0.00 2.67
176 181 5.193679 GGAGTAGTATTTTGTCAGCCCAAT 58.806 41.667 0.00 0.00 0.00 3.16
177 182 4.566907 GGGAGTAGTATTTTGTCAGCCCAA 60.567 45.833 0.00 0.00 0.00 4.12
178 183 3.054655 GGGAGTAGTATTTTGTCAGCCCA 60.055 47.826 0.00 0.00 0.00 5.36
179 184 3.200165 AGGGAGTAGTATTTTGTCAGCCC 59.800 47.826 0.00 0.00 0.00 5.19
180 185 4.443621 GAGGGAGTAGTATTTTGTCAGCC 58.556 47.826 0.00 0.00 0.00 4.85
181 186 4.443621 GGAGGGAGTAGTATTTTGTCAGC 58.556 47.826 0.00 0.00 0.00 4.26
197 205 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
199 207 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
216 224 9.847224 TTTGTAGTGGAATCTCTAAAAAGACTT 57.153 29.630 0.00 0.00 28.58 3.01
217 225 9.274206 GTTTGTAGTGGAATCTCTAAAAAGACT 57.726 33.333 3.22 0.00 30.99 3.24
218 226 9.274206 AGTTTGTAGTGGAATCTCTAAAAAGAC 57.726 33.333 3.22 0.00 30.99 3.01
225 233 8.618677 CGTATGTAGTTTGTAGTGGAATCTCTA 58.381 37.037 0.00 0.00 0.00 2.43
226 234 7.416438 CCGTATGTAGTTTGTAGTGGAATCTCT 60.416 40.741 0.00 0.00 0.00 3.10
227 235 6.696148 CCGTATGTAGTTTGTAGTGGAATCTC 59.304 42.308 0.00 0.00 0.00 2.75
228 236 6.379133 TCCGTATGTAGTTTGTAGTGGAATCT 59.621 38.462 0.00 0.00 0.00 2.40
229 237 6.567050 TCCGTATGTAGTTTGTAGTGGAATC 58.433 40.000 0.00 0.00 0.00 2.52
230 238 6.534475 TCCGTATGTAGTTTGTAGTGGAAT 57.466 37.500 0.00 0.00 0.00 3.01
231 239 5.981088 TCCGTATGTAGTTTGTAGTGGAA 57.019 39.130 0.00 0.00 0.00 3.53
232 240 5.419788 ACATCCGTATGTAGTTTGTAGTGGA 59.580 40.000 0.00 0.00 44.66 4.02
233 241 5.657474 ACATCCGTATGTAGTTTGTAGTGG 58.343 41.667 0.00 0.00 44.66 4.00
275 283 6.369065 ACGGAAGAAAATGAGTGAATCTACAC 59.631 38.462 0.00 0.00 40.60 2.90
276 284 6.464222 ACGGAAGAAAATGAGTGAATCTACA 58.536 36.000 0.00 0.00 0.00 2.74
277 285 6.969828 ACGGAAGAAAATGAGTGAATCTAC 57.030 37.500 0.00 0.00 0.00 2.59
278 286 8.258007 ACATACGGAAGAAAATGAGTGAATCTA 58.742 33.333 0.00 0.00 0.00 1.98
279 287 7.106239 ACATACGGAAGAAAATGAGTGAATCT 58.894 34.615 0.00 0.00 0.00 2.40
280 288 7.308782 ACATACGGAAGAAAATGAGTGAATC 57.691 36.000 0.00 0.00 0.00 2.52
281 289 8.041323 ACTACATACGGAAGAAAATGAGTGAAT 58.959 33.333 0.00 0.00 0.00 2.57
282 290 7.383687 ACTACATACGGAAGAAAATGAGTGAA 58.616 34.615 0.00 0.00 0.00 3.18
283 291 6.931838 ACTACATACGGAAGAAAATGAGTGA 58.068 36.000 0.00 0.00 0.00 3.41
284 292 6.255887 GGACTACATACGGAAGAAAATGAGTG 59.744 42.308 0.00 0.00 0.00 3.51
285 293 6.070995 TGGACTACATACGGAAGAAAATGAGT 60.071 38.462 0.00 0.00 0.00 3.41
286 294 6.338146 TGGACTACATACGGAAGAAAATGAG 58.662 40.000 0.00 0.00 0.00 2.90
287 295 6.288941 TGGACTACATACGGAAGAAAATGA 57.711 37.500 0.00 0.00 0.00 2.57
288 296 7.926555 ACTATGGACTACATACGGAAGAAAATG 59.073 37.037 0.00 0.00 41.03 2.32
289 297 8.019656 ACTATGGACTACATACGGAAGAAAAT 57.980 34.615 0.00 0.00 41.03 1.82
290 298 7.414222 ACTATGGACTACATACGGAAGAAAA 57.586 36.000 0.00 0.00 41.03 2.29
291 299 7.123098 TCAACTATGGACTACATACGGAAGAAA 59.877 37.037 0.00 0.00 41.03 2.52
292 300 6.604396 TCAACTATGGACTACATACGGAAGAA 59.396 38.462 0.00 0.00 41.03 2.52
293 301 6.124340 TCAACTATGGACTACATACGGAAGA 58.876 40.000 0.00 0.00 41.03 2.87
294 302 6.387041 TCAACTATGGACTACATACGGAAG 57.613 41.667 0.00 0.00 41.03 3.46
295 303 6.778834 TTCAACTATGGACTACATACGGAA 57.221 37.500 0.00 0.00 41.03 4.30
296 304 6.776116 AGATTCAACTATGGACTACATACGGA 59.224 38.462 0.00 0.00 41.03 4.69
297 305 6.982852 AGATTCAACTATGGACTACATACGG 58.017 40.000 0.00 0.00 41.03 4.02
298 306 7.877003 AGAGATTCAACTATGGACTACATACG 58.123 38.462 0.00 0.00 41.03 3.06
305 313 9.660180 GTCTTTTTAGAGATTCAACTATGGACT 57.340 33.333 0.00 0.00 0.00 3.85
306 314 9.660180 AGTCTTTTTAGAGATTCAACTATGGAC 57.340 33.333 0.00 0.00 0.00 4.02
324 332 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
325 333 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
326 334 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
327 335 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
328 336 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
329 337 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
330 338 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
331 339 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
332 340 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
333 341 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
334 342 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
335 343 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
336 344 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
337 345 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
338 346 3.266772 TGTACTACTCCCTCCGTTCCTAA 59.733 47.826 0.00 0.00 0.00 2.69
339 347 2.846206 TGTACTACTCCCTCCGTTCCTA 59.154 50.000 0.00 0.00 0.00 2.94
340 348 1.637553 TGTACTACTCCCTCCGTTCCT 59.362 52.381 0.00 0.00 0.00 3.36
341 349 1.747924 GTGTACTACTCCCTCCGTTCC 59.252 57.143 0.00 0.00 0.00 3.62
342 350 2.422832 CTGTGTACTACTCCCTCCGTTC 59.577 54.545 0.00 0.00 0.00 3.95
343 351 2.444421 CTGTGTACTACTCCCTCCGTT 58.556 52.381 0.00 0.00 0.00 4.44
344 352 1.954258 GCTGTGTACTACTCCCTCCGT 60.954 57.143 0.00 0.00 0.00 4.69
345 353 0.739561 GCTGTGTACTACTCCCTCCG 59.260 60.000 0.00 0.00 0.00 4.63
346 354 1.112950 GGCTGTGTACTACTCCCTCC 58.887 60.000 0.00 0.00 0.00 4.30
347 355 2.146920 AGGCTGTGTACTACTCCCTC 57.853 55.000 0.00 0.00 0.00 4.30
348 356 2.625282 AAGGCTGTGTACTACTCCCT 57.375 50.000 0.00 0.00 33.72 4.20
349 357 3.697619 AAAAGGCTGTGTACTACTCCC 57.302 47.619 0.00 0.00 0.00 4.30
394 402 5.932303 GCTGTGTACTAGTGATCCTCAAAAA 59.068 40.000 5.39 0.00 0.00 1.94
395 403 5.246203 AGCTGTGTACTAGTGATCCTCAAAA 59.754 40.000 5.39 0.00 0.00 2.44
396 404 4.772624 AGCTGTGTACTAGTGATCCTCAAA 59.227 41.667 5.39 0.00 0.00 2.69
397 405 4.344978 AGCTGTGTACTAGTGATCCTCAA 58.655 43.478 5.39 0.00 0.00 3.02
398 406 3.969553 AGCTGTGTACTAGTGATCCTCA 58.030 45.455 5.39 0.00 0.00 3.86
399 407 4.517453 CCTAGCTGTGTACTAGTGATCCTC 59.483 50.000 5.39 0.00 36.23 3.71
400 408 4.465886 CCTAGCTGTGTACTAGTGATCCT 58.534 47.826 5.39 0.00 36.23 3.24
401 409 3.004944 GCCTAGCTGTGTACTAGTGATCC 59.995 52.174 5.39 0.00 36.23 3.36
402 410 3.886505 AGCCTAGCTGTGTACTAGTGATC 59.113 47.826 5.39 0.00 37.57 2.92
403 411 3.904717 AGCCTAGCTGTGTACTAGTGAT 58.095 45.455 5.39 0.00 37.57 3.06
404 412 3.367646 AGCCTAGCTGTGTACTAGTGA 57.632 47.619 5.39 0.00 37.57 3.41
416 424 4.275781 GCTCCTCTCAGCCTAGCT 57.724 61.111 0.00 0.00 40.77 3.32
422 430 2.203181 GCATGGGCTCCTCTCAGC 60.203 66.667 0.00 0.00 38.84 4.26
423 431 2.509916 GGCATGGGCTCCTCTCAG 59.490 66.667 0.00 0.00 40.87 3.35
424 432 3.473647 CGGCATGGGCTCCTCTCA 61.474 66.667 0.00 0.00 40.87 3.27
425 433 4.247380 CCGGCATGGGCTCCTCTC 62.247 72.222 0.00 0.00 40.87 3.20
439 447 3.910914 TTTGGGACGTGGATGCCGG 62.911 63.158 0.00 0.00 31.31 6.13
513 522 1.595794 ACGTGCGGTGTTTTTCTAGTG 59.404 47.619 0.00 0.00 0.00 2.74
518 527 1.009335 GGGACGTGCGGTGTTTTTC 60.009 57.895 0.00 0.00 0.00 2.29
566 575 0.548031 AGTGGCTATGACATGTGGGG 59.452 55.000 1.15 0.00 0.00 4.96
581 590 6.405176 GGAGAAGCCAGATTCAAAATTAGTGG 60.405 42.308 0.00 0.00 36.34 4.00
908 923 2.890945 GGGGATTTGTATTTATGCGCCT 59.109 45.455 4.18 0.00 0.00 5.52
935 950 1.912731 TGGTCTCGATTGGGATTTGGA 59.087 47.619 0.00 0.00 0.00 3.53
979 995 1.148310 CCTCTCTCTCGATCTCTCGC 58.852 60.000 0.00 0.00 44.65 5.03
1285 1311 2.010817 GCAGCAAAGAACAACGGCG 61.011 57.895 4.80 4.80 0.00 6.46
1293 1319 3.726517 GCTCGCGGCAGCAAAGAA 61.727 61.111 14.30 0.00 45.49 2.52
1317 1346 1.084370 CCTTCGCCTGATTCGACCAC 61.084 60.000 0.00 0.00 35.51 4.16
1319 1348 1.521681 CCCTTCGCCTGATTCGACC 60.522 63.158 0.00 0.00 35.51 4.79
1356 1385 1.601412 GCAGAAGGAAACAGCAACAGC 60.601 52.381 0.00 0.00 0.00 4.40
1357 1386 1.952296 AGCAGAAGGAAACAGCAACAG 59.048 47.619 0.00 0.00 0.00 3.16
1368 1397 7.935755 CCAAATCTAGATATTTCAGCAGAAGGA 59.064 37.037 5.46 0.00 34.71 3.36
1411 1441 9.472361 AGAAAACAGAATCACAATCAAATTGAG 57.528 29.630 1.10 0.00 42.83 3.02
1602 1633 0.176680 ATCTGGGTCAGACATGCGTC 59.823 55.000 2.17 0.00 43.63 5.19
1645 1676 3.492337 TCATTAAGCAGGGGAAACGTTT 58.508 40.909 14.57 14.57 0.00 3.60
1689 1720 3.054361 ACATCACAGTTAAAGCTAGGGGG 60.054 47.826 0.00 0.00 0.00 5.40
1781 1813 2.352503 GCACAAAGCATACACCCTTG 57.647 50.000 0.00 0.00 44.79 3.61
1891 1923 2.957680 ACATGAATGCACACAAACCTCA 59.042 40.909 0.00 0.00 0.00 3.86
1902 1934 8.763356 GTGATTAAAAACAAGAACATGAATGCA 58.237 29.630 0.00 0.00 0.00 3.96
1931 1963 5.072329 ACAGGGAGTATTATGCATGTTAGCT 59.928 40.000 10.16 0.81 31.15 3.32
1934 1966 6.493189 TGACAGGGAGTATTATGCATGTTA 57.507 37.500 10.16 0.00 35.62 2.41
1989 2022 9.573166 TTATCAATATTTTCCCACTACAGATGG 57.427 33.333 0.00 0.00 36.94 3.51
2078 2111 7.134842 AGGAAACATCAAATTGAAGGGGATAT 58.865 34.615 0.00 0.00 0.00 1.63
2080 2113 5.344566 AGGAAACATCAAATTGAAGGGGAT 58.655 37.500 0.00 0.00 0.00 3.85
2092 2125 7.890515 TGTATTACAATGCAAGGAAACATCAA 58.109 30.769 0.00 0.00 0.00 2.57
2119 2152 6.753897 CTTTCTGTTCACCAACAATAAAGC 57.246 37.500 8.36 0.00 42.13 3.51
2159 2192 1.066143 ACCGTCTTCCCATACAGCTTG 60.066 52.381 0.00 0.00 0.00 4.01
2192 2226 6.446781 AAATACTACTTACGCTCAGTGCTA 57.553 37.500 0.00 0.00 40.11 3.49
2315 2349 5.541484 ACAAGGATGCTCAGGAAATTTTTCT 59.459 36.000 3.28 0.00 37.35 2.52
2324 2358 5.150715 ACATATCTACAAGGATGCTCAGGA 58.849 41.667 0.00 0.00 0.00 3.86
2541 2669 4.882671 AAATACTCATGCATTCACCGTC 57.117 40.909 0.00 0.00 0.00 4.79
2542 2670 6.318648 ACAATAAATACTCATGCATTCACCGT 59.681 34.615 0.00 0.00 0.00 4.83
2544 2672 7.706159 TCACAATAAATACTCATGCATTCACC 58.294 34.615 0.00 0.00 0.00 4.02
2545 2673 9.740239 AATCACAATAAATACTCATGCATTCAC 57.260 29.630 0.00 0.00 0.00 3.18
2563 2939 9.669353 GAAAGACATGCGATTATTAATCACAAT 57.331 29.630 15.00 5.95 37.78 2.71
2579 2955 6.255670 TCGTTGTATACTGATGAAAGACATGC 59.744 38.462 4.17 0.00 39.56 4.06
2597 2973 4.095782 GGAGCAAGCCATTTAATCGTTGTA 59.904 41.667 0.00 0.00 0.00 2.41
2602 2978 2.684881 AGTGGAGCAAGCCATTTAATCG 59.315 45.455 0.00 0.00 40.68 3.34
2765 3142 1.462283 CGGGAGATTTATGCGCATGAG 59.538 52.381 32.48 7.03 0.00 2.90
2770 3147 1.160329 ACAGCGGGAGATTTATGCGC 61.160 55.000 0.00 0.00 0.00 6.09
2771 3148 1.261619 GAACAGCGGGAGATTTATGCG 59.738 52.381 0.00 0.00 0.00 4.73
2779 3156 0.537188 GAATCCAGAACAGCGGGAGA 59.463 55.000 0.00 0.00 44.26 3.71
2783 3160 0.392193 AGCAGAATCCAGAACAGCGG 60.392 55.000 0.00 0.00 0.00 5.52
2789 3166 3.055094 GGTGTCCTTAGCAGAATCCAGAA 60.055 47.826 0.00 0.00 0.00 3.02
2790 3167 2.501723 GGTGTCCTTAGCAGAATCCAGA 59.498 50.000 0.00 0.00 0.00 3.86
2798 3175 3.034635 AGGTAGATGGTGTCCTTAGCAG 58.965 50.000 0.00 0.00 0.00 4.24
2833 3210 6.605594 CCCCAGGCAAAATAGTCATACTTAAA 59.394 38.462 0.00 0.00 0.00 1.52
2893 3270 1.009449 TGCGGCAAAAACACGTAGC 60.009 52.632 0.00 0.00 0.00 3.58
2954 3331 0.803768 CGAAGATCTGCACACGAGGG 60.804 60.000 0.51 0.00 0.00 4.30
2957 3334 0.313987 ACACGAAGATCTGCACACGA 59.686 50.000 0.51 0.00 0.00 4.35
3277 3733 3.441496 AACACACAACTTCATTGCCAG 57.559 42.857 0.00 0.00 42.62 4.85
3309 3765 1.754226 AGCCTGGAAACAAAGCGAAAA 59.246 42.857 0.00 0.00 42.82 2.29
3312 3768 0.179032 TGAGCCTGGAAACAAAGCGA 60.179 50.000 0.00 0.00 42.82 4.93
3323 3779 1.093159 GTCAATTCTGCTGAGCCTGG 58.907 55.000 0.23 0.00 0.00 4.45
3475 3934 9.495754 GAAGTTTAAGATGTGAGCATTTCATAC 57.504 33.333 0.00 0.00 38.29 2.39
3476 3935 9.453572 AGAAGTTTAAGATGTGAGCATTTCATA 57.546 29.630 0.00 0.00 38.29 2.15
3477 3936 8.345724 AGAAGTTTAAGATGTGAGCATTTCAT 57.654 30.769 0.00 0.00 38.29 2.57
3478 3937 7.750229 AGAAGTTTAAGATGTGAGCATTTCA 57.250 32.000 0.00 0.00 35.07 2.69
3583 4210 5.163405 TGCAGTAGTCAAACTTCTTCACTCT 60.163 40.000 0.00 0.00 0.00 3.24
3925 4690 4.081406 AGCAGCAAACTAAACATCCATCA 58.919 39.130 0.00 0.00 0.00 3.07
3926 4691 4.708726 AGCAGCAAACTAAACATCCATC 57.291 40.909 0.00 0.00 0.00 3.51
3927 4692 5.473066 AAAGCAGCAAACTAAACATCCAT 57.527 34.783 0.00 0.00 0.00 3.41
4038 4806 5.994668 GCTCTAAAAGTGCAAGGCTATAGAT 59.005 40.000 3.21 0.00 35.03 1.98
4137 4905 6.070251 TGGCTAAGATGGTATATGGTGGTATG 60.070 42.308 0.00 0.00 0.00 2.39
4145 4913 4.263462 TGGGCTTGGCTAAGATGGTATATG 60.263 45.833 14.82 0.00 35.92 1.78
4177 4945 4.392921 AGAGATCCCAATACACAGTTCG 57.607 45.455 0.00 0.00 0.00 3.95
4198 4966 4.087182 TGAAGGTACAAACACCACCAAAA 58.913 39.130 0.00 0.00 41.40 2.44
4226 4994 4.808558 TCTATGCTTGTTTCACAATTGCC 58.191 39.130 5.05 0.00 37.48 4.52
4261 5029 7.882791 TGTGATCAATACCCTTCGCATATATTT 59.117 33.333 0.00 0.00 0.00 1.40
4332 5127 6.643770 CCATACTGGCAAATATTTTCAGATGC 59.356 38.462 24.09 14.22 0.00 3.91
4333 5128 7.719483 ACCATACTGGCAAATATTTTCAGATG 58.281 34.615 24.09 20.96 42.67 2.90
4596 5409 6.685657 AGGAAAAATAAGAGAAGCAGCAAAG 58.314 36.000 0.00 0.00 0.00 2.77
4601 5414 5.178797 TCCGAGGAAAAATAAGAGAAGCAG 58.821 41.667 0.00 0.00 0.00 4.24
4744 5568 8.856490 AGTTAAGTTCACAAATCACAATCAAC 57.144 30.769 0.00 0.00 0.00 3.18
4749 5573 7.120579 ACACTGAGTTAAGTTCACAAATCACAA 59.879 33.333 0.00 0.00 0.00 3.33
4750 5574 6.597672 ACACTGAGTTAAGTTCACAAATCACA 59.402 34.615 0.00 0.00 0.00 3.58
4751 5575 7.016361 ACACTGAGTTAAGTTCACAAATCAC 57.984 36.000 0.00 0.00 0.00 3.06
4752 5576 7.441157 CCTACACTGAGTTAAGTTCACAAATCA 59.559 37.037 0.00 0.00 0.00 2.57
4753 5577 7.441458 ACCTACACTGAGTTAAGTTCACAAATC 59.559 37.037 0.00 0.00 0.00 2.17
4754 5578 7.280356 ACCTACACTGAGTTAAGTTCACAAAT 58.720 34.615 0.00 0.00 0.00 2.32
4755 5579 6.646267 ACCTACACTGAGTTAAGTTCACAAA 58.354 36.000 0.00 0.00 0.00 2.83
4832 5659 9.092876 CTCAGAGTAATTAAACAGAGCCTAAAG 57.907 37.037 0.00 0.00 0.00 1.85
4987 5814 3.730215 TGGCAAATACAAGGCTCCTTA 57.270 42.857 0.11 0.00 34.50 2.69
5091 5918 6.094193 TCGAGATATGTCATGCAGATTCTT 57.906 37.500 0.29 0.00 0.00 2.52
5158 5985 9.764363 TCATAGGCTTGTAATAATACAACAGAG 57.236 33.333 0.00 0.00 44.90 3.35
5226 6053 4.973168 AGTTTGAGAAGTTGTCTGGCATA 58.027 39.130 1.30 0.00 36.41 3.14
5759 6635 8.922931 AACATTCCAGCAAAATTAGGAAAATT 57.077 26.923 0.00 0.00 42.83 1.82
5907 6783 4.925646 GCATCAGGTTTGGAGAAACATTTC 59.074 41.667 0.00 0.00 42.95 2.17
6098 6975 3.492313 CAAGGCTTGTTCGACAAATAGC 58.508 45.455 19.07 0.00 37.69 2.97
6130 7007 3.679980 CCTGCAGAGTACAACATACACAC 59.320 47.826 17.39 0.00 0.00 3.82
6138 7015 1.071605 CTTCGCCTGCAGAGTACAAC 58.928 55.000 17.39 0.00 0.00 3.32
6181 7060 1.399089 CATCACATCAGTTCATGCGCA 59.601 47.619 14.96 14.96 0.00 6.09
6298 7178 4.196193 CAATACAAGCCCCGAATTGAGTA 58.804 43.478 0.00 0.00 30.77 2.59
6351 7232 5.484715 TGGGTGAAACTGTACTACAATAGC 58.515 41.667 0.00 0.00 36.74 2.97
6404 7285 8.581057 ACATATCGCAGTACAAAGAGAAATAG 57.419 34.615 0.00 0.00 0.00 1.73
6407 7288 7.815549 TGTTACATATCGCAGTACAAAGAGAAA 59.184 33.333 0.00 0.00 0.00 2.52
6436 7323 1.344763 GCCGCTACAACTATCTCCCAT 59.655 52.381 0.00 0.00 0.00 4.00
6602 7497 3.181377 CACAAATTTTACACAACGCGCAT 59.819 39.130 5.73 0.00 0.00 4.73
6672 7568 5.510323 CCGCCGTTAATAAGTTAAAGCAAAG 59.490 40.000 0.00 0.00 33.87 2.77
6686 7582 2.480845 GAATAGCTCACCGCCGTTAAT 58.519 47.619 0.00 0.00 40.39 1.40
6743 7653 4.391155 TCGCTAAAACAAGTGGTGGTATT 58.609 39.130 0.00 0.00 0.00 1.89
6753 7663 3.374058 CCAGGTACCATCGCTAAAACAAG 59.626 47.826 15.94 0.00 0.00 3.16
6773 7683 8.779354 AAACTTAAAATAACAAAACTGTGCCA 57.221 26.923 0.00 0.00 0.00 4.92
6811 7721 8.532977 AACTGCGCAAAATTCTAACAAAATAT 57.467 26.923 13.05 0.00 0.00 1.28
6812 7722 7.649705 TGAACTGCGCAAAATTCTAACAAAATA 59.350 29.630 22.13 3.95 0.00 1.40
6839 7767 1.878102 GCCACCGTCTGAACTCACAAT 60.878 52.381 0.00 0.00 0.00 2.71
6866 7794 4.693566 TCTGAAAATTTACGACCTGCGAAT 59.306 37.500 0.00 0.00 44.57 3.34
6886 7814 4.209080 GTGCCCTTTCGTCAAAATTTTCTG 59.791 41.667 0.00 0.00 0.00 3.02
6900 7828 2.802247 GCAAACAAAGATGTGCCCTTTC 59.198 45.455 0.00 0.00 40.46 2.62
6937 7865 6.820152 ACCGGAATTTGGTAAGATGTAGTAAC 59.180 38.462 9.46 0.00 38.15 2.50
6951 7939 3.639561 CCCCCTAATTTACCGGAATTTGG 59.360 47.826 9.46 14.71 39.81 3.28
6968 7956 0.995024 CATGTCTTTGGTCTCCCCCT 59.005 55.000 0.00 0.00 0.00 4.79
6969 7957 0.698818 ACATGTCTTTGGTCTCCCCC 59.301 55.000 0.00 0.00 0.00 5.40
6977 7965 2.981805 CAACGCATCAACATGTCTTTGG 59.018 45.455 0.00 0.00 31.86 3.28
6978 7966 2.406024 GCAACGCATCAACATGTCTTTG 59.594 45.455 0.00 0.00 31.86 2.77
7011 7999 2.564553 CTACCTGCGGTCAGTGCTCC 62.565 65.000 3.45 0.00 38.66 4.70
7107 8104 1.735920 CCAGTGAGACAGACAGCGC 60.736 63.158 0.00 0.00 0.00 5.92
7175 8172 1.376812 GGGAAGCCGAAACGTGGAT 60.377 57.895 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.