Multiple sequence alignment - TraesCS2D01G496000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G496000 chr2D 100.000 3565 0 0 1 3565 592628048 592624484 0.000000e+00 6584.0
1 TraesCS2D01G496000 chr2D 89.720 214 18 4 1661 1872 80828704 80828915 1.630000e-68 270.0
2 TraesCS2D01G496000 chr2D 82.796 93 8 5 557 642 21315112 21315021 3.820000e-10 76.8
3 TraesCS2D01G496000 chr2A 91.502 2424 92 36 659 3045 727184434 727182088 0.000000e+00 3230.0
4 TraesCS2D01G496000 chr2A 81.900 779 77 30 1041 1799 288599644 288598910 1.830000e-167 599.0
5 TraesCS2D01G496000 chr2A 81.105 778 85 34 1041 1799 49863294 49862560 1.860000e-157 566.0
6 TraesCS2D01G496000 chr2A 97.865 281 6 0 1 281 727185060 727184780 1.490000e-133 486.0
7 TraesCS2D01G496000 chr2A 90.642 374 13 7 3019 3391 727181988 727181636 8.950000e-131 477.0
8 TraesCS2D01G496000 chr2A 92.857 56 4 0 985 1040 288599724 288599669 8.200000e-12 82.4
9 TraesCS2D01G496000 chr2A 93.878 49 3 0 985 1033 49863374 49863326 1.370000e-09 75.0
10 TraesCS2D01G496000 chr2A 97.674 43 0 1 3524 3565 727180595 727180553 4.940000e-09 73.1
11 TraesCS2D01G496000 chr2B 82.754 1380 118 50 648 1941 718596388 718595043 0.000000e+00 1120.0
12 TraesCS2D01G496000 chr2B 86.185 789 78 19 2156 2921 718594603 718593823 0.000000e+00 824.0
13 TraesCS2D01G496000 chr2B 86.546 498 36 11 3 487 718597015 718596536 1.470000e-143 520.0
14 TraesCS2D01G496000 chr2B 95.570 316 9 3 3043 3357 718593822 718593511 5.310000e-138 501.0
15 TraesCS2D01G496000 chr3B 91.013 612 43 10 1541 2147 184209490 184208886 0.000000e+00 815.0
16 TraesCS2D01G496000 chr3B 91.192 193 15 2 1470 1662 808608520 808608710 9.820000e-66 261.0
17 TraesCS2D01G496000 chr4A 90.998 611 43 10 1542 2147 731142775 731142172 0.000000e+00 813.0
18 TraesCS2D01G496000 chr4A 90.523 612 46 10 1541 2147 669508036 669507432 0.000000e+00 798.0
19 TraesCS2D01G496000 chr4A 81.243 853 78 37 985 1799 614805483 614804675 6.540000e-172 614.0
20 TraesCS2D01G496000 chr4A 94.071 253 11 1 1929 2177 519261645 519261393 7.220000e-102 381.0
21 TraesCS2D01G496000 chr4A 90.129 233 19 4 1661 1891 519261873 519261643 2.080000e-77 300.0
22 TraesCS2D01G496000 chr4A 86.923 130 11 2 2918 3045 381220598 381220473 1.330000e-29 141.0
23 TraesCS2D01G496000 chr7A 82.857 770 102 16 1042 1800 478038506 478037756 0.000000e+00 664.0
24 TraesCS2D01G496000 chr7A 80.934 771 82 31 1041 1791 55251498 55250773 1.870000e-152 549.0
25 TraesCS2D01G496000 chr7A 81.507 730 74 29 1090 1799 567882003 567881315 8.700000e-151 544.0
26 TraesCS2D01G496000 chr7A 87.692 130 9 3 2919 3045 192667804 192667929 1.030000e-30 145.0
27 TraesCS2D01G496000 chr7A 89.130 46 5 0 985 1030 478038585 478038540 1.380000e-04 58.4
28 TraesCS2D01G496000 chr3A 81.900 779 77 30 1035 1793 301210511 301211245 1.830000e-167 599.0
29 TraesCS2D01G496000 chr3A 81.050 781 86 36 1032 1793 727324592 727325329 1.860000e-157 566.0
30 TraesCS2D01G496000 chr3A 80.779 770 84 38 1041 1791 256404148 256403424 8.700000e-151 544.0
31 TraesCS2D01G496000 chr3A 89.189 74 6 2 972 1045 727324510 727324581 1.360000e-14 91.6
32 TraesCS2D01G496000 chr3A 94.000 50 3 0 985 1034 256404228 256404179 3.820000e-10 76.8
33 TraesCS2D01G496000 chr5A 81.282 780 85 36 1032 1793 13164726 13165462 3.090000e-160 575.0
34 TraesCS2D01G496000 chr5A 79.457 847 94 38 985 1791 699174589 699173783 8.770000e-146 527.0
35 TraesCS2D01G496000 chr6A 79.556 856 97 41 1044 1868 359867761 359866953 1.130000e-149 540.0
36 TraesCS2D01G496000 chr6A 80.597 670 69 29 1144 1793 58338452 58339080 9.020000e-126 460.0
37 TraesCS2D01G496000 chr6A 93.574 249 16 0 1929 2177 87407856 87407608 4.350000e-99 372.0
38 TraesCS2D01G496000 chr5B 95.851 241 10 0 1937 2177 43550302 43550542 1.200000e-104 390.0
39 TraesCS2D01G496000 chr5B 86.667 135 11 4 2915 3046 617821342 617821212 3.710000e-30 143.0
40 TraesCS2D01G496000 chr5D 95.833 240 10 0 1929 2168 25521888 25522127 4.320000e-104 388.0
41 TraesCS2D01G496000 chr5D 91.416 233 16 4 1661 1891 25521660 25521890 2.070000e-82 316.0
42 TraesCS2D01G496000 chr1A 93.676 253 12 1 1929 2177 212155626 212155374 3.360000e-100 375.0
43 TraesCS2D01G496000 chr1A 89.700 233 20 4 1661 1891 212155854 212155624 9.680000e-76 294.0
44 TraesCS2D01G496000 chr1A 86.822 129 14 2 2918 3045 234234014 234234140 1.330000e-29 141.0
45 TraesCS2D01G496000 chr3D 90.187 214 17 4 1661 1872 350070593 350070804 3.510000e-70 276.0
46 TraesCS2D01G496000 chr3D 86.822 129 13 3 2918 3045 548713011 548713136 1.330000e-29 141.0
47 TraesCS2D01G496000 chr7B 89.630 135 6 4 2915 3045 327272929 327273059 7.920000e-37 165.0
48 TraesCS2D01G496000 chr7B 85.156 128 12 5 2923 3047 327273054 327272931 1.340000e-24 124.0
49 TraesCS2D01G496000 chr4B 87.200 125 13 3 2917 3040 53069536 53069414 4.800000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G496000 chr2D 592624484 592628048 3564 True 6584.000 6584 100.00000 1 3565 1 chr2D.!!$R2 3564
1 TraesCS2D01G496000 chr2A 727180553 727185060 4507 True 1066.525 3230 94.42075 1 3565 4 chr2A.!!$R3 3564
2 TraesCS2D01G496000 chr2A 288598910 288599724 814 True 340.700 599 87.37850 985 1799 2 chr2A.!!$R2 814
3 TraesCS2D01G496000 chr2A 49862560 49863374 814 True 320.500 566 87.49150 985 1799 2 chr2A.!!$R1 814
4 TraesCS2D01G496000 chr2B 718593511 718597015 3504 True 741.250 1120 87.76375 3 3357 4 chr2B.!!$R1 3354
5 TraesCS2D01G496000 chr3B 184208886 184209490 604 True 815.000 815 91.01300 1541 2147 1 chr3B.!!$R1 606
6 TraesCS2D01G496000 chr4A 731142172 731142775 603 True 813.000 813 90.99800 1542 2147 1 chr4A.!!$R4 605
7 TraesCS2D01G496000 chr4A 669507432 669508036 604 True 798.000 798 90.52300 1541 2147 1 chr4A.!!$R3 606
8 TraesCS2D01G496000 chr4A 614804675 614805483 808 True 614.000 614 81.24300 985 1799 1 chr4A.!!$R2 814
9 TraesCS2D01G496000 chr7A 55250773 55251498 725 True 549.000 549 80.93400 1041 1791 1 chr7A.!!$R1 750
10 TraesCS2D01G496000 chr7A 567881315 567882003 688 True 544.000 544 81.50700 1090 1799 1 chr7A.!!$R2 709
11 TraesCS2D01G496000 chr7A 478037756 478038585 829 True 361.200 664 85.99350 985 1800 2 chr7A.!!$R3 815
12 TraesCS2D01G496000 chr3A 301210511 301211245 734 False 599.000 599 81.90000 1035 1793 1 chr3A.!!$F1 758
13 TraesCS2D01G496000 chr3A 727324510 727325329 819 False 328.800 566 85.11950 972 1793 2 chr3A.!!$F2 821
14 TraesCS2D01G496000 chr3A 256403424 256404228 804 True 310.400 544 87.38950 985 1791 2 chr3A.!!$R1 806
15 TraesCS2D01G496000 chr5A 13164726 13165462 736 False 575.000 575 81.28200 1032 1793 1 chr5A.!!$F1 761
16 TraesCS2D01G496000 chr5A 699173783 699174589 806 True 527.000 527 79.45700 985 1791 1 chr5A.!!$R1 806
17 TraesCS2D01G496000 chr6A 359866953 359867761 808 True 540.000 540 79.55600 1044 1868 1 chr6A.!!$R2 824
18 TraesCS2D01G496000 chr6A 58338452 58339080 628 False 460.000 460 80.59700 1144 1793 1 chr6A.!!$F1 649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
611 906 0.036732 AGGATGAAAGTTGGCGAGCA 59.963 50.0 0.00 0.0 0.0 4.26 F
1020 1347 0.321671 TGGCCTTCTCCTCTTTCACG 59.678 55.0 3.32 0.0 0.0 4.35 F
1816 2191 0.808755 GTGTTGAAATTCCCGCGGAT 59.191 50.0 30.73 10.8 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1416 1779 0.247736 CTTAGCGAGTTCCTGCAGGT 59.752 55.0 31.58 13.82 36.34 4.00 R
1915 2299 0.958091 CCGGTGTGATGCCAGAAAAA 59.042 50.0 0.00 0.00 0.00 1.94 R
3518 5242 0.032952 TTCGAAAGCTAGCACACCGT 59.967 50.0 18.83 0.00 0.00 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
186 187 2.027653 TCATCTGCCGTGTCATGGTTTA 60.028 45.455 12.77 0.00 0.00 2.01
270 271 4.267349 TGTCTTGGTACTTTGGTAGAGC 57.733 45.455 0.00 0.00 0.00 4.09
291 293 1.542030 CGTCAGGCTCAGAGTTACACT 59.458 52.381 0.00 0.00 0.00 3.55
313 325 6.020281 CACTCTTTGGACTAGAATCGATTTCG 60.020 42.308 12.81 6.43 39.46 3.46
315 327 6.034591 TCTTTGGACTAGAATCGATTTCGTC 58.965 40.000 12.81 16.81 39.46 4.20
316 328 4.976224 TGGACTAGAATCGATTTCGTCA 57.024 40.909 24.11 13.04 39.46 4.35
322 334 7.166142 GGACTAGAATCGATTTCGTCAGTAAAG 59.834 40.741 24.11 10.55 39.46 1.85
344 356 5.003804 AGTTTTGACATAGCTTGGTACTGG 58.996 41.667 0.00 0.00 0.00 4.00
351 363 0.249398 AGCTTGGTACTGGTAAGGCG 59.751 55.000 0.00 0.00 0.00 5.52
355 367 0.742505 TGGTACTGGTAAGGCGATCG 59.257 55.000 11.69 11.69 0.00 3.69
362 374 1.143969 GGTAAGGCGATCGAACACCG 61.144 60.000 21.57 0.00 40.25 4.94
363 375 1.140161 TAAGGCGATCGAACACCGG 59.860 57.895 21.57 0.00 39.14 5.28
367 379 2.578713 CGATCGAACACCGGACGG 60.579 66.667 10.26 9.56 39.14 4.79
372 384 1.214589 CGAACACCGGACGGAAGAT 59.785 57.895 18.80 4.17 38.96 2.40
373 385 0.452987 CGAACACCGGACGGAAGATA 59.547 55.000 18.80 0.00 38.96 1.98
378 390 2.019249 CACCGGACGGAAGATAGTACA 58.981 52.381 18.80 0.00 38.96 2.90
398 410 7.361127 AGTACATGTACAGTTATATCGACTGC 58.639 38.462 32.02 4.69 46.53 4.40
399 411 5.529791 ACATGTACAGTTATATCGACTGCC 58.470 41.667 15.45 9.37 46.53 4.85
438 450 1.134551 GGCACAGAAAAGGCAACCAAA 60.135 47.619 0.00 0.00 37.17 3.28
439 451 1.933181 GCACAGAAAAGGCAACCAAAC 59.067 47.619 0.00 0.00 37.17 2.93
440 452 2.418609 GCACAGAAAAGGCAACCAAACT 60.419 45.455 0.00 0.00 37.17 2.66
442 454 3.865164 CACAGAAAAGGCAACCAAACTTC 59.135 43.478 0.00 0.00 37.17 3.01
444 456 4.020662 ACAGAAAAGGCAACCAAACTTCAA 60.021 37.500 0.00 0.00 37.17 2.69
445 457 4.329801 CAGAAAAGGCAACCAAACTTCAAC 59.670 41.667 0.00 0.00 37.17 3.18
446 458 4.222810 AGAAAAGGCAACCAAACTTCAACT 59.777 37.500 0.00 0.00 37.17 3.16
447 459 4.551702 AAAGGCAACCAAACTTCAACTT 57.448 36.364 0.00 0.00 37.17 2.66
448 460 3.525268 AGGCAACCAAACTTCAACTTG 57.475 42.857 0.00 0.00 37.17 3.16
449 461 3.096092 AGGCAACCAAACTTCAACTTGA 58.904 40.909 0.00 0.00 37.17 3.02
451 463 4.020662 AGGCAACCAAACTTCAACTTGAAA 60.021 37.500 5.72 0.00 34.09 2.69
452 464 4.875536 GGCAACCAAACTTCAACTTGAAAT 59.124 37.500 5.72 0.00 35.73 2.17
457 469 6.816136 ACCAAACTTCAACTTGAAATAAGGG 58.184 36.000 5.72 6.53 35.73 3.95
460 472 7.984617 CCAAACTTCAACTTGAAATAAGGGAAA 59.015 33.333 5.72 0.00 35.73 3.13
466 478 7.125053 TTCAACTTGAAATAAGGGAAACACCTT 59.875 33.333 1.47 2.76 42.43 3.50
478 490 2.409948 AACACCTTAGAGATGGCTGC 57.590 50.000 0.00 0.00 0.00 5.25
487 499 1.133761 AGAGATGGCTGCGAGGTACTA 60.134 52.381 0.00 0.00 41.55 1.82
488 500 1.268352 GAGATGGCTGCGAGGTACTAG 59.732 57.143 0.00 0.00 41.55 2.57
489 501 1.033574 GATGGCTGCGAGGTACTAGT 58.966 55.000 0.00 0.00 41.55 2.57
491 503 0.815734 TGGCTGCGAGGTACTAGTTC 59.184 55.000 0.00 0.00 41.55 3.01
492 504 0.815734 GGCTGCGAGGTACTAGTTCA 59.184 55.000 0.00 0.00 41.55 3.18
510 805 9.449719 ACTAGTTCATATTTAACTTTGGACTGG 57.550 33.333 7.26 6.89 38.18 4.00
511 806 9.667107 CTAGTTCATATTTAACTTTGGACTGGA 57.333 33.333 7.26 0.00 38.18 3.86
512 807 8.336801 AGTTCATATTTAACTTTGGACTGGAC 57.663 34.615 0.00 0.00 33.39 4.02
513 808 7.393515 AGTTCATATTTAACTTTGGACTGGACC 59.606 37.037 0.00 0.00 33.39 4.46
514 809 7.027874 TCATATTTAACTTTGGACTGGACCT 57.972 36.000 0.00 0.00 0.00 3.85
515 810 6.884295 TCATATTTAACTTTGGACTGGACCTG 59.116 38.462 0.00 0.00 0.00 4.00
516 811 3.502123 TTAACTTTGGACTGGACCTGG 57.498 47.619 3.15 0.00 0.00 4.45
517 812 1.518367 AACTTTGGACTGGACCTGGA 58.482 50.000 0.00 0.00 0.00 3.86
518 813 1.747444 ACTTTGGACTGGACCTGGAT 58.253 50.000 0.00 0.00 0.00 3.41
519 814 2.915869 ACTTTGGACTGGACCTGGATA 58.084 47.619 0.00 0.00 0.00 2.59
520 815 3.464828 ACTTTGGACTGGACCTGGATAT 58.535 45.455 0.00 0.00 0.00 1.63
521 816 3.456277 ACTTTGGACTGGACCTGGATATC 59.544 47.826 0.00 0.00 0.00 1.63
522 817 2.103153 TGGACTGGACCTGGATATCC 57.897 55.000 15.39 15.39 35.37 2.59
523 818 1.293763 TGGACTGGACCTGGATATCCA 59.706 52.381 23.17 23.17 45.30 3.41
536 831 5.715439 TGGATATCCAGTGAAGGTCAAAT 57.285 39.130 20.98 0.00 42.01 2.32
537 832 6.078456 TGGATATCCAGTGAAGGTCAAATT 57.922 37.500 20.98 0.00 42.01 1.82
538 833 6.493166 TGGATATCCAGTGAAGGTCAAATTT 58.507 36.000 20.98 0.00 42.01 1.82
539 834 6.953520 TGGATATCCAGTGAAGGTCAAATTTT 59.046 34.615 20.98 0.00 42.01 1.82
540 835 7.454380 TGGATATCCAGTGAAGGTCAAATTTTT 59.546 33.333 20.98 0.00 42.01 1.94
541 836 8.966868 GGATATCCAGTGAAGGTCAAATTTTTA 58.033 33.333 17.34 0.00 35.64 1.52
543 838 6.648879 TCCAGTGAAGGTCAAATTTTTAGG 57.351 37.500 0.00 0.00 0.00 2.69
544 839 5.010617 TCCAGTGAAGGTCAAATTTTTAGGC 59.989 40.000 0.00 0.00 0.00 3.93
545 840 5.221422 CCAGTGAAGGTCAAATTTTTAGGCA 60.221 40.000 0.00 0.00 0.00 4.75
546 841 6.458210 CAGTGAAGGTCAAATTTTTAGGCAT 58.542 36.000 0.00 0.00 0.00 4.40
547 842 6.366877 CAGTGAAGGTCAAATTTTTAGGCATG 59.633 38.462 0.00 0.00 0.00 4.06
548 843 5.639082 GTGAAGGTCAAATTTTTAGGCATGG 59.361 40.000 0.00 0.00 0.00 3.66
549 844 4.206477 AGGTCAAATTTTTAGGCATGGC 57.794 40.909 12.14 12.14 0.00 4.40
550 845 2.929398 GGTCAAATTTTTAGGCATGGCG 59.071 45.455 14.30 0.00 0.00 5.69
551 846 3.367910 GGTCAAATTTTTAGGCATGGCGA 60.368 43.478 14.30 5.66 0.00 5.54
552 847 4.241681 GTCAAATTTTTAGGCATGGCGAA 58.758 39.130 14.30 12.47 0.00 4.70
553 848 4.688413 GTCAAATTTTTAGGCATGGCGAAA 59.312 37.500 20.90 20.90 0.00 3.46
554 849 4.688413 TCAAATTTTTAGGCATGGCGAAAC 59.312 37.500 23.74 0.00 0.00 2.78
555 850 2.339728 TTTTTAGGCATGGCGAAACG 57.660 45.000 23.74 0.00 0.00 3.60
556 851 1.524848 TTTTAGGCATGGCGAAACGA 58.475 45.000 23.74 10.44 0.00 3.85
557 852 1.524848 TTTAGGCATGGCGAAACGAA 58.475 45.000 20.90 2.10 0.00 3.85
558 853 1.524848 TTAGGCATGGCGAAACGAAA 58.475 45.000 14.30 0.00 0.00 3.46
559 854 1.524848 TAGGCATGGCGAAACGAAAA 58.475 45.000 14.30 0.00 0.00 2.29
560 855 0.039527 AGGCATGGCGAAACGAAAAC 60.040 50.000 14.30 0.00 0.00 2.43
561 856 1.334288 GGCATGGCGAAACGAAAACG 61.334 55.000 2.41 0.00 0.00 3.60
562 857 0.384974 GCATGGCGAAACGAAAACGA 60.385 50.000 0.00 0.00 0.00 3.85
563 858 1.922444 GCATGGCGAAACGAAAACGAA 60.922 47.619 0.00 0.00 0.00 3.85
564 859 2.580589 CATGGCGAAACGAAAACGAAT 58.419 42.857 0.00 0.00 0.00 3.34
565 860 2.025544 TGGCGAAACGAAAACGAATG 57.974 45.000 0.00 0.00 0.00 2.67
566 861 1.331138 TGGCGAAACGAAAACGAATGT 59.669 42.857 0.00 0.00 0.00 2.71
567 862 2.223294 TGGCGAAACGAAAACGAATGTT 60.223 40.909 0.00 0.00 40.98 2.71
582 877 7.692908 AACGAATGTTTTTCATGGTAAGTTG 57.307 32.000 0.00 0.00 36.81 3.16
583 878 6.801575 ACGAATGTTTTTCATGGTAAGTTGT 58.198 32.000 0.00 0.00 36.81 3.32
584 879 6.695278 ACGAATGTTTTTCATGGTAAGTTGTG 59.305 34.615 0.00 0.00 36.81 3.33
585 880 6.695278 CGAATGTTTTTCATGGTAAGTTGTGT 59.305 34.615 0.00 0.00 36.81 3.72
586 881 7.221838 CGAATGTTTTTCATGGTAAGTTGTGTT 59.778 33.333 0.00 0.00 36.81 3.32
587 882 7.769272 ATGTTTTTCATGGTAAGTTGTGTTG 57.231 32.000 0.00 0.00 35.19 3.33
588 883 6.102663 TGTTTTTCATGGTAAGTTGTGTTGG 58.897 36.000 0.00 0.00 0.00 3.77
589 884 4.314740 TTTCATGGTAAGTTGTGTTGGC 57.685 40.909 0.00 0.00 0.00 4.52
590 885 2.235016 TCATGGTAAGTTGTGTTGGCC 58.765 47.619 0.00 0.00 0.00 5.36
591 886 1.068610 CATGGTAAGTTGTGTTGGCCG 60.069 52.381 0.00 0.00 0.00 6.13
592 887 0.180642 TGGTAAGTTGTGTTGGCCGA 59.819 50.000 0.00 0.00 0.00 5.54
593 888 0.872388 GGTAAGTTGTGTTGGCCGAG 59.128 55.000 0.00 0.00 0.00 4.63
594 889 0.872388 GTAAGTTGTGTTGGCCGAGG 59.128 55.000 0.00 0.00 0.00 4.63
595 890 0.759959 TAAGTTGTGTTGGCCGAGGA 59.240 50.000 0.00 0.00 0.00 3.71
596 891 0.110486 AAGTTGTGTTGGCCGAGGAT 59.890 50.000 0.00 0.00 0.00 3.24
597 892 0.606401 AGTTGTGTTGGCCGAGGATG 60.606 55.000 0.00 0.00 0.00 3.51
598 893 0.605319 GTTGTGTTGGCCGAGGATGA 60.605 55.000 0.00 0.00 0.00 2.92
599 894 0.109532 TTGTGTTGGCCGAGGATGAA 59.890 50.000 0.00 0.00 0.00 2.57
600 895 0.109532 TGTGTTGGCCGAGGATGAAA 59.890 50.000 0.00 0.00 0.00 2.69
601 896 0.804989 GTGTTGGCCGAGGATGAAAG 59.195 55.000 0.00 0.00 0.00 2.62
602 897 0.400213 TGTTGGCCGAGGATGAAAGT 59.600 50.000 0.00 0.00 0.00 2.66
603 898 1.202879 TGTTGGCCGAGGATGAAAGTT 60.203 47.619 0.00 0.00 0.00 2.66
604 899 1.200020 GTTGGCCGAGGATGAAAGTTG 59.800 52.381 0.00 0.00 0.00 3.16
605 900 0.322456 TGGCCGAGGATGAAAGTTGG 60.322 55.000 0.00 0.00 0.00 3.77
606 901 1.657751 GGCCGAGGATGAAAGTTGGC 61.658 60.000 0.00 0.00 40.25 4.52
607 902 1.982073 GCCGAGGATGAAAGTTGGCG 61.982 60.000 0.00 0.00 0.00 5.69
608 903 0.391130 CCGAGGATGAAAGTTGGCGA 60.391 55.000 0.00 0.00 0.00 5.54
609 904 1.002366 CGAGGATGAAAGTTGGCGAG 58.998 55.000 0.00 0.00 0.00 5.03
610 905 0.729690 GAGGATGAAAGTTGGCGAGC 59.270 55.000 0.00 0.00 0.00 5.03
611 906 0.036732 AGGATGAAAGTTGGCGAGCA 59.963 50.000 0.00 0.00 0.00 4.26
612 907 1.098050 GGATGAAAGTTGGCGAGCAT 58.902 50.000 0.00 0.00 0.00 3.79
613 908 1.202222 GGATGAAAGTTGGCGAGCATG 60.202 52.381 0.00 0.00 0.00 4.06
614 909 0.813184 ATGAAAGTTGGCGAGCATGG 59.187 50.000 0.00 0.00 0.00 3.66
615 910 1.153958 GAAAGTTGGCGAGCATGGC 60.154 57.895 0.00 0.00 40.04 4.40
616 911 1.865788 GAAAGTTGGCGAGCATGGCA 61.866 55.000 0.15 0.15 43.90 4.92
620 915 2.829914 TGGCGAGCATGGCAATCC 60.830 61.111 1.88 0.00 43.90 3.01
621 916 3.957535 GGCGAGCATGGCAATCCG 61.958 66.667 0.00 0.00 43.90 4.18
622 917 3.204827 GCGAGCATGGCAATCCGT 61.205 61.111 0.00 0.00 40.68 4.69
623 918 3.017323 CGAGCATGGCAATCCGTC 58.983 61.111 0.00 0.00 34.14 4.79
624 919 1.522355 CGAGCATGGCAATCCGTCT 60.522 57.895 0.00 0.00 34.14 4.18
625 920 1.091771 CGAGCATGGCAATCCGTCTT 61.092 55.000 0.00 0.00 34.14 3.01
626 921 1.806247 CGAGCATGGCAATCCGTCTTA 60.806 52.381 0.00 0.00 34.14 2.10
627 922 1.869767 GAGCATGGCAATCCGTCTTAG 59.130 52.381 0.00 0.00 34.14 2.18
628 923 1.210478 AGCATGGCAATCCGTCTTAGT 59.790 47.619 0.00 0.00 34.14 2.24
629 924 2.017049 GCATGGCAATCCGTCTTAGTT 58.983 47.619 0.00 0.00 34.14 2.24
630 925 2.032178 GCATGGCAATCCGTCTTAGTTC 59.968 50.000 0.00 0.00 34.14 3.01
631 926 3.270027 CATGGCAATCCGTCTTAGTTCA 58.730 45.455 0.00 0.00 34.14 3.18
632 927 3.627395 TGGCAATCCGTCTTAGTTCAT 57.373 42.857 0.00 0.00 34.14 2.57
633 928 4.746535 TGGCAATCCGTCTTAGTTCATA 57.253 40.909 0.00 0.00 34.14 2.15
634 929 5.290493 TGGCAATCCGTCTTAGTTCATAT 57.710 39.130 0.00 0.00 34.14 1.78
635 930 5.680619 TGGCAATCCGTCTTAGTTCATATT 58.319 37.500 0.00 0.00 34.14 1.28
636 931 6.119536 TGGCAATCCGTCTTAGTTCATATTT 58.880 36.000 0.00 0.00 34.14 1.40
637 932 6.601613 TGGCAATCCGTCTTAGTTCATATTTT 59.398 34.615 0.00 0.00 34.14 1.82
638 933 7.771361 TGGCAATCCGTCTTAGTTCATATTTTA 59.229 33.333 0.00 0.00 34.14 1.52
639 934 8.283291 GGCAATCCGTCTTAGTTCATATTTTAG 58.717 37.037 0.00 0.00 0.00 1.85
640 935 7.798982 GCAATCCGTCTTAGTTCATATTTTAGC 59.201 37.037 0.00 0.00 0.00 3.09
641 936 7.964604 ATCCGTCTTAGTTCATATTTTAGCC 57.035 36.000 0.00 0.00 0.00 3.93
642 937 7.120923 TCCGTCTTAGTTCATATTTTAGCCT 57.879 36.000 0.00 0.00 0.00 4.58
643 938 7.562135 TCCGTCTTAGTTCATATTTTAGCCTT 58.438 34.615 0.00 0.00 0.00 4.35
644 939 8.044908 TCCGTCTTAGTTCATATTTTAGCCTTT 58.955 33.333 0.00 0.00 0.00 3.11
645 940 8.336080 CCGTCTTAGTTCATATTTTAGCCTTTC 58.664 37.037 0.00 0.00 0.00 2.62
646 941 8.336080 CGTCTTAGTTCATATTTTAGCCTTTCC 58.664 37.037 0.00 0.00 0.00 3.13
669 964 5.049474 CCATTAAACTTTTTGAAGCCTTGCC 60.049 40.000 0.00 0.00 0.00 4.52
679 974 0.924823 AAGCCTTGCCATCTCCAGAT 59.075 50.000 0.00 0.00 34.56 2.90
740 1052 4.090930 CCGAATTTGAATTTGCTGCTGAAG 59.909 41.667 0.00 0.00 0.00 3.02
810 1125 2.382519 GGAACGCGCATAGTAGTACTG 58.617 52.381 13.29 0.00 0.00 2.74
815 1130 3.002042 ACGCGCATAGTAGTACTGTACTG 59.998 47.826 26.45 13.64 39.81 2.74
816 1131 3.606384 CGCGCATAGTAGTACTGTACTGG 60.606 52.174 26.45 13.39 39.81 4.00
817 1132 3.562973 GCGCATAGTAGTACTGTACTGGA 59.437 47.826 26.45 13.77 39.81 3.86
819 1134 4.815308 CGCATAGTAGTACTGTACTGGACT 59.185 45.833 26.45 23.40 39.81 3.85
820 1135 5.050227 CGCATAGTAGTACTGTACTGGACTC 60.050 48.000 26.45 12.15 39.81 3.36
821 1136 5.821470 GCATAGTAGTACTGTACTGGACTCA 59.179 44.000 26.45 13.42 39.81 3.41
822 1137 6.318144 GCATAGTAGTACTGTACTGGACTCAA 59.682 42.308 26.45 11.72 39.81 3.02
823 1138 7.679164 GCATAGTAGTACTGTACTGGACTCAAC 60.679 44.444 26.45 13.90 39.81 3.18
824 1139 5.878627 AGTAGTACTGTACTGGACTCAACT 58.121 41.667 26.45 15.74 39.81 3.16
842 1157 3.291101 TACTCAACCTCCGCCGTGC 62.291 63.158 0.00 0.00 0.00 5.34
912 1227 1.520564 CCGATTCCGATTCCGTGCA 60.521 57.895 0.00 0.00 38.22 4.57
1020 1347 0.321671 TGGCCTTCTCCTCTTTCACG 59.678 55.000 3.32 0.00 0.00 4.35
1222 1585 4.504916 CTGCTCGCCCAGTCTCGG 62.505 72.222 0.00 0.00 0.00 4.63
1247 1610 1.922135 GACGGTGATGCGCCATGTTT 61.922 55.000 4.18 0.00 32.88 2.83
1384 1747 1.148048 GCCCAAGAGAGAGATGGCC 59.852 63.158 0.00 0.00 32.74 5.36
1416 1779 6.871492 TCTCGAACTGTAATTTGCTTGTGATA 59.129 34.615 0.00 0.00 0.00 2.15
1531 1894 2.301577 ACATCTTGCCGTAAGCTCTC 57.698 50.000 0.00 0.00 44.23 3.20
1534 1897 1.446099 CTTGCCGTAAGCTCTCGCA 60.446 57.895 5.20 0.01 44.23 5.10
1539 1902 1.413382 CCGTAAGCTCTCGCATCATC 58.587 55.000 5.20 0.00 39.10 2.92
1550 1913 1.434622 CGCATCATCAGCTTTCGCCT 61.435 55.000 0.00 0.00 36.60 5.52
1554 1917 1.586422 TCATCAGCTTTCGCCTATGC 58.414 50.000 0.00 0.00 36.60 3.14
1585 1948 2.148916 TGTTCCAGTACAAGTGCTCG 57.851 50.000 0.00 0.00 0.00 5.03
1656 2019 3.412386 AGTCCATGCTGTTCCTTAACAC 58.588 45.455 0.00 0.00 40.69 3.32
1723 2090 3.933332 GTCTAGTACAATTGTGCTGTCCC 59.067 47.826 31.81 16.73 41.09 4.46
1750 2125 6.225981 ACATAAAATCCAGCAAAAGGGATC 57.774 37.500 0.00 0.00 43.01 3.36
1759 2134 1.672881 GCAAAAGGGATCGTCATCTGG 59.327 52.381 0.00 0.00 0.00 3.86
1816 2191 0.808755 GTGTTGAAATTCCCGCGGAT 59.191 50.000 30.73 10.80 0.00 4.18
1831 2212 2.845967 CGCGGATTCAAATGTAAAGTGC 59.154 45.455 0.00 0.00 0.00 4.40
1880 2264 3.004752 GGTGTAATGCTTCCACCAGAT 57.995 47.619 13.45 0.00 46.33 2.90
1914 2298 8.267894 ACAGTACTGGTGCTCTTAATTTCATAT 58.732 33.333 26.12 0.00 34.19 1.78
1915 2299 9.113838 CAGTACTGGTGCTCTTAATTTCATATT 57.886 33.333 15.49 0.00 0.00 1.28
2110 2678 9.561069 TTAGATAATCTGGCTGAAATAAGAACC 57.439 33.333 0.00 0.00 0.00 3.62
2194 2834 9.845740 AGCTAACATTATTGGTTATCATGTACA 57.154 29.630 0.00 0.00 31.43 2.90
2290 2936 4.133078 CAGCTTTTGAGACTTGAGAACCT 58.867 43.478 0.00 0.00 0.00 3.50
2332 2979 5.893824 TGGTCATCATAGAGACTTAAGCTCA 59.106 40.000 21.30 12.17 34.85 4.26
2334 2981 7.093333 TGGTCATCATAGAGACTTAAGCTCAAA 60.093 37.037 21.30 13.21 34.85 2.69
2414 3076 4.613944 TGTGTTCTTACAGGTACGAGTTG 58.386 43.478 0.00 0.00 34.24 3.16
2553 3215 4.568359 CGTTACCAGATGATTCAGAACCTG 59.432 45.833 0.00 0.00 0.00 4.00
2785 3447 5.408356 GGGTGCCTGTATATGTAGTAATCG 58.592 45.833 0.00 0.00 0.00 3.34
2888 3550 4.934001 ACTGACATGTAAGCTGATGTGAAG 59.066 41.667 10.40 9.76 32.85 3.02
2946 3609 1.869342 CGCCCCAAAAAGCTTGTCTTG 60.869 52.381 0.00 4.49 34.67 3.02
2967 3630 3.646162 TGGATTTGCCTAGATACGGATGT 59.354 43.478 0.00 0.00 37.63 3.06
2968 3631 4.836175 TGGATTTGCCTAGATACGGATGTA 59.164 41.667 0.00 0.00 37.63 2.29
2969 3632 5.483937 TGGATTTGCCTAGATACGGATGTAT 59.516 40.000 0.00 0.00 39.79 2.29
2970 3633 6.351033 TGGATTTGCCTAGATACGGATGTATC 60.351 42.308 7.22 7.22 45.71 2.24
3045 3708 4.079958 AGCTTTTTGGGACGGAGGTAATAT 60.080 41.667 0.00 0.00 0.00 1.28
3046 3709 4.275196 GCTTTTTGGGACGGAGGTAATATC 59.725 45.833 0.00 0.00 0.00 1.63
3118 3908 0.667993 CTTTCTGTTTTCGCTGCCCA 59.332 50.000 0.00 0.00 0.00 5.36
3119 3909 0.667993 TTTCTGTTTTCGCTGCCCAG 59.332 50.000 0.00 0.00 0.00 4.45
3158 3948 1.251251 ACTGGAAATTCTGCTGCACC 58.749 50.000 0.00 0.00 0.00 5.01
3210 4000 8.041323 TGATTTTACAGGGATTTCTAGTCTCAC 58.959 37.037 0.00 0.00 0.00 3.51
3321 4111 7.194607 TGACATCTCAAACTGAAATCAAGAC 57.805 36.000 0.00 0.00 0.00 3.01
3332 4122 2.887151 AATCAAGACCCCAAGACTGG 57.113 50.000 0.00 0.00 43.10 4.00
3340 4130 3.028130 GACCCCAAGACTGGAAAACAAA 58.972 45.455 0.00 0.00 46.92 2.83
3369 4159 7.836017 GACAAATTGATGCGAAATATTTGTTCG 59.164 33.333 5.17 4.53 44.75 3.95
3398 4188 6.875972 AAAGTCAATACCATAGGACTGTCT 57.124 37.500 7.85 0.00 40.29 3.41
3399 4189 5.860941 AGTCAATACCATAGGACTGTCTG 57.139 43.478 7.85 0.00 39.04 3.51
3402 4192 7.069986 AGTCAATACCATAGGACTGTCTGTAT 58.930 38.462 7.85 2.96 39.04 2.29
3403 4193 7.014711 AGTCAATACCATAGGACTGTCTGTATG 59.985 40.741 16.99 16.99 39.04 2.39
3404 4194 5.730296 ATACCATAGGACTGTCTGTATGC 57.270 43.478 17.87 0.05 0.00 3.14
3406 4196 4.033709 ACCATAGGACTGTCTGTATGCTT 58.966 43.478 17.87 9.37 0.00 3.91
3407 4197 4.141846 ACCATAGGACTGTCTGTATGCTTG 60.142 45.833 17.87 11.24 0.00 4.01
3408 4198 4.100035 CCATAGGACTGTCTGTATGCTTGA 59.900 45.833 17.87 0.00 0.00 3.02
3409 4199 3.883830 AGGACTGTCTGTATGCTTGAG 57.116 47.619 7.85 0.00 0.00 3.02
3411 4201 1.923204 GACTGTCTGTATGCTTGAGCG 59.077 52.381 0.00 0.00 45.83 5.03
3412 4202 0.649475 CTGTCTGTATGCTTGAGCGC 59.351 55.000 0.00 0.00 45.83 5.92
3414 4204 0.740868 GTCTGTATGCTTGAGCGCCA 60.741 55.000 2.29 0.00 45.83 5.69
3425 4266 1.454111 GAGCGCCAGAGGGAGTAGA 60.454 63.158 2.29 0.00 36.19 2.59
3445 4286 1.073923 ACAGGAAGACGCAGGGAAATT 59.926 47.619 0.00 0.00 0.00 1.82
3446 4287 2.162681 CAGGAAGACGCAGGGAAATTT 58.837 47.619 0.00 0.00 0.00 1.82
3448 4289 2.040412 AGGAAGACGCAGGGAAATTTCT 59.960 45.455 17.42 0.00 0.00 2.52
3449 4290 3.263425 AGGAAGACGCAGGGAAATTTCTA 59.737 43.478 17.42 0.00 0.00 2.10
3450 4291 3.623510 GGAAGACGCAGGGAAATTTCTAG 59.376 47.826 17.42 8.95 0.00 2.43
3452 4293 2.092914 AGACGCAGGGAAATTTCTAGGG 60.093 50.000 17.42 16.05 0.00 3.53
3497 5221 2.285442 GGGGGTGCTGGTAGAGGT 60.285 66.667 0.00 0.00 0.00 3.85
3498 5222 2.670148 GGGGGTGCTGGTAGAGGTG 61.670 68.421 0.00 0.00 0.00 4.00
3499 5223 1.918800 GGGGTGCTGGTAGAGGTGT 60.919 63.158 0.00 0.00 0.00 4.16
3500 5224 1.296715 GGGTGCTGGTAGAGGTGTG 59.703 63.158 0.00 0.00 0.00 3.82
3501 5225 1.376037 GGTGCTGGTAGAGGTGTGC 60.376 63.158 0.00 0.00 0.00 4.57
3502 5226 1.371183 GTGCTGGTAGAGGTGTGCA 59.629 57.895 0.00 0.00 0.00 4.57
3503 5227 0.250295 GTGCTGGTAGAGGTGTGCAA 60.250 55.000 0.00 0.00 32.10 4.08
3504 5228 0.035317 TGCTGGTAGAGGTGTGCAAG 59.965 55.000 0.00 0.00 0.00 4.01
3505 5229 1.301677 GCTGGTAGAGGTGTGCAAGC 61.302 60.000 0.00 0.00 0.00 4.01
3506 5230 0.322975 CTGGTAGAGGTGTGCAAGCT 59.677 55.000 0.00 0.00 40.07 3.74
3507 5231 0.035317 TGGTAGAGGTGTGCAAGCTG 59.965 55.000 5.52 0.00 36.52 4.24
3508 5232 0.321671 GGTAGAGGTGTGCAAGCTGA 59.678 55.000 5.52 0.00 36.52 4.26
3509 5233 1.065854 GGTAGAGGTGTGCAAGCTGAT 60.066 52.381 5.52 0.00 36.52 2.90
3510 5234 2.005451 GTAGAGGTGTGCAAGCTGATG 58.995 52.381 5.52 0.00 36.52 3.07
3511 5235 0.689055 AGAGGTGTGCAAGCTGATGA 59.311 50.000 5.52 0.00 36.52 2.92
3512 5236 1.281287 AGAGGTGTGCAAGCTGATGAT 59.719 47.619 5.52 0.00 36.52 2.45
3513 5237 2.502947 AGAGGTGTGCAAGCTGATGATA 59.497 45.455 5.52 0.00 36.52 2.15
3514 5238 2.611292 GAGGTGTGCAAGCTGATGATAC 59.389 50.000 5.52 0.00 36.52 2.24
3515 5239 2.026915 AGGTGTGCAAGCTGATGATACA 60.027 45.455 0.00 0.00 34.56 2.29
3516 5240 2.096496 GGTGTGCAAGCTGATGATACAC 59.904 50.000 13.62 13.62 38.30 2.90
3517 5241 3.005554 GTGTGCAAGCTGATGATACACT 58.994 45.455 14.27 0.00 37.16 3.55
3518 5242 4.183865 GTGTGCAAGCTGATGATACACTA 58.816 43.478 14.27 0.00 37.16 2.74
3519 5243 4.033358 GTGTGCAAGCTGATGATACACTAC 59.967 45.833 14.27 2.72 37.16 2.73
3520 5244 3.243877 GTGCAAGCTGATGATACACTACG 59.756 47.826 0.00 0.00 0.00 3.51
3521 5245 2.797156 GCAAGCTGATGATACACTACGG 59.203 50.000 0.00 0.00 0.00 4.02
3522 5246 3.738281 GCAAGCTGATGATACACTACGGT 60.738 47.826 0.00 0.00 0.00 4.83
3560 5284 2.684881 CGACCAAAATAGGAGCAGCAAT 59.315 45.455 0.00 0.00 0.00 3.56
3561 5285 3.488047 CGACCAAAATAGGAGCAGCAATG 60.488 47.826 0.00 0.00 0.00 2.82
3562 5286 3.696051 GACCAAAATAGGAGCAGCAATGA 59.304 43.478 0.00 0.00 0.00 2.57
3563 5287 3.445096 ACCAAAATAGGAGCAGCAATGAC 59.555 43.478 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
270 271 0.888619 TGTAACTCTGAGCCTGACGG 59.111 55.000 4.19 0.00 0.00 4.79
291 293 5.962433 ACGAAATCGATTCTAGTCCAAAGA 58.038 37.500 11.83 0.00 43.02 2.52
299 301 7.972623 ACTTTACTGACGAAATCGATTCTAG 57.027 36.000 11.83 8.35 43.02 2.43
300 302 8.752766 AAACTTTACTGACGAAATCGATTCTA 57.247 30.769 11.83 0.00 43.02 2.10
301 303 7.653767 AAACTTTACTGACGAAATCGATTCT 57.346 32.000 11.83 1.78 43.02 2.40
302 304 8.007716 TCAAAACTTTACTGACGAAATCGATTC 58.992 33.333 11.83 4.45 43.02 2.52
303 305 7.797123 GTCAAAACTTTACTGACGAAATCGATT 59.203 33.333 10.16 4.39 43.02 3.34
304 306 7.042321 TGTCAAAACTTTACTGACGAAATCGAT 60.042 33.333 10.16 0.00 41.94 3.59
313 325 7.078228 CCAAGCTATGTCAAAACTTTACTGAC 58.922 38.462 0.00 0.00 39.93 3.51
315 327 6.970484 ACCAAGCTATGTCAAAACTTTACTG 58.030 36.000 0.00 0.00 0.00 2.74
316 328 7.937394 AGTACCAAGCTATGTCAAAACTTTACT 59.063 33.333 0.00 0.00 0.00 2.24
322 334 4.760204 ACCAGTACCAAGCTATGTCAAAAC 59.240 41.667 0.00 0.00 0.00 2.43
344 356 1.143969 CCGGTGTTCGATCGCCTTAC 61.144 60.000 20.72 6.65 42.43 2.34
351 363 0.801067 CTTCCGTCCGGTGTTCGATC 60.801 60.000 0.00 0.00 42.43 3.69
355 367 1.475682 ACTATCTTCCGTCCGGTGTTC 59.524 52.381 0.00 0.00 36.47 3.18
362 374 5.298777 ACTGTACATGTACTATCTTCCGTCC 59.701 44.000 30.69 6.04 37.00 4.79
363 375 6.374565 ACTGTACATGTACTATCTTCCGTC 57.625 41.667 30.69 6.22 37.00 4.79
372 384 8.501580 GCAGTCGATATAACTGTACATGTACTA 58.498 37.037 30.69 18.47 44.79 1.82
373 385 7.361127 GCAGTCGATATAACTGTACATGTACT 58.639 38.462 30.69 17.06 44.79 2.73
378 390 4.021368 GGGGCAGTCGATATAACTGTACAT 60.021 45.833 15.53 0.00 44.79 2.29
418 430 0.463620 TTGGTTGCCTTTTCTGTGCC 59.536 50.000 0.00 0.00 0.00 5.01
438 450 7.417456 GGTGTTTCCCTTATTTCAAGTTGAAGT 60.417 37.037 17.36 16.99 37.70 3.01
439 451 6.923508 GGTGTTTCCCTTATTTCAAGTTGAAG 59.076 38.462 17.36 6.83 37.70 3.02
440 452 6.609616 AGGTGTTTCCCTTATTTCAAGTTGAA 59.390 34.615 14.35 14.35 36.75 2.69
442 454 6.405278 AGGTGTTTCCCTTATTTCAAGTTG 57.595 37.500 0.00 0.00 36.75 3.16
444 456 7.523415 TCTAAGGTGTTTCCCTTATTTCAAGT 58.477 34.615 0.44 0.00 44.15 3.16
445 457 7.883311 TCTCTAAGGTGTTTCCCTTATTTCAAG 59.117 37.037 0.44 0.00 44.15 3.02
446 458 7.751646 TCTCTAAGGTGTTTCCCTTATTTCAA 58.248 34.615 0.44 0.00 44.15 2.69
447 459 7.324388 TCTCTAAGGTGTTTCCCTTATTTCA 57.676 36.000 0.44 0.00 44.15 2.69
448 460 7.283354 CCATCTCTAAGGTGTTTCCCTTATTTC 59.717 40.741 0.44 0.00 44.15 2.17
449 461 7.119387 CCATCTCTAAGGTGTTTCCCTTATTT 58.881 38.462 0.44 0.00 44.15 1.40
451 463 5.398012 GCCATCTCTAAGGTGTTTCCCTTAT 60.398 44.000 0.44 0.00 44.15 1.73
452 464 4.080526 GCCATCTCTAAGGTGTTTCCCTTA 60.081 45.833 0.00 0.00 43.09 2.69
457 469 2.680339 GCAGCCATCTCTAAGGTGTTTC 59.320 50.000 0.00 0.00 0.00 2.78
460 472 0.176680 CGCAGCCATCTCTAAGGTGT 59.823 55.000 0.00 0.00 0.00 4.16
466 478 1.133761 AGTACCTCGCAGCCATCTCTA 60.134 52.381 0.00 0.00 0.00 2.43
468 480 1.268352 CTAGTACCTCGCAGCCATCTC 59.732 57.143 0.00 0.00 0.00 2.75
487 499 7.393515 GGTCCAGTCCAAAGTTAAATATGAACT 59.606 37.037 0.00 0.00 38.81 3.01
488 500 7.393515 AGGTCCAGTCCAAAGTTAAATATGAAC 59.606 37.037 0.00 0.00 0.00 3.18
489 501 7.393234 CAGGTCCAGTCCAAAGTTAAATATGAA 59.607 37.037 0.00 0.00 0.00 2.57
491 503 6.095440 CCAGGTCCAGTCCAAAGTTAAATATG 59.905 42.308 0.00 0.00 0.00 1.78
492 504 6.011981 TCCAGGTCCAGTCCAAAGTTAAATAT 60.012 38.462 0.00 0.00 0.00 1.28
504 799 2.103153 TGGATATCCAGGTCCAGTCC 57.897 55.000 20.98 0.00 42.01 3.85
514 809 5.715439 ATTTGACCTTCACTGGATATCCA 57.285 39.130 23.17 23.17 45.30 3.41
515 810 7.410120 AAAATTTGACCTTCACTGGATATCC 57.590 36.000 15.39 15.39 0.00 2.59
517 812 8.971073 CCTAAAAATTTGACCTTCACTGGATAT 58.029 33.333 0.00 0.00 0.00 1.63
518 813 7.093945 GCCTAAAAATTTGACCTTCACTGGATA 60.094 37.037 0.00 0.00 0.00 2.59
519 814 6.295292 GCCTAAAAATTTGACCTTCACTGGAT 60.295 38.462 0.00 0.00 0.00 3.41
520 815 5.010617 GCCTAAAAATTTGACCTTCACTGGA 59.989 40.000 0.00 0.00 0.00 3.86
521 816 5.221422 TGCCTAAAAATTTGACCTTCACTGG 60.221 40.000 0.00 0.00 0.00 4.00
522 817 5.841810 TGCCTAAAAATTTGACCTTCACTG 58.158 37.500 0.00 0.00 0.00 3.66
523 818 6.458210 CATGCCTAAAAATTTGACCTTCACT 58.542 36.000 0.00 0.00 0.00 3.41
524 819 5.639082 CCATGCCTAAAAATTTGACCTTCAC 59.361 40.000 0.00 0.00 0.00 3.18
525 820 5.792741 CCATGCCTAAAAATTTGACCTTCA 58.207 37.500 0.00 0.00 0.00 3.02
526 821 4.631377 GCCATGCCTAAAAATTTGACCTTC 59.369 41.667 0.00 0.00 0.00 3.46
527 822 4.578871 GCCATGCCTAAAAATTTGACCTT 58.421 39.130 0.00 0.00 0.00 3.50
528 823 3.368323 CGCCATGCCTAAAAATTTGACCT 60.368 43.478 0.00 0.00 0.00 3.85
529 824 2.929398 CGCCATGCCTAAAAATTTGACC 59.071 45.455 0.00 0.00 0.00 4.02
530 825 3.843999 TCGCCATGCCTAAAAATTTGAC 58.156 40.909 0.00 0.00 0.00 3.18
531 826 4.527509 TTCGCCATGCCTAAAAATTTGA 57.472 36.364 0.00 0.00 0.00 2.69
532 827 4.434067 CGTTTCGCCATGCCTAAAAATTTG 60.434 41.667 0.00 0.00 0.00 2.32
533 828 3.677596 CGTTTCGCCATGCCTAAAAATTT 59.322 39.130 0.00 0.00 0.00 1.82
534 829 3.057174 TCGTTTCGCCATGCCTAAAAATT 60.057 39.130 0.00 0.00 0.00 1.82
535 830 2.490115 TCGTTTCGCCATGCCTAAAAAT 59.510 40.909 0.00 0.00 0.00 1.82
536 831 1.880675 TCGTTTCGCCATGCCTAAAAA 59.119 42.857 0.00 0.00 0.00 1.94
537 832 1.524848 TCGTTTCGCCATGCCTAAAA 58.475 45.000 0.00 0.00 0.00 1.52
538 833 1.524848 TTCGTTTCGCCATGCCTAAA 58.475 45.000 0.00 0.00 0.00 1.85
539 834 1.524848 TTTCGTTTCGCCATGCCTAA 58.475 45.000 0.00 0.00 0.00 2.69
540 835 1.198178 GTTTTCGTTTCGCCATGCCTA 59.802 47.619 0.00 0.00 0.00 3.93
541 836 0.039527 GTTTTCGTTTCGCCATGCCT 60.040 50.000 0.00 0.00 0.00 4.75
542 837 1.334288 CGTTTTCGTTTCGCCATGCC 61.334 55.000 0.00 0.00 38.65 4.40
543 838 0.384974 TCGTTTTCGTTTCGCCATGC 60.385 50.000 0.00 0.00 44.46 4.06
544 839 2.025544 TTCGTTTTCGTTTCGCCATG 57.974 45.000 0.00 0.00 44.46 3.66
545 840 2.031508 ACATTCGTTTTCGTTTCGCCAT 60.032 40.909 0.00 0.00 44.46 4.40
546 841 1.331138 ACATTCGTTTTCGTTTCGCCA 59.669 42.857 0.00 0.00 44.46 5.69
547 842 2.026915 ACATTCGTTTTCGTTTCGCC 57.973 45.000 0.00 0.00 44.46 5.54
558 853 7.221838 CACAACTTACCATGAAAAACATTCGTT 59.778 33.333 0.00 0.00 37.07 3.85
559 854 6.695278 CACAACTTACCATGAAAAACATTCGT 59.305 34.615 0.00 0.00 37.07 3.85
560 855 6.695278 ACACAACTTACCATGAAAAACATTCG 59.305 34.615 0.00 0.00 37.07 3.34
561 856 8.327429 CAACACAACTTACCATGAAAAACATTC 58.673 33.333 0.00 0.00 37.07 2.67
562 857 7.279758 CCAACACAACTTACCATGAAAAACATT 59.720 33.333 0.00 0.00 37.07 2.71
563 858 6.760770 CCAACACAACTTACCATGAAAAACAT 59.239 34.615 0.00 0.00 40.17 2.71
564 859 6.102663 CCAACACAACTTACCATGAAAAACA 58.897 36.000 0.00 0.00 0.00 2.83
565 860 5.006261 GCCAACACAACTTACCATGAAAAAC 59.994 40.000 0.00 0.00 0.00 2.43
566 861 5.112686 GCCAACACAACTTACCATGAAAAA 58.887 37.500 0.00 0.00 0.00 1.94
567 862 4.442192 GGCCAACACAACTTACCATGAAAA 60.442 41.667 0.00 0.00 0.00 2.29
568 863 3.068873 GGCCAACACAACTTACCATGAAA 59.931 43.478 0.00 0.00 0.00 2.69
569 864 2.625790 GGCCAACACAACTTACCATGAA 59.374 45.455 0.00 0.00 0.00 2.57
570 865 2.235016 GGCCAACACAACTTACCATGA 58.765 47.619 0.00 0.00 0.00 3.07
571 866 1.068610 CGGCCAACACAACTTACCATG 60.069 52.381 2.24 0.00 0.00 3.66
572 867 1.202830 TCGGCCAACACAACTTACCAT 60.203 47.619 2.24 0.00 0.00 3.55
573 868 0.180642 TCGGCCAACACAACTTACCA 59.819 50.000 2.24 0.00 0.00 3.25
574 869 0.872388 CTCGGCCAACACAACTTACC 59.128 55.000 2.24 0.00 0.00 2.85
575 870 0.872388 CCTCGGCCAACACAACTTAC 59.128 55.000 2.24 0.00 0.00 2.34
576 871 0.759959 TCCTCGGCCAACACAACTTA 59.240 50.000 2.24 0.00 0.00 2.24
577 872 0.110486 ATCCTCGGCCAACACAACTT 59.890 50.000 2.24 0.00 0.00 2.66
578 873 0.606401 CATCCTCGGCCAACACAACT 60.606 55.000 2.24 0.00 0.00 3.16
579 874 0.605319 TCATCCTCGGCCAACACAAC 60.605 55.000 2.24 0.00 0.00 3.32
580 875 0.109532 TTCATCCTCGGCCAACACAA 59.890 50.000 2.24 0.00 0.00 3.33
581 876 0.109532 TTTCATCCTCGGCCAACACA 59.890 50.000 2.24 0.00 0.00 3.72
582 877 0.804989 CTTTCATCCTCGGCCAACAC 59.195 55.000 2.24 0.00 0.00 3.32
583 878 0.400213 ACTTTCATCCTCGGCCAACA 59.600 50.000 2.24 0.00 0.00 3.33
584 879 1.200020 CAACTTTCATCCTCGGCCAAC 59.800 52.381 2.24 0.00 0.00 3.77
585 880 1.533625 CAACTTTCATCCTCGGCCAA 58.466 50.000 2.24 0.00 0.00 4.52
586 881 0.322456 CCAACTTTCATCCTCGGCCA 60.322 55.000 2.24 0.00 0.00 5.36
587 882 1.657751 GCCAACTTTCATCCTCGGCC 61.658 60.000 0.00 0.00 31.76 6.13
588 883 1.803289 GCCAACTTTCATCCTCGGC 59.197 57.895 0.00 0.00 0.00 5.54
589 884 0.391130 TCGCCAACTTTCATCCTCGG 60.391 55.000 0.00 0.00 0.00 4.63
590 885 1.002366 CTCGCCAACTTTCATCCTCG 58.998 55.000 0.00 0.00 0.00 4.63
591 886 0.729690 GCTCGCCAACTTTCATCCTC 59.270 55.000 0.00 0.00 0.00 3.71
592 887 0.036732 TGCTCGCCAACTTTCATCCT 59.963 50.000 0.00 0.00 0.00 3.24
593 888 1.098050 ATGCTCGCCAACTTTCATCC 58.902 50.000 0.00 0.00 0.00 3.51
594 889 1.202222 CCATGCTCGCCAACTTTCATC 60.202 52.381 0.00 0.00 0.00 2.92
595 890 0.813184 CCATGCTCGCCAACTTTCAT 59.187 50.000 0.00 0.00 0.00 2.57
596 891 1.865788 GCCATGCTCGCCAACTTTCA 61.866 55.000 0.00 0.00 0.00 2.69
597 892 1.153958 GCCATGCTCGCCAACTTTC 60.154 57.895 0.00 0.00 0.00 2.62
598 893 1.462731 TTGCCATGCTCGCCAACTTT 61.463 50.000 0.00 0.00 0.00 2.66
599 894 1.252904 ATTGCCATGCTCGCCAACTT 61.253 50.000 0.00 0.00 0.00 2.66
600 895 1.660560 GATTGCCATGCTCGCCAACT 61.661 55.000 0.00 0.00 0.00 3.16
601 896 1.226773 GATTGCCATGCTCGCCAAC 60.227 57.895 0.00 0.00 0.00 3.77
602 897 2.417257 GGATTGCCATGCTCGCCAA 61.417 57.895 0.00 0.00 0.00 4.52
603 898 2.829914 GGATTGCCATGCTCGCCA 60.830 61.111 0.00 0.00 0.00 5.69
604 899 3.957535 CGGATTGCCATGCTCGCC 61.958 66.667 0.00 0.00 0.00 5.54
605 900 3.173390 GACGGATTGCCATGCTCGC 62.173 63.158 0.00 0.00 0.00 5.03
606 901 1.091771 AAGACGGATTGCCATGCTCG 61.092 55.000 0.00 0.00 0.00 5.03
607 902 1.869767 CTAAGACGGATTGCCATGCTC 59.130 52.381 0.00 0.00 0.00 4.26
608 903 1.210478 ACTAAGACGGATTGCCATGCT 59.790 47.619 0.00 0.00 0.00 3.79
609 904 1.668419 ACTAAGACGGATTGCCATGC 58.332 50.000 0.00 0.00 0.00 4.06
610 905 3.270027 TGAACTAAGACGGATTGCCATG 58.730 45.455 0.00 0.00 0.00 3.66
611 906 3.627395 TGAACTAAGACGGATTGCCAT 57.373 42.857 0.00 0.00 0.00 4.40
612 907 3.627395 ATGAACTAAGACGGATTGCCA 57.373 42.857 0.00 0.00 0.00 4.92
613 908 6.619801 AAATATGAACTAAGACGGATTGCC 57.380 37.500 0.00 0.00 0.00 4.52
614 909 7.798982 GCTAAAATATGAACTAAGACGGATTGC 59.201 37.037 0.00 0.00 0.00 3.56
615 910 8.283291 GGCTAAAATATGAACTAAGACGGATTG 58.717 37.037 0.00 0.00 0.00 2.67
616 911 8.211629 AGGCTAAAATATGAACTAAGACGGATT 58.788 33.333 0.00 0.00 0.00 3.01
617 912 7.736893 AGGCTAAAATATGAACTAAGACGGAT 58.263 34.615 0.00 0.00 0.00 4.18
618 913 7.120923 AGGCTAAAATATGAACTAAGACGGA 57.879 36.000 0.00 0.00 0.00 4.69
619 914 7.787725 AAGGCTAAAATATGAACTAAGACGG 57.212 36.000 0.00 0.00 0.00 4.79
620 915 8.336080 GGAAAGGCTAAAATATGAACTAAGACG 58.664 37.037 0.00 0.00 0.00 4.18
621 916 9.174166 TGGAAAGGCTAAAATATGAACTAAGAC 57.826 33.333 0.00 0.00 0.00 3.01
622 917 9.920946 ATGGAAAGGCTAAAATATGAACTAAGA 57.079 29.630 0.00 0.00 0.00 2.10
634 929 9.892130 TCAAAAAGTTTAATGGAAAGGCTAAAA 57.108 25.926 0.00 0.00 0.00 1.52
635 930 9.892130 TTCAAAAAGTTTAATGGAAAGGCTAAA 57.108 25.926 0.00 0.00 0.00 1.85
636 931 9.541143 CTTCAAAAAGTTTAATGGAAAGGCTAA 57.459 29.630 0.00 0.00 0.00 3.09
637 932 7.655732 GCTTCAAAAAGTTTAATGGAAAGGCTA 59.344 33.333 0.00 0.00 34.79 3.93
638 933 6.483307 GCTTCAAAAAGTTTAATGGAAAGGCT 59.517 34.615 0.00 0.00 34.79 4.58
639 934 6.293407 GGCTTCAAAAAGTTTAATGGAAAGGC 60.293 38.462 10.60 10.60 34.79 4.35
640 935 6.992123 AGGCTTCAAAAAGTTTAATGGAAAGG 59.008 34.615 0.00 0.00 34.79 3.11
641 936 8.337532 CAAGGCTTCAAAAAGTTTAATGGAAAG 58.662 33.333 0.00 0.00 34.79 2.62
642 937 7.201688 GCAAGGCTTCAAAAAGTTTAATGGAAA 60.202 33.333 0.00 0.00 34.79 3.13
643 938 6.259829 GCAAGGCTTCAAAAAGTTTAATGGAA 59.740 34.615 0.00 0.00 34.79 3.53
644 939 5.757808 GCAAGGCTTCAAAAAGTTTAATGGA 59.242 36.000 0.00 0.00 34.79 3.41
645 940 5.049474 GGCAAGGCTTCAAAAAGTTTAATGG 60.049 40.000 0.00 0.00 34.79 3.16
646 941 5.526846 TGGCAAGGCTTCAAAAAGTTTAATG 59.473 36.000 0.00 0.00 34.79 1.90
650 945 3.625649 TGGCAAGGCTTCAAAAAGTTT 57.374 38.095 0.00 0.00 34.79 2.66
653 948 3.582780 GAGATGGCAAGGCTTCAAAAAG 58.417 45.455 0.00 0.00 35.47 2.27
654 949 2.299867 GGAGATGGCAAGGCTTCAAAAA 59.700 45.455 0.00 0.00 0.00 1.94
657 952 0.405198 TGGAGATGGCAAGGCTTCAA 59.595 50.000 0.00 0.00 0.00 2.69
669 964 4.133078 GCCTGGAACTAAATCTGGAGATG 58.867 47.826 0.00 0.00 34.49 2.90
679 974 6.478512 AACAAATTCAAGCCTGGAACTAAA 57.521 33.333 0.00 0.00 0.00 1.85
770 1085 2.676342 CCCCGTCTTTAAACTTCATCCG 59.324 50.000 0.00 0.00 0.00 4.18
810 1125 4.523558 AGGTTGAGTAGTTGAGTCCAGTAC 59.476 45.833 1.72 1.72 0.00 2.73
815 1130 2.094649 CGGAGGTTGAGTAGTTGAGTCC 60.095 54.545 0.00 0.00 0.00 3.85
816 1131 2.671632 GCGGAGGTTGAGTAGTTGAGTC 60.672 54.545 0.00 0.00 0.00 3.36
817 1132 1.272769 GCGGAGGTTGAGTAGTTGAGT 59.727 52.381 0.00 0.00 0.00 3.41
819 1134 0.606604 GGCGGAGGTTGAGTAGTTGA 59.393 55.000 0.00 0.00 0.00 3.18
820 1135 0.736325 CGGCGGAGGTTGAGTAGTTG 60.736 60.000 0.00 0.00 0.00 3.16
821 1136 1.183676 ACGGCGGAGGTTGAGTAGTT 61.184 55.000 13.24 0.00 0.00 2.24
822 1137 1.605738 ACGGCGGAGGTTGAGTAGT 60.606 57.895 13.24 0.00 0.00 2.73
823 1138 1.153823 CACGGCGGAGGTTGAGTAG 60.154 63.158 13.24 0.00 0.00 2.57
824 1139 2.967397 CACGGCGGAGGTTGAGTA 59.033 61.111 13.24 0.00 0.00 2.59
842 1157 0.390472 GCGAGAGAGAAACACAGGGG 60.390 60.000 0.00 0.00 0.00 4.79
845 1160 0.039074 ACGGCGAGAGAGAAACACAG 60.039 55.000 16.62 0.00 0.00 3.66
934 1249 0.528684 GATTCTTGGACGAGCTCCCG 60.529 60.000 8.47 0.00 38.49 5.14
936 1251 1.535015 CGAGATTCTTGGACGAGCTCC 60.535 57.143 8.47 0.00 39.97 4.70
946 1261 1.272781 GGACACGAGCGAGATTCTTG 58.727 55.000 0.00 0.00 0.00 3.02
948 1263 1.066303 GATGGACACGAGCGAGATTCT 59.934 52.381 0.00 0.00 0.00 2.40
1066 1417 3.157949 CTCCTCCTTCCCCTCCGC 61.158 72.222 0.00 0.00 0.00 5.54
1067 1418 2.444895 CCTCCTCCTTCCCCTCCG 60.445 72.222 0.00 0.00 0.00 4.63
1210 1573 1.153823 CAGTAACCGAGACTGGGCG 60.154 63.158 2.95 0.00 40.58 6.13
1212 1575 0.170561 CGTCAGTAACCGAGACTGGG 59.829 60.000 1.27 1.27 43.76 4.45
1213 1576 0.170561 CCGTCAGTAACCGAGACTGG 59.829 60.000 10.24 0.00 43.76 4.00
1222 1585 1.693083 GGCGCATCACCGTCAGTAAC 61.693 60.000 10.83 0.00 32.16 2.50
1384 1747 4.457834 AATTACAGTTCGAGACCTGAGG 57.542 45.455 13.65 0.00 0.00 3.86
1416 1779 0.247736 CTTAGCGAGTTCCTGCAGGT 59.752 55.000 31.58 13.82 36.34 4.00
1554 1917 1.269206 ACTGGAACAATGCACTTTGCG 60.269 47.619 0.00 0.00 43.12 4.85
1557 1920 4.644685 ACTTGTACTGGAACAATGCACTTT 59.355 37.500 0.00 0.00 38.61 2.66
1656 2019 6.054860 AGATATGGAATTACTTCGATGGGG 57.945 41.667 3.12 0.00 32.74 4.96
1723 2090 6.152661 TCCCTTTTGCTGGATTTTATGTACAG 59.847 38.462 0.33 0.00 0.00 2.74
1750 2125 9.347934 GACATAGTTTATTATCTCCAGATGACG 57.652 37.037 0.00 0.00 36.05 4.35
1786 2161 6.458206 CGGGAATTTCAACACATATACAGGTG 60.458 42.308 0.00 0.00 42.17 4.00
1816 2191 4.213270 CAGAGACCGCACTTTACATTTGAA 59.787 41.667 0.00 0.00 0.00 2.69
1831 2212 1.871080 ACTTCAGCAAACAGAGACCG 58.129 50.000 0.00 0.00 0.00 4.79
1880 2264 5.446860 AGAGCACCAGTACTGTAGCTAATA 58.553 41.667 28.60 0.00 38.38 0.98
1915 2299 0.958091 CCGGTGTGATGCCAGAAAAA 59.042 50.000 0.00 0.00 0.00 1.94
2168 2808 9.845740 TGTACATGATAACCAATAATGTTAGCT 57.154 29.630 0.00 0.00 36.38 3.32
2273 2915 6.672266 ACATCTAGGTTCTCAAGTCTCAAA 57.328 37.500 0.00 0.00 0.00 2.69
2290 2936 6.293004 TGACCACACACATCAATACATCTA 57.707 37.500 0.00 0.00 0.00 1.98
2332 2979 4.938226 GCAGGACAGAATTAGTAGCAGTTT 59.062 41.667 0.00 0.00 0.00 2.66
2334 2981 3.118592 GGCAGGACAGAATTAGTAGCAGT 60.119 47.826 0.00 0.00 0.00 4.40
2414 3076 3.428534 CCTTTTCTTTTTGTATGGCACGC 59.571 43.478 0.00 0.00 0.00 5.34
2456 3118 4.963373 TCACATCTTTTGACTTCCCGTTA 58.037 39.130 0.00 0.00 0.00 3.18
2462 3124 5.766222 ACAGCAATCACATCTTTTGACTTC 58.234 37.500 0.00 0.00 0.00 3.01
2553 3215 4.095483 CAGCAACATCAACTATGAACCCTC 59.905 45.833 0.00 0.00 39.49 4.30
2632 3294 6.596888 TCCAACTGAAAATATGAGCTCTGAAG 59.403 38.462 16.19 4.07 0.00 3.02
2707 3369 3.144506 CAGAAGCCACAATGAACACTCT 58.855 45.455 0.00 0.00 0.00 3.24
2785 3447 8.246871 CCTCAAAATTCCTAGACTCCAAAATTC 58.753 37.037 0.00 0.00 0.00 2.17
2888 3550 2.487762 TCAATTCAAGATCACGGCCAAC 59.512 45.455 2.24 0.00 0.00 3.77
2946 3609 4.273148 ACATCCGTATCTAGGCAAATCC 57.727 45.455 0.00 0.00 0.00 3.01
2969 3632 9.689976 GTATCTAACACTACGTGTCTAGATAGA 57.310 37.037 22.11 16.13 46.79 1.98
2970 3633 9.473640 TGTATCTAACACTACGTGTCTAGATAG 57.526 37.037 22.11 13.11 46.79 2.08
3025 3688 5.703730 AGATATTACCTCCGTCCCAAAAA 57.296 39.130 0.00 0.00 0.00 1.94
3045 3708 3.625764 GCCCGCACAAGAATACATAAAGA 59.374 43.478 0.00 0.00 0.00 2.52
3046 3709 3.627577 AGCCCGCACAAGAATACATAAAG 59.372 43.478 0.00 0.00 0.00 1.85
3118 3908 6.407525 CCAGTAAAGTTCCAGAATAGCTAGCT 60.408 42.308 23.12 23.12 0.00 3.32
3119 3909 5.755861 CCAGTAAAGTTCCAGAATAGCTAGC 59.244 44.000 6.62 6.62 0.00 3.42
3120 3910 7.113658 TCCAGTAAAGTTCCAGAATAGCTAG 57.886 40.000 0.00 0.00 0.00 3.42
3121 3911 7.490657 TTCCAGTAAAGTTCCAGAATAGCTA 57.509 36.000 0.00 0.00 0.00 3.32
3158 3948 3.294371 CGACGTGCATAACAAATGTTTCG 59.706 43.478 3.85 2.43 39.31 3.46
3228 4018 8.630037 GTGTGCCTTATGCCTAACTAAATTAAT 58.370 33.333 0.00 0.00 40.16 1.40
3252 4042 6.467047 GCAATTAATTTGAGATGTGACTCGTG 59.533 38.462 0.00 0.00 39.49 4.35
3321 4111 3.244181 CCATTTGTTTTCCAGTCTTGGGG 60.244 47.826 0.00 0.00 45.10 4.96
3332 4122 6.072733 CGCATCAATTTGTCCATTTGTTTTC 58.927 36.000 0.00 0.00 0.00 2.29
3340 4130 7.765360 ACAAATATTTCGCATCAATTTGTCCAT 59.235 29.630 0.00 0.00 43.61 3.41
3391 4181 1.923204 CGCTCAAGCATACAGACAGTC 59.077 52.381 2.50 0.00 42.21 3.51
3393 4183 0.649475 GCGCTCAAGCATACAGACAG 59.351 55.000 0.00 0.00 42.21 3.51
3394 4184 0.740868 GGCGCTCAAGCATACAGACA 60.741 55.000 7.64 0.00 42.21 3.41
3395 4185 0.740868 TGGCGCTCAAGCATACAGAC 60.741 55.000 7.64 0.00 42.21 3.51
3397 4187 0.460811 TCTGGCGCTCAAGCATACAG 60.461 55.000 7.64 2.40 42.21 2.74
3398 4188 0.460811 CTCTGGCGCTCAAGCATACA 60.461 55.000 7.64 0.00 42.21 2.29
3399 4189 1.156645 CCTCTGGCGCTCAAGCATAC 61.157 60.000 7.64 0.00 42.21 2.39
3402 4192 4.399395 CCCTCTGGCGCTCAAGCA 62.399 66.667 7.64 0.00 42.21 3.91
3403 4193 4.087892 TCCCTCTGGCGCTCAAGC 62.088 66.667 7.64 0.00 37.78 4.01
3404 4194 1.323271 TACTCCCTCTGGCGCTCAAG 61.323 60.000 7.64 2.86 0.00 3.02
3406 4196 1.754621 CTACTCCCTCTGGCGCTCA 60.755 63.158 7.64 2.39 0.00 4.26
3407 4197 1.454111 TCTACTCCCTCTGGCGCTC 60.454 63.158 7.64 0.00 0.00 5.03
3408 4198 1.755008 GTCTACTCCCTCTGGCGCT 60.755 63.158 7.64 0.00 0.00 5.92
3409 4199 2.010582 CTGTCTACTCCCTCTGGCGC 62.011 65.000 0.00 0.00 0.00 6.53
3411 4201 0.033011 TCCTGTCTACTCCCTCTGGC 60.033 60.000 0.00 0.00 0.00 4.85
3412 4202 2.024846 TCTTCCTGTCTACTCCCTCTGG 60.025 54.545 0.00 0.00 0.00 3.86
3414 4204 2.356330 CGTCTTCCTGTCTACTCCCTCT 60.356 54.545 0.00 0.00 0.00 3.69
3425 4266 0.693049 ATTTCCCTGCGTCTTCCTGT 59.307 50.000 0.00 0.00 0.00 4.00
3445 4286 1.895798 CGCTCATAGATGGCCCTAGAA 59.104 52.381 0.00 0.00 0.00 2.10
3446 4287 1.550327 CGCTCATAGATGGCCCTAGA 58.450 55.000 0.00 0.00 0.00 2.43
3448 4289 0.904865 CCCGCTCATAGATGGCCCTA 60.905 60.000 0.00 0.00 0.00 3.53
3449 4290 2.219875 CCCGCTCATAGATGGCCCT 61.220 63.158 0.00 0.00 0.00 5.19
3450 4291 2.348998 CCCGCTCATAGATGGCCC 59.651 66.667 0.00 0.00 0.00 5.80
3452 4293 2.177594 CTCCCCCGCTCATAGATGGC 62.178 65.000 0.00 0.00 0.00 4.40
3484 5208 0.250295 TTGCACACCTCTACCAGCAC 60.250 55.000 0.00 0.00 0.00 4.40
3497 5221 3.339253 AGTGTATCATCAGCTTGCACA 57.661 42.857 6.39 0.00 0.00 4.57
3498 5222 3.243877 CGTAGTGTATCATCAGCTTGCAC 59.756 47.826 0.00 0.00 0.00 4.57
3499 5223 3.447742 CGTAGTGTATCATCAGCTTGCA 58.552 45.455 0.00 0.00 0.00 4.08
3500 5224 2.797156 CCGTAGTGTATCATCAGCTTGC 59.203 50.000 0.00 0.00 0.00 4.01
3501 5225 3.798878 CACCGTAGTGTATCATCAGCTTG 59.201 47.826 0.00 0.00 39.30 4.01
3502 5226 4.046938 CACCGTAGTGTATCATCAGCTT 57.953 45.455 0.00 0.00 39.30 3.74
3503 5227 3.717400 CACCGTAGTGTATCATCAGCT 57.283 47.619 0.00 0.00 39.30 4.24
3515 5239 1.402456 CGAAAGCTAGCACACCGTAGT 60.402 52.381 18.83 0.00 0.00 2.73
3516 5240 1.135489 TCGAAAGCTAGCACACCGTAG 60.135 52.381 18.83 0.00 0.00 3.51
3517 5241 0.883153 TCGAAAGCTAGCACACCGTA 59.117 50.000 18.83 2.90 0.00 4.02
3518 5242 0.032952 TTCGAAAGCTAGCACACCGT 59.967 50.000 18.83 0.00 0.00 4.83
3519 5243 1.324736 GATTCGAAAGCTAGCACACCG 59.675 52.381 18.83 14.12 0.00 4.94
3520 5244 1.324736 CGATTCGAAAGCTAGCACACC 59.675 52.381 18.83 1.94 0.00 4.16
3521 5245 2.028165 GTCGATTCGAAAGCTAGCACAC 59.972 50.000 18.83 6.25 37.72 3.82
3522 5246 2.259618 GTCGATTCGAAAGCTAGCACA 58.740 47.619 18.83 0.00 37.72 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.