Multiple sequence alignment - TraesCS2D01G497700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G497700 chr2D 100.000 3995 0 0 1 3995 593407176 593411170 0.000000e+00 7378.0
1 TraesCS2D01G497700 chr2D 80.237 759 84 33 2282 3013 593372627 593373346 9.900000e-141 510.0
2 TraesCS2D01G497700 chr2D 80.551 581 66 29 1090 1654 593370586 593371135 1.730000e-108 403.0
3 TraesCS2D01G497700 chr2D 98.592 213 2 1 178 390 31669768 31669557 3.770000e-100 375.0
4 TraesCS2D01G497700 chr2D 83.562 146 19 4 1 142 119835394 119835250 9.010000e-27 132.0
5 TraesCS2D01G497700 chr2D 89.855 69 7 0 2012 2080 437952131 437952199 5.500000e-14 89.8
6 TraesCS2D01G497700 chr2D 89.796 49 5 0 1791 1839 153048930 153048978 3.330000e-06 63.9
7 TraesCS2D01G497700 chr2B 89.866 1717 116 26 2173 3858 719534366 719532677 0.000000e+00 2154.0
8 TraesCS2D01G497700 chr2B 92.112 1141 51 15 524 1656 719544589 719543480 0.000000e+00 1572.0
9 TraesCS2D01G497700 chr2B 80.895 581 66 18 2282 2844 719556363 719555810 2.220000e-112 416.0
10 TraesCS2D01G497700 chr2B 78.231 735 94 41 940 1654 719558418 719557730 1.030000e-110 411.0
11 TraesCS2D01G497700 chr2B 91.250 240 7 1 1948 2187 719534614 719534389 8.330000e-82 315.0
12 TraesCS2D01G497700 chr2B 93.333 180 9 3 1 177 719545213 719545034 3.060000e-66 263.0
13 TraesCS2D01G497700 chr2B 80.165 242 40 6 2827 3063 719549949 719549711 1.480000e-39 174.0
14 TraesCS2D01G497700 chr2B 92.982 114 6 1 1646 1759 719543458 719543347 8.880000e-37 165.0
15 TraesCS2D01G497700 chr2B 91.453 117 10 0 390 506 719545042 719544926 1.150000e-35 161.0
16 TraesCS2D01G497700 chr2B 93.243 74 3 2 1791 1864 719543006 719542935 1.520000e-19 108.0
17 TraesCS2D01G497700 chr2B 78.102 137 18 7 42 177 719545563 719545438 4.280000e-10 76.8
18 TraesCS2D01G497700 chr2B 92.453 53 2 1 3908 3960 719532674 719532624 1.540000e-09 75.0
19 TraesCS2D01G497700 chr2B 87.755 49 6 0 1791 1839 211010992 211011040 1.550000e-04 58.4
20 TraesCS2D01G497700 chr2A 92.269 1384 68 16 390 1759 728146206 728144848 0.000000e+00 1927.0
21 TraesCS2D01G497700 chr2A 91.467 1043 52 5 2003 3012 728143799 728142761 0.000000e+00 1399.0
22 TraesCS2D01G497700 chr2A 91.723 447 25 5 3416 3858 728142269 728141831 9.490000e-171 610.0
23 TraesCS2D01G497700 chr2A 80.330 788 94 34 2282 3043 728229916 728229164 1.260000e-149 540.0
24 TraesCS2D01G497700 chr2A 77.143 735 98 43 943 1654 728232098 728231411 2.930000e-96 363.0
25 TraesCS2D01G497700 chr2A 88.119 303 17 8 3083 3375 728142568 728142275 3.820000e-90 342.0
26 TraesCS2D01G497700 chr2A 85.616 146 16 5 1 142 122148248 122148104 8.950000e-32 148.0
27 TraesCS2D01G497700 chr2A 92.683 41 0 3 1762 1802 56105298 56105335 5.580000e-04 56.5
28 TraesCS2D01G497700 chr1D 99.061 213 1 1 177 389 64209772 64209983 8.100000e-102 381.0
29 TraesCS2D01G497700 chr1D 100.000 34 0 0 1760 1793 492948100 492948133 3.330000e-06 63.9
30 TraesCS2D01G497700 chr6D 98.605 215 1 2 177 391 451070624 451070412 2.910000e-101 379.0
31 TraesCS2D01G497700 chr6D 98.585 212 2 1 178 389 114768407 114768197 1.360000e-99 374.0
32 TraesCS2D01G497700 chr6D 98.585 212 1 2 178 389 450007470 450007679 1.360000e-99 374.0
33 TraesCS2D01G497700 chr5D 98.148 216 3 1 178 393 241421027 241420813 3.770000e-100 375.0
34 TraesCS2D01G497700 chr5D 97.685 216 3 2 177 392 481071442 481071229 1.750000e-98 370.0
35 TraesCS2D01G497700 chr5D 80.702 114 18 4 3350 3460 556883951 556884063 7.110000e-13 86.1
36 TraesCS2D01G497700 chr5D 92.857 42 2 1 1760 1800 209667139 209667098 4.310000e-05 60.2
37 TraesCS2D01G497700 chr5D 88.462 52 3 3 1760 1811 366675566 366675518 4.310000e-05 60.2
38 TraesCS2D01G497700 chr5D 90.909 44 3 1 1760 1803 180739402 180739444 1.550000e-04 58.4
39 TraesCS2D01G497700 chr3D 98.592 213 2 1 177 389 554922067 554922278 3.770000e-100 375.0
40 TraesCS2D01G497700 chr7D 98.131 214 3 1 177 390 604582740 604582952 4.880000e-99 372.0
41 TraesCS2D01G497700 chr3A 94.118 68 3 1 2012 2078 703411703 703411770 7.060000e-18 102.0
42 TraesCS2D01G497700 chrUn 92.754 69 5 0 2012 2080 325990933 325991001 2.540000e-17 100.0
43 TraesCS2D01G497700 chrUn 92.754 69 5 0 2012 2080 373351145 373351077 2.540000e-17 100.0
44 TraesCS2D01G497700 chr1A 92.188 64 5 0 2012 2075 48577152 48577089 1.530000e-14 91.6
45 TraesCS2D01G497700 chr1B 89.855 69 7 0 2012 2080 68069340 68069272 5.500000e-14 89.8
46 TraesCS2D01G497700 chr6B 88.571 70 7 1 2012 2081 23244688 23244620 2.560000e-12 84.2
47 TraesCS2D01G497700 chr6A 100.000 34 0 0 1760 1793 548412733 548412700 3.330000e-06 63.9
48 TraesCS2D01G497700 chr7A 100.000 33 0 0 1760 1792 682253530 682253562 1.200000e-05 62.1
49 TraesCS2D01G497700 chr7A 89.583 48 2 3 1760 1807 80068864 80068820 1.550000e-04 58.4
50 TraesCS2D01G497700 chr5A 100.000 33 0 0 1760 1792 574936412 574936444 1.200000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G497700 chr2D 593407176 593411170 3994 False 7378.000000 7378 100.000000 1 3995 1 chr2D.!!$F3 3994
1 TraesCS2D01G497700 chr2D 593370586 593373346 2760 False 456.500000 510 80.394000 1090 3013 2 chr2D.!!$F4 1923
2 TraesCS2D01G497700 chr2B 719532624 719534614 1990 True 848.000000 2154 91.189667 1948 3960 3 chr2B.!!$R2 2012
3 TraesCS2D01G497700 chr2B 719555810 719558418 2608 True 413.500000 416 79.563000 940 2844 2 chr2B.!!$R4 1904
4 TraesCS2D01G497700 chr2B 719542935 719545563 2628 True 390.966667 1572 90.204167 1 1864 6 chr2B.!!$R3 1863
5 TraesCS2D01G497700 chr2A 728141831 728146206 4375 True 1069.500000 1927 90.894500 390 3858 4 chr2A.!!$R2 3468
6 TraesCS2D01G497700 chr2A 728229164 728232098 2934 True 451.500000 540 78.736500 943 3043 2 chr2A.!!$R3 2100

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 559 0.034767 TTGCCTGCTCCCTTCTCATG 60.035 55.0 0.0 0.0 0.0 3.07 F
355 709 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.0 0.0 0.0 0.0 3.51 F
1105 1800 0.108615 AAGAGATGACGTTCGGGCAG 60.109 55.0 0.0 0.0 0.0 4.85 F
1481 2202 0.746659 GTCACCCTGCTGCTGTTTTT 59.253 50.0 0.0 0.0 0.0 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1279 1974 0.108186 CCGCCATTCTGCTACTGTCA 60.108 55.0 0.00 0.00 0.00 3.58 R
2192 4469 0.449388 CGAAGACAAAGGGCATGCTC 59.551 55.0 18.92 15.06 0.00 4.26 R
2479 4904 0.033504 GAGGATCGAAATGGCCGCTA 59.966 55.0 0.00 0.00 0.00 4.26 R
3313 5914 0.255604 TCCCACTCGGTGTACGGATA 59.744 55.0 3.82 0.00 44.45 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 376 6.951062 TGTGATTGAATCAACACTTACCAA 57.049 33.333 9.78 5.68 41.69 3.67
44 395 3.879180 ATTGGGTGGGGTTGCGGTC 62.879 63.158 0.00 0.00 0.00 4.79
66 417 6.018669 GGTCAGTAAAAGGAAATAGAGCATCG 60.019 42.308 0.00 0.00 42.67 3.84
160 514 5.685520 ACAGAAAATAGAGGGGAGAAGAC 57.314 43.478 0.00 0.00 0.00 3.01
164 518 2.830651 ATAGAGGGGAGAAGACGTGT 57.169 50.000 0.00 0.00 0.00 4.49
165 519 1.835494 TAGAGGGGAGAAGACGTGTG 58.165 55.000 0.00 0.00 0.00 3.82
177 531 2.052590 CGTGTGTGCCGGTTTTCG 60.053 61.111 1.90 0.00 38.88 3.46
186 540 4.959446 CGGTTTTCGGACGAGACT 57.041 55.556 0.00 0.00 34.75 3.24
187 541 3.190337 CGGTTTTCGGACGAGACTT 57.810 52.632 0.00 0.00 34.75 3.01
188 542 0.782384 CGGTTTTCGGACGAGACTTG 59.218 55.000 0.00 0.00 34.75 3.16
189 543 0.511653 GGTTTTCGGACGAGACTTGC 59.488 55.000 0.00 0.00 0.00 4.01
190 544 0.511653 GTTTTCGGACGAGACTTGCC 59.488 55.000 0.00 0.00 0.00 4.52
191 545 0.391597 TTTTCGGACGAGACTTGCCT 59.608 50.000 0.00 0.00 0.00 4.75
192 546 0.319555 TTTCGGACGAGACTTGCCTG 60.320 55.000 0.00 0.00 0.00 4.85
193 547 2.765250 TTCGGACGAGACTTGCCTGC 62.765 60.000 0.00 0.00 0.00 4.85
194 548 2.659610 GGACGAGACTTGCCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
195 549 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
196 550 1.446966 GACGAGACTTGCCTGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
197 551 2.125350 CGAGACTTGCCTGCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
198 552 2.654079 CGAGACTTGCCTGCTCCCT 61.654 63.158 0.00 0.00 0.00 4.20
199 553 1.682257 GAGACTTGCCTGCTCCCTT 59.318 57.895 0.00 0.00 0.00 3.95
200 554 0.392327 GAGACTTGCCTGCTCCCTTC 60.392 60.000 0.00 0.00 0.00 3.46
201 555 0.839853 AGACTTGCCTGCTCCCTTCT 60.840 55.000 0.00 0.00 0.00 2.85
202 556 0.392327 GACTTGCCTGCTCCCTTCTC 60.392 60.000 0.00 0.00 0.00 2.87
203 557 1.130054 ACTTGCCTGCTCCCTTCTCA 61.130 55.000 0.00 0.00 0.00 3.27
204 558 0.255318 CTTGCCTGCTCCCTTCTCAT 59.745 55.000 0.00 0.00 0.00 2.90
205 559 0.034767 TTGCCTGCTCCCTTCTCATG 60.035 55.000 0.00 0.00 0.00 3.07
206 560 1.823041 GCCTGCTCCCTTCTCATGC 60.823 63.158 0.00 0.00 0.00 4.06
207 561 1.913722 CCTGCTCCCTTCTCATGCT 59.086 57.895 0.00 0.00 0.00 3.79
208 562 0.179051 CCTGCTCCCTTCTCATGCTC 60.179 60.000 0.00 0.00 0.00 4.26
209 563 0.179051 CTGCTCCCTTCTCATGCTCC 60.179 60.000 0.00 0.00 0.00 4.70
210 564 1.148048 GCTCCCTTCTCATGCTCCC 59.852 63.158 0.00 0.00 0.00 4.30
211 565 1.630126 GCTCCCTTCTCATGCTCCCA 61.630 60.000 0.00 0.00 0.00 4.37
212 566 1.138568 CTCCCTTCTCATGCTCCCAT 58.861 55.000 0.00 0.00 0.00 4.00
213 567 1.072015 CTCCCTTCTCATGCTCCCATC 59.928 57.143 0.00 0.00 0.00 3.51
214 568 0.110104 CCCTTCTCATGCTCCCATCC 59.890 60.000 0.00 0.00 0.00 3.51
215 569 0.250209 CCTTCTCATGCTCCCATCCG 60.250 60.000 0.00 0.00 0.00 4.18
216 570 0.467384 CTTCTCATGCTCCCATCCGT 59.533 55.000 0.00 0.00 0.00 4.69
217 571 0.178767 TTCTCATGCTCCCATCCGTG 59.821 55.000 0.00 0.00 0.00 4.94
218 572 1.890979 CTCATGCTCCCATCCGTGC 60.891 63.158 0.00 0.00 0.00 5.34
219 573 2.191375 CATGCTCCCATCCGTGCT 59.809 61.111 0.00 0.00 0.00 4.40
220 574 1.890979 CATGCTCCCATCCGTGCTC 60.891 63.158 0.00 0.00 0.00 4.26
221 575 3.112205 ATGCTCCCATCCGTGCTCC 62.112 63.158 0.00 0.00 0.00 4.70
222 576 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
223 577 4.227134 CTCCCATCCGTGCTCCCG 62.227 72.222 0.00 0.00 0.00 5.14
233 587 4.830765 TGCTCCCGCATACGTGGC 62.831 66.667 0.00 0.21 42.25 5.01
234 588 4.530857 GCTCCCGCATACGTGGCT 62.531 66.667 11.48 0.00 41.87 4.75
235 589 2.186903 CTCCCGCATACGTGGCTT 59.813 61.111 11.48 0.00 41.87 4.35
236 590 2.125310 TCCCGCATACGTGGCTTG 60.125 61.111 11.48 3.68 41.87 4.01
237 591 2.125310 CCCGCATACGTGGCTTGA 60.125 61.111 11.48 0.00 41.87 3.02
238 592 1.523711 CCCGCATACGTGGCTTGAT 60.524 57.895 11.48 0.00 41.87 2.57
239 593 1.095228 CCCGCATACGTGGCTTGATT 61.095 55.000 11.48 0.00 41.87 2.57
240 594 0.732571 CCGCATACGTGGCTTGATTT 59.267 50.000 11.48 0.00 35.59 2.17
241 595 1.531677 CCGCATACGTGGCTTGATTTG 60.532 52.381 11.48 0.00 35.59 2.32
242 596 1.396648 CGCATACGTGGCTTGATTTGA 59.603 47.619 11.48 0.00 33.53 2.69
243 597 2.032054 CGCATACGTGGCTTGATTTGAT 59.968 45.455 11.48 0.00 33.53 2.57
244 598 3.487376 CGCATACGTGGCTTGATTTGATT 60.487 43.478 11.48 0.00 33.53 2.57
245 599 3.792956 GCATACGTGGCTTGATTTGATTG 59.207 43.478 0.00 0.00 0.00 2.67
246 600 4.353737 CATACGTGGCTTGATTTGATTGG 58.646 43.478 0.00 0.00 0.00 3.16
247 601 2.513753 ACGTGGCTTGATTTGATTGGA 58.486 42.857 0.00 0.00 0.00 3.53
248 602 2.890311 ACGTGGCTTGATTTGATTGGAA 59.110 40.909 0.00 0.00 0.00 3.53
249 603 3.057315 ACGTGGCTTGATTTGATTGGAAG 60.057 43.478 0.00 0.00 0.00 3.46
250 604 3.191162 CGTGGCTTGATTTGATTGGAAGA 59.809 43.478 0.00 0.00 0.00 2.87
251 605 4.321156 CGTGGCTTGATTTGATTGGAAGAA 60.321 41.667 0.00 0.00 0.00 2.52
252 606 5.540911 GTGGCTTGATTTGATTGGAAGAAA 58.459 37.500 0.00 0.00 0.00 2.52
253 607 5.990996 GTGGCTTGATTTGATTGGAAGAAAA 59.009 36.000 0.00 0.00 0.00 2.29
254 608 6.652062 GTGGCTTGATTTGATTGGAAGAAAAT 59.348 34.615 0.00 0.00 0.00 1.82
255 609 7.818930 GTGGCTTGATTTGATTGGAAGAAAATA 59.181 33.333 0.00 0.00 0.00 1.40
256 610 8.373981 TGGCTTGATTTGATTGGAAGAAAATAA 58.626 29.630 0.00 0.00 0.00 1.40
257 611 8.876790 GGCTTGATTTGATTGGAAGAAAATAAG 58.123 33.333 0.00 0.00 0.00 1.73
258 612 8.876790 GCTTGATTTGATTGGAAGAAAATAAGG 58.123 33.333 0.00 0.00 0.00 2.69
259 613 8.776376 TTGATTTGATTGGAAGAAAATAAGGC 57.224 30.769 0.00 0.00 0.00 4.35
260 614 7.330262 TGATTTGATTGGAAGAAAATAAGGCC 58.670 34.615 0.00 0.00 0.00 5.19
261 615 5.675684 TTGATTGGAAGAAAATAAGGCCC 57.324 39.130 0.00 0.00 0.00 5.80
262 616 3.699038 TGATTGGAAGAAAATAAGGCCCG 59.301 43.478 0.00 0.00 0.00 6.13
263 617 2.137810 TGGAAGAAAATAAGGCCCGG 57.862 50.000 0.00 0.00 0.00 5.73
264 618 0.744874 GGAAGAAAATAAGGCCCGGC 59.255 55.000 0.00 0.00 0.00 6.13
279 633 3.922364 GGCCCCACCCCCTGAAAA 61.922 66.667 0.00 0.00 0.00 2.29
280 634 2.449777 GCCCCACCCCCTGAAAAT 59.550 61.111 0.00 0.00 0.00 1.82
281 635 1.685765 GCCCCACCCCCTGAAAATC 60.686 63.158 0.00 0.00 0.00 2.17
282 636 1.780327 CCCCACCCCCTGAAAATCA 59.220 57.895 0.00 0.00 0.00 2.57
283 637 0.324645 CCCCACCCCCTGAAAATCAG 60.325 60.000 0.32 0.32 43.91 2.90
310 664 7.978925 GGGGGAGATGATTAGATTAGAAAAGA 58.021 38.462 0.00 0.00 0.00 2.52
311 665 8.440771 GGGGGAGATGATTAGATTAGAAAAGAA 58.559 37.037 0.00 0.00 0.00 2.52
312 666 9.853177 GGGGAGATGATTAGATTAGAAAAGAAA 57.147 33.333 0.00 0.00 0.00 2.52
348 702 3.669354 CGTAGGATGAAGTGGGAGC 57.331 57.895 0.00 0.00 0.00 4.70
349 703 0.824109 CGTAGGATGAAGTGGGAGCA 59.176 55.000 0.00 0.00 0.00 4.26
350 704 1.471676 CGTAGGATGAAGTGGGAGCAC 60.472 57.143 0.00 0.00 0.00 4.40
351 705 0.824109 TAGGATGAAGTGGGAGCACG 59.176 55.000 0.00 0.00 0.00 5.34
352 706 1.450312 GGATGAAGTGGGAGCACGG 60.450 63.158 0.00 0.00 0.00 4.94
353 707 1.596934 GATGAAGTGGGAGCACGGA 59.403 57.895 0.00 0.00 0.00 4.69
354 708 0.179000 GATGAAGTGGGAGCACGGAT 59.821 55.000 0.00 0.00 0.00 4.18
355 709 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.000 0.00 0.00 0.00 3.51
356 710 1.450312 GAAGTGGGAGCACGGATGG 60.450 63.158 0.00 0.00 0.00 3.51
357 711 2.876368 GAAGTGGGAGCACGGATGGG 62.876 65.000 0.00 0.00 0.00 4.00
358 712 3.399181 GTGGGAGCACGGATGGGA 61.399 66.667 0.00 0.00 0.00 4.37
359 713 3.083349 TGGGAGCACGGATGGGAG 61.083 66.667 0.00 0.00 0.00 4.30
360 714 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
361 715 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
362 716 2.507944 GAGCACGGATGGGAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
363 717 1.890979 GAGCACGGATGGGAGCATG 60.891 63.158 0.00 0.00 0.00 4.06
364 718 2.903855 GCACGGATGGGAGCATGG 60.904 66.667 0.00 0.00 0.00 3.66
365 719 2.910360 CACGGATGGGAGCATGGA 59.090 61.111 0.00 0.00 0.00 3.41
366 720 1.227764 CACGGATGGGAGCATGGAG 60.228 63.158 0.00 0.00 0.00 3.86
367 721 1.383109 ACGGATGGGAGCATGGAGA 60.383 57.895 0.00 0.00 0.00 3.71
368 722 1.370437 CGGATGGGAGCATGGAGAG 59.630 63.158 0.00 0.00 0.00 3.20
369 723 1.759881 GGATGGGAGCATGGAGAGG 59.240 63.158 0.00 0.00 0.00 3.69
370 724 1.759881 GATGGGAGCATGGAGAGGG 59.240 63.158 0.00 0.00 0.00 4.30
371 725 0.765903 GATGGGAGCATGGAGAGGGA 60.766 60.000 0.00 0.00 0.00 4.20
372 726 0.767446 ATGGGAGCATGGAGAGGGAG 60.767 60.000 0.00 0.00 0.00 4.30
373 727 2.817056 GGGAGCATGGAGAGGGAGC 61.817 68.421 0.00 0.00 0.00 4.70
374 728 2.068821 GGAGCATGGAGAGGGAGCA 61.069 63.158 0.00 0.00 0.00 4.26
375 729 1.446791 GAGCATGGAGAGGGAGCAG 59.553 63.158 0.00 0.00 0.00 4.24
376 730 2.042404 GAGCATGGAGAGGGAGCAGG 62.042 65.000 0.00 0.00 0.00 4.85
377 731 2.509916 CATGGAGAGGGAGCAGGC 59.490 66.667 0.00 0.00 0.00 4.85
378 732 2.041762 ATGGAGAGGGAGCAGGCA 59.958 61.111 0.00 0.00 0.00 4.75
379 733 1.617536 ATGGAGAGGGAGCAGGCAA 60.618 57.895 0.00 0.00 0.00 4.52
380 734 1.633915 ATGGAGAGGGAGCAGGCAAG 61.634 60.000 0.00 0.00 0.00 4.01
381 735 2.124778 GAGAGGGAGCAGGCAAGC 60.125 66.667 0.00 0.00 0.00 4.01
382 736 3.695747 GAGAGGGAGCAGGCAAGCC 62.696 68.421 2.02 2.02 34.23 4.35
386 740 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
387 741 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
388 742 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
439 793 2.267642 CATGGAACGGAGGCGGAA 59.732 61.111 0.00 0.00 0.00 4.30
443 797 1.740664 GGAACGGAGGCGGAAGAAC 60.741 63.158 0.00 0.00 0.00 3.01
450 804 0.319641 GAGGCGGAAGAACGTTGAGT 60.320 55.000 5.00 0.00 35.98 3.41
525 1203 0.762418 TGACAGTGAATCGGTTGGGT 59.238 50.000 0.00 0.00 0.00 4.51
526 1204 1.142060 TGACAGTGAATCGGTTGGGTT 59.858 47.619 0.00 0.00 0.00 4.11
527 1205 1.535462 GACAGTGAATCGGTTGGGTTG 59.465 52.381 0.00 0.00 0.00 3.77
528 1206 0.881118 CAGTGAATCGGTTGGGTTGG 59.119 55.000 0.00 0.00 0.00 3.77
529 1207 0.251165 AGTGAATCGGTTGGGTTGGG 60.251 55.000 0.00 0.00 0.00 4.12
530 1208 1.075836 TGAATCGGTTGGGTTGGGG 59.924 57.895 0.00 0.00 0.00 4.96
531 1209 1.076014 GAATCGGTTGGGTTGGGGT 59.924 57.895 0.00 0.00 0.00 4.95
636 1314 4.163427 AGAAAGGAAGGAGATGTGACTGA 58.837 43.478 0.00 0.00 0.00 3.41
679 1357 3.817647 CCCCTTAATAGCAGAGATGTTGC 59.182 47.826 0.00 0.00 41.83 4.17
743 1421 6.135290 TGCCTATTATTGAATGACTTGCAC 57.865 37.500 0.00 0.00 0.00 4.57
985 1680 2.159558 ACTGATCAGTGTAGCGTACGTG 60.160 50.000 27.37 6.04 40.75 4.49
1008 1703 3.762823 GGTGTCCGTCTCCCCTATATAAG 59.237 52.174 0.00 0.00 0.00 1.73
1029 1724 2.107141 CTTCGGGCTTCGGCTAGG 59.893 66.667 0.00 0.00 41.44 3.02
1053 1748 4.460382 CCAATATCAGCCTCACAAACTGTT 59.540 41.667 0.00 0.00 33.12 3.16
1056 1751 2.288666 TCAGCCTCACAAACTGTTCAC 58.711 47.619 0.00 0.00 33.12 3.18
1075 1770 3.452264 TCACCTGATCACCTCCTACAATG 59.548 47.826 0.00 0.00 0.00 2.82
1105 1800 0.108615 AAGAGATGACGTTCGGGCAG 60.109 55.000 0.00 0.00 0.00 4.85
1274 1969 1.338484 TGTCTCTGTTCATGCTCAGGC 60.338 52.381 13.96 7.89 39.26 4.85
1279 1974 3.329889 TTCATGCTCAGGCCCGGT 61.330 61.111 0.00 0.00 37.74 5.28
1345 2055 1.006805 CATCGATCAGCGGACTCCC 60.007 63.158 0.00 0.00 41.33 4.30
1481 2202 0.746659 GTCACCCTGCTGCTGTTTTT 59.253 50.000 0.00 0.00 0.00 1.94
1540 2261 2.023307 TCCTACAAGGAAGGGTAGAGGG 60.023 54.545 0.00 0.00 42.51 4.30
1759 2512 2.438021 CCCAGGAATTCTTCACGGGATA 59.562 50.000 5.23 0.00 42.37 2.59
1760 2513 3.467803 CCAGGAATTCTTCACGGGATAC 58.532 50.000 5.23 0.00 0.00 2.24
1776 2529 5.408356 CGGGATACGTTCTTATATTCTGGG 58.592 45.833 0.00 0.00 37.93 4.45
1777 2530 5.184479 CGGGATACGTTCTTATATTCTGGGA 59.816 44.000 0.00 0.00 37.93 4.37
1778 2531 6.396450 GGGATACGTTCTTATATTCTGGGAC 58.604 44.000 0.00 0.00 37.60 4.46
1779 2532 6.014840 GGGATACGTTCTTATATTCTGGGACA 60.015 42.308 0.00 0.00 37.60 4.02
1857 2937 3.656559 ACTCATTTTGCATTGTGGAAGC 58.343 40.909 0.00 0.00 0.00 3.86
1859 2939 4.202284 ACTCATTTTGCATTGTGGAAGCTT 60.202 37.500 0.00 0.00 0.00 3.74
1861 2941 3.815856 TTTTGCATTGTGGAAGCTTGA 57.184 38.095 2.10 0.00 0.00 3.02
1862 2942 4.339872 TTTTGCATTGTGGAAGCTTGAT 57.660 36.364 2.10 0.00 0.00 2.57
1864 2944 4.707030 TTGCATTGTGGAAGCTTGATAG 57.293 40.909 2.10 0.00 0.00 2.08
1865 2945 3.954200 TGCATTGTGGAAGCTTGATAGA 58.046 40.909 2.10 0.00 0.00 1.98
1866 2946 3.943381 TGCATTGTGGAAGCTTGATAGAG 59.057 43.478 2.10 0.00 0.00 2.43
1869 2949 5.105997 GCATTGTGGAAGCTTGATAGAGTTT 60.106 40.000 2.10 0.00 0.00 2.66
1870 2950 6.094048 GCATTGTGGAAGCTTGATAGAGTTTA 59.906 38.462 2.10 0.00 0.00 2.01
1871 2951 7.678218 GCATTGTGGAAGCTTGATAGAGTTTAG 60.678 40.741 2.10 0.00 0.00 1.85
1872 2952 6.360370 TGTGGAAGCTTGATAGAGTTTAGT 57.640 37.500 2.10 0.00 0.00 2.24
1875 2955 6.651225 GTGGAAGCTTGATAGAGTTTAGTTGT 59.349 38.462 2.10 0.00 0.00 3.32
1876 2956 6.650807 TGGAAGCTTGATAGAGTTTAGTTGTG 59.349 38.462 2.10 0.00 0.00 3.33
1877 2957 6.651225 GGAAGCTTGATAGAGTTTAGTTGTGT 59.349 38.462 2.10 0.00 0.00 3.72
1880 3683 7.217200 AGCTTGATAGAGTTTAGTTGTGTCAA 58.783 34.615 0.00 0.00 0.00 3.18
1881 3684 7.880195 AGCTTGATAGAGTTTAGTTGTGTCAAT 59.120 33.333 0.00 0.00 0.00 2.57
1924 4169 9.959721 ATACATGAGTTTTGGTGTACTCTAAAT 57.040 29.630 0.00 0.00 41.05 1.40
2006 4252 4.153117 CCGCCAGCTTCATAATTATCTCAC 59.847 45.833 0.00 0.00 0.00 3.51
2010 4256 4.153117 CAGCTTCATAATTATCTCACGGGC 59.847 45.833 0.00 0.00 0.00 6.13
2189 4466 7.308435 AGCTGTATTTTATCACAAGTTTCAGC 58.692 34.615 0.00 0.00 42.07 4.26
2479 4904 1.014352 GGAACAAGCACACGACAAGT 58.986 50.000 0.00 0.00 0.00 3.16
2583 5014 1.668294 CTGCAGGTCTGTCGTCCTT 59.332 57.895 5.57 0.00 30.91 3.36
2622 5059 3.064987 TAAGAGCGAGCCCGAGTGC 62.065 63.158 0.00 0.00 38.22 4.40
2653 5090 2.809601 CGTACGCCGAGCTTGCTT 60.810 61.111 0.52 1.21 39.56 3.91
2655 5092 2.434185 TACGCCGAGCTTGCTTGG 60.434 61.111 21.41 21.41 0.00 3.61
2876 5334 2.038837 CCGCCGTTTTCTCCCTTCC 61.039 63.158 0.00 0.00 0.00 3.46
3052 5599 1.535028 TGACGAACATCAACATGTGGC 59.465 47.619 0.00 0.00 42.89 5.01
3055 5602 0.171007 GAACATCAACATGTGGCGGG 59.829 55.000 0.00 0.00 42.89 6.13
3066 5639 4.274147 ACATGTGGCGGGTTATATTTCAA 58.726 39.130 0.00 0.00 0.00 2.69
3120 5711 5.808366 TCTTGAGGGGCTTGTATGTATAG 57.192 43.478 0.00 0.00 0.00 1.31
3121 5712 5.216622 TCTTGAGGGGCTTGTATGTATAGT 58.783 41.667 0.00 0.00 0.00 2.12
3124 5715 4.966168 TGAGGGGCTTGTATGTATAGTTGA 59.034 41.667 0.00 0.00 0.00 3.18
3201 5802 7.047891 TGATTCTAGGAGCGTGAATTATGTTT 58.952 34.615 0.00 0.00 31.49 2.83
3254 5855 5.466127 TTGGGCTCAGTATCCCTAAAAAT 57.534 39.130 0.00 0.00 43.04 1.82
3287 5888 8.925161 TTGAAATTTGAAACTTTGTCTACCAG 57.075 30.769 0.00 0.00 0.00 4.00
3313 5914 5.581350 AATGGTTGACAATGGGGAAAAAT 57.419 34.783 0.00 0.00 0.00 1.82
3388 5989 4.678840 GCTCAAATGCTCCCCAATAAACAG 60.679 45.833 0.00 0.00 0.00 3.16
3391 5992 6.013379 TCAAATGCTCCCCAATAAACAGTAA 58.987 36.000 0.00 0.00 0.00 2.24
3399 6000 7.545615 GCTCCCCAATAAACAGTAAAATCAAAG 59.454 37.037 0.00 0.00 0.00 2.77
3573 6175 8.907222 ATGCTCCAAAAATAAGTTTGTCAAAT 57.093 26.923 0.40 0.00 36.87 2.32
3610 6212 2.876550 ACTTTCGGTCCAAAACTAGCAC 59.123 45.455 0.00 0.00 0.00 4.40
3642 6245 1.481871 AAGCCCATGCAATCAAGAGG 58.518 50.000 0.00 0.00 41.13 3.69
3720 6328 4.360951 TTTTTCTCCTACCGGACACATT 57.639 40.909 9.46 0.00 34.92 2.71
3723 6331 5.486735 TTTCTCCTACCGGACACATTAAA 57.513 39.130 9.46 0.00 34.92 1.52
3724 6332 5.687166 TTCTCCTACCGGACACATTAAAT 57.313 39.130 9.46 0.00 34.92 1.40
3725 6333 5.018539 TCTCCTACCGGACACATTAAATG 57.981 43.478 9.46 0.00 34.92 2.32
3726 6334 4.712829 TCTCCTACCGGACACATTAAATGA 59.287 41.667 9.46 0.00 34.92 2.57
3727 6335 5.188163 TCTCCTACCGGACACATTAAATGAA 59.812 40.000 9.46 0.00 34.92 2.57
3745 6353 9.681692 TTAAATGAATCATTGACTTTGTCACAG 57.318 29.630 9.47 0.00 42.60 3.66
3775 6383 0.328258 ACAGAAAACAGGGGATCGGG 59.672 55.000 0.00 0.00 0.00 5.14
3836 6447 4.033709 AGTGTGCTACTCCATCTACCATT 58.966 43.478 0.00 0.00 33.17 3.16
3858 6469 9.681062 CCATTAGTTATTCCCATATACGGAATT 57.319 33.333 17.11 6.38 45.89 2.17
3862 6473 7.321153 AGTTATTCCCATATACGGAATTCTCG 58.679 38.462 17.11 9.79 45.89 4.04
3863 6474 3.587797 TCCCATATACGGAATTCTCGC 57.412 47.619 13.91 0.00 0.00 5.03
3864 6475 2.894765 TCCCATATACGGAATTCTCGCA 59.105 45.455 13.91 4.48 0.00 5.10
3865 6476 3.322541 TCCCATATACGGAATTCTCGCAA 59.677 43.478 13.91 5.67 0.00 4.85
3867 6478 4.513692 CCCATATACGGAATTCTCGCAAAA 59.486 41.667 13.91 1.80 0.00 2.44
3868 6479 5.008217 CCCATATACGGAATTCTCGCAAAAA 59.992 40.000 13.91 0.44 0.00 1.94
3899 6510 9.938670 CTCATATACGGAATGTATACTTCTAGC 57.061 37.037 4.17 0.00 46.15 3.42
3900 6511 9.457436 TCATATACGGAATGTATACTTCTAGCA 57.543 33.333 4.17 0.00 46.15 3.49
3905 6516 8.179509 ACGGAATGTATACTTCTAGCAATACT 57.820 34.615 4.17 0.00 0.00 2.12
3906 6517 9.293404 ACGGAATGTATACTTCTAGCAATACTA 57.707 33.333 4.17 0.00 0.00 1.82
3916 6527 7.146648 ACTTCTAGCAATACTAATAAGGACGC 58.853 38.462 0.00 0.00 32.13 5.19
3917 6528 5.696822 TCTAGCAATACTAATAAGGACGCG 58.303 41.667 3.53 3.53 0.00 6.01
3918 6529 4.317671 AGCAATACTAATAAGGACGCGT 57.682 40.909 13.85 13.85 0.00 6.01
3951 6562 1.221635 TGGTTGGTGAGATATGGGGG 58.778 55.000 0.00 0.00 0.00 5.40
3965 6576 2.665603 GGGGGCATATCCGAGAGC 59.334 66.667 0.00 0.00 34.94 4.09
3966 6577 2.262915 GGGGCATATCCGAGAGCG 59.737 66.667 0.00 0.00 34.94 5.03
3976 6587 4.554363 CGAGAGCGGCGATTCGGT 62.554 66.667 12.98 0.00 43.85 4.69
3977 6588 2.956964 GAGAGCGGCGATTCGGTG 60.957 66.667 12.98 0.00 41.12 4.94
3978 6589 4.514577 AGAGCGGCGATTCGGTGG 62.515 66.667 12.98 0.00 41.12 4.61
3979 6590 4.508128 GAGCGGCGATTCGGTGGA 62.508 66.667 12.98 0.00 41.12 4.02
3980 6591 4.814294 AGCGGCGATTCGGTGGAC 62.814 66.667 12.98 0.00 39.50 4.02
3991 6602 2.811317 GGTGGACGAGCTCGCTTG 60.811 66.667 34.83 10.53 44.43 4.01
3992 6603 3.482783 GTGGACGAGCTCGCTTGC 61.483 66.667 34.83 22.17 44.43 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.523293 TTGGTAAGTGTTGATTCAATCACAT 57.477 32.000 22.50 17.19 39.39 3.21
3 4 8.702438 CAATTTGGTAAGTGTTGATTCAATCAC 58.298 33.333 17.22 17.22 39.39 3.06
4 5 7.871973 CCAATTTGGTAAGTGTTGATTCAATCA 59.128 33.333 7.31 0.00 32.87 2.57
6 7 7.160726 CCCAATTTGGTAAGTGTTGATTCAAT 58.839 34.615 14.26 0.00 35.17 2.57
7 8 6.098982 ACCCAATTTGGTAAGTGTTGATTCAA 59.901 34.615 14.26 0.00 36.67 2.69
8 9 5.600484 ACCCAATTTGGTAAGTGTTGATTCA 59.400 36.000 14.26 0.00 36.67 2.57
9 10 5.925969 CACCCAATTTGGTAAGTGTTGATTC 59.074 40.000 14.26 0.00 36.67 2.52
11 12 4.283212 CCACCCAATTTGGTAAGTGTTGAT 59.717 41.667 14.26 0.00 36.67 2.57
12 13 3.639094 CCACCCAATTTGGTAAGTGTTGA 59.361 43.478 14.26 0.00 36.67 3.18
13 14 3.244044 CCCACCCAATTTGGTAAGTGTTG 60.244 47.826 14.26 5.52 36.67 3.33
25 376 2.603171 CCGCAACCCCACCCAATT 60.603 61.111 0.00 0.00 0.00 2.32
44 395 6.238211 CCACGATGCTCTATTTCCTTTTACTG 60.238 42.308 0.00 0.00 0.00 2.74
133 486 6.793505 TCTCCCCTCTATTTTCTGTTACTC 57.206 41.667 0.00 0.00 0.00 2.59
152 506 2.022129 CGGCACACACGTCTTCTCC 61.022 63.158 0.00 0.00 0.00 3.71
160 514 2.052590 CGAAAACCGGCACACACG 60.053 61.111 0.00 0.00 33.91 4.49
177 531 1.446966 GAGCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 0.00 4.79
178 532 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
179 533 2.659610 GGAGCAGGCAAGTCTCGT 59.340 61.111 0.00 0.00 0.00 4.18
180 534 2.125350 GGGAGCAGGCAAGTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
181 535 0.392327 GAAGGGAGCAGGCAAGTCTC 60.392 60.000 0.00 0.00 0.00 3.36
182 536 0.839853 AGAAGGGAGCAGGCAAGTCT 60.840 55.000 0.00 0.00 0.00 3.24
183 537 0.392327 GAGAAGGGAGCAGGCAAGTC 60.392 60.000 0.00 0.00 0.00 3.01
184 538 1.130054 TGAGAAGGGAGCAGGCAAGT 61.130 55.000 0.00 0.00 0.00 3.16
185 539 0.255318 ATGAGAAGGGAGCAGGCAAG 59.745 55.000 0.00 0.00 0.00 4.01
186 540 0.034767 CATGAGAAGGGAGCAGGCAA 60.035 55.000 0.00 0.00 0.00 4.52
187 541 1.605992 CATGAGAAGGGAGCAGGCA 59.394 57.895 0.00 0.00 0.00 4.75
188 542 1.823041 GCATGAGAAGGGAGCAGGC 60.823 63.158 0.00 0.00 32.07 4.85
189 543 0.179051 GAGCATGAGAAGGGAGCAGG 60.179 60.000 0.00 0.00 0.00 4.85
190 544 0.179051 GGAGCATGAGAAGGGAGCAG 60.179 60.000 0.00 0.00 0.00 4.24
191 545 1.630126 GGGAGCATGAGAAGGGAGCA 61.630 60.000 0.00 0.00 0.00 4.26
192 546 1.148048 GGGAGCATGAGAAGGGAGC 59.852 63.158 0.00 0.00 0.00 4.70
193 547 1.072015 GATGGGAGCATGAGAAGGGAG 59.928 57.143 0.00 0.00 0.00 4.30
194 548 1.135094 GATGGGAGCATGAGAAGGGA 58.865 55.000 0.00 0.00 0.00 4.20
195 549 0.110104 GGATGGGAGCATGAGAAGGG 59.890 60.000 0.00 0.00 0.00 3.95
196 550 0.250209 CGGATGGGAGCATGAGAAGG 60.250 60.000 0.00 0.00 0.00 3.46
197 551 0.467384 ACGGATGGGAGCATGAGAAG 59.533 55.000 0.00 0.00 0.00 2.85
198 552 0.178767 CACGGATGGGAGCATGAGAA 59.821 55.000 0.00 0.00 0.00 2.87
199 553 1.825341 CACGGATGGGAGCATGAGA 59.175 57.895 0.00 0.00 0.00 3.27
200 554 1.890979 GCACGGATGGGAGCATGAG 60.891 63.158 0.00 0.00 0.00 2.90
201 555 2.190313 GCACGGATGGGAGCATGA 59.810 61.111 0.00 0.00 0.00 3.07
202 556 1.890979 GAGCACGGATGGGAGCATG 60.891 63.158 0.00 0.00 0.00 4.06
203 557 2.507944 GAGCACGGATGGGAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
204 558 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
205 559 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
206 560 4.227134 CGGGAGCACGGATGGGAG 62.227 72.222 0.00 0.00 0.00 4.30
218 572 2.173669 CAAGCCACGTATGCGGGAG 61.174 63.158 7.15 0.00 45.97 4.30
219 573 1.966901 ATCAAGCCACGTATGCGGGA 61.967 55.000 7.15 6.11 45.97 5.14
220 574 1.095228 AATCAAGCCACGTATGCGGG 61.095 55.000 8.39 2.48 43.45 6.13
221 575 0.732571 AAATCAAGCCACGTATGCGG 59.267 50.000 8.39 0.00 43.45 5.69
222 576 1.396648 TCAAATCAAGCCACGTATGCG 59.603 47.619 0.19 0.19 44.93 4.73
223 577 3.698029 ATCAAATCAAGCCACGTATGC 57.302 42.857 1.17 1.17 0.00 3.14
224 578 4.096231 TCCAATCAAATCAAGCCACGTATG 59.904 41.667 0.00 0.00 0.00 2.39
225 579 4.269183 TCCAATCAAATCAAGCCACGTAT 58.731 39.130 0.00 0.00 0.00 3.06
226 580 3.680490 TCCAATCAAATCAAGCCACGTA 58.320 40.909 0.00 0.00 0.00 3.57
227 581 2.513753 TCCAATCAAATCAAGCCACGT 58.486 42.857 0.00 0.00 0.00 4.49
228 582 3.191162 TCTTCCAATCAAATCAAGCCACG 59.809 43.478 0.00 0.00 0.00 4.94
229 583 4.789012 TCTTCCAATCAAATCAAGCCAC 57.211 40.909 0.00 0.00 0.00 5.01
230 584 5.804944 TTTCTTCCAATCAAATCAAGCCA 57.195 34.783 0.00 0.00 0.00 4.75
231 585 8.776376 TTATTTTCTTCCAATCAAATCAAGCC 57.224 30.769 0.00 0.00 0.00 4.35
232 586 8.876790 CCTTATTTTCTTCCAATCAAATCAAGC 58.123 33.333 0.00 0.00 0.00 4.01
233 587 8.876790 GCCTTATTTTCTTCCAATCAAATCAAG 58.123 33.333 0.00 0.00 0.00 3.02
234 588 7.823799 GGCCTTATTTTCTTCCAATCAAATCAA 59.176 33.333 0.00 0.00 0.00 2.57
235 589 7.330262 GGCCTTATTTTCTTCCAATCAAATCA 58.670 34.615 0.00 0.00 0.00 2.57
236 590 6.763135 GGGCCTTATTTTCTTCCAATCAAATC 59.237 38.462 0.84 0.00 0.00 2.17
237 591 6.630188 CGGGCCTTATTTTCTTCCAATCAAAT 60.630 38.462 0.84 0.00 0.00 2.32
238 592 5.337169 CGGGCCTTATTTTCTTCCAATCAAA 60.337 40.000 0.84 0.00 0.00 2.69
239 593 4.159506 CGGGCCTTATTTTCTTCCAATCAA 59.840 41.667 0.84 0.00 0.00 2.57
240 594 3.699038 CGGGCCTTATTTTCTTCCAATCA 59.301 43.478 0.84 0.00 0.00 2.57
241 595 3.068165 CCGGGCCTTATTTTCTTCCAATC 59.932 47.826 0.84 0.00 0.00 2.67
242 596 3.031013 CCGGGCCTTATTTTCTTCCAAT 58.969 45.455 0.84 0.00 0.00 3.16
243 597 2.452505 CCGGGCCTTATTTTCTTCCAA 58.547 47.619 0.84 0.00 0.00 3.53
244 598 1.958069 GCCGGGCCTTATTTTCTTCCA 60.958 52.381 8.12 0.00 0.00 3.53
245 599 0.744874 GCCGGGCCTTATTTTCTTCC 59.255 55.000 8.12 0.00 0.00 3.46
246 600 0.744874 GGCCGGGCCTTATTTTCTTC 59.255 55.000 30.86 0.00 46.69 2.87
247 601 2.896278 GGCCGGGCCTTATTTTCTT 58.104 52.632 30.86 0.00 46.69 2.52
248 602 4.678423 GGCCGGGCCTTATTTTCT 57.322 55.556 30.86 0.00 46.69 2.52
262 616 3.252585 ATTTTCAGGGGGTGGGGCC 62.253 63.158 0.00 0.00 0.00 5.80
263 617 1.685765 GATTTTCAGGGGGTGGGGC 60.686 63.158 0.00 0.00 0.00 5.80
264 618 0.324645 CTGATTTTCAGGGGGTGGGG 60.325 60.000 0.00 0.00 40.71 4.96
265 619 3.288099 CTGATTTTCAGGGGGTGGG 57.712 57.895 0.00 0.00 40.71 4.61
285 639 7.978925 TCTTTTCTAATCTAATCATCTCCCCC 58.021 38.462 0.00 0.00 0.00 5.40
286 640 9.853177 TTTCTTTTCTAATCTAATCATCTCCCC 57.147 33.333 0.00 0.00 0.00 4.81
318 672 4.015872 TCATCCTACGGCTGTTCTTTTT 57.984 40.909 1.99 0.00 0.00 1.94
319 673 3.695830 TCATCCTACGGCTGTTCTTTT 57.304 42.857 1.99 0.00 0.00 2.27
320 674 3.008049 ACTTCATCCTACGGCTGTTCTTT 59.992 43.478 1.99 0.00 0.00 2.52
321 675 2.567615 ACTTCATCCTACGGCTGTTCTT 59.432 45.455 1.99 0.00 0.00 2.52
322 676 2.093973 CACTTCATCCTACGGCTGTTCT 60.094 50.000 1.99 0.00 0.00 3.01
323 677 2.271800 CACTTCATCCTACGGCTGTTC 58.728 52.381 1.99 0.00 0.00 3.18
324 678 1.066143 CCACTTCATCCTACGGCTGTT 60.066 52.381 1.99 0.00 0.00 3.16
325 679 0.537188 CCACTTCATCCTACGGCTGT 59.463 55.000 2.42 2.42 0.00 4.40
326 680 0.179073 CCCACTTCATCCTACGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
327 681 0.325296 TCCCACTTCATCCTACGGCT 60.325 55.000 0.00 0.00 0.00 5.52
328 682 0.105039 CTCCCACTTCATCCTACGGC 59.895 60.000 0.00 0.00 0.00 5.68
329 683 0.105039 GCTCCCACTTCATCCTACGG 59.895 60.000 0.00 0.00 0.00 4.02
330 684 0.824109 TGCTCCCACTTCATCCTACG 59.176 55.000 0.00 0.00 0.00 3.51
331 685 1.471676 CGTGCTCCCACTTCATCCTAC 60.472 57.143 0.00 0.00 39.86 3.18
332 686 0.824109 CGTGCTCCCACTTCATCCTA 59.176 55.000 0.00 0.00 39.86 2.94
333 687 1.599047 CGTGCTCCCACTTCATCCT 59.401 57.895 0.00 0.00 39.86 3.24
334 688 1.450312 CCGTGCTCCCACTTCATCC 60.450 63.158 0.00 0.00 39.86 3.51
335 689 0.179000 ATCCGTGCTCCCACTTCATC 59.821 55.000 0.00 0.00 39.86 2.92
336 690 0.107508 CATCCGTGCTCCCACTTCAT 60.108 55.000 0.00 0.00 39.86 2.57
337 691 1.296392 CATCCGTGCTCCCACTTCA 59.704 57.895 0.00 0.00 39.86 3.02
338 692 1.450312 CCATCCGTGCTCCCACTTC 60.450 63.158 0.00 0.00 39.86 3.01
339 693 2.671070 CCATCCGTGCTCCCACTT 59.329 61.111 0.00 0.00 39.86 3.16
340 694 3.402681 CCCATCCGTGCTCCCACT 61.403 66.667 0.00 0.00 39.86 4.00
341 695 3.391665 CTCCCATCCGTGCTCCCAC 62.392 68.421 0.00 0.00 38.62 4.61
342 696 3.083349 CTCCCATCCGTGCTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
343 697 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
344 698 3.112205 ATGCTCCCATCCGTGCTCC 62.112 63.158 0.00 0.00 0.00 4.70
345 699 1.890979 CATGCTCCCATCCGTGCTC 60.891 63.158 0.00 0.00 0.00 4.26
346 700 2.191375 CATGCTCCCATCCGTGCT 59.809 61.111 0.00 0.00 0.00 4.40
347 701 2.903855 CCATGCTCCCATCCGTGC 60.904 66.667 0.00 0.00 0.00 5.34
348 702 1.227764 CTCCATGCTCCCATCCGTG 60.228 63.158 0.00 0.00 0.00 4.94
349 703 1.383109 TCTCCATGCTCCCATCCGT 60.383 57.895 0.00 0.00 0.00 4.69
350 704 1.370437 CTCTCCATGCTCCCATCCG 59.630 63.158 0.00 0.00 0.00 4.18
351 705 1.759881 CCTCTCCATGCTCCCATCC 59.240 63.158 0.00 0.00 0.00 3.51
352 706 0.765903 TCCCTCTCCATGCTCCCATC 60.766 60.000 0.00 0.00 0.00 3.51
353 707 0.767446 CTCCCTCTCCATGCTCCCAT 60.767 60.000 0.00 0.00 0.00 4.00
354 708 1.383664 CTCCCTCTCCATGCTCCCA 60.384 63.158 0.00 0.00 0.00 4.37
355 709 2.817056 GCTCCCTCTCCATGCTCCC 61.817 68.421 0.00 0.00 0.00 4.30
356 710 2.042404 CTGCTCCCTCTCCATGCTCC 62.042 65.000 0.00 0.00 0.00 4.70
357 711 1.446791 CTGCTCCCTCTCCATGCTC 59.553 63.158 0.00 0.00 0.00 4.26
358 712 2.071262 CCTGCTCCCTCTCCATGCT 61.071 63.158 0.00 0.00 0.00 3.79
359 713 2.509916 CCTGCTCCCTCTCCATGC 59.490 66.667 0.00 0.00 0.00 4.06
360 714 1.918467 TTGCCTGCTCCCTCTCCATG 61.918 60.000 0.00 0.00 0.00 3.66
361 715 1.617536 TTGCCTGCTCCCTCTCCAT 60.618 57.895 0.00 0.00 0.00 3.41
362 716 2.203983 TTGCCTGCTCCCTCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
363 717 2.588989 CTTGCCTGCTCCCTCTCC 59.411 66.667 0.00 0.00 0.00 3.71
364 718 2.124778 GCTTGCCTGCTCCCTCTC 60.125 66.667 0.00 0.00 0.00 3.20
365 719 3.726144 GGCTTGCCTGCTCCCTCT 61.726 66.667 4.11 0.00 0.00 3.69
369 723 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
370 724 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
371 725 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
373 727 4.883354 GGGGATCCGGCTTGCCTG 62.883 72.222 5.45 3.29 0.00 4.85
383 737 0.679960 CACAGGAAAACCGGGGATCC 60.680 60.000 6.32 10.12 0.00 3.36
384 738 0.679960 CCACAGGAAAACCGGGGATC 60.680 60.000 6.32 0.00 0.00 3.36
385 739 1.382629 CCACAGGAAAACCGGGGAT 59.617 57.895 6.32 0.00 0.00 3.85
386 740 1.647334 AACCACAGGAAAACCGGGGA 61.647 55.000 6.32 0.00 0.00 4.81
387 741 0.757561 AAACCACAGGAAAACCGGGG 60.758 55.000 6.32 0.00 0.00 5.73
388 742 1.067974 GAAAACCACAGGAAAACCGGG 59.932 52.381 6.32 0.00 0.00 5.73
439 793 3.485463 TCCCATTTCACTCAACGTTCT 57.515 42.857 0.00 0.00 0.00 3.01
443 797 1.871039 ACGTTCCCATTTCACTCAACG 59.129 47.619 0.00 0.00 41.76 4.10
450 804 6.642707 AAAAGACATAACGTTCCCATTTCA 57.357 33.333 2.82 0.00 0.00 2.69
509 1187 0.881118 CCAACCCAACCGATTCACTG 59.119 55.000 0.00 0.00 0.00 3.66
525 1203 0.482446 AATGTCTCCAGCAACCCCAA 59.518 50.000 0.00 0.00 0.00 4.12
526 1204 0.482446 AAATGTCTCCAGCAACCCCA 59.518 50.000 0.00 0.00 0.00 4.96
527 1205 1.632589 AAAATGTCTCCAGCAACCCC 58.367 50.000 0.00 0.00 0.00 4.95
528 1206 2.893489 AGAAAAATGTCTCCAGCAACCC 59.107 45.455 0.00 0.00 0.00 4.11
529 1207 3.569701 TCAGAAAAATGTCTCCAGCAACC 59.430 43.478 0.00 0.00 0.00 3.77
530 1208 4.836125 TCAGAAAAATGTCTCCAGCAAC 57.164 40.909 0.00 0.00 0.00 4.17
531 1209 5.279106 CCAATCAGAAAAATGTCTCCAGCAA 60.279 40.000 0.00 0.00 0.00 3.91
633 1311 5.410067 ACAATTTGGTAAATGCCGATTCAG 58.590 37.500 0.78 0.00 0.00 3.02
636 1314 4.382577 GGGACAATTTGGTAAATGCCGATT 60.383 41.667 0.78 0.00 0.00 3.34
679 1357 6.053005 TGTAGACTTTTGTTTCCCTACTGTG 58.947 40.000 0.00 0.00 31.35 3.66
743 1421 2.066262 ACGCCACGAAAACTCACATAG 58.934 47.619 0.00 0.00 0.00 2.23
913 1594 1.931841 CTCTGTGATTGCCAGTCATCG 59.068 52.381 0.00 0.00 0.00 3.84
954 1647 0.901124 ACTGATCAGTCACTGAGGGC 59.099 55.000 22.89 5.94 44.08 5.19
985 1680 0.186873 TATAGGGGAGACGGACACCC 59.813 60.000 4.52 4.52 46.50 4.61
1029 1724 3.019564 AGTTTGTGAGGCTGATATTGGC 58.980 45.455 0.00 0.00 0.00 4.52
1039 1734 1.334869 CAGGTGAACAGTTTGTGAGGC 59.665 52.381 0.00 0.00 0.00 4.70
1053 1748 2.919772 TGTAGGAGGTGATCAGGTGA 57.080 50.000 0.00 0.00 0.00 4.02
1056 1751 2.486191 GGCATTGTAGGAGGTGATCAGG 60.486 54.545 0.00 0.00 0.00 3.86
1075 1770 2.158449 CGTCATCTCTTCAAACTGTGGC 59.842 50.000 0.00 0.00 0.00 5.01
1240 1935 0.320374 GAGACACCATGAACACCCGA 59.680 55.000 0.00 0.00 0.00 5.14
1274 1969 0.537188 ATTCTGCTACTGTCACCGGG 59.463 55.000 6.32 0.00 0.00 5.73
1279 1974 0.108186 CCGCCATTCTGCTACTGTCA 60.108 55.000 0.00 0.00 0.00 3.58
1345 2055 8.993121 GTGTACCAGATAGGAATATCATTTGTG 58.007 37.037 0.00 0.00 41.22 3.33
1481 2202 3.695556 CCACTGTATTGTTCCATGCATGA 59.304 43.478 28.31 11.26 0.00 3.07
1553 2274 1.808133 CGAGGCTGTAATCTCCTTGCC 60.808 57.143 0.00 0.00 40.54 4.52
1671 2424 1.134401 AGATGGCACCACGTAAGATGG 60.134 52.381 0.00 0.00 43.43 3.51
1672 2425 2.159043 AGAGATGGCACCACGTAAGATG 60.159 50.000 0.00 0.00 43.62 2.90
1715 2468 5.280368 GGTCCACTCATCATCATCCATATGT 60.280 44.000 1.24 0.00 34.50 2.29
1759 2512 5.069251 CCTCTGTCCCAGAATATAAGAACGT 59.931 44.000 0.00 0.00 40.18 3.99
1760 2513 5.509840 CCCTCTGTCCCAGAATATAAGAACG 60.510 48.000 0.00 0.00 40.18 3.95
1762 2515 5.788430 TCCCTCTGTCCCAGAATATAAGAA 58.212 41.667 0.00 0.00 40.18 2.52
1763 2516 5.103043 ACTCCCTCTGTCCCAGAATATAAGA 60.103 44.000 0.00 0.00 40.18 2.10
1765 2518 5.157770 ACTCCCTCTGTCCCAGAATATAA 57.842 43.478 0.00 0.00 40.18 0.98
1766 2519 4.834406 ACTCCCTCTGTCCCAGAATATA 57.166 45.455 0.00 0.00 40.18 0.86
1769 2522 2.316372 ACTACTCCCTCTGTCCCAGAAT 59.684 50.000 0.00 0.00 40.18 2.40
1770 2523 1.717077 ACTACTCCCTCTGTCCCAGAA 59.283 52.381 0.00 0.00 40.18 3.02
1771 2524 1.383963 ACTACTCCCTCTGTCCCAGA 58.616 55.000 0.00 0.00 38.25 3.86
1772 2525 3.383698 TTACTACTCCCTCTGTCCCAG 57.616 52.381 0.00 0.00 0.00 4.45
1774 2527 5.703310 TCTATTTACTACTCCCTCTGTCCC 58.297 45.833 0.00 0.00 0.00 4.46
1775 2528 8.937207 TTATCTATTTACTACTCCCTCTGTCC 57.063 38.462 0.00 0.00 0.00 4.02
1839 2918 4.059511 TCAAGCTTCCACAATGCAAAATG 58.940 39.130 0.00 0.00 0.00 2.32
1899 3703 9.787435 AATTTAGAGTACACCAAAACTCATGTA 57.213 29.630 5.38 0.00 43.74 2.29
1905 3709 7.599245 CGAGAGAATTTAGAGTACACCAAAACT 59.401 37.037 0.00 0.00 0.00 2.66
1907 3711 7.663827 TCGAGAGAATTTAGAGTACACCAAAA 58.336 34.615 0.00 0.00 37.03 2.44
1908 3712 7.176165 TCTCGAGAGAATTTAGAGTACACCAAA 59.824 37.037 12.08 0.00 41.32 3.28
1909 3713 6.657966 TCTCGAGAGAATTTAGAGTACACCAA 59.342 38.462 12.08 0.00 41.32 3.67
1910 3714 6.178324 TCTCGAGAGAATTTAGAGTACACCA 58.822 40.000 12.08 0.00 41.32 4.17
1924 4169 6.025749 TGAGCTTTTATGTTCTCGAGAGAA 57.974 37.500 15.94 11.14 44.47 2.87
1943 4189 5.533482 AGTTGTCGATATATGGAGTTGAGC 58.467 41.667 0.00 0.00 0.00 4.26
2006 4252 2.238942 TGTAGATGTAGCATTGCCCG 57.761 50.000 4.70 0.00 0.00 6.13
2010 4256 8.268850 AGTAACCTTTTGTAGATGTAGCATTG 57.731 34.615 0.00 0.00 0.00 2.82
2189 4466 1.542492 AGACAAAGGGCATGCTCAAG 58.458 50.000 22.09 11.36 0.00 3.02
2192 4469 0.449388 CGAAGACAAAGGGCATGCTC 59.551 55.000 18.92 15.06 0.00 4.26
2286 4711 3.982372 TAGTAGCACCTGCACGCGC 62.982 63.158 5.73 0.00 45.16 6.86
2479 4904 0.033504 GAGGATCGAAATGGCCGCTA 59.966 55.000 0.00 0.00 0.00 4.26
2810 5268 2.423446 CATAGCCTCCGTGCTCCC 59.577 66.667 0.00 0.00 41.68 4.30
2821 5279 0.531974 TTTCGTCCATCGCCATAGCC 60.532 55.000 0.00 0.00 39.67 3.93
2862 5320 2.038837 GCCGGGAAGGGAGAAAACG 61.039 63.158 2.18 0.00 41.48 3.60
3215 5816 8.885494 TGAGCCCAATTTATAAATAACAATGC 57.115 30.769 11.07 8.47 0.00 3.56
3287 5888 5.930837 TTCCCCATTGTCAACCATTAATC 57.069 39.130 0.00 0.00 0.00 1.75
3291 5892 5.581350 ATTTTTCCCCATTGTCAACCATT 57.419 34.783 0.00 0.00 0.00 3.16
3304 5905 2.874086 CGGTGTACGGATATTTTTCCCC 59.126 50.000 0.00 0.00 39.42 4.81
3313 5914 0.255604 TCCCACTCGGTGTACGGATA 59.744 55.000 3.82 0.00 44.45 2.59
3460 6061 7.695618 GCTTTCATGTTACATTTTTGCAAACAA 59.304 29.630 12.39 9.98 34.08 2.83
3573 6175 2.930826 AAGTCCTCTTCCGCTCAAAA 57.069 45.000 0.00 0.00 0.00 2.44
3610 6212 6.395426 TGCATGGGCTTAATTTCATTCTAG 57.605 37.500 0.00 0.00 41.91 2.43
3720 6328 9.065798 TCTGTGACAAAGTCAATGATTCATTTA 57.934 29.630 9.19 0.00 44.49 1.40
3723 6331 7.230108 ACTTCTGTGACAAAGTCAATGATTCAT 59.770 33.333 0.82 0.00 44.49 2.57
3724 6332 6.543465 ACTTCTGTGACAAAGTCAATGATTCA 59.457 34.615 0.82 0.00 44.49 2.57
3725 6333 6.963796 ACTTCTGTGACAAAGTCAATGATTC 58.036 36.000 0.82 0.00 44.49 2.52
3726 6334 6.949352 ACTTCTGTGACAAAGTCAATGATT 57.051 33.333 0.82 0.00 44.49 2.57
3727 6335 6.949352 AACTTCTGTGACAAAGTCAATGAT 57.051 33.333 11.54 0.00 44.49 2.45
3745 6353 8.173542 TCCCCTGTTTTCTGTATTTTAACTTC 57.826 34.615 0.00 0.00 0.00 3.01
3756 6364 0.328258 CCCGATCCCCTGTTTTCTGT 59.672 55.000 0.00 0.00 0.00 3.41
3775 6383 9.651718 CTGACATAGAAACTTGTGAACTTTAAC 57.348 33.333 0.00 0.00 0.00 2.01
3873 6484 9.938670 GCTAGAAGTATACATTCCGTATATGAG 57.061 37.037 5.50 0.00 43.37 2.90
3874 6485 9.457436 TGCTAGAAGTATACATTCCGTATATGA 57.543 33.333 5.50 0.00 43.37 2.15
3879 6490 9.293404 AGTATTGCTAGAAGTATACATTCCGTA 57.707 33.333 5.50 0.00 0.00 4.02
3880 6491 8.179509 AGTATTGCTAGAAGTATACATTCCGT 57.820 34.615 5.50 0.00 0.00 4.69
3890 6501 8.295288 GCGTCCTTATTAGTATTGCTAGAAGTA 58.705 37.037 0.00 0.00 0.00 2.24
3891 6502 7.146648 GCGTCCTTATTAGTATTGCTAGAAGT 58.853 38.462 0.00 0.00 0.00 3.01
3892 6503 6.305877 CGCGTCCTTATTAGTATTGCTAGAAG 59.694 42.308 0.00 1.10 0.00 2.85
3893 6504 6.147581 CGCGTCCTTATTAGTATTGCTAGAA 58.852 40.000 0.00 0.00 0.00 2.10
3894 6505 5.240183 ACGCGTCCTTATTAGTATTGCTAGA 59.760 40.000 5.58 0.00 0.00 2.43
3895 6506 5.458891 ACGCGTCCTTATTAGTATTGCTAG 58.541 41.667 5.58 0.00 0.00 3.42
3896 6507 5.443185 ACGCGTCCTTATTAGTATTGCTA 57.557 39.130 5.58 0.00 0.00 3.49
3897 6508 4.317671 ACGCGTCCTTATTAGTATTGCT 57.682 40.909 5.58 0.00 0.00 3.91
3898 6509 5.287992 GGATACGCGTCCTTATTAGTATTGC 59.712 44.000 18.63 0.00 35.32 3.56
3899 6510 6.384224 TGGATACGCGTCCTTATTAGTATTG 58.616 40.000 18.63 0.00 39.12 1.90
3900 6511 6.579666 TGGATACGCGTCCTTATTAGTATT 57.420 37.500 18.63 0.00 39.12 1.89
3901 6512 6.579666 TTGGATACGCGTCCTTATTAGTAT 57.420 37.500 18.63 0.00 39.12 2.12
3902 6513 6.389830 TTTGGATACGCGTCCTTATTAGTA 57.610 37.500 18.63 0.00 39.12 1.82
3903 6514 4.924305 TTGGATACGCGTCCTTATTAGT 57.076 40.909 18.63 0.00 39.12 2.24
3904 6515 7.878477 TTATTTGGATACGCGTCCTTATTAG 57.122 36.000 18.63 0.00 39.12 1.73
3905 6516 8.836268 ATTTATTTGGATACGCGTCCTTATTA 57.164 30.769 18.63 0.00 39.12 0.98
3906 6517 7.739498 ATTTATTTGGATACGCGTCCTTATT 57.261 32.000 18.63 3.97 39.12 1.40
3907 6518 8.879759 CATATTTATTTGGATACGCGTCCTTAT 58.120 33.333 18.63 2.51 39.12 1.73
3908 6519 7.332430 CCATATTTATTTGGATACGCGTCCTTA 59.668 37.037 18.63 0.00 39.12 2.69
3909 6520 6.148811 CCATATTTATTTGGATACGCGTCCTT 59.851 38.462 18.63 0.84 39.12 3.36
3910 6521 5.642063 CCATATTTATTTGGATACGCGTCCT 59.358 40.000 18.63 3.92 39.12 3.85
3911 6522 5.410439 ACCATATTTATTTGGATACGCGTCC 59.590 40.000 18.63 13.44 42.51 4.79
3912 6523 6.476243 ACCATATTTATTTGGATACGCGTC 57.524 37.500 18.63 0.87 42.51 5.19
3913 6524 6.293735 CCAACCATATTTATTTGGATACGCGT 60.294 38.462 19.17 19.17 40.97 6.01
3914 6525 6.083630 CCAACCATATTTATTTGGATACGCG 58.916 40.000 3.53 3.53 40.97 6.01
3915 6526 6.861055 CACCAACCATATTTATTTGGATACGC 59.139 38.462 6.22 0.00 40.97 4.42
3916 6527 8.160521 TCACCAACCATATTTATTTGGATACG 57.839 34.615 6.22 0.00 40.97 3.06
3917 6528 9.349713 TCTCACCAACCATATTTATTTGGATAC 57.650 33.333 6.22 0.00 40.97 2.24
3960 6571 2.956964 CACCGAATCGCCGCTCTC 60.957 66.667 0.00 0.00 0.00 3.20
3961 6572 4.514577 CCACCGAATCGCCGCTCT 62.515 66.667 0.00 0.00 0.00 4.09
3962 6573 4.508128 TCCACCGAATCGCCGCTC 62.508 66.667 0.00 0.00 0.00 5.03
3963 6574 4.814294 GTCCACCGAATCGCCGCT 62.814 66.667 0.00 0.00 0.00 5.52
3965 6576 4.485834 TCGTCCACCGAATCGCCG 62.486 66.667 0.00 0.00 44.03 6.46
3966 6577 2.582498 CTCGTCCACCGAATCGCC 60.582 66.667 0.00 0.00 46.75 5.54
3967 6578 3.255379 GCTCGTCCACCGAATCGC 61.255 66.667 0.00 0.00 46.75 4.58
3968 6579 1.586564 GAGCTCGTCCACCGAATCG 60.587 63.158 0.00 0.00 46.75 3.34
3969 6580 1.586564 CGAGCTCGTCCACCGAATC 60.587 63.158 27.79 0.00 46.75 2.52
3970 6581 2.490217 CGAGCTCGTCCACCGAAT 59.510 61.111 27.79 0.00 46.75 3.34
3971 6582 4.415332 GCGAGCTCGTCCACCGAA 62.415 66.667 34.46 0.00 46.75 4.30
3973 6584 4.421479 AAGCGAGCTCGTCCACCG 62.421 66.667 34.46 11.18 42.22 4.94
3974 6585 2.811317 CAAGCGAGCTCGTCCACC 60.811 66.667 34.46 19.01 42.22 4.61
3975 6586 3.482783 GCAAGCGAGCTCGTCCAC 61.483 66.667 34.46 19.39 42.22 4.02
3976 6587 3.684990 AGCAAGCGAGCTCGTCCA 61.685 61.111 34.46 0.00 42.18 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.