Multiple sequence alignment - TraesCS2D01G497300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G497300 chr2D 100.000 7125 0 0 2137 9261 593225101 593232225 0.000000e+00 13158.0
1 TraesCS2D01G497300 chr2D 100.000 1819 0 0 1 1819 593222965 593224783 0.000000e+00 3360.0
2 TraesCS2D01G497300 chr2D 83.300 1012 144 18 6452 7455 73123483 73124477 0.000000e+00 909.0
3 TraesCS2D01G497300 chr2D 92.143 280 21 1 8922 9200 506407476 506407197 2.420000e-105 394.0
4 TraesCS2D01G497300 chr2D 86.831 243 27 5 1556 1793 61342925 61343167 5.510000e-67 267.0
5 TraesCS2D01G497300 chr2D 84.305 223 28 7 1577 1794 137813641 137813421 2.620000e-50 211.0
6 TraesCS2D01G497300 chr2D 79.808 104 18 2 1422 1525 495122957 495122857 1.290000e-08 73.1
7 TraesCS2D01G497300 chr2D 85.714 63 8 1 4610 4671 162888510 162888448 2.160000e-06 65.8
8 TraesCS2D01G497300 chr2A 91.835 4997 303 38 3698 8644 728024243 728029184 0.000000e+00 6870.0
9 TraesCS2D01G497300 chr2A 89.930 1569 101 35 2137 3670 728022699 728024245 0.000000e+00 1969.0
10 TraesCS2D01G497300 chr2A 84.601 1091 160 7 6453 7540 61823335 61822250 0.000000e+00 1077.0
11 TraesCS2D01G497300 chr2A 90.717 711 34 15 839 1527 728021543 728022243 0.000000e+00 918.0
12 TraesCS2D01G497300 chr2A 91.722 302 19 5 1524 1819 728022301 728022602 1.860000e-111 414.0
13 TraesCS2D01G497300 chr2A 87.320 347 30 10 502 836 728020458 728020802 1.460000e-102 385.0
14 TraesCS2D01G497300 chr2A 90.233 215 13 4 292 506 728020114 728020320 3.290000e-69 274.0
15 TraesCS2D01G497300 chr2A 76.296 405 85 11 7180 7581 564978838 564978442 1.220000e-48 206.0
16 TraesCS2D01G497300 chr2A 95.763 118 0 3 21 133 727962525 727962642 1.590000e-42 185.0
17 TraesCS2D01G497300 chr2A 94.048 84 5 0 132 215 728018202 728018285 2.710000e-25 128.0
18 TraesCS2D01G497300 chr2A 100.000 42 0 0 225 266 728020067 728020108 2.770000e-10 78.7
19 TraesCS2D01G497300 chr2B 91.105 4351 261 59 2137 6445 719497489 719501755 0.000000e+00 5775.0
20 TraesCS2D01G497300 chr2B 91.944 931 41 15 626 1527 719496108 719497033 0.000000e+00 1273.0
21 TraesCS2D01G497300 chr2B 88.750 800 78 6 6953 7751 719515682 719516470 0.000000e+00 968.0
22 TraesCS2D01G497300 chr2B 92.381 630 19 8 1 630 719494721 719495321 0.000000e+00 870.0
23 TraesCS2D01G497300 chr2B 80.783 1098 186 21 5040 6123 453065402 453064316 0.000000e+00 835.0
24 TraesCS2D01G497300 chr2B 95.733 375 14 2 7975 8347 719516691 719517065 3.700000e-168 603.0
25 TraesCS2D01G497300 chr2B 94.667 300 12 4 1524 1819 719497091 719497390 6.550000e-126 462.0
26 TraesCS2D01G497300 chr2B 86.605 433 25 15 8390 8792 719517058 719517487 1.830000e-121 448.0
27 TraesCS2D01G497300 chr2B 92.115 279 22 0 8922 9200 594102607 594102329 2.420000e-105 394.0
28 TraesCS2D01G497300 chr2B 94.737 209 7 2 7737 7945 719516486 719516690 1.160000e-83 322.0
29 TraesCS2D01G497300 chr7A 90.501 1558 102 27 2137 3673 255920274 255918742 0.000000e+00 2015.0
30 TraesCS2D01G497300 chr7A 90.015 651 42 15 2137 2773 255892393 255891752 0.000000e+00 821.0
31 TraesCS2D01G497300 chr7A 94.175 412 19 1 3698 4104 255918747 255918336 2.840000e-174 623.0
32 TraesCS2D01G497300 chr7A 94.828 58 1 1 1125 1180 255892733 255892790 1.280000e-13 89.8
33 TraesCS2D01G497300 chr6D 87.707 1391 163 8 4682 6067 57169142 57170529 0.000000e+00 1615.0
34 TraesCS2D01G497300 chr6D 83.127 1209 180 13 6446 7651 13965223 13966410 0.000000e+00 1081.0
35 TraesCS2D01G497300 chr6D 86.611 239 28 3 1559 1793 125242741 125242503 2.560000e-65 261.0
36 TraesCS2D01G497300 chr7D 81.805 1407 209 34 4685 6079 180214589 180213218 0.000000e+00 1136.0
37 TraesCS2D01G497300 chr7D 84.250 927 143 3 6451 7375 253157181 253158106 0.000000e+00 900.0
38 TraesCS2D01G497300 chr7D 78.652 178 25 9 4494 4671 20277177 20277341 1.270000e-18 106.0
39 TraesCS2D01G497300 chr7D 88.571 70 5 3 1426 1492 585490146 585490077 2.140000e-11 82.4
40 TraesCS2D01G497300 chr7D 90.000 50 2 3 1481 1527 575069354 575069305 2.790000e-05 62.1
41 TraesCS2D01G497300 chr7B 82.247 1166 191 13 6456 7615 3507866 3509021 0.000000e+00 992.0
42 TraesCS2D01G497300 chr7B 89.286 280 29 1 8922 9200 586248759 586248480 5.320000e-92 350.0
43 TraesCS2D01G497300 chr7B 76.344 186 30 12 2767 2944 651492174 651492353 4.610000e-13 87.9
44 TraesCS2D01G497300 chr7B 75.936 187 29 10 2518 2704 49023122 49022952 2.140000e-11 82.4
45 TraesCS2D01G497300 chr7B 74.104 251 40 21 2736 2976 651172533 651172298 7.710000e-11 80.5
46 TraesCS2D01G497300 chr5A 84.265 966 130 13 6446 7409 379351673 379350728 0.000000e+00 922.0
47 TraesCS2D01G497300 chr5A 91.873 283 22 1 8919 9201 649571401 649571682 2.420000e-105 394.0
48 TraesCS2D01G497300 chr5A 87.755 294 33 2 8926 9216 657391183 657390890 3.200000e-89 340.0
49 TraesCS2D01G497300 chr5A 86.722 241 27 5 1556 1793 343063012 343063250 7.130000e-66 263.0
50 TraesCS2D01G497300 chr1D 83.961 929 135 11 6453 7375 375982216 375983136 0.000000e+00 878.0
51 TraesCS2D01G497300 chr1D 82.814 931 143 13 6452 7375 50990466 50991386 0.000000e+00 817.0
52 TraesCS2D01G497300 chr1D 85.022 227 25 7 1574 1794 231026876 231027099 1.210000e-53 222.0
53 TraesCS2D01G497300 chr1D 87.156 109 12 2 1589 1695 387191529 387191421 1.260000e-23 122.0
54 TraesCS2D01G497300 chr1D 93.878 49 3 0 3382 3430 293462539 293462491 3.590000e-09 75.0
55 TraesCS2D01G497300 chr1D 89.474 57 6 0 1426 1482 483064515 483064459 1.290000e-08 73.1
56 TraesCS2D01G497300 chr1D 84.000 75 8 4 1422 1492 474280037 474280111 1.670000e-07 69.4
57 TraesCS2D01G497300 chr1D 95.000 40 0 2 1455 1492 436710008 436709969 2.790000e-05 62.1
58 TraesCS2D01G497300 chr1D 87.755 49 5 1 1454 1502 194681821 194681774 1.000000e-03 56.5
59 TraesCS2D01G497300 chr6A 85.159 849 121 5 6452 7298 567346298 567347143 0.000000e+00 865.0
60 TraesCS2D01G497300 chr6A 88.710 62 7 0 1430 1491 516599732 516599793 9.970000e-10 76.8
61 TraesCS2D01G497300 chr6A 73.853 218 46 10 3216 3429 531366162 531366372 9.970000e-10 76.8
62 TraesCS2D01G497300 chr6A 87.302 63 8 0 1422 1484 85268244 85268182 1.290000e-08 73.1
63 TraesCS2D01G497300 chr6A 85.294 68 8 1 3362 3429 556103753 556103688 1.670000e-07 69.4
64 TraesCS2D01G497300 chr4A 80.472 1101 199 15 5034 6122 727087245 727086149 0.000000e+00 828.0
65 TraesCS2D01G497300 chr4A 82.506 423 51 10 999 1408 614014652 614015064 5.320000e-92 350.0
66 TraesCS2D01G497300 chr4A 80.149 403 59 13 1016 1404 614004509 614004904 1.970000e-71 281.0
67 TraesCS2D01G497300 chr4A 87.288 236 30 0 4068 4303 614004985 614005220 4.260000e-68 270.0
68 TraesCS2D01G497300 chr4A 87.190 242 26 4 8028 8267 614005956 614006194 4.260000e-68 270.0
69 TraesCS2D01G497300 chr4A 81.452 248 33 9 1557 1794 717454790 717455034 3.410000e-44 191.0
70 TraesCS2D01G497300 chr4A 80.083 241 39 2 4063 4303 622441407 622441176 4.450000e-38 171.0
71 TraesCS2D01G497300 chr4A 80.083 241 39 2 4063 4303 622510474 622510243 4.450000e-38 171.0
72 TraesCS2D01G497300 chr4A 80.083 241 39 2 4063 4303 622559039 622558808 4.450000e-38 171.0
73 TraesCS2D01G497300 chr1B 80.237 1098 195 21 5034 6117 432608904 432607815 0.000000e+00 806.0
74 TraesCS2D01G497300 chr1B 86.667 240 25 7 1559 1794 365447253 365447017 9.230000e-65 259.0
75 TraesCS2D01G497300 chr1B 83.146 178 25 4 4495 4671 29928425 29928252 3.460000e-34 158.0
76 TraesCS2D01G497300 chr1B 74.101 417 64 27 3364 3751 389954361 389953960 2.100000e-26 132.0
77 TraesCS2D01G497300 chr1B 92.105 76 6 0 1018 1093 637368589 637368664 3.540000e-19 108.0
78 TraesCS2D01G497300 chr1B 75.897 195 32 11 3616 3800 673700526 673700337 1.660000e-12 86.1
79 TraesCS2D01G497300 chr3D 77.622 1354 238 43 4791 6123 603692183 603690874 0.000000e+00 761.0
80 TraesCS2D01G497300 chr3D 88.571 280 32 0 8922 9201 541196015 541195736 3.200000e-89 340.0
81 TraesCS2D01G497300 chr3D 80.751 213 32 8 1559 1765 559126491 559126700 3.460000e-34 158.0
82 TraesCS2D01G497300 chr3D 80.000 185 23 9 2770 2947 443719360 443719183 3.510000e-24 124.0
83 TraesCS2D01G497300 chr3D 92.000 75 6 0 1018 1092 511444272 511444198 1.270000e-18 106.0
84 TraesCS2D01G497300 chr3D 76.571 175 31 6 3703 3869 361798620 361798792 4.610000e-13 87.9
85 TraesCS2D01G497300 chr6B 82.673 883 127 14 6682 7560 280363513 280364373 0.000000e+00 760.0
86 TraesCS2D01G497300 chr6B 79.198 1048 195 21 5050 6084 203892290 203893327 0.000000e+00 706.0
87 TraesCS2D01G497300 chr6B 91.071 56 5 0 3376 3431 73171918 73171863 9.970000e-10 76.8
88 TraesCS2D01G497300 chr4D 86.166 506 59 7 918 1413 477089566 477089062 3.810000e-148 536.0
89 TraesCS2D01G497300 chr4D 79.373 606 79 21 7864 8446 477088055 477087473 1.460000e-102 385.0
90 TraesCS2D01G497300 chr4D 91.985 262 19 2 4044 4303 477088965 477088704 5.280000e-97 366.0
91 TraesCS2D01G497300 chr4D 83.125 320 35 17 6140 6441 477088439 477088121 3.290000e-69 274.0
92 TraesCS2D01G497300 chr4D 80.851 94 14 2 1434 1527 502976004 502975915 4.640000e-08 71.3
93 TraesCS2D01G497300 chr4D 97.059 34 1 0 1455 1488 323935115 323935148 3.610000e-04 58.4
94 TraesCS2D01G497300 chr5B 92.086 278 22 0 8924 9201 529577366 529577643 8.720000e-105 392.0
95 TraesCS2D01G497300 chr5B 83.059 425 48 16 999 1404 696165229 696165648 1.900000e-96 364.0
96 TraesCS2D01G497300 chr5B 90.217 276 20 4 8930 9201 376813876 376813604 4.110000e-93 353.0
97 TraesCS2D01G497300 chr5B 86.777 242 24 7 8028 8265 696155965 696156202 7.130000e-66 263.0
98 TraesCS2D01G497300 chr5B 88.073 218 26 0 1187 1404 696154658 696154875 9.230000e-65 259.0
99 TraesCS2D01G497300 chr5B 84.454 238 29 5 1556 1792 292486215 292485985 2.600000e-55 228.0
100 TraesCS2D01G497300 chr5B 81.277 235 35 1 4069 4303 689646451 689646676 2.050000e-41 182.0
101 TraesCS2D01G497300 chr5B 81.277 235 35 1 4069 4303 689670004 689670229 2.050000e-41 182.0
102 TraesCS2D01G497300 chr5B 75.104 241 42 14 3202 3429 506754724 506754489 7.650000e-16 97.1
103 TraesCS2D01G497300 chr5B 82.292 96 11 5 3364 3455 584173053 584172960 2.770000e-10 78.7
104 TraesCS2D01G497300 chr5D 81.250 400 53 13 1019 1404 554577396 554577005 4.200000e-78 303.0
105 TraesCS2D01G497300 chr5D 88.940 217 24 0 1188 1404 554521095 554520879 1.530000e-67 268.0
106 TraesCS2D01G497300 chr5D 87.190 242 23 7 8034 8270 554575593 554575355 1.530000e-67 268.0
107 TraesCS2D01G497300 chr5D 82.449 245 33 9 1556 1793 511950317 511950558 1.220000e-48 206.0
108 TraesCS2D01G497300 chr5D 80.000 240 37 3 4063 4301 546566456 546566685 5.750000e-37 167.0
109 TraesCS2D01G497300 chr5D 86.111 144 17 3 1654 1794 50827988 50827845 1.610000e-32 152.0
110 TraesCS2D01G497300 chr5D 94.521 73 4 0 1015 1087 410278074 410278146 7.600000e-21 113.0
111 TraesCS2D01G497300 chr5D 78.771 179 22 14 4495 4671 413447284 413447120 1.270000e-18 106.0
112 TraesCS2D01G497300 chr5D 81.633 98 13 3 3362 3455 476729636 476729540 9.970000e-10 76.8
113 TraesCS2D01G497300 chr1A 86.022 279 39 0 8922 9200 495715491 495715213 5.440000e-77 300.0
114 TraesCS2D01G497300 chr1A 72.751 378 75 22 3443 3802 580190248 580189881 1.650000e-17 102.0
115 TraesCS2D01G497300 chr1A 82.292 96 11 6 1411 1502 560436349 560436256 2.770000e-10 78.7
116 TraesCS2D01G497300 chr1A 84.906 53 8 0 1430 1482 527956285 527956337 5.000000e-03 54.7
117 TraesCS2D01G497300 chr1A 100.000 28 0 0 1452 1479 133159811 133159838 1.700000e-02 52.8
118 TraesCS2D01G497300 chr3A 84.677 248 29 6 1543 1785 427763566 427763809 1.200000e-58 239.0
119 TraesCS2D01G497300 chr3A 92.000 75 6 0 1018 1092 647499722 647499648 1.270000e-18 106.0
120 TraesCS2D01G497300 chr3A 79.699 133 20 6 2770 2896 584950173 584950042 1.280000e-13 89.8
121 TraesCS2D01G497300 chr3A 86.957 69 6 3 3705 3770 482096945 482097013 3.590000e-09 75.0
122 TraesCS2D01G497300 chr3A 84.932 73 9 2 1422 1492 692902683 692902611 1.290000e-08 73.1
123 TraesCS2D01G497300 chr3B 83.146 178 24 6 4495 4671 33095668 33095496 3.460000e-34 158.0
124 TraesCS2D01G497300 chr3B 92.000 75 6 0 1018 1092 673098168 673098094 1.270000e-18 106.0
125 TraesCS2D01G497300 chrUn 86.047 86 9 3 1410 1492 127004109 127004024 1.280000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G497300 chr2D 593222965 593232225 9260 False 8259.000000 13158 100.000000 1 9261 2 chr2D.!!$F3 9260
1 TraesCS2D01G497300 chr2D 73123483 73124477 994 False 909.000000 909 83.300000 6452 7455 1 chr2D.!!$F2 1003
2 TraesCS2D01G497300 chr2A 728018202 728029184 10982 False 1379.587500 6870 91.975625 132 8644 8 chr2A.!!$F2 8512
3 TraesCS2D01G497300 chr2A 61822250 61823335 1085 True 1077.000000 1077 84.601000 6453 7540 1 chr2A.!!$R1 1087
4 TraesCS2D01G497300 chr2B 719494721 719501755 7034 False 2095.000000 5775 92.524250 1 6445 4 chr2B.!!$F1 6444
5 TraesCS2D01G497300 chr2B 453064316 453065402 1086 True 835.000000 835 80.783000 5040 6123 1 chr2B.!!$R1 1083
6 TraesCS2D01G497300 chr2B 719515682 719517487 1805 False 585.250000 968 91.456250 6953 8792 4 chr2B.!!$F2 1839
7 TraesCS2D01G497300 chr7A 255918336 255920274 1938 True 1319.000000 2015 92.338000 2137 4104 2 chr7A.!!$R2 1967
8 TraesCS2D01G497300 chr7A 255891752 255892393 641 True 821.000000 821 90.015000 2137 2773 1 chr7A.!!$R1 636
9 TraesCS2D01G497300 chr6D 57169142 57170529 1387 False 1615.000000 1615 87.707000 4682 6067 1 chr6D.!!$F2 1385
10 TraesCS2D01G497300 chr6D 13965223 13966410 1187 False 1081.000000 1081 83.127000 6446 7651 1 chr6D.!!$F1 1205
11 TraesCS2D01G497300 chr7D 180213218 180214589 1371 True 1136.000000 1136 81.805000 4685 6079 1 chr7D.!!$R1 1394
12 TraesCS2D01G497300 chr7D 253157181 253158106 925 False 900.000000 900 84.250000 6451 7375 1 chr7D.!!$F2 924
13 TraesCS2D01G497300 chr7B 3507866 3509021 1155 False 992.000000 992 82.247000 6456 7615 1 chr7B.!!$F1 1159
14 TraesCS2D01G497300 chr5A 379350728 379351673 945 True 922.000000 922 84.265000 6446 7409 1 chr5A.!!$R1 963
15 TraesCS2D01G497300 chr1D 375982216 375983136 920 False 878.000000 878 83.961000 6453 7375 1 chr1D.!!$F3 922
16 TraesCS2D01G497300 chr1D 50990466 50991386 920 False 817.000000 817 82.814000 6452 7375 1 chr1D.!!$F1 923
17 TraesCS2D01G497300 chr6A 567346298 567347143 845 False 865.000000 865 85.159000 6452 7298 1 chr6A.!!$F3 846
18 TraesCS2D01G497300 chr4A 727086149 727087245 1096 True 828.000000 828 80.472000 5034 6122 1 chr4A.!!$R4 1088
19 TraesCS2D01G497300 chr4A 614004509 614006194 1685 False 273.666667 281 84.875667 1016 8267 3 chr4A.!!$F3 7251
20 TraesCS2D01G497300 chr1B 432607815 432608904 1089 True 806.000000 806 80.237000 5034 6117 1 chr1B.!!$R4 1083
21 TraesCS2D01G497300 chr3D 603690874 603692183 1309 True 761.000000 761 77.622000 4791 6123 1 chr3D.!!$R4 1332
22 TraesCS2D01G497300 chr6B 280363513 280364373 860 False 760.000000 760 82.673000 6682 7560 1 chr6B.!!$F2 878
23 TraesCS2D01G497300 chr6B 203892290 203893327 1037 False 706.000000 706 79.198000 5050 6084 1 chr6B.!!$F1 1034
24 TraesCS2D01G497300 chr4D 477087473 477089566 2093 True 390.250000 536 85.162250 918 8446 4 chr4D.!!$R2 7528
25 TraesCS2D01G497300 chr5B 696154658 696156202 1544 False 261.000000 263 87.425000 1187 8265 2 chr5B.!!$F5 7078
26 TraesCS2D01G497300 chr5D 554575355 554577396 2041 True 285.500000 303 84.220000 1019 8270 2 chr5D.!!$R5 7251

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 2160 0.107361 CAAACATACTCCCCGACCCC 60.107 60.000 0.00 0.0 0.00 4.95 F
723 3429 0.108186 GCATGACCTCGACACCATCA 60.108 55.000 0.00 0.0 0.00 3.07 F
906 4363 0.929824 CACTTTTGTGCGTGCCTTCG 60.930 55.000 0.00 0.0 44.07 3.79 F
2595 6198 2.490270 AAATTGCAGGGGAGCGAGCT 62.490 55.000 0.00 0.0 37.31 4.09 F
3039 6654 0.544595 GCATCGGGGTAGTAGGGGAT 60.545 60.000 0.00 0.0 0.00 3.85 F
3982 7676 1.136891 CCATGTGACATGCTCGTCCTA 59.863 52.381 19.69 0.0 34.88 2.94 F
5515 9399 0.531532 GAGTCCTGGACATGGATGCG 60.532 60.000 27.48 0.0 35.87 4.73 F
5665 9550 0.535335 GTCTCTGACGGTGGCCATAA 59.465 55.000 9.72 0.0 0.00 1.90 F
5926 9816 0.948678 GGCGTTGTTGTGGAGCTTAA 59.051 50.000 0.00 0.0 0.00 1.85 F
7213 11188 1.214589 GCTAGCTGGAACCGAACGA 59.785 57.895 7.70 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 5746 0.814010 CTATCCGAAAAGGGTGGGCG 60.814 60.000 0.00 0.00 41.52 6.13 R
2615 6221 1.000283 CAAACCTCTCGCTCACTCTGT 60.000 52.381 0.00 0.00 0.00 3.41 R
2616 6222 1.000283 ACAAACCTCTCGCTCACTCTG 60.000 52.381 0.00 0.00 0.00 3.35 R
3635 7270 0.028770 ACGTTGTGACCGTGCAATTG 59.971 50.000 0.00 0.00 37.12 2.32 R
4997 8835 1.000884 GACACGACACCGAACACAAA 58.999 50.000 0.00 0.00 39.50 2.83 R
5665 9550 0.839946 CTTCCAGATCCGGATTGGGT 59.160 55.000 29.61 9.57 38.76 4.51 R
6919 10893 1.135199 AGCGGTGTTACATCTACCACG 60.135 52.381 0.00 0.00 34.10 4.94 R
7655 11635 0.105246 ACATCCAGAGAGCCCCCTAG 60.105 60.000 0.00 0.00 0.00 3.02 R
7656 11636 0.343372 AACATCCAGAGAGCCCCCTA 59.657 55.000 0.00 0.00 0.00 3.53 R
9058 13455 0.034059 CTCAGGACGCTTTGTGAGGT 59.966 55.000 0.00 0.00 34.06 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 5.452078 TTTCAAATTGACCAAGCCACTAG 57.548 39.130 0.00 0.00 0.00 2.57
79 80 6.041865 TCTCCATGAAAATGAAAAGAAAGGCA 59.958 34.615 0.00 0.00 0.00 4.75
80 81 5.990996 TCCATGAAAATGAAAAGAAAGGCAC 59.009 36.000 0.00 0.00 0.00 5.01
272 2045 4.260866 GCAAAGTTGGCGTAGTTTAGTTGA 60.261 41.667 0.00 0.00 0.00 3.18
274 2047 4.332428 AGTTGGCGTAGTTTAGTTGAGT 57.668 40.909 0.00 0.00 0.00 3.41
275 2048 4.056050 AGTTGGCGTAGTTTAGTTGAGTG 58.944 43.478 0.00 0.00 0.00 3.51
276 2049 2.409975 TGGCGTAGTTTAGTTGAGTGC 58.590 47.619 0.00 0.00 0.00 4.40
277 2050 1.730612 GGCGTAGTTTAGTTGAGTGCC 59.269 52.381 0.00 0.00 0.00 5.01
278 2051 2.409975 GCGTAGTTTAGTTGAGTGCCA 58.590 47.619 0.00 0.00 0.00 4.92
279 2052 2.412089 GCGTAGTTTAGTTGAGTGCCAG 59.588 50.000 0.00 0.00 0.00 4.85
280 2053 3.650139 CGTAGTTTAGTTGAGTGCCAGT 58.350 45.455 0.00 0.00 0.00 4.00
301 2074 1.330234 TGCCACACACAGAAATGCAT 58.670 45.000 0.00 0.00 0.00 3.96
382 2155 1.278127 AGGTGTCAAACATACTCCCCG 59.722 52.381 0.00 0.00 32.14 5.73
383 2156 1.276989 GGTGTCAAACATACTCCCCGA 59.723 52.381 0.00 0.00 0.00 5.14
384 2157 2.344025 GTGTCAAACATACTCCCCGAC 58.656 52.381 0.00 0.00 0.00 4.79
385 2158 1.276989 TGTCAAACATACTCCCCGACC 59.723 52.381 0.00 0.00 0.00 4.79
386 2159 0.906775 TCAAACATACTCCCCGACCC 59.093 55.000 0.00 0.00 0.00 4.46
387 2160 0.107361 CAAACATACTCCCCGACCCC 60.107 60.000 0.00 0.00 0.00 4.95
536 2451 2.015736 ACTGTTGCATCATCCGTCTC 57.984 50.000 0.00 0.00 0.00 3.36
537 2452 0.926155 CTGTTGCATCATCCGTCTCG 59.074 55.000 0.00 0.00 0.00 4.04
551 2466 1.377202 TCTCGGGCAATGTTCTGGC 60.377 57.895 0.00 0.00 41.03 4.85
718 3424 2.414559 CCATTTTGCATGACCTCGACAC 60.415 50.000 0.00 0.00 0.00 3.67
723 3429 0.108186 GCATGACCTCGACACCATCA 60.108 55.000 0.00 0.00 0.00 3.07
724 3430 1.473965 GCATGACCTCGACACCATCAT 60.474 52.381 0.00 0.00 0.00 2.45
733 3442 4.747108 CCTCGACACCATCATAGTCAAATC 59.253 45.833 0.00 0.00 32.68 2.17
739 3448 4.747108 CACCATCATAGTCAAATCCGACTC 59.253 45.833 0.00 0.00 42.70 3.36
740 3449 4.202264 ACCATCATAGTCAAATCCGACTCC 60.202 45.833 0.00 0.00 42.70 3.85
742 3451 2.698797 TCATAGTCAAATCCGACTCCCC 59.301 50.000 0.00 0.00 42.70 4.81
743 3452 1.108776 TAGTCAAATCCGACTCCCCG 58.891 55.000 0.00 0.00 42.70 5.73
746 3455 1.153429 CAAATCCGACTCCCCGACC 60.153 63.158 0.00 0.00 0.00 4.79
747 3456 1.611261 AAATCCGACTCCCCGACCA 60.611 57.895 0.00 0.00 0.00 4.02
748 3457 1.196104 AAATCCGACTCCCCGACCAA 61.196 55.000 0.00 0.00 0.00 3.67
749 3458 1.196104 AATCCGACTCCCCGACCAAA 61.196 55.000 0.00 0.00 0.00 3.28
750 3459 1.196104 ATCCGACTCCCCGACCAAAA 61.196 55.000 0.00 0.00 0.00 2.44
751 3460 1.071814 CCGACTCCCCGACCAAAAA 59.928 57.895 0.00 0.00 0.00 1.94
781 3497 8.574196 AAAAACAGACAAGTATACAATTGCAC 57.426 30.769 5.05 1.27 0.00 4.57
782 3498 7.510549 AAACAGACAAGTATACAATTGCACT 57.489 32.000 5.05 3.76 0.00 4.40
786 3502 6.317140 CAGACAAGTATACAATTGCACTCCAT 59.683 38.462 5.05 0.00 0.00 3.41
790 3506 7.609918 ACAAGTATACAATTGCACTCCATGTAA 59.390 33.333 5.05 0.00 37.31 2.41
791 3507 8.458052 CAAGTATACAATTGCACTCCATGTAAA 58.542 33.333 5.05 0.00 36.41 2.01
843 4297 6.592607 GTCATGTTCATTTTCTCCGGTTAGTA 59.407 38.462 0.00 0.00 0.00 1.82
878 4332 4.250464 CCTCCAACGTTGACAGCTTATTA 58.750 43.478 29.35 1.20 0.00 0.98
880 4334 5.354234 CCTCCAACGTTGACAGCTTATTATT 59.646 40.000 29.35 0.00 0.00 1.40
884 4338 6.861055 CCAACGTTGACAGCTTATTATTTTGT 59.139 34.615 29.35 0.00 0.00 2.83
885 4339 7.381139 CCAACGTTGACAGCTTATTATTTTGTT 59.619 33.333 29.35 0.00 0.00 2.83
886 4340 7.851822 ACGTTGACAGCTTATTATTTTGTTG 57.148 32.000 0.00 0.00 0.00 3.33
887 4341 6.362283 ACGTTGACAGCTTATTATTTTGTTGC 59.638 34.615 0.00 0.00 0.00 4.17
888 4342 6.362016 CGTTGACAGCTTATTATTTTGTTGCA 59.638 34.615 0.00 0.00 0.00 4.08
889 4343 7.501515 GTTGACAGCTTATTATTTTGTTGCAC 58.498 34.615 0.00 0.00 0.00 4.57
890 4344 6.980593 TGACAGCTTATTATTTTGTTGCACT 58.019 32.000 0.00 0.00 0.00 4.40
906 4363 0.929824 CACTTTTGTGCGTGCCTTCG 60.930 55.000 0.00 0.00 44.07 3.79
930 4391 6.405953 CGAGTCCTATCCGGCTATAAATTCAT 60.406 42.308 0.00 0.00 0.00 2.57
1094 4572 5.568620 AGCAAAGGGATAGGGTAAGTATG 57.431 43.478 0.00 0.00 0.00 2.39
1397 4913 6.426980 TTCAATAGCAAGCTTGACATACTG 57.573 37.500 30.39 17.33 31.41 2.74
1409 4925 7.493367 AGCTTGACATACTGGTAAGTCTATTC 58.507 38.462 14.36 5.43 37.88 1.75
1440 4956 6.506538 AATTGGTCTGTCTAAGGCATATCT 57.493 37.500 0.00 0.00 29.21 1.98
1445 4961 8.721133 TGGTCTGTCTAAGGCATATCTAAATA 57.279 34.615 0.00 0.00 29.21 1.40
1479 4995 8.454106 GTTATTGCACATCTAAGTGACTCAATT 58.546 33.333 0.00 0.00 42.05 2.32
1529 5116 4.084745 TGCACGAATCTTCACGTAAAACTC 60.085 41.667 0.00 0.00 40.76 3.01
2527 6130 8.592105 TGTTTGAAAAATCCATGAACATCTTC 57.408 30.769 0.00 0.00 0.00 2.87
2591 6194 4.647424 TTTATAAAATTGCAGGGGAGCG 57.353 40.909 0.00 0.00 37.31 5.03
2595 6198 2.490270 AAATTGCAGGGGAGCGAGCT 62.490 55.000 0.00 0.00 37.31 4.09
2615 6221 2.927856 TGGAGCAGGGAGGCGAAA 60.928 61.111 0.00 0.00 39.27 3.46
2616 6222 2.436824 GGAGCAGGGAGGCGAAAC 60.437 66.667 0.00 0.00 39.27 2.78
2617 6223 2.347490 GAGCAGGGAGGCGAAACA 59.653 61.111 0.00 0.00 39.27 2.83
2640 6246 2.032681 AGCGAGAGGTTTGTGGGC 59.967 61.111 0.00 0.00 40.01 5.36
2652 6258 2.066700 TTGTGGGCTGGCTCATGTGA 62.067 55.000 0.00 0.00 0.00 3.58
2683 6294 5.350504 ACAACAATTCCATGGTTTCAACA 57.649 34.783 12.58 0.00 0.00 3.33
2760 6371 9.088987 AGGTCAAAATGTTTAAAGATACCACAT 57.911 29.630 14.25 0.61 0.00 3.21
2761 6372 9.139174 GGTCAAAATGTTTAAAGATACCACATG 57.861 33.333 9.17 0.00 0.00 3.21
2762 6373 9.906660 GTCAAAATGTTTAAAGATACCACATGA 57.093 29.630 0.00 0.00 0.00 3.07
2765 6376 7.404671 AATGTTTAAAGATACCACATGACCC 57.595 36.000 0.00 0.00 0.00 4.46
2802 6413 7.358263 TCCACTCTCCTCTCAGAATAAATACT 58.642 38.462 0.00 0.00 0.00 2.12
2818 6429 1.095600 TACTGTCTCTAGCAGCACCG 58.904 55.000 0.00 0.00 37.47 4.94
2909 6522 8.751302 AAAATGAAACAACCGACCATAATAAC 57.249 30.769 0.00 0.00 0.00 1.89
3039 6654 0.544595 GCATCGGGGTAGTAGGGGAT 60.545 60.000 0.00 0.00 0.00 3.85
3071 6686 2.594303 CTGAAAGGGTGCGTGCCA 60.594 61.111 0.23 0.00 0.00 4.92
3103 6718 2.099427 CGGGTTTTCGGGTTTTGAGAAA 59.901 45.455 0.00 0.00 32.76 2.52
3148 6763 8.438676 TCTTCTTTTTGTGTTTCAACCAAAAA 57.561 26.923 19.53 19.53 41.33 1.94
3276 6891 8.428459 TGAAAAGTTGCGAAAATTTCAAAAAC 57.572 26.923 13.36 6.76 37.14 2.43
3277 6892 8.070171 TGAAAAGTTGCGAAAATTTCAAAAACA 58.930 25.926 13.36 2.19 37.14 2.83
3278 6893 7.774224 AAAGTTGCGAAAATTTCAAAAACAC 57.226 28.000 6.53 0.00 0.00 3.32
3279 6894 6.720012 AGTTGCGAAAATTTCAAAAACACT 57.280 29.167 6.53 0.00 0.00 3.55
3280 6895 7.820044 AGTTGCGAAAATTTCAAAAACACTA 57.180 28.000 6.53 0.00 0.00 2.74
3281 6896 8.419076 AGTTGCGAAAATTTCAAAAACACTAT 57.581 26.923 6.53 0.00 0.00 2.12
3282 6897 8.327429 AGTTGCGAAAATTTCAAAAACACTATG 58.673 29.630 6.53 0.00 0.00 2.23
3285 6900 9.039870 TGCGAAAATTTCAAAAACACTATGAAT 57.960 25.926 6.53 0.00 33.45 2.57
3286 6901 9.862585 GCGAAAATTTCAAAAACACTATGAATT 57.137 25.926 6.53 0.00 33.45 2.17
3635 7270 4.755123 AGCCCATATGAGCGTTATAACAAC 59.245 41.667 15.67 6.93 0.00 3.32
3673 7308 1.413077 GTCGAATAAGACCTCCAGGGG 59.587 57.143 0.00 0.00 40.27 4.79
3685 7320 2.282462 CAGGGGCTCACAACCACC 60.282 66.667 0.00 0.00 0.00 4.61
3688 7323 2.597510 GGGCTCACAACCACCACC 60.598 66.667 0.00 0.00 0.00 4.61
3789 7424 2.489329 CTCCAACAGCAACCTAACATGG 59.511 50.000 0.00 0.00 0.00 3.66
3802 7437 5.661458 ACCTAACATGGTAGACGAATGAAG 58.339 41.667 19.72 1.52 38.79 3.02
3843 7478 1.878953 AGGCAGTGTAGACAAAACCG 58.121 50.000 0.00 0.00 0.00 4.44
3909 7592 7.673641 AGAGTTGATCCTATGAGTGAAGAAT 57.326 36.000 0.00 0.00 0.00 2.40
3915 7598 4.998788 TCCTATGAGTGAAGAATGACACG 58.001 43.478 0.00 0.00 41.22 4.49
3951 7639 7.489757 GCATTAGCCTCTAGTAAATTCTATCCG 59.510 40.741 0.00 0.00 33.58 4.18
3982 7676 1.136891 CCATGTGACATGCTCGTCCTA 59.863 52.381 19.69 0.00 34.88 2.94
4023 7717 2.291190 CAGCTCGCTCTAAGTAGGGTAC 59.709 54.545 0.00 0.00 0.00 3.34
4455 8280 6.985059 ACTGTGTCTCTTTTAGTTACAGTTCC 59.015 38.462 0.00 0.00 43.92 3.62
4495 8326 2.085320 TGTAGAGCAGAACCTCGTCTC 58.915 52.381 0.00 0.00 36.95 3.36
4678 8510 1.667830 CGTGGGACAGCGACACAAT 60.668 57.895 0.00 0.00 41.80 2.71
4722 8554 3.626924 GTGGCGTCCTGGAGTGGT 61.627 66.667 0.00 0.00 0.00 4.16
4725 8557 3.626924 GCGTCCTGGAGTGGTGGT 61.627 66.667 0.00 0.00 0.00 4.16
4985 8823 1.584495 CGGATGGTGCGGATCGATA 59.416 57.895 0.00 0.00 0.00 2.92
4997 8835 1.584380 GATCGATAGGTAGGCGGCGT 61.584 60.000 9.37 0.00 0.00 5.68
5024 8864 1.293498 GGTGTCGTGTCTCTGCCAT 59.707 57.895 0.00 0.00 0.00 4.40
5026 8866 1.071605 GTGTCGTGTCTCTGCCATTC 58.928 55.000 0.00 0.00 0.00 2.67
5146 9004 2.789917 GAGTCGGAGTTCGCGCTA 59.210 61.111 5.56 0.00 39.05 4.26
5198 9080 4.065281 CCCGTGGGTCGTGAGGTC 62.065 72.222 0.00 0.00 37.94 3.85
5199 9081 4.065281 CCGTGGGTCGTGAGGTCC 62.065 72.222 0.00 0.00 37.94 4.46
5200 9082 4.065281 CGTGGGTCGTGAGGTCCC 62.065 72.222 0.38 0.38 42.79 4.46
5201 9083 2.603776 GTGGGTCGTGAGGTCCCT 60.604 66.667 8.79 0.00 42.87 4.20
5202 9084 2.283676 TGGGTCGTGAGGTCCCTC 60.284 66.667 8.79 6.38 42.87 4.30
5203 9085 2.037527 GGGTCGTGAGGTCCCTCT 59.962 66.667 14.20 0.00 43.12 3.69
5204 9086 2.053277 GGGTCGTGAGGTCCCTCTC 61.053 68.421 14.20 9.73 43.12 3.20
5205 9087 2.053277 GGTCGTGAGGTCCCTCTCC 61.053 68.421 14.20 7.91 43.12 3.71
5206 9088 1.000646 GTCGTGAGGTCCCTCTCCT 60.001 63.158 14.20 0.00 43.12 3.69
5210 9092 2.043852 GAGGTCCCTCTCCTCGCA 60.044 66.667 6.08 0.00 41.36 5.10
5338 9220 2.398588 GGACATCATGGAGTAGGGTCA 58.601 52.381 0.00 0.00 0.00 4.02
5350 9233 2.761160 GGGTCACCCCCGTTCATT 59.239 61.111 0.00 0.00 45.80 2.57
5515 9399 0.531532 GAGTCCTGGACATGGATGCG 60.532 60.000 27.48 0.00 35.87 4.73
5560 9444 2.989639 CATGGTTGGCTCTCCGGA 59.010 61.111 2.93 2.93 34.14 5.14
5664 9549 0.613572 TGTCTCTGACGGTGGCCATA 60.614 55.000 9.72 0.00 34.95 2.74
5665 9550 0.535335 GTCTCTGACGGTGGCCATAA 59.465 55.000 9.72 0.00 0.00 1.90
5696 9581 2.437085 TCTGGAAGATCTACGCTCCA 57.563 50.000 12.33 12.33 38.67 3.86
5803 9691 1.287425 GGGCGTCGTTATCTTCTTGG 58.713 55.000 0.00 0.00 0.00 3.61
5829 9717 2.042537 TCATGGCGCTCCTCTCCT 60.043 61.111 7.64 0.00 0.00 3.69
5926 9816 0.948678 GGCGTTGTTGTGGAGCTTAA 59.051 50.000 0.00 0.00 0.00 1.85
5949 9839 1.270550 GTTATAGGGCTTAGCGCGGTA 59.729 52.381 15.05 15.05 46.18 4.02
6027 9945 4.277515 GATCCAATCATCTTGGGATCGA 57.722 45.455 0.00 0.00 44.40 3.59
6089 10007 5.408604 GGTCGTGTACTCTGATTGATTGTTT 59.591 40.000 0.00 0.00 0.00 2.83
6090 10008 6.299604 GTCGTGTACTCTGATTGATTGTTTG 58.700 40.000 0.00 0.00 0.00 2.93
6095 10013 9.382244 GTGTACTCTGATTGATTGTTTGTTTAC 57.618 33.333 0.00 0.00 0.00 2.01
6111 10029 2.172851 TTACATATAAAGCGGGGCGG 57.827 50.000 0.00 0.00 0.00 6.13
6644 10616 3.191371 GTCTGAGCCAAATACCAAACAGG 59.809 47.826 0.00 0.00 45.67 4.00
7213 11188 1.214589 GCTAGCTGGAACCGAACGA 59.785 57.895 7.70 0.00 0.00 3.85
7418 11393 2.046314 GGGAGCTAGCACCGCAAA 60.046 61.111 22.76 0.00 0.00 3.68
7597 11577 2.972505 CGCGTCTTGGTTGGCTGT 60.973 61.111 0.00 0.00 0.00 4.40
7674 11654 0.105246 CTAGGGGGCTCTCTGGATGT 60.105 60.000 0.00 0.00 0.00 3.06
7781 11793 3.458189 CAAAATAGCTACTCCCTCCGTG 58.542 50.000 0.00 0.00 0.00 4.94
8064 12410 9.613957 GTTTTCTTATCTTTTCTAACCAAGAGC 57.386 33.333 0.00 0.00 35.05 4.09
8075 12423 5.865085 TCTAACCAAGAGCATAACAAGTGT 58.135 37.500 0.00 0.00 0.00 3.55
8154 12504 4.778143 ATTGGGACGGAGCGGCAC 62.778 66.667 1.45 0.00 39.65 5.01
8388 12742 4.397348 ACCATGGTGAACGCCTTC 57.603 55.556 18.99 0.00 0.00 3.46
8527 12881 7.362662 TGTCTTTTATGCTGAATGAACAAGAC 58.637 34.615 0.00 0.00 0.00 3.01
8528 12882 7.229306 TGTCTTTTATGCTGAATGAACAAGACT 59.771 33.333 9.06 0.00 0.00 3.24
8583 12938 6.532988 AGATGGAGGACTACTGTTCTTAAC 57.467 41.667 0.00 0.00 30.76 2.01
8604 12976 4.813027 ACTATAAGCTTTTCCACGACGAA 58.187 39.130 3.20 0.00 0.00 3.85
8612 12984 0.601841 TTCCACGACGAAAGCTTCCC 60.602 55.000 0.00 0.00 0.00 3.97
8614 12986 2.033194 CACGACGAAAGCTTCCCCC 61.033 63.158 0.00 0.00 0.00 5.40
8615 12987 2.813908 CGACGAAAGCTTCCCCCG 60.814 66.667 0.00 4.22 0.00 5.73
8672 13046 1.001633 CACCTACACACCGGTAAGCTT 59.998 52.381 6.87 3.48 30.91 3.74
8673 13047 1.001633 ACCTACACACCGGTAAGCTTG 59.998 52.381 6.87 2.02 0.00 4.01
8674 13048 1.674817 CCTACACACCGGTAAGCTTGG 60.675 57.143 6.87 4.28 0.00 3.61
8691 13070 6.869206 AGCTTGGTTACTCTAGGTCATTAA 57.131 37.500 0.00 0.00 0.00 1.40
8692 13071 6.879400 AGCTTGGTTACTCTAGGTCATTAAG 58.121 40.000 0.00 0.00 0.00 1.85
8694 13073 6.757478 GCTTGGTTACTCTAGGTCATTAAGTC 59.243 42.308 0.00 0.00 0.00 3.01
8696 13075 7.406031 TGGTTACTCTAGGTCATTAAGTCAG 57.594 40.000 0.00 0.00 0.00 3.51
8697 13076 6.127423 TGGTTACTCTAGGTCATTAAGTCAGC 60.127 42.308 0.00 0.00 0.00 4.26
8698 13077 6.127423 GGTTACTCTAGGTCATTAAGTCAGCA 60.127 42.308 0.00 0.00 0.00 4.41
8699 13078 5.331876 ACTCTAGGTCATTAAGTCAGCAC 57.668 43.478 0.00 0.00 0.00 4.40
8713 13098 4.314440 GCACCGGTGAGTCAGCCA 62.314 66.667 38.30 0.00 0.00 4.75
8741 13126 3.270027 CATGCCAATGTTCCTCGTCTAA 58.730 45.455 0.00 0.00 0.00 2.10
8742 13127 2.972625 TGCCAATGTTCCTCGTCTAAG 58.027 47.619 0.00 0.00 0.00 2.18
8743 13128 1.666189 GCCAATGTTCCTCGTCTAAGC 59.334 52.381 0.00 0.00 0.00 3.09
8745 13130 2.093447 CCAATGTTCCTCGTCTAAGCCT 60.093 50.000 0.00 0.00 0.00 4.58
8746 13131 2.932614 CAATGTTCCTCGTCTAAGCCTG 59.067 50.000 0.00 0.00 0.00 4.85
8748 13133 2.457598 TGTTCCTCGTCTAAGCCTGAT 58.542 47.619 0.00 0.00 0.00 2.90
8749 13134 2.427453 TGTTCCTCGTCTAAGCCTGATC 59.573 50.000 0.00 0.00 0.00 2.92
8770 13167 3.123620 GCACCTGAGAAGCCGCAG 61.124 66.667 0.00 0.00 39.51 5.18
8776 13173 3.934684 GAGAAGCCGCAGCATCGC 61.935 66.667 0.00 0.00 41.60 4.58
8797 13194 3.413522 GGGACGTCGACCAAGTAAG 57.586 57.895 15.49 0.00 0.00 2.34
8798 13195 0.735287 GGGACGTCGACCAAGTAAGC 60.735 60.000 15.49 0.00 0.00 3.09
8799 13196 1.069378 GGACGTCGACCAAGTAAGCG 61.069 60.000 10.58 0.00 0.00 4.68
8800 13197 0.110056 GACGTCGACCAAGTAAGCGA 60.110 55.000 10.58 0.00 0.00 4.93
8801 13198 0.109873 ACGTCGACCAAGTAAGCGAG 60.110 55.000 10.58 0.00 33.00 5.03
8802 13199 0.109873 CGTCGACCAAGTAAGCGAGT 60.110 55.000 10.58 0.00 33.00 4.18
8803 13200 1.129251 CGTCGACCAAGTAAGCGAGTA 59.871 52.381 10.58 0.00 33.00 2.59
8804 13201 2.513893 GTCGACCAAGTAAGCGAGTAC 58.486 52.381 3.51 0.00 33.00 2.73
8805 13202 1.470098 TCGACCAAGTAAGCGAGTACC 59.530 52.381 0.00 0.00 0.00 3.34
8806 13203 1.468736 CGACCAAGTAAGCGAGTACCC 60.469 57.143 0.00 0.00 0.00 3.69
8807 13204 1.547372 GACCAAGTAAGCGAGTACCCA 59.453 52.381 0.00 0.00 0.00 4.51
8808 13205 1.549170 ACCAAGTAAGCGAGTACCCAG 59.451 52.381 0.00 0.00 0.00 4.45
8809 13206 1.641577 CAAGTAAGCGAGTACCCAGC 58.358 55.000 0.00 0.00 0.00 4.85
8810 13207 0.535797 AAGTAAGCGAGTACCCAGCC 59.464 55.000 0.00 0.00 0.00 4.85
8811 13208 0.324460 AGTAAGCGAGTACCCAGCCT 60.324 55.000 0.00 0.00 0.00 4.58
8812 13209 1.064166 AGTAAGCGAGTACCCAGCCTA 60.064 52.381 0.00 0.00 0.00 3.93
8813 13210 1.066757 GTAAGCGAGTACCCAGCCTAC 59.933 57.143 0.00 0.00 0.00 3.18
8814 13211 0.324460 AAGCGAGTACCCAGCCTACT 60.324 55.000 0.00 0.00 0.00 2.57
8815 13212 0.752376 AGCGAGTACCCAGCCTACTC 60.752 60.000 0.00 0.00 37.73 2.59
8817 13214 2.416901 GAGTACCCAGCCTACTCGG 58.583 63.158 0.00 0.00 32.83 4.63
8836 13233 1.762708 GCTAAGGCCCAAACTATGCA 58.237 50.000 0.00 0.00 0.00 3.96
8837 13234 2.099405 GCTAAGGCCCAAACTATGCAA 58.901 47.619 0.00 0.00 0.00 4.08
8838 13235 2.099756 GCTAAGGCCCAAACTATGCAAG 59.900 50.000 0.00 0.00 0.00 4.01
8839 13236 2.309136 AAGGCCCAAACTATGCAAGT 57.691 45.000 0.00 0.00 41.49 3.16
8840 13237 1.839424 AGGCCCAAACTATGCAAGTC 58.161 50.000 0.00 0.00 37.50 3.01
8841 13238 0.451783 GGCCCAAACTATGCAAGTCG 59.548 55.000 0.00 0.00 37.50 4.18
8842 13239 1.448985 GCCCAAACTATGCAAGTCGA 58.551 50.000 0.00 0.00 37.50 4.20
8843 13240 1.398390 GCCCAAACTATGCAAGTCGAG 59.602 52.381 0.00 0.00 37.50 4.04
8844 13241 2.699954 CCCAAACTATGCAAGTCGAGT 58.300 47.619 0.00 0.00 37.50 4.18
8845 13242 2.416547 CCCAAACTATGCAAGTCGAGTG 59.583 50.000 0.00 0.00 37.50 3.51
8846 13243 3.067106 CCAAACTATGCAAGTCGAGTGT 58.933 45.455 0.00 0.00 37.50 3.55
8847 13244 3.498397 CCAAACTATGCAAGTCGAGTGTT 59.502 43.478 0.00 0.00 37.50 3.32
8848 13245 4.688879 CCAAACTATGCAAGTCGAGTGTTA 59.311 41.667 0.00 0.00 37.50 2.41
8849 13246 5.389516 CCAAACTATGCAAGTCGAGTGTTAC 60.390 44.000 0.00 0.00 37.50 2.50
8850 13247 4.514781 ACTATGCAAGTCGAGTGTTACA 57.485 40.909 0.00 0.00 30.33 2.41
8851 13248 4.235360 ACTATGCAAGTCGAGTGTTACAC 58.765 43.478 7.50 7.50 30.33 2.90
8852 13249 4.022242 ACTATGCAAGTCGAGTGTTACACT 60.022 41.667 18.68 18.68 40.15 3.55
8853 13250 7.278950 AACTATGCAAGTCGAGTGTTACACTC 61.279 42.308 29.49 29.49 46.15 3.51
8862 13259 3.911661 AGTGTTACACTCGGTCTACAC 57.088 47.619 12.76 0.00 41.21 2.90
8863 13260 2.555757 AGTGTTACACTCGGTCTACACC 59.444 50.000 12.76 0.00 41.21 4.16
8864 13261 1.888512 TGTTACACTCGGTCTACACCC 59.111 52.381 0.00 0.00 40.01 4.61
8865 13262 1.135575 GTTACACTCGGTCTACACCCG 60.136 57.143 0.00 0.00 46.83 5.28
8866 13263 0.677731 TACACTCGGTCTACACCCGG 60.678 60.000 0.00 0.00 45.51 5.73
8867 13264 3.066814 ACTCGGTCTACACCCGGC 61.067 66.667 0.00 0.00 45.51 6.13
8868 13265 3.834799 CTCGGTCTACACCCGGCC 61.835 72.222 0.00 0.00 45.51 6.13
8871 13268 3.152400 GGTCTACACCCGGCCGAT 61.152 66.667 30.73 12.17 36.54 4.18
8872 13269 1.829533 GGTCTACACCCGGCCGATA 60.830 63.158 30.73 12.31 36.54 2.92
8873 13270 1.394266 GGTCTACACCCGGCCGATAA 61.394 60.000 30.73 6.06 36.54 1.75
8874 13271 0.249197 GTCTACACCCGGCCGATAAC 60.249 60.000 30.73 10.72 0.00 1.89
8875 13272 0.396139 TCTACACCCGGCCGATAACT 60.396 55.000 30.73 7.15 0.00 2.24
8876 13273 0.249322 CTACACCCGGCCGATAACTG 60.249 60.000 30.73 15.66 0.00 3.16
8877 13274 2.300850 TACACCCGGCCGATAACTGC 62.301 60.000 30.73 0.00 0.00 4.40
8878 13275 4.524318 ACCCGGCCGATAACTGCG 62.524 66.667 30.73 6.78 0.00 5.18
8879 13276 4.524318 CCCGGCCGATAACTGCGT 62.524 66.667 30.73 0.00 0.00 5.24
8880 13277 3.261951 CCGGCCGATAACTGCGTG 61.262 66.667 30.73 0.44 0.00 5.34
8881 13278 3.925238 CGGCCGATAACTGCGTGC 61.925 66.667 24.07 0.00 0.00 5.34
8882 13279 3.925238 GGCCGATAACTGCGTGCG 61.925 66.667 0.00 0.00 0.00 5.34
8883 13280 4.575245 GCCGATAACTGCGTGCGC 62.575 66.667 9.85 9.85 42.35 6.09
8884 13281 2.885644 CCGATAACTGCGTGCGCT 60.886 61.111 17.49 0.14 42.51 5.92
8885 13282 2.452813 CCGATAACTGCGTGCGCTT 61.453 57.895 17.49 7.16 42.51 4.68
8886 13283 1.143373 CCGATAACTGCGTGCGCTTA 61.143 55.000 17.49 9.08 42.51 3.09
8887 13284 0.044161 CGATAACTGCGTGCGCTTAC 60.044 55.000 17.49 0.00 42.51 2.34
8888 13285 0.996462 GATAACTGCGTGCGCTTACA 59.004 50.000 17.49 2.46 42.51 2.41
8889 13286 0.719465 ATAACTGCGTGCGCTTACAC 59.281 50.000 17.49 0.00 42.51 2.90
8890 13287 0.319211 TAACTGCGTGCGCTTACACT 60.319 50.000 17.49 0.00 42.51 3.55
8891 13288 1.557443 AACTGCGTGCGCTTACACTC 61.557 55.000 17.49 0.00 42.51 3.51
8892 13289 2.021584 CTGCGTGCGCTTACACTCA 61.022 57.895 17.49 0.00 42.51 3.41
8893 13290 2.215478 CTGCGTGCGCTTACACTCAC 62.215 60.000 17.49 0.00 42.51 3.51
8894 13291 2.763248 CGTGCGCTTACACTCACG 59.237 61.111 9.73 3.16 44.62 4.35
8900 13297 2.696076 CGCTTACACTCACGCAATAC 57.304 50.000 0.00 0.00 0.00 1.89
8901 13298 1.989864 CGCTTACACTCACGCAATACA 59.010 47.619 0.00 0.00 0.00 2.29
8902 13299 2.222508 CGCTTACACTCACGCAATACAC 60.223 50.000 0.00 0.00 0.00 2.90
8903 13300 2.093783 GCTTACACTCACGCAATACACC 59.906 50.000 0.00 0.00 0.00 4.16
8904 13301 2.373540 TACACTCACGCAATACACCC 57.626 50.000 0.00 0.00 0.00 4.61
8905 13302 0.669318 ACACTCACGCAATACACCCG 60.669 55.000 0.00 0.00 0.00 5.28
8906 13303 1.079405 ACTCACGCAATACACCCGG 60.079 57.895 0.00 0.00 0.00 5.73
8907 13304 2.435234 TCACGCAATACACCCGGC 60.435 61.111 0.00 0.00 0.00 6.13
8908 13305 3.505184 CACGCAATACACCCGGCC 61.505 66.667 0.00 0.00 0.00 6.13
8910 13307 4.823419 CGCAATACACCCGGCCGA 62.823 66.667 30.73 6.25 0.00 5.54
8911 13308 2.203153 GCAATACACCCGGCCGAT 60.203 61.111 30.73 12.17 0.00 4.18
8912 13309 1.070105 GCAATACACCCGGCCGATA 59.930 57.895 30.73 13.75 0.00 2.92
8913 13310 0.533308 GCAATACACCCGGCCGATAA 60.533 55.000 30.73 7.47 0.00 1.75
8914 13311 1.223187 CAATACACCCGGCCGATAAC 58.777 55.000 30.73 0.00 0.00 1.89
8915 13312 1.125633 AATACACCCGGCCGATAACT 58.874 50.000 30.73 7.15 0.00 2.24
8916 13313 1.999648 ATACACCCGGCCGATAACTA 58.000 50.000 30.73 9.36 0.00 2.24
8917 13314 1.321474 TACACCCGGCCGATAACTAG 58.679 55.000 30.73 7.66 0.00 2.57
8918 13315 1.366366 CACCCGGCCGATAACTAGG 59.634 63.158 30.73 20.07 0.00 3.02
8919 13316 1.075748 ACCCGGCCGATAACTAGGT 60.076 57.895 30.73 20.83 0.00 3.08
8920 13317 1.366366 CCCGGCCGATAACTAGGTG 59.634 63.158 30.73 5.03 0.00 4.00
8921 13318 1.397390 CCCGGCCGATAACTAGGTGT 61.397 60.000 30.73 0.00 0.00 4.16
8922 13319 1.321474 CCGGCCGATAACTAGGTGTA 58.679 55.000 30.73 0.00 0.00 2.90
8923 13320 1.682854 CCGGCCGATAACTAGGTGTAA 59.317 52.381 30.73 0.00 0.00 2.41
8924 13321 2.288030 CCGGCCGATAACTAGGTGTAAG 60.288 54.545 30.73 0.00 0.00 2.34
8925 13322 2.620115 CGGCCGATAACTAGGTGTAAGA 59.380 50.000 24.07 0.00 0.00 2.10
8926 13323 3.304525 CGGCCGATAACTAGGTGTAAGAG 60.305 52.174 24.07 0.00 0.00 2.85
8927 13324 3.552478 GGCCGATAACTAGGTGTAAGAGC 60.552 52.174 0.00 0.00 0.00 4.09
8928 13325 3.067742 GCCGATAACTAGGTGTAAGAGCA 59.932 47.826 0.00 0.00 0.00 4.26
8929 13326 4.262079 GCCGATAACTAGGTGTAAGAGCAT 60.262 45.833 0.00 0.00 0.00 3.79
8930 13327 5.223382 CCGATAACTAGGTGTAAGAGCATG 58.777 45.833 0.00 0.00 0.00 4.06
8931 13328 5.223382 CGATAACTAGGTGTAAGAGCATGG 58.777 45.833 0.00 0.00 0.00 3.66
8932 13329 5.221263 CGATAACTAGGTGTAAGAGCATGGT 60.221 44.000 0.00 0.00 0.00 3.55
8933 13330 4.910458 AACTAGGTGTAAGAGCATGGTT 57.090 40.909 0.00 0.00 0.00 3.67
8934 13331 7.469594 CGATAACTAGGTGTAAGAGCATGGTTA 60.470 40.741 0.00 0.00 0.00 2.85
8935 13332 6.368779 AACTAGGTGTAAGAGCATGGTTAA 57.631 37.500 0.00 0.00 0.00 2.01
8936 13333 6.561519 ACTAGGTGTAAGAGCATGGTTAAT 57.438 37.500 0.00 0.00 0.00 1.40
8937 13334 7.670605 ACTAGGTGTAAGAGCATGGTTAATA 57.329 36.000 0.00 0.00 0.00 0.98
8938 13335 8.086143 ACTAGGTGTAAGAGCATGGTTAATAA 57.914 34.615 0.00 0.00 0.00 1.40
8939 13336 8.714906 ACTAGGTGTAAGAGCATGGTTAATAAT 58.285 33.333 0.00 0.00 0.00 1.28
8945 13342 9.667107 TGTAAGAGCATGGTTAATAATATAGCC 57.333 33.333 0.00 0.00 0.00 3.93
8946 13343 9.667107 GTAAGAGCATGGTTAATAATATAGCCA 57.333 33.333 0.00 0.00 39.96 4.75
8948 13345 8.567285 AGAGCATGGTTAATAATATAGCCAAC 57.433 34.615 0.00 0.00 39.25 3.77
8949 13346 8.163408 AGAGCATGGTTAATAATATAGCCAACA 58.837 33.333 0.00 0.00 39.25 3.33
8950 13347 8.704849 AGCATGGTTAATAATATAGCCAACAA 57.295 30.769 0.00 0.00 39.25 2.83
8951 13348 9.312904 AGCATGGTTAATAATATAGCCAACAAT 57.687 29.630 0.00 0.00 39.25 2.71
8952 13349 9.573133 GCATGGTTAATAATATAGCCAACAATC 57.427 33.333 0.00 0.00 39.25 2.67
8953 13350 9.773328 CATGGTTAATAATATAGCCAACAATCG 57.227 33.333 0.00 0.00 39.25 3.34
8954 13351 8.330466 TGGTTAATAATATAGCCAACAATCGG 57.670 34.615 0.00 0.00 33.79 4.18
8963 13360 2.846193 GCCAACAATCGGCTATAAGGA 58.154 47.619 0.00 0.00 46.56 3.36
8964 13361 2.808543 GCCAACAATCGGCTATAAGGAG 59.191 50.000 0.00 0.00 46.56 3.69
8965 13362 3.744530 GCCAACAATCGGCTATAAGGAGT 60.745 47.826 0.00 0.00 46.56 3.85
8966 13363 4.451900 CCAACAATCGGCTATAAGGAGTT 58.548 43.478 0.00 0.00 0.00 3.01
8967 13364 4.273480 CCAACAATCGGCTATAAGGAGTTG 59.727 45.833 0.00 0.00 35.03 3.16
8968 13365 3.467803 ACAATCGGCTATAAGGAGTTGC 58.532 45.455 0.00 0.00 0.00 4.17
8969 13366 2.808543 CAATCGGCTATAAGGAGTTGCC 59.191 50.000 0.00 0.00 40.14 4.52
8970 13367 1.491668 TCGGCTATAAGGAGTTGCCA 58.508 50.000 0.00 0.00 43.38 4.92
8971 13368 2.047061 TCGGCTATAAGGAGTTGCCAT 58.953 47.619 0.00 0.00 43.38 4.40
8972 13369 2.146342 CGGCTATAAGGAGTTGCCATG 58.854 52.381 0.00 0.00 43.38 3.66
8973 13370 2.485479 CGGCTATAAGGAGTTGCCATGT 60.485 50.000 0.00 0.00 43.38 3.21
8974 13371 3.142174 GGCTATAAGGAGTTGCCATGTC 58.858 50.000 0.00 0.00 42.79 3.06
8975 13372 3.433598 GGCTATAAGGAGTTGCCATGTCA 60.434 47.826 0.00 0.00 42.79 3.58
8976 13373 4.392940 GCTATAAGGAGTTGCCATGTCAT 58.607 43.478 0.00 0.00 40.02 3.06
8977 13374 4.453819 GCTATAAGGAGTTGCCATGTCATC 59.546 45.833 0.00 0.00 40.02 2.92
8978 13375 4.785346 ATAAGGAGTTGCCATGTCATCT 57.215 40.909 0.00 0.00 40.02 2.90
8979 13376 5.894298 ATAAGGAGTTGCCATGTCATCTA 57.106 39.130 0.00 0.00 40.02 1.98
8980 13377 4.785346 AAGGAGTTGCCATGTCATCTAT 57.215 40.909 0.00 0.00 40.02 1.98
8981 13378 5.894298 AAGGAGTTGCCATGTCATCTATA 57.106 39.130 0.00 0.00 40.02 1.31
8982 13379 5.480642 AGGAGTTGCCATGTCATCTATAG 57.519 43.478 0.00 0.00 40.02 1.31
8983 13380 3.999663 GGAGTTGCCATGTCATCTATAGC 59.000 47.826 0.00 0.00 36.34 2.97
8984 13381 3.999663 GAGTTGCCATGTCATCTATAGCC 59.000 47.826 0.00 0.00 0.00 3.93
8985 13382 3.392285 AGTTGCCATGTCATCTATAGCCA 59.608 43.478 0.00 0.00 0.00 4.75
8986 13383 4.136796 GTTGCCATGTCATCTATAGCCAA 58.863 43.478 0.00 0.00 0.00 4.52
8987 13384 3.743521 TGCCATGTCATCTATAGCCAAC 58.256 45.455 0.00 0.00 0.00 3.77
8988 13385 3.077359 GCCATGTCATCTATAGCCAACC 58.923 50.000 0.00 0.00 0.00 3.77
8989 13386 3.244700 GCCATGTCATCTATAGCCAACCT 60.245 47.826 0.00 0.00 0.00 3.50
8990 13387 4.747931 GCCATGTCATCTATAGCCAACCTT 60.748 45.833 0.00 0.00 0.00 3.50
8991 13388 4.758674 CCATGTCATCTATAGCCAACCTTG 59.241 45.833 0.00 0.00 0.00 3.61
8992 13389 5.371526 CATGTCATCTATAGCCAACCTTGT 58.628 41.667 0.00 0.00 0.00 3.16
8993 13390 6.464322 CCATGTCATCTATAGCCAACCTTGTA 60.464 42.308 0.00 0.00 0.00 2.41
8994 13391 6.161855 TGTCATCTATAGCCAACCTTGTAG 57.838 41.667 0.00 0.00 0.00 2.74
8995 13392 4.991687 GTCATCTATAGCCAACCTTGTAGC 59.008 45.833 0.00 0.00 0.00 3.58
8996 13393 4.040461 TCATCTATAGCCAACCTTGTAGCC 59.960 45.833 0.00 0.00 0.00 3.93
8997 13394 2.364324 TCTATAGCCAACCTTGTAGCCG 59.636 50.000 0.00 0.00 0.00 5.52
8998 13395 0.180406 ATAGCCAACCTTGTAGCCGG 59.820 55.000 0.00 0.00 0.00 6.13
8999 13396 2.530958 TAGCCAACCTTGTAGCCGGC 62.531 60.000 21.89 21.89 39.90 6.13
9000 13397 2.033448 CCAACCTTGTAGCCGGCA 59.967 61.111 31.54 12.31 0.00 5.69
9001 13398 1.378514 CCAACCTTGTAGCCGGCAT 60.379 57.895 31.54 16.46 0.00 4.40
9002 13399 1.656818 CCAACCTTGTAGCCGGCATG 61.657 60.000 31.54 12.93 0.00 4.06
9003 13400 0.960364 CAACCTTGTAGCCGGCATGT 60.960 55.000 31.54 11.17 0.00 3.21
9004 13401 0.616371 AACCTTGTAGCCGGCATGTA 59.384 50.000 31.54 9.92 0.00 2.29
9005 13402 0.837272 ACCTTGTAGCCGGCATGTAT 59.163 50.000 31.54 10.27 0.00 2.29
9006 13403 2.043992 ACCTTGTAGCCGGCATGTATA 58.956 47.619 31.54 9.03 0.00 1.47
9007 13404 2.436542 ACCTTGTAGCCGGCATGTATAA 59.563 45.455 31.54 15.57 0.00 0.98
9008 13405 3.072476 ACCTTGTAGCCGGCATGTATAAT 59.928 43.478 31.54 7.63 0.00 1.28
9009 13406 4.285003 ACCTTGTAGCCGGCATGTATAATA 59.715 41.667 31.54 6.42 0.00 0.98
9010 13407 4.870426 CCTTGTAGCCGGCATGTATAATAG 59.130 45.833 31.54 11.48 0.00 1.73
9011 13408 5.477607 TTGTAGCCGGCATGTATAATAGT 57.522 39.130 31.54 5.27 0.00 2.12
9012 13409 6.350696 CCTTGTAGCCGGCATGTATAATAGTA 60.351 42.308 31.54 4.10 0.00 1.82
9013 13410 6.593268 TGTAGCCGGCATGTATAATAGTAA 57.407 37.500 31.54 0.00 0.00 2.24
9014 13411 6.627243 TGTAGCCGGCATGTATAATAGTAAG 58.373 40.000 31.54 0.00 0.00 2.34
9015 13412 5.740290 AGCCGGCATGTATAATAGTAAGT 57.260 39.130 31.54 0.00 0.00 2.24
9016 13413 6.110411 AGCCGGCATGTATAATAGTAAGTT 57.890 37.500 31.54 0.00 0.00 2.66
9017 13414 6.531021 AGCCGGCATGTATAATAGTAAGTTT 58.469 36.000 31.54 0.00 0.00 2.66
9018 13415 6.996282 AGCCGGCATGTATAATAGTAAGTTTT 59.004 34.615 31.54 0.00 0.00 2.43
9019 13416 8.152246 AGCCGGCATGTATAATAGTAAGTTTTA 58.848 33.333 31.54 0.00 0.00 1.52
9020 13417 8.943002 GCCGGCATGTATAATAGTAAGTTTTAT 58.057 33.333 24.80 0.00 0.00 1.40
9048 13445 9.603921 TGTGTACTATTTTATTAGTAGTTGGCC 57.396 33.333 0.00 0.00 35.80 5.36
9049 13446 9.049523 GTGTACTATTTTATTAGTAGTTGGCCC 57.950 37.037 0.00 0.00 35.80 5.80
9050 13447 8.770322 TGTACTATTTTATTAGTAGTTGGCCCA 58.230 33.333 0.00 0.00 35.80 5.36
9051 13448 9.049523 GTACTATTTTATTAGTAGTTGGCCCAC 57.950 37.037 0.00 0.00 35.80 4.61
9052 13449 7.058525 ACTATTTTATTAGTAGTTGGCCCACC 58.941 38.462 2.72 0.00 30.65 4.61
9053 13450 5.523883 TTTTATTAGTAGTTGGCCCACCT 57.476 39.130 2.72 0.00 36.63 4.00
9054 13451 5.523883 TTTATTAGTAGTTGGCCCACCTT 57.476 39.130 2.72 0.00 36.63 3.50
9055 13452 6.639590 TTTATTAGTAGTTGGCCCACCTTA 57.360 37.500 2.72 0.00 36.63 2.69
9056 13453 3.986996 TTAGTAGTTGGCCCACCTTAC 57.013 47.619 2.72 0.87 36.63 2.34
9057 13454 1.737199 AGTAGTTGGCCCACCTTACA 58.263 50.000 2.72 0.00 36.63 2.41
9058 13455 2.059490 AGTAGTTGGCCCACCTTACAA 58.941 47.619 2.72 0.00 36.63 2.41
9059 13456 2.156917 GTAGTTGGCCCACCTTACAAC 58.843 52.381 2.72 0.00 42.51 3.32
9060 13457 0.178973 AGTTGGCCCACCTTACAACC 60.179 55.000 2.72 0.00 43.02 3.77
9061 13458 0.178973 GTTGGCCCACCTTACAACCT 60.179 55.000 0.00 0.00 37.75 3.50
9062 13459 0.111639 TTGGCCCACCTTACAACCTC 59.888 55.000 0.00 0.00 36.63 3.85
9063 13460 1.063070 TGGCCCACCTTACAACCTCA 61.063 55.000 0.00 0.00 36.63 3.86
9064 13461 0.608308 GGCCCACCTTACAACCTCAC 60.608 60.000 0.00 0.00 0.00 3.51
9065 13462 0.109723 GCCCACCTTACAACCTCACA 59.890 55.000 0.00 0.00 0.00 3.58
9066 13463 1.477923 GCCCACCTTACAACCTCACAA 60.478 52.381 0.00 0.00 0.00 3.33
9067 13464 2.938838 CCCACCTTACAACCTCACAAA 58.061 47.619 0.00 0.00 0.00 2.83
9068 13465 2.884639 CCCACCTTACAACCTCACAAAG 59.115 50.000 0.00 0.00 0.00 2.77
9069 13466 2.293399 CCACCTTACAACCTCACAAAGC 59.707 50.000 0.00 0.00 0.00 3.51
9070 13467 2.032030 CACCTTACAACCTCACAAAGCG 60.032 50.000 0.00 0.00 0.00 4.68
9071 13468 2.218603 CCTTACAACCTCACAAAGCGT 58.781 47.619 0.00 0.00 0.00 5.07
9072 13469 2.223377 CCTTACAACCTCACAAAGCGTC 59.777 50.000 0.00 0.00 0.00 5.19
9073 13470 1.873698 TACAACCTCACAAAGCGTCC 58.126 50.000 0.00 0.00 0.00 4.79
9074 13471 0.180406 ACAACCTCACAAAGCGTCCT 59.820 50.000 0.00 0.00 0.00 3.85
9075 13472 0.588252 CAACCTCACAAAGCGTCCTG 59.412 55.000 0.00 0.00 0.00 3.86
9076 13473 0.468226 AACCTCACAAAGCGTCCTGA 59.532 50.000 0.00 0.00 0.00 3.86
9077 13474 0.034059 ACCTCACAAAGCGTCCTGAG 59.966 55.000 1.05 1.05 0.00 3.35
9078 13475 0.671781 CCTCACAAAGCGTCCTGAGG 60.672 60.000 10.02 10.02 42.97 3.86
9079 13476 1.294659 CTCACAAAGCGTCCTGAGGC 61.295 60.000 3.73 3.73 42.05 4.70
9086 13483 3.753434 CGTCCTGAGGCTCGTGCT 61.753 66.667 10.42 0.00 39.59 4.40
9087 13484 2.407428 CGTCCTGAGGCTCGTGCTA 61.407 63.158 10.42 0.00 39.59 3.49
9088 13485 1.435515 GTCCTGAGGCTCGTGCTAG 59.564 63.158 10.42 0.67 39.59 3.42
9089 13486 1.032657 GTCCTGAGGCTCGTGCTAGA 61.033 60.000 10.42 0.00 39.59 2.43
9090 13487 0.749818 TCCTGAGGCTCGTGCTAGAG 60.750 60.000 10.42 0.00 41.03 2.43
9096 13493 3.522731 CTCGTGCTAGAGCCGGCT 61.523 66.667 33.48 33.48 41.18 5.52
9097 13494 2.124445 TCGTGCTAGAGCCGGCTA 60.124 61.111 32.97 14.96 41.18 3.93
9098 13495 2.026301 CGTGCTAGAGCCGGCTAC 59.974 66.667 32.97 22.68 41.18 3.58
9099 13496 2.482333 CGTGCTAGAGCCGGCTACT 61.482 63.158 32.97 27.98 41.18 2.57
9100 13497 1.164662 CGTGCTAGAGCCGGCTACTA 61.165 60.000 32.97 27.61 41.18 1.82
9101 13498 1.030457 GTGCTAGAGCCGGCTACTAA 58.970 55.000 32.97 14.86 41.18 2.24
9102 13499 1.030457 TGCTAGAGCCGGCTACTAAC 58.970 55.000 32.97 24.64 41.18 2.34
9103 13500 0.314618 GCTAGAGCCGGCTACTAACC 59.685 60.000 32.97 16.49 34.31 2.85
9104 13501 1.688772 CTAGAGCCGGCTACTAACCA 58.311 55.000 32.97 11.84 0.00 3.67
9105 13502 2.029623 CTAGAGCCGGCTACTAACCAA 58.970 52.381 32.97 11.48 0.00 3.67
9106 13503 0.824759 AGAGCCGGCTACTAACCAAG 59.175 55.000 32.97 0.00 0.00 3.61
9107 13504 0.822164 GAGCCGGCTACTAACCAAGA 59.178 55.000 32.97 0.00 0.00 3.02
9108 13505 0.824759 AGCCGGCTACTAACCAAGAG 59.175 55.000 31.86 0.00 0.00 2.85
9109 13506 0.810426 GCCGGCTACTAACCAAGAGC 60.810 60.000 22.15 0.00 0.00 4.09
9113 13510 1.657822 GCTACTAACCAAGAGCCTGC 58.342 55.000 0.00 0.00 0.00 4.85
9114 13511 1.208293 GCTACTAACCAAGAGCCTGCT 59.792 52.381 0.00 0.00 0.00 4.24
9115 13512 2.355209 GCTACTAACCAAGAGCCTGCTT 60.355 50.000 0.00 0.00 0.00 3.91
9116 13513 2.481289 ACTAACCAAGAGCCTGCTTC 57.519 50.000 0.00 0.00 0.00 3.86
9117 13514 1.981495 ACTAACCAAGAGCCTGCTTCT 59.019 47.619 0.00 0.00 0.00 2.85
9118 13515 2.027653 ACTAACCAAGAGCCTGCTTCTC 60.028 50.000 0.00 0.00 0.00 2.87
9119 13516 1.063183 AACCAAGAGCCTGCTTCTCT 58.937 50.000 0.00 0.00 42.31 3.10
9121 13518 1.003003 ACCAAGAGCCTGCTTCTCTTC 59.997 52.381 11.06 0.00 46.01 2.87
9122 13519 1.278699 CCAAGAGCCTGCTTCTCTTCT 59.721 52.381 11.06 0.00 46.01 2.85
9123 13520 2.620242 CAAGAGCCTGCTTCTCTTCTC 58.380 52.381 11.06 0.00 46.01 2.87
9124 13521 2.234414 CAAGAGCCTGCTTCTCTTCTCT 59.766 50.000 11.06 0.00 46.01 3.10
9125 13522 2.539302 AGAGCCTGCTTCTCTTCTCTT 58.461 47.619 0.00 0.00 37.63 2.85
9126 13523 2.905736 AGAGCCTGCTTCTCTTCTCTTT 59.094 45.455 0.00 0.00 37.63 2.52
9127 13524 3.055891 AGAGCCTGCTTCTCTTCTCTTTC 60.056 47.826 0.00 0.00 37.63 2.62
9128 13525 2.027285 AGCCTGCTTCTCTTCTCTTTCC 60.027 50.000 0.00 0.00 0.00 3.13
9129 13526 2.027285 GCCTGCTTCTCTTCTCTTTCCT 60.027 50.000 0.00 0.00 0.00 3.36
9130 13527 3.860641 CCTGCTTCTCTTCTCTTTCCTC 58.139 50.000 0.00 0.00 0.00 3.71
9131 13528 3.369366 CCTGCTTCTCTTCTCTTTCCTCC 60.369 52.174 0.00 0.00 0.00 4.30
9132 13529 3.242867 TGCTTCTCTTCTCTTTCCTCCA 58.757 45.455 0.00 0.00 0.00 3.86
9133 13530 3.648067 TGCTTCTCTTCTCTTTCCTCCAA 59.352 43.478 0.00 0.00 0.00 3.53
9134 13531 4.000325 GCTTCTCTTCTCTTTCCTCCAAC 59.000 47.826 0.00 0.00 0.00 3.77
9135 13532 4.262851 GCTTCTCTTCTCTTTCCTCCAACT 60.263 45.833 0.00 0.00 0.00 3.16
9136 13533 5.046950 GCTTCTCTTCTCTTTCCTCCAACTA 60.047 44.000 0.00 0.00 0.00 2.24
9137 13534 6.519213 GCTTCTCTTCTCTTTCCTCCAACTAA 60.519 42.308 0.00 0.00 0.00 2.24
9138 13535 6.597832 TCTCTTCTCTTTCCTCCAACTAAG 57.402 41.667 0.00 0.00 0.00 2.18
9139 13536 6.078664 TCTCTTCTCTTTCCTCCAACTAAGT 58.921 40.000 0.00 0.00 0.00 2.24
9140 13537 7.239438 TCTCTTCTCTTTCCTCCAACTAAGTA 58.761 38.462 0.00 0.00 0.00 2.24
9141 13538 7.728981 TCTCTTCTCTTTCCTCCAACTAAGTAA 59.271 37.037 0.00 0.00 0.00 2.24
9142 13539 8.258850 TCTTCTCTTTCCTCCAACTAAGTAAA 57.741 34.615 0.00 0.00 0.00 2.01
9143 13540 8.368668 TCTTCTCTTTCCTCCAACTAAGTAAAG 58.631 37.037 0.00 0.00 0.00 1.85
9144 13541 7.850935 TCTCTTTCCTCCAACTAAGTAAAGA 57.149 36.000 0.00 0.00 32.34 2.52
9145 13542 8.437274 TCTCTTTCCTCCAACTAAGTAAAGAT 57.563 34.615 0.00 0.00 32.73 2.40
9146 13543 9.543231 TCTCTTTCCTCCAACTAAGTAAAGATA 57.457 33.333 0.00 0.00 32.73 1.98
9182 13579 9.736414 AATTCTTATAGCATGCTTATGTCATCT 57.264 29.630 28.02 0.00 0.00 2.90
9183 13580 9.736414 ATTCTTATAGCATGCTTATGTCATCTT 57.264 29.630 28.02 0.00 0.00 2.40
9202 13599 9.145865 GTCATCTTATTATACTTGCTCTAAGGC 57.854 37.037 0.00 0.00 40.84 4.35
9203 13600 8.870116 TCATCTTATTATACTTGCTCTAAGGCA 58.130 33.333 0.00 0.00 40.84 4.75
9212 13609 4.568152 TTGCTCTAAGGCAAGTGTTTTC 57.432 40.909 0.00 0.00 45.64 2.29
9213 13610 3.820557 TGCTCTAAGGCAAGTGTTTTCT 58.179 40.909 0.00 0.00 39.43 2.52
9214 13611 4.968259 TGCTCTAAGGCAAGTGTTTTCTA 58.032 39.130 0.00 0.00 39.43 2.10
9215 13612 5.560724 TGCTCTAAGGCAAGTGTTTTCTAT 58.439 37.500 0.00 0.00 39.43 1.98
9216 13613 5.643777 TGCTCTAAGGCAAGTGTTTTCTATC 59.356 40.000 0.00 0.00 39.43 2.08
9217 13614 5.220491 GCTCTAAGGCAAGTGTTTTCTATCG 60.220 44.000 0.00 0.00 0.00 2.92
9218 13615 5.175859 TCTAAGGCAAGTGTTTTCTATCGG 58.824 41.667 0.00 0.00 0.00 4.18
9219 13616 2.711542 AGGCAAGTGTTTTCTATCGGG 58.288 47.619 0.00 0.00 0.00 5.14
9220 13617 2.039879 AGGCAAGTGTTTTCTATCGGGT 59.960 45.455 0.00 0.00 0.00 5.28
9221 13618 2.817844 GGCAAGTGTTTTCTATCGGGTT 59.182 45.455 0.00 0.00 0.00 4.11
9222 13619 3.119955 GGCAAGTGTTTTCTATCGGGTTC 60.120 47.826 0.00 0.00 0.00 3.62
9223 13620 3.751698 GCAAGTGTTTTCTATCGGGTTCT 59.248 43.478 0.00 0.00 0.00 3.01
9224 13621 4.378459 GCAAGTGTTTTCTATCGGGTTCTG 60.378 45.833 0.00 0.00 0.00 3.02
9225 13622 3.939066 AGTGTTTTCTATCGGGTTCTGG 58.061 45.455 0.00 0.00 0.00 3.86
9226 13623 3.007635 GTGTTTTCTATCGGGTTCTGGG 58.992 50.000 0.00 0.00 0.00 4.45
9227 13624 2.014857 GTTTTCTATCGGGTTCTGGGC 58.985 52.381 0.00 0.00 0.00 5.36
9228 13625 1.580059 TTTCTATCGGGTTCTGGGCT 58.420 50.000 0.00 0.00 0.00 5.19
9229 13626 1.580059 TTCTATCGGGTTCTGGGCTT 58.420 50.000 0.00 0.00 0.00 4.35
9230 13627 2.464796 TCTATCGGGTTCTGGGCTTA 57.535 50.000 0.00 0.00 0.00 3.09
9231 13628 2.037144 TCTATCGGGTTCTGGGCTTAC 58.963 52.381 0.00 0.00 0.00 2.34
9232 13629 1.070289 CTATCGGGTTCTGGGCTTACC 59.930 57.143 0.00 0.00 40.81 2.85
9233 13630 1.968050 ATCGGGTTCTGGGCTTACCG 61.968 60.000 0.00 0.00 44.64 4.02
9234 13631 2.951101 CGGGTTCTGGGCTTACCGT 61.951 63.158 0.00 0.00 44.64 4.83
9235 13632 1.606885 CGGGTTCTGGGCTTACCGTA 61.607 60.000 0.00 0.00 44.64 4.02
9236 13633 0.614812 GGGTTCTGGGCTTACCGTAA 59.385 55.000 0.00 0.00 44.64 3.18
9237 13634 1.211212 GGGTTCTGGGCTTACCGTAAT 59.789 52.381 0.00 0.00 44.64 1.89
9238 13635 2.356432 GGGTTCTGGGCTTACCGTAATT 60.356 50.000 0.00 0.00 44.64 1.40
9239 13636 3.118298 GGGTTCTGGGCTTACCGTAATTA 60.118 47.826 0.00 0.00 44.64 1.40
9240 13637 4.516323 GGTTCTGGGCTTACCGTAATTAA 58.484 43.478 0.00 0.00 44.64 1.40
9241 13638 4.573607 GGTTCTGGGCTTACCGTAATTAAG 59.426 45.833 0.00 0.00 44.64 1.85
9247 13644 3.538591 GCTTACCGTAATTAAGCTGGGT 58.461 45.455 6.82 1.95 45.40 4.51
9248 13645 3.311596 GCTTACCGTAATTAAGCTGGGTG 59.688 47.826 6.82 0.00 45.40 4.61
9249 13646 4.510571 CTTACCGTAATTAAGCTGGGTGT 58.489 43.478 0.00 0.00 0.00 4.16
9250 13647 5.663456 CTTACCGTAATTAAGCTGGGTGTA 58.337 41.667 0.00 0.00 0.00 2.90
9251 13648 4.556592 ACCGTAATTAAGCTGGGTGTAA 57.443 40.909 0.00 0.00 0.00 2.41
9252 13649 4.909001 ACCGTAATTAAGCTGGGTGTAAA 58.091 39.130 0.00 0.00 0.00 2.01
9253 13650 4.939439 ACCGTAATTAAGCTGGGTGTAAAG 59.061 41.667 0.00 0.00 0.00 1.85
9254 13651 4.201881 CCGTAATTAAGCTGGGTGTAAAGC 60.202 45.833 0.00 0.00 39.82 3.51
9255 13652 4.393680 CGTAATTAAGCTGGGTGTAAAGCA 59.606 41.667 0.00 0.00 42.06 3.91
9256 13653 4.783764 AATTAAGCTGGGTGTAAAGCAC 57.216 40.909 0.00 0.00 46.97 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 6.889301 TCATTTTCATGGAGAGCATTATCC 57.111 37.500 0.00 0.00 36.05 2.59
91 92 0.320771 TCGTTCCAAAGCAGAGGAGC 60.321 55.000 0.00 0.00 34.91 4.70
92 93 1.719600 CTCGTTCCAAAGCAGAGGAG 58.280 55.000 0.00 0.00 34.91 3.69
301 2074 4.635765 GTCAGATTGGAATCGTGGATTTCA 59.364 41.667 0.00 0.00 40.35 2.69
382 2155 0.320073 TTTGATGTGACGACGGGGTC 60.320 55.000 0.00 1.58 37.45 4.46
383 2156 0.323629 ATTTGATGTGACGACGGGGT 59.676 50.000 0.00 0.00 0.00 4.95
384 2157 1.130373 CAATTTGATGTGACGACGGGG 59.870 52.381 0.00 0.00 0.00 5.73
385 2158 1.465689 GCAATTTGATGTGACGACGGG 60.466 52.381 0.00 0.00 0.00 5.28
386 2159 1.465689 GGCAATTTGATGTGACGACGG 60.466 52.381 0.00 0.00 0.00 4.79
387 2160 1.465689 GGGCAATTTGATGTGACGACG 60.466 52.381 0.00 0.00 0.00 5.12
519 2434 3.049227 CGAGACGGATGATGCAACA 57.951 52.632 0.00 0.00 0.00 3.33
536 2451 2.409870 GGAGCCAGAACATTGCCCG 61.410 63.158 0.00 0.00 0.00 6.13
537 2452 2.054453 GGGAGCCAGAACATTGCCC 61.054 63.158 0.00 0.00 0.00 5.36
551 2466 1.750399 CCAAACATGCGGAGGGGAG 60.750 63.158 0.00 0.00 0.00 4.30
733 3442 1.071814 TTTTTGGTCGGGGAGTCGG 59.928 57.895 0.00 0.00 0.00 4.79
757 3466 7.940850 AGTGCAATTGTATACTTGTCTGTTTT 58.059 30.769 7.40 0.00 0.00 2.43
761 3477 5.643348 TGGAGTGCAATTGTATACTTGTCTG 59.357 40.000 7.40 0.00 0.00 3.51
762 3478 5.804639 TGGAGTGCAATTGTATACTTGTCT 58.195 37.500 7.40 4.87 0.00 3.41
781 3497 5.116983 GCAAACATGACGTTTTTACATGGAG 59.883 40.000 15.93 8.11 45.79 3.86
782 3498 4.979197 GCAAACATGACGTTTTTACATGGA 59.021 37.500 15.93 0.00 45.79 3.41
786 3502 4.096532 TGAGGCAAACATGACGTTTTTACA 59.903 37.500 0.00 0.00 45.79 2.41
790 3506 2.687935 AGTGAGGCAAACATGACGTTTT 59.312 40.909 0.00 0.00 45.79 2.43
887 4341 0.929824 CGAAGGCACGCACAAAAGTG 60.930 55.000 0.00 0.00 41.01 3.16
888 4342 1.092921 TCGAAGGCACGCACAAAAGT 61.093 50.000 0.00 0.00 0.00 2.66
889 4343 0.384725 CTCGAAGGCACGCACAAAAG 60.385 55.000 0.00 0.00 0.00 2.27
890 4344 1.092921 ACTCGAAGGCACGCACAAAA 61.093 50.000 0.00 0.00 0.00 2.44
906 4363 6.282199 TGAATTTATAGCCGGATAGGACTC 57.718 41.667 5.05 0.00 45.00 3.36
930 4391 2.093075 TCTGTCGTTGGTTGTTGGGTAA 60.093 45.455 0.00 0.00 0.00 2.85
1094 4572 1.202817 TGAATGCATGCATGTGTGGAC 59.797 47.619 32.79 17.29 36.68 4.02
1409 4925 8.902806 TGCCTTAGACAGACCAATTAAATTATG 58.097 33.333 0.00 0.00 0.00 1.90
1449 4965 5.643777 GTCACTTAGATGTGCAATAACCAGT 59.356 40.000 0.00 0.00 37.81 4.00
1450 4966 5.877012 AGTCACTTAGATGTGCAATAACCAG 59.123 40.000 0.00 0.00 37.81 4.00
1452 4968 5.874810 TGAGTCACTTAGATGTGCAATAACC 59.125 40.000 0.00 0.00 37.81 2.85
1503 5029 5.351233 TTTACGTGAAGATTCGTGCAAAT 57.649 34.783 0.00 0.00 40.50 2.32
1545 5134 4.345837 CCCGTGTATTTCCCCTTACTATCA 59.654 45.833 0.00 0.00 0.00 2.15
1566 5155 4.416738 GAGCACCCAGGCACTCCC 62.417 72.222 0.00 0.00 34.60 4.30
2151 5746 0.814010 CTATCCGAAAAGGGTGGGCG 60.814 60.000 0.00 0.00 41.52 6.13
2155 5750 4.120589 GAGCTTACTATCCGAAAAGGGTG 58.879 47.826 0.00 0.00 41.52 4.61
2157 5752 3.388350 AGGAGCTTACTATCCGAAAAGGG 59.612 47.826 0.00 0.00 40.73 3.95
2503 6106 8.706035 CAGAAGATGTTCATGGATTTTTCAAAC 58.294 33.333 5.28 0.00 34.82 2.93
2595 6198 2.759973 CGCCTCCCTGCTCCACTA 60.760 66.667 0.00 0.00 0.00 2.74
2615 6221 1.000283 CAAACCTCTCGCTCACTCTGT 60.000 52.381 0.00 0.00 0.00 3.41
2616 6222 1.000283 ACAAACCTCTCGCTCACTCTG 60.000 52.381 0.00 0.00 0.00 3.35
2617 6223 1.000283 CACAAACCTCTCGCTCACTCT 60.000 52.381 0.00 0.00 0.00 3.24
2640 6246 4.216042 TGTTGTAACATTCACATGAGCCAG 59.784 41.667 0.00 0.00 33.17 4.85
2652 6258 6.825610 ACCATGGAATTGTTGTTGTAACATT 58.174 32.000 21.47 0.00 38.95 2.71
2683 6294 4.767908 TCCCTTGGGAGCTCATATTCTAT 58.232 43.478 17.19 0.00 0.00 1.98
2760 6371 1.006043 TGGAGTTGTTTGTTGGGGTCA 59.994 47.619 0.00 0.00 0.00 4.02
2761 6372 1.407618 GTGGAGTTGTTTGTTGGGGTC 59.592 52.381 0.00 0.00 0.00 4.46
2762 6373 1.006639 AGTGGAGTTGTTTGTTGGGGT 59.993 47.619 0.00 0.00 0.00 4.95
2765 6376 2.618709 GGAGAGTGGAGTTGTTTGTTGG 59.381 50.000 0.00 0.00 0.00 3.77
2802 6413 2.218037 CTGCGGTGCTGCTAGAGACA 62.218 60.000 0.00 0.00 35.36 3.41
2818 6429 7.951565 GTGTTTTTCATTTGTATATTGTGCTGC 59.048 33.333 0.00 0.00 0.00 5.25
2923 6538 6.986817 CGTTATTCACTCATGGGATTAAGTCT 59.013 38.462 0.00 0.00 0.00 3.24
3001 6616 2.843730 TGCACTAGGAGGCTCCAAATTA 59.156 45.455 33.86 17.00 39.61 1.40
3017 6632 0.759436 CCCTACTACCCCGATGCACT 60.759 60.000 0.00 0.00 0.00 4.40
3071 6686 3.844562 AAAACCCGGCTGGCCCAAT 62.845 57.895 5.85 0.00 37.83 3.16
3123 6738 8.438676 TTTTTGGTTGAAACACAAAAAGAAGA 57.561 26.923 19.79 8.06 40.23 2.87
3172 6787 8.990163 AACACAAAGAGGAAAAGGATAAAGTA 57.010 30.769 0.00 0.00 0.00 2.24
3173 6788 7.898014 AACACAAAGAGGAAAAGGATAAAGT 57.102 32.000 0.00 0.00 0.00 2.66
3252 6867 8.355088 GTGTTTTTGAAATTTTCGCAACTTTTC 58.645 29.630 14.18 0.00 0.00 2.29
3485 7120 9.180678 AGTTCATTAAAGCAAAATAAGTTCACG 57.819 29.630 0.00 0.00 0.00 4.35
3548 7183 2.281761 CTGCCGCTCCACTGGTTT 60.282 61.111 0.00 0.00 0.00 3.27
3609 7244 1.128200 TAACGCTCATATGGGCTGGT 58.872 50.000 24.69 18.41 0.00 4.00
3635 7270 0.028770 ACGTTGTGACCGTGCAATTG 59.971 50.000 0.00 0.00 37.12 2.32
3673 7308 2.203153 ACGGTGGTGGTTGTGAGC 60.203 61.111 0.00 0.00 0.00 4.26
3685 7320 3.345808 CCTTGGCGTCACACGGTG 61.346 66.667 6.58 6.58 42.82 4.94
3843 7478 4.555348 TTGTGGTCGGTTTTTATGTCAC 57.445 40.909 0.00 0.00 0.00 3.67
3909 7592 3.422303 GCATGCTTCGCCGTGTCA 61.422 61.111 11.37 0.00 0.00 3.58
3915 7598 1.008079 GGCTAATGCATGCTTCGCC 60.008 57.895 20.33 21.66 41.91 5.54
3951 7639 7.008266 CGAGCATGTCACATGGTTAATTTTTAC 59.992 37.037 23.02 6.68 0.00 2.01
3982 7676 3.890147 CTGGGCGTCTCTTAGTTATAGGT 59.110 47.826 0.00 0.00 0.00 3.08
4516 8347 3.966543 AAGGTGTTGGCCTCCCCG 61.967 66.667 3.32 0.00 38.03 5.73
4985 8823 2.358247 CACAAACGCCGCCTACCT 60.358 61.111 0.00 0.00 0.00 3.08
4997 8835 1.000884 GACACGACACCGAACACAAA 58.999 50.000 0.00 0.00 39.50 2.83
5146 9004 2.660802 CCAAGCGTACCTTCCCGT 59.339 61.111 0.00 0.00 0.00 5.28
5187 9069 2.053277 GGAGAGGGACCTCACGACC 61.053 68.421 19.79 12.85 44.99 4.79
5188 9070 1.000646 AGGAGAGGGACCTCACGAC 60.001 63.158 19.79 7.20 44.99 4.34
5189 9071 3.509290 AGGAGAGGGACCTCACGA 58.491 61.111 19.79 0.00 44.99 4.35
5194 9076 2.043450 CTGCGAGGAGAGGGACCT 60.043 66.667 0.00 0.00 40.80 3.85
5195 9077 2.569218 TACCTGCGAGGAGAGGGACC 62.569 65.000 8.91 0.00 37.67 4.46
5196 9078 1.076923 TACCTGCGAGGAGAGGGAC 60.077 63.158 8.91 0.00 37.67 4.46
5197 9079 1.076923 GTACCTGCGAGGAGAGGGA 60.077 63.158 8.91 0.00 37.67 4.20
5198 9080 2.482333 CGTACCTGCGAGGAGAGGG 61.482 68.421 8.91 0.00 37.67 4.30
5199 9081 2.482333 CCGTACCTGCGAGGAGAGG 61.482 68.421 8.91 0.00 37.67 3.69
5200 9082 1.749638 ACCGTACCTGCGAGGAGAG 60.750 63.158 8.91 0.74 37.67 3.20
5201 9083 2.044555 CACCGTACCTGCGAGGAGA 61.045 63.158 8.91 0.00 37.67 3.71
5202 9084 2.490217 CACCGTACCTGCGAGGAG 59.510 66.667 8.91 0.00 37.67 3.69
5203 9085 3.066190 CCACCGTACCTGCGAGGA 61.066 66.667 8.91 0.00 37.67 3.71
5204 9086 3.066190 TCCACCGTACCTGCGAGG 61.066 66.667 0.00 1.16 42.49 4.63
5205 9087 2.181021 GTCCACCGTACCTGCGAG 59.819 66.667 0.00 0.00 0.00 5.03
5206 9088 3.740397 CGTCCACCGTACCTGCGA 61.740 66.667 0.00 0.00 0.00 5.10
5320 9202 2.119495 GGTGACCCTACTCCATGATGT 58.881 52.381 0.00 0.00 0.00 3.06
5350 9233 1.760875 GGATCTCCAGCCGTACCCA 60.761 63.158 0.00 0.00 35.64 4.51
5560 9444 4.511246 CCGCCACCATGATGCCCT 62.511 66.667 0.00 0.00 0.00 5.19
5664 9549 1.212935 CTTCCAGATCCGGATTGGGTT 59.787 52.381 29.61 8.90 38.76 4.11
5665 9550 0.839946 CTTCCAGATCCGGATTGGGT 59.160 55.000 29.61 9.57 38.76 4.51
5803 9691 3.248171 GCGCCATGACGACGTCTC 61.248 66.667 26.86 10.63 33.15 3.36
5829 9717 1.701031 TTCAGCCAGAACCCGGACAA 61.701 55.000 0.73 0.00 0.00 3.18
5926 9816 1.269621 CGCGCTAAGCCCTATAACACT 60.270 52.381 5.56 0.00 44.76 3.55
5949 9839 9.853177 ATAAAGTACAGGATAAGCTAAAGCAAT 57.147 29.630 4.54 0.00 45.16 3.56
5980 9891 2.486982 AGAACACACACGACTACGCTAT 59.513 45.455 0.00 0.00 43.96 2.97
6027 9945 2.123468 GTGGCCCCCAAACACTGT 60.123 61.111 0.00 0.00 34.18 3.55
6089 10007 2.873472 CGCCCCGCTTTATATGTAAACA 59.127 45.455 0.00 0.00 0.00 2.83
6090 10008 2.224784 CCGCCCCGCTTTATATGTAAAC 59.775 50.000 0.00 0.00 0.00 2.01
6095 10013 1.156736 CTTCCGCCCCGCTTTATATG 58.843 55.000 0.00 0.00 0.00 1.78
6133 10051 7.958053 AATGGACCATTTTTGTTGGGACAATAC 60.958 37.037 14.28 0.00 44.71 1.89
6644 10616 1.723870 CTAGGCTTTGGTGCGATGC 59.276 57.895 0.00 0.00 0.00 3.91
6876 10850 1.965930 ATGGCGCTGCGAAGTTTCA 60.966 52.632 28.07 12.79 0.00 2.69
6909 10883 4.849329 CTACCACGAGGCCGACGC 62.849 72.222 21.41 2.02 39.06 5.19
6919 10893 1.135199 AGCGGTGTTACATCTACCACG 60.135 52.381 0.00 0.00 34.10 4.94
7026 11000 3.354467 CCTAGATATGGGTCTACCGGAC 58.646 54.545 9.46 0.00 44.64 4.79
7054 11028 1.203928 CTCGATCAGGATGTTCACGC 58.796 55.000 0.00 0.00 34.53 5.34
7213 11188 4.625800 GTCTTCATGGCGAGGCTT 57.374 55.556 0.00 0.00 0.00 4.35
7393 11368 1.381191 TGCTAGCTCCCATGGTCGA 60.381 57.895 17.23 0.20 0.00 4.20
7652 11632 2.123683 CAGAGAGCCCCCTAGCGA 60.124 66.667 0.00 0.00 38.01 4.93
7653 11633 3.230245 CCAGAGAGCCCCCTAGCG 61.230 72.222 0.00 0.00 38.01 4.26
7654 11634 1.152139 ATCCAGAGAGCCCCCTAGC 60.152 63.158 0.00 0.00 0.00 3.42
7655 11635 0.105246 ACATCCAGAGAGCCCCCTAG 60.105 60.000 0.00 0.00 0.00 3.02
7656 11636 0.343372 AACATCCAGAGAGCCCCCTA 59.657 55.000 0.00 0.00 0.00 3.53
7657 11637 1.083706 AACATCCAGAGAGCCCCCT 59.916 57.895 0.00 0.00 0.00 4.79
7658 11638 1.225704 CAACATCCAGAGAGCCCCC 59.774 63.158 0.00 0.00 0.00 5.40
7659 11639 1.134371 GTACAACATCCAGAGAGCCCC 60.134 57.143 0.00 0.00 0.00 5.80
7674 11654 3.736213 CGTCTAAGCGTCGTAAGTACAA 58.264 45.455 0.00 0.00 39.48 2.41
7850 11862 1.640917 TAAGAGCAACTCCCTCCGTT 58.359 50.000 0.00 0.00 0.00 4.44
7911 11928 4.082679 ACCGACAGTCTCTGAATCTTGTAC 60.083 45.833 3.70 0.00 35.18 2.90
8075 12423 4.979943 TCTGTGCAATCAACACAAGAAA 57.020 36.364 0.00 0.00 46.71 2.52
8154 12504 3.214250 GAGGCTATCTCCACCGGCG 62.214 68.421 0.00 0.00 36.52 6.46
8388 12742 4.183865 TGCTATCTCGTGACATTTCTTGG 58.816 43.478 0.00 0.00 0.00 3.61
8527 12881 1.741706 TGTTCGCGGGTAACTAGAGAG 59.258 52.381 6.13 0.00 0.00 3.20
8528 12882 1.825090 TGTTCGCGGGTAACTAGAGA 58.175 50.000 6.13 0.00 0.00 3.10
8583 12938 5.724223 GCTTTCGTCGTGGAAAAGCTTATAG 60.724 44.000 17.27 0.00 35.64 1.31
8612 12984 2.545742 CCCTTTCAAGTTTTCAAGCGGG 60.546 50.000 0.00 0.00 0.00 6.13
8614 12986 3.181491 TGACCCTTTCAAGTTTTCAAGCG 60.181 43.478 0.00 0.00 0.00 4.68
8615 12987 4.385358 TGACCCTTTCAAGTTTTCAAGC 57.615 40.909 0.00 0.00 0.00 4.01
8672 13046 6.127423 GCTGACTTAATGACCTAGAGTAACCA 60.127 42.308 0.00 0.00 0.00 3.67
8673 13047 6.127423 TGCTGACTTAATGACCTAGAGTAACC 60.127 42.308 0.00 0.00 0.00 2.85
8674 13048 6.752815 GTGCTGACTTAATGACCTAGAGTAAC 59.247 42.308 0.00 0.00 0.00 2.50
8691 13070 1.810606 CTGACTCACCGGTGCTGACT 61.811 60.000 30.25 9.27 0.00 3.41
8692 13071 1.373497 CTGACTCACCGGTGCTGAC 60.373 63.158 30.25 22.46 0.00 3.51
8694 13073 2.740055 GCTGACTCACCGGTGCTG 60.740 66.667 30.25 24.68 0.00 4.41
8696 13075 4.314440 TGGCTGACTCACCGGTGC 62.314 66.667 30.25 16.80 0.00 5.01
8697 13076 2.047844 CTGGCTGACTCACCGGTG 60.048 66.667 29.26 29.26 0.00 4.94
8698 13077 4.008933 GCTGGCTGACTCACCGGT 62.009 66.667 0.00 0.00 34.58 5.28
8699 13078 3.947132 CTGCTGGCTGACTCACCGG 62.947 68.421 0.00 0.00 35.26 5.28
8741 13126 2.364842 AGGTGCTCGGATCAGGCT 60.365 61.111 0.00 0.00 0.00 4.58
8742 13127 2.202987 CAGGTGCTCGGATCAGGC 60.203 66.667 0.00 0.00 0.00 4.85
8743 13128 1.039785 TCTCAGGTGCTCGGATCAGG 61.040 60.000 0.00 0.00 0.00 3.86
8745 13130 0.820226 CTTCTCAGGTGCTCGGATCA 59.180 55.000 0.00 0.00 0.00 2.92
8746 13131 0.529555 GCTTCTCAGGTGCTCGGATC 60.530 60.000 0.00 0.00 0.00 3.36
8748 13133 2.650116 GGCTTCTCAGGTGCTCGGA 61.650 63.158 0.00 0.00 0.00 4.55
8749 13134 2.125350 GGCTTCTCAGGTGCTCGG 60.125 66.667 0.00 0.00 0.00 4.63
8776 13173 4.430765 CTTGGTCGACGTCCCGGG 62.431 72.222 16.85 16.85 0.00 5.73
8780 13177 1.069378 CGCTTACTTGGTCGACGTCC 61.069 60.000 10.58 4.02 0.00 4.79
8792 13189 0.324460 AGGCTGGGTACTCGCTTACT 60.324 55.000 8.98 0.00 0.00 2.24
8793 13190 1.066757 GTAGGCTGGGTACTCGCTTAC 59.933 57.143 13.12 13.12 32.13 2.34
8794 13191 1.064166 AGTAGGCTGGGTACTCGCTTA 60.064 52.381 0.00 3.98 0.00 3.09
8795 13192 0.324460 AGTAGGCTGGGTACTCGCTT 60.324 55.000 0.00 4.84 0.00 4.68
8796 13193 0.752376 GAGTAGGCTGGGTACTCGCT 60.752 60.000 0.00 0.20 37.68 4.93
8797 13194 1.734748 GAGTAGGCTGGGTACTCGC 59.265 63.158 0.00 1.54 37.68 5.03
8799 13196 2.416901 CCGAGTAGGCTGGGTACTC 58.583 63.158 0.00 0.53 42.04 2.59
8800 13197 4.680487 CCGAGTAGGCTGGGTACT 57.320 61.111 0.00 0.00 36.07 2.73
8817 13214 1.762708 TGCATAGTTTGGGCCTTAGC 58.237 50.000 4.53 0.00 38.76 3.09
8818 13215 3.356290 ACTTGCATAGTTTGGGCCTTAG 58.644 45.455 4.53 0.00 31.29 2.18
8819 13216 3.352648 GACTTGCATAGTTTGGGCCTTA 58.647 45.455 4.53 0.00 37.17 2.69
8820 13217 2.171003 GACTTGCATAGTTTGGGCCTT 58.829 47.619 4.53 0.00 37.17 4.35
8821 13218 1.839424 GACTTGCATAGTTTGGGCCT 58.161 50.000 4.53 0.00 37.17 5.19
8822 13219 0.451783 CGACTTGCATAGTTTGGGCC 59.548 55.000 0.00 0.00 37.17 5.80
8823 13220 1.398390 CTCGACTTGCATAGTTTGGGC 59.602 52.381 0.00 0.00 37.17 5.36
8824 13221 2.416547 CACTCGACTTGCATAGTTTGGG 59.583 50.000 0.00 0.00 37.17 4.12
8825 13222 3.067106 ACACTCGACTTGCATAGTTTGG 58.933 45.455 0.00 0.00 37.17 3.28
8826 13223 4.732285 AACACTCGACTTGCATAGTTTG 57.268 40.909 0.00 0.00 37.17 2.93
8827 13224 5.176958 GTGTAACACTCGACTTGCATAGTTT 59.823 40.000 0.00 0.00 34.82 2.66
8828 13225 4.684703 GTGTAACACTCGACTTGCATAGTT 59.315 41.667 0.00 0.00 34.82 2.24
8829 13226 4.022242 AGTGTAACACTCGACTTGCATAGT 60.022 41.667 0.00 0.00 41.21 2.12
8830 13227 4.486090 AGTGTAACACTCGACTTGCATAG 58.514 43.478 0.00 0.00 41.21 2.23
8831 13228 4.514781 AGTGTAACACTCGACTTGCATA 57.485 40.909 0.00 0.00 41.21 3.14
8832 13229 3.386768 AGTGTAACACTCGACTTGCAT 57.613 42.857 0.00 0.00 41.21 3.96
8833 13230 2.882927 AGTGTAACACTCGACTTGCA 57.117 45.000 0.00 0.00 41.21 4.08
8842 13239 2.555757 GGTGTAGACCGAGTGTAACACT 59.444 50.000 0.00 0.00 40.89 3.55
8843 13240 2.352127 GGGTGTAGACCGAGTGTAACAC 60.352 54.545 2.45 0.00 44.23 3.32
8844 13241 1.888512 GGGTGTAGACCGAGTGTAACA 59.111 52.381 2.45 0.00 44.23 2.41
8845 13242 2.643933 GGGTGTAGACCGAGTGTAAC 57.356 55.000 2.45 0.00 44.23 2.50
8854 13251 1.394266 TTATCGGCCGGGTGTAGACC 61.394 60.000 27.83 0.00 42.27 3.85
8855 13252 0.249197 GTTATCGGCCGGGTGTAGAC 60.249 60.000 27.83 10.79 0.00 2.59
8856 13253 0.396139 AGTTATCGGCCGGGTGTAGA 60.396 55.000 27.83 3.54 0.00 2.59
8857 13254 0.249322 CAGTTATCGGCCGGGTGTAG 60.249 60.000 27.83 8.26 0.00 2.74
8858 13255 1.817881 CAGTTATCGGCCGGGTGTA 59.182 57.895 27.83 5.39 0.00 2.90
8859 13256 2.582436 CAGTTATCGGCCGGGTGT 59.418 61.111 27.83 11.80 0.00 4.16
8860 13257 2.895372 GCAGTTATCGGCCGGGTG 60.895 66.667 27.83 16.08 0.00 4.61
8861 13258 4.524318 CGCAGTTATCGGCCGGGT 62.524 66.667 27.83 17.24 0.00 5.28
8862 13259 4.524318 ACGCAGTTATCGGCCGGG 62.524 66.667 27.83 6.15 37.78 5.73
8863 13260 3.261951 CACGCAGTTATCGGCCGG 61.262 66.667 27.83 9.14 41.61 6.13
8864 13261 3.925238 GCACGCAGTTATCGGCCG 61.925 66.667 22.12 22.12 41.61 6.13
8865 13262 3.925238 CGCACGCAGTTATCGGCC 61.925 66.667 0.00 0.00 41.61 6.13
8866 13263 4.575245 GCGCACGCAGTTATCGGC 62.575 66.667 10.65 0.00 41.61 5.54
8867 13264 1.143373 TAAGCGCACGCAGTTATCGG 61.143 55.000 18.24 0.00 41.61 4.18
8868 13265 0.044161 GTAAGCGCACGCAGTTATCG 60.044 55.000 18.24 0.00 41.61 2.92
8869 13266 0.996462 TGTAAGCGCACGCAGTTATC 59.004 50.000 18.24 4.34 41.61 1.75
8870 13267 0.719465 GTGTAAGCGCACGCAGTTAT 59.281 50.000 18.24 0.55 41.61 1.89
8871 13268 0.319211 AGTGTAAGCGCACGCAGTTA 60.319 50.000 18.24 5.25 41.61 2.24
8872 13269 1.557443 GAGTGTAAGCGCACGCAGTT 61.557 55.000 18.24 6.28 41.61 3.16
8873 13270 2.693250 TGAGTGTAAGCGCACGCAGT 62.693 55.000 18.24 7.71 42.53 4.40
8874 13271 2.021584 TGAGTGTAAGCGCACGCAG 61.022 57.895 18.24 0.00 42.53 5.18
8875 13272 2.028337 TGAGTGTAAGCGCACGCA 59.972 55.556 18.24 3.66 44.51 5.24
8876 13273 2.470286 GTGAGTGTAAGCGCACGC 59.530 61.111 11.47 6.99 43.61 5.34
8881 13278 1.989864 TGTATTGCGTGAGTGTAAGCG 59.010 47.619 0.00 0.00 0.00 4.68
8882 13279 2.093783 GGTGTATTGCGTGAGTGTAAGC 59.906 50.000 0.00 0.00 0.00 3.09
8883 13280 2.671396 GGGTGTATTGCGTGAGTGTAAG 59.329 50.000 0.00 0.00 0.00 2.34
8884 13281 2.690786 GGGTGTATTGCGTGAGTGTAA 58.309 47.619 0.00 0.00 0.00 2.41
8885 13282 1.403116 CGGGTGTATTGCGTGAGTGTA 60.403 52.381 0.00 0.00 0.00 2.90
8886 13283 0.669318 CGGGTGTATTGCGTGAGTGT 60.669 55.000 0.00 0.00 0.00 3.55
8887 13284 1.358725 CCGGGTGTATTGCGTGAGTG 61.359 60.000 0.00 0.00 0.00 3.51
8888 13285 1.079405 CCGGGTGTATTGCGTGAGT 60.079 57.895 0.00 0.00 0.00 3.41
8889 13286 2.461110 GCCGGGTGTATTGCGTGAG 61.461 63.158 2.18 0.00 0.00 3.51
8890 13287 2.435234 GCCGGGTGTATTGCGTGA 60.435 61.111 2.18 0.00 0.00 4.35
8891 13288 3.505184 GGCCGGGTGTATTGCGTG 61.505 66.667 2.18 0.00 0.00 5.34
8893 13290 2.702751 TATCGGCCGGGTGTATTGCG 62.703 60.000 27.83 0.00 0.00 4.85
8894 13291 0.533308 TTATCGGCCGGGTGTATTGC 60.533 55.000 27.83 0.00 0.00 3.56
8895 13292 1.202604 AGTTATCGGCCGGGTGTATTG 60.203 52.381 27.83 0.00 0.00 1.90
8896 13293 1.125633 AGTTATCGGCCGGGTGTATT 58.874 50.000 27.83 2.25 0.00 1.89
8897 13294 1.891150 CTAGTTATCGGCCGGGTGTAT 59.109 52.381 27.83 13.76 0.00 2.29
8898 13295 1.321474 CTAGTTATCGGCCGGGTGTA 58.679 55.000 27.83 5.39 0.00 2.90
8899 13296 1.397390 CCTAGTTATCGGCCGGGTGT 61.397 60.000 27.83 11.80 0.00 4.16
8900 13297 1.366366 CCTAGTTATCGGCCGGGTG 59.634 63.158 27.83 8.63 0.00 4.61
8901 13298 1.075748 ACCTAGTTATCGGCCGGGT 60.076 57.895 27.83 19.78 0.00 5.28
8902 13299 1.366366 CACCTAGTTATCGGCCGGG 59.634 63.158 27.83 19.05 0.00 5.73
8903 13300 1.321474 TACACCTAGTTATCGGCCGG 58.679 55.000 27.83 8.96 0.00 6.13
8904 13301 2.620115 TCTTACACCTAGTTATCGGCCG 59.380 50.000 22.12 22.12 0.00 6.13
8905 13302 3.552478 GCTCTTACACCTAGTTATCGGCC 60.552 52.174 0.00 0.00 0.00 6.13
8906 13303 3.067742 TGCTCTTACACCTAGTTATCGGC 59.932 47.826 0.00 0.00 0.00 5.54
8907 13304 4.913335 TGCTCTTACACCTAGTTATCGG 57.087 45.455 0.00 0.00 0.00 4.18
8908 13305 5.221263 ACCATGCTCTTACACCTAGTTATCG 60.221 44.000 0.00 0.00 0.00 2.92
8909 13306 6.163135 ACCATGCTCTTACACCTAGTTATC 57.837 41.667 0.00 0.00 0.00 1.75
8910 13307 6.561519 AACCATGCTCTTACACCTAGTTAT 57.438 37.500 0.00 0.00 0.00 1.89
8911 13308 7.484993 TTAACCATGCTCTTACACCTAGTTA 57.515 36.000 0.00 0.00 0.00 2.24
8912 13309 4.910458 AACCATGCTCTTACACCTAGTT 57.090 40.909 0.00 0.00 0.00 2.24
8913 13310 6.561519 ATTAACCATGCTCTTACACCTAGT 57.438 37.500 0.00 0.00 0.00 2.57
8919 13316 9.667107 GGCTATATTATTAACCATGCTCTTACA 57.333 33.333 0.00 0.00 0.00 2.41
8920 13317 9.667107 TGGCTATATTATTAACCATGCTCTTAC 57.333 33.333 0.00 0.00 0.00 2.34
8922 13319 9.014297 GTTGGCTATATTATTAACCATGCTCTT 57.986 33.333 0.00 0.00 0.00 2.85
8923 13320 8.163408 TGTTGGCTATATTATTAACCATGCTCT 58.837 33.333 0.00 0.00 0.00 4.09
8924 13321 8.335532 TGTTGGCTATATTATTAACCATGCTC 57.664 34.615 0.00 0.00 0.00 4.26
8925 13322 8.704849 TTGTTGGCTATATTATTAACCATGCT 57.295 30.769 0.00 0.00 0.00 3.79
8926 13323 9.573133 GATTGTTGGCTATATTATTAACCATGC 57.427 33.333 0.00 0.00 0.00 4.06
8927 13324 9.773328 CGATTGTTGGCTATATTATTAACCATG 57.227 33.333 0.00 0.00 0.00 3.66
8928 13325 8.956426 CCGATTGTTGGCTATATTATTAACCAT 58.044 33.333 0.00 0.00 0.00 3.55
8929 13326 8.330466 CCGATTGTTGGCTATATTATTAACCA 57.670 34.615 0.00 0.00 0.00 3.67
8944 13341 4.073293 ACTCCTTATAGCCGATTGTTGG 57.927 45.455 0.00 0.00 0.00 3.77
8945 13342 4.260784 GCAACTCCTTATAGCCGATTGTTG 60.261 45.833 0.00 0.00 36.39 3.33
8946 13343 3.877508 GCAACTCCTTATAGCCGATTGTT 59.122 43.478 0.00 0.00 0.00 2.83
8947 13344 3.467803 GCAACTCCTTATAGCCGATTGT 58.532 45.455 0.00 0.00 0.00 2.71
8948 13345 2.808543 GGCAACTCCTTATAGCCGATTG 59.191 50.000 0.00 0.00 35.42 2.67
8949 13346 3.127425 GGCAACTCCTTATAGCCGATT 57.873 47.619 0.00 0.00 35.42 3.34
8950 13347 2.841442 GGCAACTCCTTATAGCCGAT 57.159 50.000 0.00 0.00 35.42 4.18
8953 13350 3.142174 GACATGGCAACTCCTTATAGCC 58.858 50.000 0.00 0.00 45.41 3.93
8954 13351 3.808728 TGACATGGCAACTCCTTATAGC 58.191 45.455 0.00 0.00 35.26 2.97
8955 13352 5.862845 AGATGACATGGCAACTCCTTATAG 58.137 41.667 4.70 0.00 35.26 1.31
8956 13353 5.894298 AGATGACATGGCAACTCCTTATA 57.106 39.130 4.70 0.00 35.26 0.98
8957 13354 4.785346 AGATGACATGGCAACTCCTTAT 57.215 40.909 4.70 0.00 35.26 1.73
8958 13355 5.894298 ATAGATGACATGGCAACTCCTTA 57.106 39.130 15.57 0.00 35.26 2.69
8959 13356 4.785346 ATAGATGACATGGCAACTCCTT 57.215 40.909 15.57 0.00 35.26 3.36
8960 13357 4.262808 GCTATAGATGACATGGCAACTCCT 60.263 45.833 15.57 6.82 35.26 3.69
8961 13358 3.999663 GCTATAGATGACATGGCAACTCC 59.000 47.826 15.57 0.00 37.61 3.85
8962 13359 3.999663 GGCTATAGATGACATGGCAACTC 59.000 47.826 15.57 4.06 31.98 3.01
8963 13360 3.392285 TGGCTATAGATGACATGGCAACT 59.608 43.478 16.39 16.39 31.98 3.16
8964 13361 3.743521 TGGCTATAGATGACATGGCAAC 58.256 45.455 4.70 1.74 31.98 4.17
8965 13362 4.136796 GTTGGCTATAGATGACATGGCAA 58.863 43.478 4.70 7.38 37.57 4.52
8966 13363 3.496692 GGTTGGCTATAGATGACATGGCA 60.497 47.826 2.18 2.18 31.98 4.92
8967 13364 3.077359 GGTTGGCTATAGATGACATGGC 58.923 50.000 3.21 0.00 0.00 4.40
8968 13365 4.630644 AGGTTGGCTATAGATGACATGG 57.369 45.455 3.21 0.00 0.00 3.66
8969 13366 5.371526 ACAAGGTTGGCTATAGATGACATG 58.628 41.667 3.21 0.00 0.00 3.21
8970 13367 5.636903 ACAAGGTTGGCTATAGATGACAT 57.363 39.130 3.21 0.00 0.00 3.06
8971 13368 5.453339 GCTACAAGGTTGGCTATAGATGACA 60.453 44.000 3.21 0.00 0.00 3.58
8972 13369 4.991687 GCTACAAGGTTGGCTATAGATGAC 59.008 45.833 3.21 0.00 0.00 3.06
8973 13370 4.040461 GGCTACAAGGTTGGCTATAGATGA 59.960 45.833 3.21 0.00 32.14 2.92
8974 13371 4.319177 GGCTACAAGGTTGGCTATAGATG 58.681 47.826 3.21 0.00 32.14 2.90
8975 13372 3.006967 CGGCTACAAGGTTGGCTATAGAT 59.993 47.826 3.21 0.00 32.60 1.98
8976 13373 2.364324 CGGCTACAAGGTTGGCTATAGA 59.636 50.000 3.21 0.00 32.60 1.98
8977 13374 2.548067 CCGGCTACAAGGTTGGCTATAG 60.548 54.545 0.00 0.00 32.60 1.31
8978 13375 1.414919 CCGGCTACAAGGTTGGCTATA 59.585 52.381 0.00 0.00 32.60 1.31
8979 13376 0.180406 CCGGCTACAAGGTTGGCTAT 59.820 55.000 0.00 0.00 32.60 2.97
8980 13377 1.600107 CCGGCTACAAGGTTGGCTA 59.400 57.895 0.00 0.00 32.60 3.93
8981 13378 2.351276 CCGGCTACAAGGTTGGCT 59.649 61.111 0.00 0.00 32.60 4.75
8982 13379 3.440415 GCCGGCTACAAGGTTGGC 61.440 66.667 22.15 0.00 35.04 4.52
8983 13380 1.378514 ATGCCGGCTACAAGGTTGG 60.379 57.895 29.70 0.00 0.00 3.77
8984 13381 0.960364 ACATGCCGGCTACAAGGTTG 60.960 55.000 29.70 13.61 0.00 3.77
8985 13382 0.616371 TACATGCCGGCTACAAGGTT 59.384 50.000 29.70 5.57 0.00 3.50
8986 13383 0.837272 ATACATGCCGGCTACAAGGT 59.163 50.000 29.70 17.55 0.00 3.50
8987 13384 2.831685 TATACATGCCGGCTACAAGG 57.168 50.000 29.70 11.73 0.00 3.61
8988 13385 5.479306 ACTATTATACATGCCGGCTACAAG 58.521 41.667 29.70 14.72 0.00 3.16
8989 13386 5.477607 ACTATTATACATGCCGGCTACAA 57.522 39.130 29.70 7.77 0.00 2.41
8990 13387 6.209986 ACTTACTATTATACATGCCGGCTACA 59.790 38.462 29.70 7.94 0.00 2.74
8991 13388 6.628185 ACTTACTATTATACATGCCGGCTAC 58.372 40.000 29.70 0.00 0.00 3.58
8992 13389 6.845758 ACTTACTATTATACATGCCGGCTA 57.154 37.500 29.70 14.84 0.00 3.93
8993 13390 5.740290 ACTTACTATTATACATGCCGGCT 57.260 39.130 29.70 10.43 0.00 5.52
8994 13391 6.796705 AAACTTACTATTATACATGCCGGC 57.203 37.500 22.73 22.73 0.00 6.13
9022 13419 9.603921 GGCCAACTACTAATAAAATAGTACACA 57.396 33.333 0.00 0.00 37.34 3.72
9023 13420 9.049523 GGGCCAACTACTAATAAAATAGTACAC 57.950 37.037 4.39 0.00 37.34 2.90
9024 13421 8.770322 TGGGCCAACTACTAATAAAATAGTACA 58.230 33.333 2.13 0.00 37.34 2.90
9025 13422 9.049523 GTGGGCCAACTACTAATAAAATAGTAC 57.950 37.037 8.40 0.00 37.34 2.73
9026 13423 8.212995 GGTGGGCCAACTACTAATAAAATAGTA 58.787 37.037 16.11 0.00 34.82 1.82
9027 13424 7.058525 GGTGGGCCAACTACTAATAAAATAGT 58.941 38.462 16.11 0.00 36.07 2.12
9028 13425 7.287810 AGGTGGGCCAACTACTAATAAAATAG 58.712 38.462 25.83 0.00 37.19 1.73
9029 13426 7.215743 AGGTGGGCCAACTACTAATAAAATA 57.784 36.000 25.83 0.00 37.19 1.40
9030 13427 6.087276 AGGTGGGCCAACTACTAATAAAAT 57.913 37.500 25.83 0.00 37.19 1.82
9031 13428 5.523883 AGGTGGGCCAACTACTAATAAAA 57.476 39.130 25.83 0.00 37.19 1.52
9032 13429 5.523883 AAGGTGGGCCAACTACTAATAAA 57.476 39.130 27.36 0.00 37.19 1.40
9033 13430 5.488203 TGTAAGGTGGGCCAACTACTAATAA 59.512 40.000 27.36 3.64 37.19 1.40
9034 13431 5.031495 TGTAAGGTGGGCCAACTACTAATA 58.969 41.667 27.36 10.49 37.19 0.98
9035 13432 3.847780 TGTAAGGTGGGCCAACTACTAAT 59.152 43.478 27.36 11.69 37.19 1.73
9036 13433 3.249752 TGTAAGGTGGGCCAACTACTAA 58.750 45.455 27.36 8.37 37.19 2.24
9037 13434 2.905246 TGTAAGGTGGGCCAACTACTA 58.095 47.619 27.36 12.19 37.19 1.82
9038 13435 1.737199 TGTAAGGTGGGCCAACTACT 58.263 50.000 27.36 13.41 37.19 2.57
9039 13436 2.156917 GTTGTAAGGTGGGCCAACTAC 58.843 52.381 27.36 21.80 35.47 2.73
9040 13437 1.074244 GGTTGTAAGGTGGGCCAACTA 59.926 52.381 27.36 6.45 37.80 2.24
9041 13438 0.178973 GGTTGTAAGGTGGGCCAACT 60.179 55.000 21.01 21.01 37.80 3.16
9042 13439 0.178973 AGGTTGTAAGGTGGGCCAAC 60.179 55.000 15.52 15.52 37.14 3.77
9043 13440 0.111639 GAGGTTGTAAGGTGGGCCAA 59.888 55.000 8.40 0.00 37.19 4.52
9044 13441 1.063070 TGAGGTTGTAAGGTGGGCCA 61.063 55.000 0.00 0.00 37.19 5.36
9045 13442 0.608308 GTGAGGTTGTAAGGTGGGCC 60.608 60.000 0.00 0.00 0.00 5.80
9046 13443 0.109723 TGTGAGGTTGTAAGGTGGGC 59.890 55.000 0.00 0.00 0.00 5.36
9047 13444 2.649531 TTGTGAGGTTGTAAGGTGGG 57.350 50.000 0.00 0.00 0.00 4.61
9048 13445 2.293399 GCTTTGTGAGGTTGTAAGGTGG 59.707 50.000 0.00 0.00 0.00 4.61
9049 13446 2.032030 CGCTTTGTGAGGTTGTAAGGTG 60.032 50.000 0.00 0.00 0.00 4.00
9050 13447 2.218603 CGCTTTGTGAGGTTGTAAGGT 58.781 47.619 0.00 0.00 0.00 3.50
9051 13448 2.218603 ACGCTTTGTGAGGTTGTAAGG 58.781 47.619 0.00 0.00 0.00 2.69
9052 13449 2.223377 GGACGCTTTGTGAGGTTGTAAG 59.777 50.000 0.00 0.00 0.00 2.34
9053 13450 2.158871 AGGACGCTTTGTGAGGTTGTAA 60.159 45.455 0.00 0.00 0.00 2.41
9054 13451 1.414919 AGGACGCTTTGTGAGGTTGTA 59.585 47.619 0.00 0.00 0.00 2.41
9055 13452 0.180406 AGGACGCTTTGTGAGGTTGT 59.820 50.000 0.00 0.00 0.00 3.32
9056 13453 0.588252 CAGGACGCTTTGTGAGGTTG 59.412 55.000 0.00 0.00 0.00 3.77
9057 13454 0.468226 TCAGGACGCTTTGTGAGGTT 59.532 50.000 0.00 0.00 0.00 3.50
9058 13455 0.034059 CTCAGGACGCTTTGTGAGGT 59.966 55.000 0.00 0.00 34.06 3.85
9059 13456 2.832931 CTCAGGACGCTTTGTGAGG 58.167 57.895 0.00 0.00 34.06 3.86
9060 13457 1.294659 GCCTCAGGACGCTTTGTGAG 61.295 60.000 0.00 0.00 36.89 3.51
9061 13458 1.301716 GCCTCAGGACGCTTTGTGA 60.302 57.895 0.00 0.00 0.00 3.58
9062 13459 1.294659 GAGCCTCAGGACGCTTTGTG 61.295 60.000 0.00 0.00 34.84 3.33
9063 13460 1.004440 GAGCCTCAGGACGCTTTGT 60.004 57.895 0.00 0.00 34.84 2.83
9064 13461 2.097038 CGAGCCTCAGGACGCTTTG 61.097 63.158 0.00 0.00 34.84 2.77
9065 13462 2.262915 CGAGCCTCAGGACGCTTT 59.737 61.111 0.00 0.00 34.84 3.51
9066 13463 2.992114 ACGAGCCTCAGGACGCTT 60.992 61.111 10.07 0.00 34.84 4.68
9067 13464 3.753434 CACGAGCCTCAGGACGCT 61.753 66.667 10.07 0.00 38.27 5.07
9069 13466 2.329678 CTAGCACGAGCCTCAGGACG 62.330 65.000 0.00 1.28 43.56 4.79
9070 13467 1.032657 TCTAGCACGAGCCTCAGGAC 61.033 60.000 0.00 0.00 43.56 3.85
9071 13468 0.749818 CTCTAGCACGAGCCTCAGGA 60.750 60.000 0.00 0.00 43.56 3.86
9072 13469 1.732917 CTCTAGCACGAGCCTCAGG 59.267 63.158 0.00 0.00 43.56 3.86
9079 13476 2.187493 TAGCCGGCTCTAGCACGAG 61.187 63.158 36.73 0.00 44.36 4.18
9080 13477 2.124445 TAGCCGGCTCTAGCACGA 60.124 61.111 36.73 10.36 44.36 4.35
9081 13478 1.164662 TAGTAGCCGGCTCTAGCACG 61.165 60.000 36.73 5.23 44.36 5.34
9082 13479 1.030457 TTAGTAGCCGGCTCTAGCAC 58.970 55.000 36.73 25.44 44.36 4.40
9083 13480 1.030457 GTTAGTAGCCGGCTCTAGCA 58.970 55.000 36.73 13.19 44.36 3.49
9084 13481 0.314618 GGTTAGTAGCCGGCTCTAGC 59.685 60.000 36.73 29.93 41.14 3.42
9085 13482 1.688772 TGGTTAGTAGCCGGCTCTAG 58.311 55.000 36.73 0.00 0.00 2.43
9086 13483 2.029623 CTTGGTTAGTAGCCGGCTCTA 58.970 52.381 36.73 28.29 0.00 2.43
9087 13484 0.824759 CTTGGTTAGTAGCCGGCTCT 59.175 55.000 36.73 29.37 0.00 4.09
9088 13485 0.822164 TCTTGGTTAGTAGCCGGCTC 59.178 55.000 36.73 24.10 0.00 4.70
9089 13486 0.824759 CTCTTGGTTAGTAGCCGGCT 59.175 55.000 34.85 34.85 0.00 5.52
9090 13487 0.810426 GCTCTTGGTTAGTAGCCGGC 60.810 60.000 21.89 21.89 0.00 6.13
9091 13488 0.179081 GGCTCTTGGTTAGTAGCCGG 60.179 60.000 0.00 0.00 44.63 6.13
9092 13489 3.364277 GGCTCTTGGTTAGTAGCCG 57.636 57.895 0.00 0.00 44.63 5.52
9094 13491 1.208293 AGCAGGCTCTTGGTTAGTAGC 59.792 52.381 0.00 0.00 0.00 3.58
9095 13492 3.196685 AGAAGCAGGCTCTTGGTTAGTAG 59.803 47.826 0.00 0.00 38.76 2.57
9096 13493 3.173965 AGAAGCAGGCTCTTGGTTAGTA 58.826 45.455 0.00 0.00 38.76 1.82
9097 13494 1.981495 AGAAGCAGGCTCTTGGTTAGT 59.019 47.619 0.00 0.00 38.76 2.24
9098 13495 2.235898 AGAGAAGCAGGCTCTTGGTTAG 59.764 50.000 0.00 0.00 39.62 2.34
9099 13496 2.260822 AGAGAAGCAGGCTCTTGGTTA 58.739 47.619 0.00 0.00 39.62 2.85
9100 13497 1.063183 AGAGAAGCAGGCTCTTGGTT 58.937 50.000 0.00 0.00 39.62 3.67
9101 13498 2.770748 AGAGAAGCAGGCTCTTGGT 58.229 52.632 0.00 0.00 39.62 3.67
9105 13502 2.236489 AGAGAAGAGAAGCAGGCTCT 57.764 50.000 0.00 0.00 44.25 4.09
9106 13503 3.261580 GAAAGAGAAGAGAAGCAGGCTC 58.738 50.000 0.00 0.00 0.00 4.70
9107 13504 2.027285 GGAAAGAGAAGAGAAGCAGGCT 60.027 50.000 0.00 0.00 0.00 4.58
9108 13505 2.027285 AGGAAAGAGAAGAGAAGCAGGC 60.027 50.000 0.00 0.00 0.00 4.85
9109 13506 3.369366 GGAGGAAAGAGAAGAGAAGCAGG 60.369 52.174 0.00 0.00 0.00 4.85
9110 13507 3.260380 TGGAGGAAAGAGAAGAGAAGCAG 59.740 47.826 0.00 0.00 0.00 4.24
9111 13508 3.242867 TGGAGGAAAGAGAAGAGAAGCA 58.757 45.455 0.00 0.00 0.00 3.91
9112 13509 3.971245 TGGAGGAAAGAGAAGAGAAGC 57.029 47.619 0.00 0.00 0.00 3.86
9113 13510 5.482163 AGTTGGAGGAAAGAGAAGAGAAG 57.518 43.478 0.00 0.00 0.00 2.85
9114 13511 6.555360 ACTTAGTTGGAGGAAAGAGAAGAGAA 59.445 38.462 0.00 0.00 0.00 2.87
9115 13512 6.078664 ACTTAGTTGGAGGAAAGAGAAGAGA 58.921 40.000 0.00 0.00 0.00 3.10
9116 13513 6.353404 ACTTAGTTGGAGGAAAGAGAAGAG 57.647 41.667 0.00 0.00 0.00 2.85
9117 13514 7.850935 TTACTTAGTTGGAGGAAAGAGAAGA 57.149 36.000 0.00 0.00 0.00 2.87
9118 13515 8.368668 TCTTTACTTAGTTGGAGGAAAGAGAAG 58.631 37.037 7.29 0.00 44.91 2.85
9119 13516 8.258850 TCTTTACTTAGTTGGAGGAAAGAGAA 57.741 34.615 7.29 0.00 44.91 2.87
9120 13517 7.850935 TCTTTACTTAGTTGGAGGAAAGAGA 57.149 36.000 7.29 0.00 44.91 3.10
9156 13553 9.736414 AGATGACATAAGCATGCTATAAGAATT 57.264 29.630 23.00 4.92 35.39 2.17
9157 13554 9.736414 AAGATGACATAAGCATGCTATAAGAAT 57.264 29.630 23.00 11.34 35.39 2.40
9176 13573 9.145865 GCCTTAGAGCAAGTATAATAAGATGAC 57.854 37.037 0.00 0.00 31.77 3.06
9177 13574 8.870116 TGCCTTAGAGCAAGTATAATAAGATGA 58.130 33.333 0.00 0.00 40.56 2.92
9191 13588 8.951025 CGATAGAAAACACTTGCCTTAGAGCAA 61.951 40.741 7.63 7.63 45.36 3.91
9192 13589 3.820557 AGAAAACACTTGCCTTAGAGCA 58.179 40.909 0.00 0.00 42.17 4.26
9193 13590 5.220491 CGATAGAAAACACTTGCCTTAGAGC 60.220 44.000 0.00 0.00 39.76 4.09
9194 13591 5.292101 CCGATAGAAAACACTTGCCTTAGAG 59.708 44.000 0.00 0.00 39.76 2.43
9195 13592 5.175859 CCGATAGAAAACACTTGCCTTAGA 58.824 41.667 0.00 0.00 39.76 2.10
9196 13593 4.332819 CCCGATAGAAAACACTTGCCTTAG 59.667 45.833 0.00 0.00 39.76 2.18
9197 13594 4.258543 CCCGATAGAAAACACTTGCCTTA 58.741 43.478 0.00 0.00 39.76 2.69
9198 13595 3.081804 CCCGATAGAAAACACTTGCCTT 58.918 45.455 0.00 0.00 39.76 4.35
9199 13596 2.039879 ACCCGATAGAAAACACTTGCCT 59.960 45.455 0.00 0.00 39.76 4.75
9200 13597 2.433436 ACCCGATAGAAAACACTTGCC 58.567 47.619 0.00 0.00 39.76 4.52
9201 13598 3.751698 AGAACCCGATAGAAAACACTTGC 59.248 43.478 0.00 0.00 39.76 4.01
9202 13599 4.154195 CCAGAACCCGATAGAAAACACTTG 59.846 45.833 0.00 0.00 39.76 3.16
9203 13600 4.324267 CCAGAACCCGATAGAAAACACTT 58.676 43.478 0.00 0.00 39.76 3.16
9204 13601 3.307480 CCCAGAACCCGATAGAAAACACT 60.307 47.826 0.00 0.00 39.76 3.55
9205 13602 3.007635 CCCAGAACCCGATAGAAAACAC 58.992 50.000 0.00 0.00 39.76 3.32
9206 13603 2.617021 GCCCAGAACCCGATAGAAAACA 60.617 50.000 0.00 0.00 39.76 2.83
9207 13604 2.014857 GCCCAGAACCCGATAGAAAAC 58.985 52.381 0.00 0.00 39.76 2.43
9208 13605 1.913419 AGCCCAGAACCCGATAGAAAA 59.087 47.619 0.00 0.00 39.76 2.29
9209 13606 1.580059 AGCCCAGAACCCGATAGAAA 58.420 50.000 0.00 0.00 39.76 2.52
9210 13607 1.580059 AAGCCCAGAACCCGATAGAA 58.420 50.000 0.00 0.00 39.76 2.10
9211 13608 2.037144 GTAAGCCCAGAACCCGATAGA 58.963 52.381 0.00 0.00 39.76 1.98
9212 13609 1.070289 GGTAAGCCCAGAACCCGATAG 59.930 57.143 0.00 0.00 0.00 2.08
9213 13610 1.125633 GGTAAGCCCAGAACCCGATA 58.874 55.000 0.00 0.00 0.00 2.92
9214 13611 1.912971 GGTAAGCCCAGAACCCGAT 59.087 57.895 0.00 0.00 0.00 4.18
9215 13612 2.652095 CGGTAAGCCCAGAACCCGA 61.652 63.158 0.00 0.00 37.66 5.14
9216 13613 1.606885 TACGGTAAGCCCAGAACCCG 61.607 60.000 0.00 0.00 41.09 5.28
9217 13614 0.614812 TTACGGTAAGCCCAGAACCC 59.385 55.000 0.00 0.00 0.00 4.11
9218 13615 2.704464 ATTACGGTAAGCCCAGAACC 57.296 50.000 6.74 0.00 0.00 3.62
9219 13616 4.034858 GCTTAATTACGGTAAGCCCAGAAC 59.965 45.833 6.74 0.00 45.06 3.01
9220 13617 4.193865 GCTTAATTACGGTAAGCCCAGAA 58.806 43.478 6.74 0.00 45.06 3.02
9221 13618 3.800531 GCTTAATTACGGTAAGCCCAGA 58.199 45.455 6.74 0.00 45.06 3.86
9227 13624 4.510571 ACACCCAGCTTAATTACGGTAAG 58.489 43.478 6.74 0.00 0.00 2.34
9228 13625 4.556592 ACACCCAGCTTAATTACGGTAA 57.443 40.909 2.62 2.62 0.00 2.85
9229 13626 5.674052 TTACACCCAGCTTAATTACGGTA 57.326 39.130 0.00 0.00 0.00 4.02
9230 13627 4.556592 TTACACCCAGCTTAATTACGGT 57.443 40.909 0.00 0.00 0.00 4.83
9231 13628 4.201881 GCTTTACACCCAGCTTAATTACGG 60.202 45.833 0.00 0.00 32.87 4.02
9232 13629 4.393680 TGCTTTACACCCAGCTTAATTACG 59.606 41.667 0.00 0.00 36.92 3.18
9233 13630 5.637809 GTGCTTTACACCCAGCTTAATTAC 58.362 41.667 0.00 0.00 44.02 1.89
9234 13631 5.890424 GTGCTTTACACCCAGCTTAATTA 57.110 39.130 0.00 0.00 44.02 1.40
9235 13632 4.783764 GTGCTTTACACCCAGCTTAATT 57.216 40.909 0.00 0.00 44.02 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.