Multiple sequence alignment - TraesCS2D01G495900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G495900 chr2D 100.000 6070 0 0 1 6070 592623863 592617794 0.000000e+00 11210.0
1 TraesCS2D01G495900 chr2D 89.172 157 16 1 2049 2204 458155277 458155121 1.730000e-45 195.0
2 TraesCS2D01G495900 chr2A 94.602 3520 124 28 2516 6023 727175638 727172173 0.000000e+00 5387.0
3 TraesCS2D01G495900 chr2A 96.314 1655 46 7 824 2468 727177410 727175761 0.000000e+00 2704.0
4 TraesCS2D01G495900 chr2A 92.157 408 8 7 182 565 727179829 727179422 6.870000e-154 555.0
5 TraesCS2D01G495900 chr2A 92.593 135 7 3 1 133 727179964 727179831 2.230000e-44 191.0
6 TraesCS2D01G495900 chr2A 87.898 157 18 1 2049 2204 601705996 601705840 3.740000e-42 183.0
7 TraesCS2D01G495900 chr2A 95.098 102 3 2 561 662 727177491 727177392 6.300000e-35 159.0
8 TraesCS2D01G495900 chr2A 88.636 132 14 1 2068 2198 748543474 748543343 6.300000e-35 159.0
9 TraesCS2D01G495900 chr2B 93.622 3261 146 22 2779 6023 718588670 718585456 0.000000e+00 4813.0
10 TraesCS2D01G495900 chr2B 91.543 1880 80 27 824 2672 718590579 718588748 0.000000e+00 2518.0
11 TraesCS2D01G495900 chr2B 82.229 332 38 12 345 665 718590877 718590556 3.610000e-67 267.0
12 TraesCS2D01G495900 chr5D 83.086 1147 181 9 2831 3969 43962387 43963528 0.000000e+00 1031.0
13 TraesCS2D01G495900 chr5D 79.942 1037 198 9 955 1986 43960692 43961723 0.000000e+00 754.0
14 TraesCS2D01G495900 chr5A 82.185 1190 176 14 2810 3969 33929437 33930620 0.000000e+00 990.0
15 TraesCS2D01G495900 chr5A 79.749 1037 200 9 955 1986 33926963 33927994 0.000000e+00 743.0
16 TraesCS2D01G495900 chr5A 97.126 174 5 0 657 830 619094335 619094508 1.650000e-75 294.0
17 TraesCS2D01G495900 chr3A 81.290 1085 197 5 944 2025 24010590 24011671 0.000000e+00 874.0
18 TraesCS2D01G495900 chr3D 80.832 1106 201 9 2816 3916 13179906 13178807 0.000000e+00 857.0
19 TraesCS2D01G495900 chr4A 79.520 1167 225 12 2810 3969 603045309 603046468 0.000000e+00 819.0
20 TraesCS2D01G495900 chr4A 78.185 1146 223 20 2813 3949 603052301 603051174 0.000000e+00 706.0
21 TraesCS2D01G495900 chr4A 81.132 106 14 5 4511 4613 602722842 602722944 5.040000e-11 80.5
22 TraesCS2D01G495900 chr3B 80.504 1072 199 10 2816 3882 18861129 18860063 0.000000e+00 813.0
23 TraesCS2D01G495900 chr4D 79.577 1136 216 14 2855 3982 1697852 1698979 0.000000e+00 798.0
24 TraesCS2D01G495900 chr4D 80.206 1066 201 9 940 1999 1696156 1697217 0.000000e+00 791.0
25 TraesCS2D01G495900 chr4D 85.366 164 16 7 2043 2204 133486799 133486642 4.870000e-36 163.0
26 TraesCS2D01G495900 chr4B 79.265 1143 223 13 2857 3992 3713145 3712010 0.000000e+00 785.0
27 TraesCS2D01G495900 chr4B 80.071 848 161 7 1156 1999 3714553 3713710 1.860000e-174 623.0
28 TraesCS2D01G495900 chr4B 77.389 1057 219 14 940 1986 3732439 3733485 1.450000e-170 610.0
29 TraesCS2D01G495900 chr4B 97.126 174 3 2 665 836 518151242 518151069 5.950000e-75 292.0
30 TraesCS2D01G495900 chr5B 79.440 1036 205 7 955 1986 41905675 41906706 0.000000e+00 726.0
31 TraesCS2D01G495900 chr7A 97.714 175 3 1 656 830 374559947 374559774 3.560000e-77 300.0
32 TraesCS2D01G495900 chr7A 96.000 175 7 0 656 830 721921164 721920990 9.960000e-73 285.0
33 TraesCS2D01G495900 chr1B 98.810 168 2 0 663 830 29902385 29902552 3.560000e-77 300.0
34 TraesCS2D01G495900 chr1B 98.810 168 2 0 663 830 29909341 29909508 3.560000e-77 300.0
35 TraesCS2D01G495900 chr6D 98.795 166 2 0 665 830 439917250 439917415 4.600000e-76 296.0
36 TraesCS2D01G495900 chr6D 97.110 173 5 0 665 837 59423481 59423653 5.950000e-75 292.0
37 TraesCS2D01G495900 chr6D 74.699 166 42 0 4317 4482 470099808 470099973 2.350000e-09 75.0
38 TraesCS2D01G495900 chr1A 94.241 191 7 4 642 830 208903767 208903955 7.700000e-74 289.0
39 TraesCS2D01G495900 chr6B 85.976 164 20 3 2042 2203 636320639 636320477 8.090000e-39 172.0
40 TraesCS2D01G495900 chr6B 81.481 162 26 4 2042 2201 4493276 4493435 4.940000e-26 130.0
41 TraesCS2D01G495900 chr6A 81.707 164 25 4 2042 2202 798891 799052 1.370000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G495900 chr2D 592617794 592623863 6069 True 11210.000000 11210 100.000000 1 6070 1 chr2D.!!$R2 6069
1 TraesCS2D01G495900 chr2A 727172173 727179964 7791 True 1799.200000 5387 94.152800 1 6023 5 chr2A.!!$R3 6022
2 TraesCS2D01G495900 chr2B 718585456 718590877 5421 True 2532.666667 4813 89.131333 345 6023 3 chr2B.!!$R1 5678
3 TraesCS2D01G495900 chr5D 43960692 43963528 2836 False 892.500000 1031 81.514000 955 3969 2 chr5D.!!$F1 3014
4 TraesCS2D01G495900 chr5A 33926963 33930620 3657 False 866.500000 990 80.967000 955 3969 2 chr5A.!!$F2 3014
5 TraesCS2D01G495900 chr3A 24010590 24011671 1081 False 874.000000 874 81.290000 944 2025 1 chr3A.!!$F1 1081
6 TraesCS2D01G495900 chr3D 13178807 13179906 1099 True 857.000000 857 80.832000 2816 3916 1 chr3D.!!$R1 1100
7 TraesCS2D01G495900 chr4A 603045309 603046468 1159 False 819.000000 819 79.520000 2810 3969 1 chr4A.!!$F2 1159
8 TraesCS2D01G495900 chr4A 603051174 603052301 1127 True 706.000000 706 78.185000 2813 3949 1 chr4A.!!$R1 1136
9 TraesCS2D01G495900 chr3B 18860063 18861129 1066 True 813.000000 813 80.504000 2816 3882 1 chr3B.!!$R1 1066
10 TraesCS2D01G495900 chr4D 1696156 1698979 2823 False 794.500000 798 79.891500 940 3982 2 chr4D.!!$F1 3042
11 TraesCS2D01G495900 chr4B 3712010 3714553 2543 True 704.000000 785 79.668000 1156 3992 2 chr4B.!!$R2 2836
12 TraesCS2D01G495900 chr4B 3732439 3733485 1046 False 610.000000 610 77.389000 940 1986 1 chr4B.!!$F1 1046
13 TraesCS2D01G495900 chr5B 41905675 41906706 1031 False 726.000000 726 79.440000 955 1986 1 chr5B.!!$F1 1031

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
699 2662 0.035343 GCAGTGGTAAAGTCCTCCCC 60.035 60.000 0.00 0.0 0.00 4.81 F
1506 3498 0.037790 AGCTGCTCACGAAGGAAGTC 60.038 55.000 0.00 0.0 0.00 3.01 F
1977 3971 0.038599 ATGGCTGGTCATTGCTCACA 59.961 50.000 0.00 0.0 0.00 3.58 F
2060 4971 1.067915 CGTAGGGGTGCAAATTTGGTG 60.068 52.381 19.47 0.0 0.00 4.17 F
3824 7210 1.067582 GGACGCTATCTGGGTTCCG 59.932 63.158 0.00 0.0 42.14 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 3723 1.269569 GCCGGCACAAGCTAAGTTTTT 60.270 47.619 24.80 0.0 41.7 1.94 R
2832 6189 1.229428 CTGCAGGTTCGCTTTTCTCA 58.771 50.000 5.57 0.0 0.0 3.27 R
3810 7196 2.029623 TGTACTCGGAACCCAGATAGC 58.970 52.381 0.00 0.0 0.0 2.97 R
4043 7429 1.112113 TTCTATGCACGGAGGAGGAC 58.888 55.000 0.00 0.0 0.0 3.85 R
5441 8842 0.178068 AACAGGTGACGAGTGCAGTT 59.822 50.000 0.00 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 97 5.070847 AGTTTGGCTGATGTTTGGAATTCTT 59.929 36.000 5.23 0.00 0.00 2.52
117 119 2.247790 CTCCCAAACGAGCAAGTGG 58.752 57.895 0.00 0.00 0.00 4.00
129 131 3.123621 CGAGCAAGTGGTGTGTTTATCTC 59.876 47.826 0.00 0.00 0.00 2.75
133 135 4.610680 GCAAGTGGTGTGTTTATCTCGTTC 60.611 45.833 0.00 0.00 0.00 3.95
134 136 4.602340 AGTGGTGTGTTTATCTCGTTCT 57.398 40.909 0.00 0.00 0.00 3.01
135 137 4.957296 AGTGGTGTGTTTATCTCGTTCTT 58.043 39.130 0.00 0.00 0.00 2.52
136 138 4.750098 AGTGGTGTGTTTATCTCGTTCTTG 59.250 41.667 0.00 0.00 0.00 3.02
137 139 3.496884 TGGTGTGTTTATCTCGTTCTTGC 59.503 43.478 0.00 0.00 0.00 4.01
138 140 3.496884 GGTGTGTTTATCTCGTTCTTGCA 59.503 43.478 0.00 0.00 0.00 4.08
139 141 4.154195 GGTGTGTTTATCTCGTTCTTGCAT 59.846 41.667 0.00 0.00 0.00 3.96
140 142 5.082059 GTGTGTTTATCTCGTTCTTGCATG 58.918 41.667 0.00 0.00 0.00 4.06
141 143 4.091424 GTGTTTATCTCGTTCTTGCATGC 58.909 43.478 11.82 11.82 0.00 4.06
142 144 4.002982 TGTTTATCTCGTTCTTGCATGCT 58.997 39.130 20.33 0.00 0.00 3.79
143 145 4.093408 TGTTTATCTCGTTCTTGCATGCTC 59.907 41.667 20.33 3.56 0.00 4.26
144 146 2.687700 ATCTCGTTCTTGCATGCTCT 57.312 45.000 20.33 0.00 0.00 4.09
145 147 1.718396 TCTCGTTCTTGCATGCTCTG 58.282 50.000 20.33 8.92 0.00 3.35
146 148 1.273327 TCTCGTTCTTGCATGCTCTGA 59.727 47.619 20.33 11.18 0.00 3.27
147 149 2.071540 CTCGTTCTTGCATGCTCTGAA 58.928 47.619 20.33 16.25 0.00 3.02
148 150 2.481568 CTCGTTCTTGCATGCTCTGAAA 59.518 45.455 20.33 3.02 0.00 2.69
149 151 3.076621 TCGTTCTTGCATGCTCTGAAAT 58.923 40.909 20.33 0.00 0.00 2.17
150 152 3.503363 TCGTTCTTGCATGCTCTGAAATT 59.497 39.130 20.33 0.00 0.00 1.82
151 153 3.606777 CGTTCTTGCATGCTCTGAAATTG 59.393 43.478 20.33 9.53 0.00 2.32
152 154 3.226346 TCTTGCATGCTCTGAAATTGC 57.774 42.857 20.33 0.00 0.00 3.56
153 155 2.559231 TCTTGCATGCTCTGAAATTGCA 59.441 40.909 20.33 4.53 41.22 4.08
154 156 2.647529 TGCATGCTCTGAAATTGCAG 57.352 45.000 20.33 7.16 38.32 4.41
155 157 1.890489 TGCATGCTCTGAAATTGCAGT 59.110 42.857 20.33 0.00 38.32 4.40
156 158 2.297880 TGCATGCTCTGAAATTGCAGTT 59.702 40.909 20.33 0.00 38.32 3.16
157 159 3.243941 TGCATGCTCTGAAATTGCAGTTT 60.244 39.130 20.33 6.93 38.32 2.66
158 160 3.744426 GCATGCTCTGAAATTGCAGTTTT 59.256 39.130 13.35 2.56 40.18 2.43
159 161 4.143179 GCATGCTCTGAAATTGCAGTTTTC 60.143 41.667 13.35 11.96 40.18 2.29
160 162 4.652421 TGCTCTGAAATTGCAGTTTTCA 57.348 36.364 19.65 19.65 39.96 2.69
168 170 6.144854 TGAAATTGCAGTTTTCAGAGATTCG 58.855 36.000 17.91 0.00 37.97 3.34
169 171 5.947228 AATTGCAGTTTTCAGAGATTCGA 57.053 34.783 0.00 0.00 0.00 3.71
170 172 4.997905 TTGCAGTTTTCAGAGATTCGAG 57.002 40.909 0.00 0.00 0.00 4.04
171 173 4.257267 TGCAGTTTTCAGAGATTCGAGA 57.743 40.909 0.00 0.00 0.00 4.04
172 174 3.990469 TGCAGTTTTCAGAGATTCGAGAC 59.010 43.478 0.00 0.00 0.00 3.36
173 175 3.369451 GCAGTTTTCAGAGATTCGAGACC 59.631 47.826 0.00 0.00 0.00 3.85
174 176 4.560128 CAGTTTTCAGAGATTCGAGACCA 58.440 43.478 0.00 0.00 0.00 4.02
175 177 4.624882 CAGTTTTCAGAGATTCGAGACCAG 59.375 45.833 0.00 0.00 0.00 4.00
176 178 4.524714 AGTTTTCAGAGATTCGAGACCAGA 59.475 41.667 0.00 0.00 0.00 3.86
177 179 4.710423 TTTCAGAGATTCGAGACCAGAG 57.290 45.455 0.00 0.00 0.00 3.35
178 180 2.649190 TCAGAGATTCGAGACCAGAGG 58.351 52.381 0.00 0.00 0.00 3.69
179 181 2.025793 TCAGAGATTCGAGACCAGAGGT 60.026 50.000 0.00 0.00 39.44 3.85
180 182 2.098934 CAGAGATTCGAGACCAGAGGTG 59.901 54.545 0.00 0.00 35.25 4.00
285 295 4.961435 TTCATGCGCATGTTCTTTCATA 57.039 36.364 40.57 21.63 39.72 2.15
309 319 7.787623 ATCCCTCTCTTTGTGAAATTTTGAT 57.212 32.000 0.00 0.00 0.00 2.57
434 448 0.248296 CTCTGCCGTTCTACGAGCTC 60.248 60.000 2.73 2.73 46.05 4.09
435 449 0.677098 TCTGCCGTTCTACGAGCTCT 60.677 55.000 12.85 1.42 46.05 4.09
455 483 5.463061 GCTCTGCTCTCTCTAATTGATTCAC 59.537 44.000 0.00 0.00 0.00 3.18
510 538 4.770795 AGCCTTGTGGAGTATCATTGTAC 58.229 43.478 0.00 0.00 36.25 2.90
662 2625 8.450780 TTTCCTTTATCTCTAGATTATCCCCC 57.549 38.462 0.00 0.00 36.05 5.40
663 2626 7.377624 TCCTTTATCTCTAGATTATCCCCCT 57.622 40.000 0.00 0.00 36.05 4.79
664 2627 7.791087 TCCTTTATCTCTAGATTATCCCCCTT 58.209 38.462 0.00 0.00 36.05 3.95
665 2628 7.680310 TCCTTTATCTCTAGATTATCCCCCTTG 59.320 40.741 0.00 0.00 36.05 3.61
666 2629 7.680310 CCTTTATCTCTAGATTATCCCCCTTGA 59.320 40.741 0.00 0.00 36.05 3.02
667 2630 8.671987 TTTATCTCTAGATTATCCCCCTTGAG 57.328 38.462 0.00 0.00 36.05 3.02
668 2631 5.017093 TCTCTAGATTATCCCCCTTGAGG 57.983 47.826 0.00 0.00 33.01 3.86
669 2632 6.298482 TATCTCTAGATTATCCCCCTTGAGGG 60.298 46.154 9.23 9.23 44.72 4.30
670 2633 9.685070 TATCTCTAGATTATCCCCCTTGAGGGC 62.685 48.148 10.76 0.00 44.22 5.19
678 2641 4.437587 CCTTGAGGGCAGGCCTGG 62.438 72.222 33.46 12.19 36.10 4.45
689 2652 4.715523 GGCCTGGCGCAGTGGTAA 62.716 66.667 13.40 0.00 40.31 2.85
690 2653 2.671619 GCCTGGCGCAGTGGTAAA 60.672 61.111 10.83 0.00 37.47 2.01
691 2654 2.690778 GCCTGGCGCAGTGGTAAAG 61.691 63.158 10.83 0.00 37.47 1.85
692 2655 1.302511 CCTGGCGCAGTGGTAAAGT 60.303 57.895 10.83 0.00 0.00 2.66
693 2656 1.298859 CCTGGCGCAGTGGTAAAGTC 61.299 60.000 10.83 0.00 0.00 3.01
694 2657 1.298859 CTGGCGCAGTGGTAAAGTCC 61.299 60.000 10.83 0.00 0.00 3.85
695 2658 1.003718 GGCGCAGTGGTAAAGTCCT 60.004 57.895 10.83 0.00 0.00 3.85
696 2659 1.019805 GGCGCAGTGGTAAAGTCCTC 61.020 60.000 10.83 0.00 0.00 3.71
697 2660 1.019805 GCGCAGTGGTAAAGTCCTCC 61.020 60.000 0.30 0.00 0.00 4.30
698 2661 0.391263 CGCAGTGGTAAAGTCCTCCC 60.391 60.000 0.00 0.00 0.00 4.30
699 2662 0.035343 GCAGTGGTAAAGTCCTCCCC 60.035 60.000 0.00 0.00 0.00 4.81
700 2663 1.358152 CAGTGGTAAAGTCCTCCCCA 58.642 55.000 0.00 0.00 0.00 4.96
701 2664 1.003233 CAGTGGTAAAGTCCTCCCCAC 59.997 57.143 0.00 0.00 44.69 4.61
702 2665 1.359168 GTGGTAAAGTCCTCCCCACT 58.641 55.000 0.00 0.00 41.83 4.00
703 2666 1.703513 GTGGTAAAGTCCTCCCCACTT 59.296 52.381 0.00 0.00 41.83 3.16
704 2667 1.702957 TGGTAAAGTCCTCCCCACTTG 59.297 52.381 0.00 0.00 34.21 3.16
705 2668 1.703513 GGTAAAGTCCTCCCCACTTGT 59.296 52.381 0.00 0.00 34.21 3.16
706 2669 2.552373 GGTAAAGTCCTCCCCACTTGTG 60.552 54.545 0.00 0.00 34.21 3.33
707 2670 0.178990 AAAGTCCTCCCCACTTGTGC 60.179 55.000 0.00 0.00 34.21 4.57
708 2671 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
709 2672 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
710 2673 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
711 2674 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
712 2675 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
713 2676 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
714 2677 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
715 2678 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
716 2679 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
717 2680 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
718 2681 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
719 2682 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
720 2683 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
721 2684 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
722 2685 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
723 2686 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
724 2687 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
725 2688 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
726 2689 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
727 2690 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
728 2691 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
739 2702 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
740 2703 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
741 2704 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
742 2705 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
743 2706 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
744 2707 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
745 2708 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
746 2709 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
747 2710 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
748 2711 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
749 2712 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
750 2713 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
751 2714 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
752 2715 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
762 2725 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
763 2726 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
764 2727 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
765 2728 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
766 2729 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
767 2730 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
768 2731 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
769 2732 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
770 2733 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
771 2734 2.225547 TGCAGGGGTAAGACTAGGTTCT 60.226 50.000 0.00 0.00 0.00 3.01
772 2735 2.838813 GCAGGGGTAAGACTAGGTTCTT 59.161 50.000 0.00 0.00 39.28 2.52
773 2736 4.028825 GCAGGGGTAAGACTAGGTTCTTA 58.971 47.826 0.00 0.00 37.09 2.10
774 2737 4.654724 GCAGGGGTAAGACTAGGTTCTTAT 59.345 45.833 6.20 0.00 39.67 1.73
775 2738 5.837438 GCAGGGGTAAGACTAGGTTCTTATA 59.163 44.000 6.20 0.00 39.67 0.98
776 2739 6.325804 GCAGGGGTAAGACTAGGTTCTTATAA 59.674 42.308 6.20 0.00 39.67 0.98
777 2740 7.016366 GCAGGGGTAAGACTAGGTTCTTATAAT 59.984 40.741 6.20 0.00 39.67 1.28
778 2741 8.586744 CAGGGGTAAGACTAGGTTCTTATAATC 58.413 40.741 6.20 0.00 39.67 1.75
779 2742 7.733955 AGGGGTAAGACTAGGTTCTTATAATCC 59.266 40.741 6.20 3.69 39.67 3.01
780 2743 7.038445 GGGGTAAGACTAGGTTCTTATAATCCC 60.038 44.444 13.25 13.25 39.67 3.85
781 2744 7.733955 GGGTAAGACTAGGTTCTTATAATCCCT 59.266 40.741 13.86 3.92 39.67 4.20
782 2745 8.805175 GGTAAGACTAGGTTCTTATAATCCCTC 58.195 40.741 6.20 0.00 39.67 4.30
783 2746 7.859026 AAGACTAGGTTCTTATAATCCCTCC 57.141 40.000 0.00 0.00 33.89 4.30
784 2747 6.324544 AGACTAGGTTCTTATAATCCCTCCC 58.675 44.000 0.00 0.00 0.00 4.30
785 2748 5.413277 ACTAGGTTCTTATAATCCCTCCCC 58.587 45.833 0.00 0.00 0.00 4.81
786 2749 4.311208 AGGTTCTTATAATCCCTCCCCA 57.689 45.455 0.00 0.00 0.00 4.96
787 2750 4.243643 AGGTTCTTATAATCCCTCCCCAG 58.756 47.826 0.00 0.00 0.00 4.45
788 2751 4.077387 AGGTTCTTATAATCCCTCCCCAGA 60.077 45.833 0.00 0.00 0.00 3.86
789 2752 4.041815 GGTTCTTATAATCCCTCCCCAGAC 59.958 50.000 0.00 0.00 0.00 3.51
790 2753 3.870559 TCTTATAATCCCTCCCCAGACC 58.129 50.000 0.00 0.00 0.00 3.85
791 2754 2.735259 TATAATCCCTCCCCAGACCC 57.265 55.000 0.00 0.00 0.00 4.46
792 2755 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
793 2756 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
794 2757 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
796 2759 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
797 2760 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
798 2761 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
799 2762 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
800 2763 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
801 2764 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
802 2765 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
809 2772 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
810 2773 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
811 2774 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
812 2775 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
813 2776 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
814 2777 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
815 2778 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
816 2779 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
817 2780 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
818 2781 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
819 2782 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
820 2783 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
821 2784 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
822 2785 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
823 2786 1.065126 GGAGCTTCTATGCACTGGGTT 60.065 52.381 0.00 0.00 34.99 4.11
824 2787 2.619074 GGAGCTTCTATGCACTGGGTTT 60.619 50.000 0.00 0.00 34.99 3.27
825 2788 2.421424 GAGCTTCTATGCACTGGGTTTG 59.579 50.000 0.00 0.00 34.99 2.93
826 2789 2.162681 GCTTCTATGCACTGGGTTTGT 58.837 47.619 0.00 0.00 0.00 2.83
827 2790 2.162408 GCTTCTATGCACTGGGTTTGTC 59.838 50.000 0.00 0.00 0.00 3.18
913 2899 5.151389 GTGTACAAGGCTAATTTTGTTCGG 58.849 41.667 0.00 0.00 38.41 4.30
1403 3389 2.026822 AGAAGACAAATCGGCCTCATGT 60.027 45.455 0.00 0.00 0.00 3.21
1506 3498 0.037790 AGCTGCTCACGAAGGAAGTC 60.038 55.000 0.00 0.00 0.00 3.01
1507 3499 1.347817 GCTGCTCACGAAGGAAGTCG 61.348 60.000 0.00 0.00 46.54 4.18
1731 3723 1.073319 TGGGGGTGGGTCTCAAGAA 60.073 57.895 0.00 0.00 0.00 2.52
1771 3763 3.057315 GGCTCTTGCAAGTGCTATCAAAA 60.057 43.478 37.81 13.56 43.16 2.44
1933 3927 5.815581 TGAAAGCAGTAAATCCATACCACT 58.184 37.500 0.00 0.00 0.00 4.00
1977 3971 0.038599 ATGGCTGGTCATTGCTCACA 59.961 50.000 0.00 0.00 0.00 3.58
2060 4971 1.067915 CGTAGGGGTGCAAATTTGGTG 60.068 52.381 19.47 0.00 0.00 4.17
2226 5137 1.782044 CACGGGAAGTGGCAATTTTG 58.218 50.000 0.19 0.00 46.77 2.44
2229 5140 2.134346 CGGGAAGTGGCAATTTTGTTG 58.866 47.619 0.19 0.00 0.00 3.33
2230 5141 2.482839 CGGGAAGTGGCAATTTTGTTGT 60.483 45.455 0.19 0.00 0.00 3.32
2235 5146 4.943142 AGTGGCAATTTTGTTGTTGTTG 57.057 36.364 0.00 0.00 0.00 3.33
2236 5147 3.126686 AGTGGCAATTTTGTTGTTGTTGC 59.873 39.130 0.00 0.00 43.17 4.17
2237 5148 3.076621 TGGCAATTTTGTTGTTGTTGCA 58.923 36.364 10.10 0.00 45.07 4.08
2241 5163 4.093261 GCAATTTTGTTGTTGTTGCACTCT 59.907 37.500 3.76 0.00 43.33 3.24
2315 5301 5.508200 TGACCACTGTTGTTTGATTAACC 57.492 39.130 0.00 0.00 35.81 2.85
2408 5422 7.320443 ACGTAGTACGATCCACAACTATAAA 57.680 36.000 28.47 0.00 46.05 1.40
2410 5424 8.408601 ACGTAGTACGATCCACAACTATAAAAT 58.591 33.333 28.47 0.00 46.05 1.82
2414 5428 9.095065 AGTACGATCCACAACTATAAAATTGAC 57.905 33.333 0.00 0.00 0.00 3.18
2415 5429 7.316544 ACGATCCACAACTATAAAATTGACC 57.683 36.000 0.00 0.00 0.00 4.02
2416 5430 7.110155 ACGATCCACAACTATAAAATTGACCT 58.890 34.615 0.00 0.00 0.00 3.85
2417 5431 8.262227 ACGATCCACAACTATAAAATTGACCTA 58.738 33.333 0.00 0.00 0.00 3.08
2418 5432 8.548721 CGATCCACAACTATAAAATTGACCTAC 58.451 37.037 0.00 0.00 0.00 3.18
2471 5485 4.158394 AGCACTGCCTTTAAATGGTATGTG 59.842 41.667 0.00 5.36 0.00 3.21
2491 5505 6.417191 TGTGCGCCTTAAAGTTCTTAATAG 57.583 37.500 4.18 0.00 0.00 1.73
2746 6057 8.947055 ATGCTTTTGACTGACAACTTAATTTT 57.053 26.923 0.00 0.00 38.29 1.82
2748 6059 8.250332 TGCTTTTGACTGACAACTTAATTTTCT 58.750 29.630 0.00 0.00 38.29 2.52
2758 6070 9.706691 TGACAACTTAATTTTCTAGTAGACTGG 57.293 33.333 0.00 0.00 0.00 4.00
2759 6071 9.924650 GACAACTTAATTTTCTAGTAGACTGGA 57.075 33.333 0.00 0.00 0.00 3.86
2760 6072 9.708092 ACAACTTAATTTTCTAGTAGACTGGAC 57.292 33.333 0.00 0.00 33.04 4.02
2761 6073 9.930693 CAACTTAATTTTCTAGTAGACTGGACT 57.069 33.333 0.00 0.00 33.04 3.85
2832 6189 6.998074 TCAATTGTTTGAAGGTACTCATGACT 59.002 34.615 5.13 0.00 38.49 3.41
3177 6534 7.201821 GGATTTGTTCATGGAAACTCGGATATT 60.202 37.037 0.00 0.00 0.00 1.28
3372 6734 6.986424 AATAGTAAACTTCGTTTGCAAAGC 57.014 33.333 13.26 6.89 39.82 3.51
3417 6779 6.041865 AGACTAATGGAGTGGAATCAGATGAG 59.958 42.308 0.00 0.00 39.06 2.90
3453 6815 9.160496 AGAAGTTTACAAGAGCAAATATCTCTG 57.840 33.333 0.00 0.00 40.51 3.35
3495 6857 2.262423 ACTTCAAGGTTCAGTCTGGC 57.738 50.000 0.00 0.00 0.00 4.85
3609 6971 5.473504 ACACTTGAGGTATTTGTCAATGGAC 59.526 40.000 0.00 0.00 44.57 4.02
3728 7090 7.831193 ACTTCCTGATAGCATTGTGAAGTTAAT 59.169 33.333 8.59 0.00 38.13 1.40
3810 7196 5.327091 CATGCTCTAACAAATTTGAGGACG 58.673 41.667 24.64 10.39 39.89 4.79
3824 7210 1.067582 GGACGCTATCTGGGTTCCG 59.932 63.158 0.00 0.00 42.14 4.30
3976 7362 6.716628 TCAAAAAGTGCATCTTTCTAGGATGT 59.283 34.615 12.60 0.00 44.50 3.06
4043 7429 5.674525 TGAGGAGGTGTTTAATGAGCTATG 58.325 41.667 0.00 0.00 0.00 2.23
4159 7545 3.036819 AGCTTGAGGATGCTAGTGATGA 58.963 45.455 0.00 0.00 37.81 2.92
4164 7550 5.016051 TGAGGATGCTAGTGATGAAAGAC 57.984 43.478 0.00 0.00 0.00 3.01
4178 7564 2.159254 TGAAAGACTTGGCTTGTTGCAC 60.159 45.455 0.00 0.00 45.15 4.57
4211 7597 3.497103 TGGATTATGTCAGCTCCCATG 57.503 47.619 5.14 0.00 0.00 3.66
4225 7611 1.062198 TCCCATGGCTGGAGTATCTGA 60.062 52.381 6.09 0.00 46.37 3.27
4234 7620 4.323104 GGCTGGAGTATCTGAAAGTCAACT 60.323 45.833 0.00 0.00 33.73 3.16
4275 7661 1.112315 TTGGGCCAGAATTTGTGCGT 61.112 50.000 6.23 0.00 0.00 5.24
4281 7667 0.523072 CAGAATTTGTGCGTCCCCAG 59.477 55.000 0.00 0.00 0.00 4.45
4300 7686 0.750850 GAGCCACCGTTGCTATCCTA 59.249 55.000 0.00 0.00 39.69 2.94
4301 7687 1.138266 GAGCCACCGTTGCTATCCTAA 59.862 52.381 0.00 0.00 39.69 2.69
4307 7693 2.224209 ACCGTTGCTATCCTAAATCCCG 60.224 50.000 0.00 0.00 0.00 5.14
4330 7716 0.321653 GGTGACTGCATTTCCGAGGT 60.322 55.000 0.00 0.00 0.00 3.85
4334 7720 0.537143 ACTGCATTTCCGAGGTTGCA 60.537 50.000 13.30 13.30 42.41 4.08
4372 7758 2.149973 ATTGGTGGAATTGGAGGAGC 57.850 50.000 0.00 0.00 0.00 4.70
4377 7763 1.204786 TGGAATTGGAGGAGCGGGAA 61.205 55.000 0.00 0.00 0.00 3.97
4383 7769 2.150051 GGAGGAGCGGGAATGGGAT 61.150 63.158 0.00 0.00 0.00 3.85
4399 7785 1.093159 GGATGAGGAAGTGCAAGCTG 58.907 55.000 0.00 0.00 0.00 4.24
4510 7896 0.540365 AACCTTGTGGAGCATGTGGG 60.540 55.000 0.00 0.00 37.04 4.61
4660 8046 3.890756 CTCACTAGAGGAGATGAGTGCAT 59.109 47.826 9.62 0.00 39.33 3.96
4780 8166 0.609151 CCATTTGCTGGTGGATTGCA 59.391 50.000 0.00 0.00 40.49 4.08
4807 8193 2.952310 GAGATACTTGGTTTCATGGCCC 59.048 50.000 0.00 0.00 0.00 5.80
4950 8336 3.059461 GCATTGAAACAAATGTGCAGGTG 60.059 43.478 0.00 0.00 39.33 4.00
4958 8344 8.363390 TGAAACAAATGTGCAGGTGATAATTAA 58.637 29.630 0.00 0.00 0.00 1.40
5019 8412 9.612066 AATTTTAATCTCTTTTTGCTGTTTCCA 57.388 25.926 0.00 0.00 0.00 3.53
5027 8420 7.285401 TCTCTTTTTGCTGTTTCCATCTTAACT 59.715 33.333 0.00 0.00 0.00 2.24
5035 8428 4.682860 TGTTTCCATCTTAACTTCGTCGAC 59.317 41.667 5.18 5.18 0.00 4.20
5038 8431 4.008330 TCCATCTTAACTTCGTCGACTCT 58.992 43.478 14.70 0.00 0.00 3.24
5063 8456 1.671850 CCTGCATTTCCTTGCTTGCTG 60.672 52.381 0.00 0.00 43.18 4.41
5064 8457 0.320073 TGCATTTCCTTGCTTGCTGC 60.320 50.000 0.00 0.00 43.18 5.25
5074 8467 3.826637 GCTTGCTGCAATGACCATT 57.173 47.368 16.38 0.00 42.31 3.16
5083 8479 3.881688 CTGCAATGACCATTTAGAGGAGG 59.118 47.826 0.00 0.00 0.00 4.30
5085 8481 4.133078 GCAATGACCATTTAGAGGAGGAG 58.867 47.826 0.00 0.00 0.00 3.69
5086 8482 4.133078 CAATGACCATTTAGAGGAGGAGC 58.867 47.826 0.00 0.00 0.00 4.70
5097 8493 2.343758 GAGGAGCAACTGTCCGCA 59.656 61.111 5.16 0.00 39.30 5.69
5117 8513 0.099791 GACGGAGAAGAGGAAGAGCG 59.900 60.000 0.00 0.00 0.00 5.03
5238 8639 1.880340 CTCGAGTGCCAGCGATTCC 60.880 63.158 3.62 0.00 35.81 3.01
5243 8644 1.447140 GTGCCAGCGATTCCGTGTA 60.447 57.895 0.00 0.00 38.24 2.90
5244 8645 1.017177 GTGCCAGCGATTCCGTGTAA 61.017 55.000 0.00 0.00 38.24 2.41
5270 8671 1.816074 GCATCCGTGGGAAACAACTA 58.184 50.000 0.00 0.00 34.34 2.24
5308 8709 8.044574 TCCATAACCAAGATGATGGAAAGATA 57.955 34.615 0.00 0.00 43.80 1.98
5311 8712 9.956720 CATAACCAAGATGATGGAAAGATAAAC 57.043 33.333 0.00 0.00 43.54 2.01
5321 8722 2.159379 GGAAAGATAAACTTGCTGCCGG 60.159 50.000 0.00 0.00 38.98 6.13
5346 8747 2.132762 ACAAAGGCGTCGTGTAGAAAG 58.867 47.619 0.00 0.00 0.00 2.62
5355 8756 1.343142 TCGTGTAGAAAGAGGCTTGCA 59.657 47.619 0.00 0.00 0.00 4.08
5441 8842 5.813157 TCACTCGTTGTTGTTGAAGTATGAA 59.187 36.000 0.00 0.00 0.00 2.57
5559 8960 3.316308 GTCAAGAACCTGCTGTTGTTCAT 59.684 43.478 12.74 1.66 42.57 2.57
5561 8962 3.996150 AGAACCTGCTGTTGTTCATTG 57.004 42.857 12.74 0.00 42.57 2.82
5671 9072 6.605594 TCAATGAAACCAAGTTGAGTTTAGGT 59.394 34.615 17.17 8.05 36.36 3.08
5680 9089 6.040391 CCAAGTTGAGTTTAGGTTCCATCAAA 59.960 38.462 3.87 0.00 0.00 2.69
5701 9110 2.298411 ACAACAAAACAAGGCTGCTG 57.702 45.000 0.00 0.00 0.00 4.41
5721 9130 5.221441 TGCTGCTTTATATCGCTAGAAGGAA 60.221 40.000 0.00 0.00 0.00 3.36
5722 9131 5.696724 GCTGCTTTATATCGCTAGAAGGAAA 59.303 40.000 0.00 0.00 0.00 3.13
5723 9132 6.346999 GCTGCTTTATATCGCTAGAAGGAAAC 60.347 42.308 0.00 0.00 0.00 2.78
5724 9133 6.578944 TGCTTTATATCGCTAGAAGGAAACA 58.421 36.000 0.00 0.00 0.00 2.83
5725 9134 7.217200 TGCTTTATATCGCTAGAAGGAAACAT 58.783 34.615 0.00 0.00 0.00 2.71
5726 9135 7.171508 TGCTTTATATCGCTAGAAGGAAACATG 59.828 37.037 0.00 0.00 0.00 3.21
5727 9136 7.421530 TTTATATCGCTAGAAGGAAACATGC 57.578 36.000 0.00 0.00 0.00 4.06
5728 9137 3.550437 ATCGCTAGAAGGAAACATGCT 57.450 42.857 0.00 0.00 0.00 3.79
5729 9138 4.672587 ATCGCTAGAAGGAAACATGCTA 57.327 40.909 0.00 0.00 0.00 3.49
5730 9139 4.046938 TCGCTAGAAGGAAACATGCTAG 57.953 45.455 0.00 0.00 33.46 3.42
5731 9140 3.447586 TCGCTAGAAGGAAACATGCTAGT 59.552 43.478 0.00 0.00 33.12 2.57
5732 9141 4.643334 TCGCTAGAAGGAAACATGCTAGTA 59.357 41.667 0.00 0.00 33.12 1.82
5787 9196 3.546724 TCCCAGTGATTTGTTTCGTCAA 58.453 40.909 0.00 0.00 0.00 3.18
5945 9354 2.667473 AGCCAATACACCTGTACGTC 57.333 50.000 0.00 0.00 32.72 4.34
5985 9394 6.643360 GCAGTAAATAGGAGAAACTAGCTAGC 59.357 42.308 20.91 6.62 0.00 3.42
5986 9395 7.470841 GCAGTAAATAGGAGAAACTAGCTAGCT 60.471 40.741 23.12 23.12 0.00 3.32
5989 9398 9.251792 GTAAATAGGAGAAACTAGCTAGCTTTC 57.748 37.037 24.88 25.47 0.00 2.62
6048 9457 7.849804 TTTCTGACAGCAAATAGACTATTCC 57.150 36.000 8.17 3.49 0.00 3.01
6049 9458 6.798427 TCTGACAGCAAATAGACTATTCCT 57.202 37.500 8.17 5.55 0.00 3.36
6050 9459 6.810911 TCTGACAGCAAATAGACTATTCCTC 58.189 40.000 8.17 1.66 0.00 3.71
6051 9460 6.381133 TCTGACAGCAAATAGACTATTCCTCA 59.619 38.462 8.17 4.75 0.00 3.86
6052 9461 6.946340 TGACAGCAAATAGACTATTCCTCAA 58.054 36.000 8.17 0.00 0.00 3.02
6053 9462 7.394016 TGACAGCAAATAGACTATTCCTCAAA 58.606 34.615 8.17 0.00 0.00 2.69
6054 9463 8.049117 TGACAGCAAATAGACTATTCCTCAAAT 58.951 33.333 8.17 0.00 0.00 2.32
6055 9464 9.547753 GACAGCAAATAGACTATTCCTCAAATA 57.452 33.333 8.17 0.00 0.00 1.40
6056 9465 9.905713 ACAGCAAATAGACTATTCCTCAAATAA 57.094 29.630 8.17 0.00 29.44 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 61 4.389374 TCAGCCAAACTCCAAGAAAGTAG 58.611 43.478 0.00 0.00 0.00 2.57
111 113 4.750098 AGAACGAGATAAACACACCACTTG 59.250 41.667 0.00 0.00 0.00 3.16
117 119 4.725556 TGCAAGAACGAGATAAACACAC 57.274 40.909 0.00 0.00 0.00 3.82
129 131 2.975410 TTTCAGAGCATGCAAGAACG 57.025 45.000 21.98 1.78 0.00 3.95
133 135 2.923655 CTGCAATTTCAGAGCATGCAAG 59.076 45.455 21.98 9.12 45.37 4.01
134 136 2.297880 ACTGCAATTTCAGAGCATGCAA 59.702 40.909 21.98 5.01 45.37 4.08
135 137 1.890489 ACTGCAATTTCAGAGCATGCA 59.110 42.857 21.98 0.00 44.07 3.96
136 138 2.649331 ACTGCAATTTCAGAGCATGC 57.351 45.000 10.51 10.51 37.68 4.06
137 139 4.986034 TGAAAACTGCAATTTCAGAGCATG 59.014 37.500 18.45 0.00 40.75 4.06
138 140 5.204409 TGAAAACTGCAATTTCAGAGCAT 57.796 34.783 18.45 0.00 40.75 3.79
139 141 4.652421 TGAAAACTGCAATTTCAGAGCA 57.348 36.364 18.45 0.00 40.75 4.26
144 146 6.017192 TCGAATCTCTGAAAACTGCAATTTCA 60.017 34.615 20.19 20.19 42.73 2.69
145 147 6.373779 TCGAATCTCTGAAAACTGCAATTTC 58.626 36.000 14.63 14.63 37.31 2.17
146 148 6.205464 TCTCGAATCTCTGAAAACTGCAATTT 59.795 34.615 0.00 0.00 0.00 1.82
147 149 5.702670 TCTCGAATCTCTGAAAACTGCAATT 59.297 36.000 0.00 0.00 0.00 2.32
148 150 5.121454 GTCTCGAATCTCTGAAAACTGCAAT 59.879 40.000 0.00 0.00 0.00 3.56
149 151 4.449068 GTCTCGAATCTCTGAAAACTGCAA 59.551 41.667 0.00 0.00 0.00 4.08
150 152 3.990469 GTCTCGAATCTCTGAAAACTGCA 59.010 43.478 0.00 0.00 0.00 4.41
151 153 3.369451 GGTCTCGAATCTCTGAAAACTGC 59.631 47.826 0.00 0.00 0.00 4.40
152 154 4.560128 TGGTCTCGAATCTCTGAAAACTG 58.440 43.478 0.00 0.00 0.00 3.16
153 155 4.524714 TCTGGTCTCGAATCTCTGAAAACT 59.475 41.667 0.00 0.00 0.00 2.66
154 156 4.810790 TCTGGTCTCGAATCTCTGAAAAC 58.189 43.478 0.00 0.00 0.00 2.43
155 157 4.081972 CCTCTGGTCTCGAATCTCTGAAAA 60.082 45.833 0.00 0.00 0.00 2.29
156 158 3.445450 CCTCTGGTCTCGAATCTCTGAAA 59.555 47.826 0.00 0.00 0.00 2.69
157 159 3.020274 CCTCTGGTCTCGAATCTCTGAA 58.980 50.000 0.00 0.00 0.00 3.02
158 160 2.025793 ACCTCTGGTCTCGAATCTCTGA 60.026 50.000 0.00 0.00 0.00 3.27
159 161 2.098934 CACCTCTGGTCTCGAATCTCTG 59.901 54.545 0.00 0.00 31.02 3.35
160 162 2.374184 CACCTCTGGTCTCGAATCTCT 58.626 52.381 0.00 0.00 31.02 3.10
161 163 1.407258 CCACCTCTGGTCTCGAATCTC 59.593 57.143 0.00 0.00 31.02 2.75
162 164 1.479709 CCACCTCTGGTCTCGAATCT 58.520 55.000 0.00 0.00 31.02 2.40
163 165 0.461961 CCCACCTCTGGTCTCGAATC 59.538 60.000 0.00 0.00 35.46 2.52
164 166 0.978146 CCCCACCTCTGGTCTCGAAT 60.978 60.000 0.00 0.00 35.46 3.34
165 167 1.609501 CCCCACCTCTGGTCTCGAA 60.610 63.158 0.00 0.00 35.46 3.71
166 168 2.037367 CCCCACCTCTGGTCTCGA 59.963 66.667 0.00 0.00 35.46 4.04
167 169 2.283966 ACCCCACCTCTGGTCTCG 60.284 66.667 0.00 0.00 35.46 4.04
168 170 2.294078 CCACCCCACCTCTGGTCTC 61.294 68.421 0.00 0.00 35.46 3.36
169 171 2.203998 CCACCCCACCTCTGGTCT 60.204 66.667 0.00 0.00 35.46 3.85
170 172 3.330720 CCCACCCCACCTCTGGTC 61.331 72.222 0.00 0.00 35.46 4.02
175 177 4.995058 TCACCCCCACCCCACCTC 62.995 72.222 0.00 0.00 0.00 3.85
179 181 4.865228 TTGGTCACCCCCACCCCA 62.865 66.667 0.00 0.00 33.14 4.96
180 182 3.513566 TTTGGTCACCCCCACCCC 61.514 66.667 0.00 0.00 33.14 4.95
237 239 2.433444 ATATAGGTGGGCCTGGCTAA 57.567 50.000 19.68 4.03 46.47 3.09
264 274 3.853831 ATGAAAGAACATGCGCATGAA 57.146 38.095 46.90 25.88 41.20 2.57
285 295 7.452501 TGATCAAAATTTCACAAAGAGAGGGAT 59.547 33.333 0.00 0.00 0.00 3.85
309 319 6.658816 TGAGAAACAGCCAAGCTTTATATTGA 59.341 34.615 0.00 0.00 36.40 2.57
375 389 2.093181 TCAGCTTTGCATATACGGTGGT 60.093 45.455 0.00 0.00 0.00 4.16
434 448 5.586339 TCGTGAATCAATTAGAGAGAGCAG 58.414 41.667 0.00 0.00 0.00 4.24
435 449 5.582689 TCGTGAATCAATTAGAGAGAGCA 57.417 39.130 0.00 0.00 0.00 4.26
644 2607 6.746894 CCTCAAGGGGGATAATCTAGAGATA 58.253 44.000 0.00 0.00 33.73 1.98
645 2608 5.598754 CCTCAAGGGGGATAATCTAGAGAT 58.401 45.833 0.00 0.00 36.07 2.75
646 2609 5.017093 CCTCAAGGGGGATAATCTAGAGA 57.983 47.826 0.00 0.00 0.00 3.10
661 2624 4.437587 CCAGGCCTGCCCTCAAGG 62.438 72.222 28.39 7.22 44.09 3.61
672 2635 4.715523 TTACCACTGCGCCAGGCC 62.716 66.667 5.63 0.00 42.61 5.19
673 2636 2.671619 TTTACCACTGCGCCAGGC 60.672 61.111 4.18 0.00 43.96 4.85
674 2637 1.298859 GACTTTACCACTGCGCCAGG 61.299 60.000 4.18 6.64 35.51 4.45
675 2638 1.298859 GGACTTTACCACTGCGCCAG 61.299 60.000 4.18 4.99 37.52 4.85
676 2639 1.302192 GGACTTTACCACTGCGCCA 60.302 57.895 4.18 0.00 0.00 5.69
677 2640 1.003718 AGGACTTTACCACTGCGCC 60.004 57.895 4.18 0.00 0.00 6.53
678 2641 1.019805 GGAGGACTTTACCACTGCGC 61.020 60.000 0.00 0.00 0.00 6.09
679 2642 0.391263 GGGAGGACTTTACCACTGCG 60.391 60.000 0.00 0.00 0.00 5.18
680 2643 0.035343 GGGGAGGACTTTACCACTGC 60.035 60.000 0.00 0.00 0.00 4.40
681 2644 1.003233 GTGGGGAGGACTTTACCACTG 59.997 57.143 0.00 0.00 46.12 3.66
682 2645 1.359168 GTGGGGAGGACTTTACCACT 58.641 55.000 0.00 0.00 46.12 4.00
683 2646 3.950869 GTGGGGAGGACTTTACCAC 57.049 57.895 0.00 0.00 43.98 4.16
684 2647 1.702957 CAAGTGGGGAGGACTTTACCA 59.297 52.381 0.00 0.00 31.05 3.25
685 2648 1.703513 ACAAGTGGGGAGGACTTTACC 59.296 52.381 0.00 0.00 31.05 2.85
686 2649 2.779506 CACAAGTGGGGAGGACTTTAC 58.220 52.381 0.00 0.00 31.05 2.01
687 2650 1.073284 GCACAAGTGGGGAGGACTTTA 59.927 52.381 2.00 0.00 31.05 1.85
688 2651 0.178990 GCACAAGTGGGGAGGACTTT 60.179 55.000 2.00 0.00 31.05 2.66
689 2652 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
690 2653 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
691 2654 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
692 2655 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
703 2666 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
704 2667 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
705 2668 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
706 2669 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
707 2670 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
708 2671 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
709 2672 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
710 2673 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
711 2674 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
712 2675 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
721 2684 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
722 2685 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
723 2686 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
724 2687 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
725 2688 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
726 2689 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
727 2690 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
728 2691 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
730 2693 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
731 2694 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
732 2695 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
733 2696 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
744 2707 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
745 2708 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
746 2709 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
747 2710 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
748 2711 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
749 2712 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
750 2713 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
751 2714 2.468915 AGAACCTAGTCTTACCCCTGC 58.531 52.381 0.00 0.00 0.00 4.85
752 2715 7.909485 TTATAAGAACCTAGTCTTACCCCTG 57.091 40.000 5.25 0.00 41.67 4.45
753 2716 7.733955 GGATTATAAGAACCTAGTCTTACCCCT 59.266 40.741 5.25 0.00 41.67 4.79
754 2717 7.038445 GGGATTATAAGAACCTAGTCTTACCCC 60.038 44.444 11.75 11.67 41.67 4.95
755 2718 7.733955 AGGGATTATAAGAACCTAGTCTTACCC 59.266 40.741 13.54 13.54 41.67 3.69
756 2719 8.724113 AGGGATTATAAGAACCTAGTCTTACC 57.276 38.462 5.25 3.23 41.67 2.85
757 2720 8.805175 GGAGGGATTATAAGAACCTAGTCTTAC 58.195 40.741 5.25 0.00 41.67 2.34
758 2721 7.954620 GGGAGGGATTATAAGAACCTAGTCTTA 59.045 40.741 5.54 5.54 42.73 2.10
759 2722 6.788456 GGGAGGGATTATAAGAACCTAGTCTT 59.212 42.308 5.62 1.65 40.89 3.01
760 2723 6.324544 GGGAGGGATTATAAGAACCTAGTCT 58.675 44.000 5.62 0.00 0.00 3.24
761 2724 5.484644 GGGGAGGGATTATAAGAACCTAGTC 59.515 48.000 5.62 2.40 0.00 2.59
762 2725 5.102346 TGGGGAGGGATTATAAGAACCTAGT 60.102 44.000 5.62 0.00 0.00 2.57
763 2726 5.412384 TGGGGAGGGATTATAAGAACCTAG 58.588 45.833 5.62 0.00 0.00 3.02
764 2727 5.138996 TCTGGGGAGGGATTATAAGAACCTA 59.861 44.000 5.62 0.00 0.00 3.08
765 2728 4.077387 TCTGGGGAGGGATTATAAGAACCT 60.077 45.833 5.38 5.38 0.00 3.50
766 2729 4.041815 GTCTGGGGAGGGATTATAAGAACC 59.958 50.000 0.00 0.00 0.00 3.62
767 2730 4.041815 GGTCTGGGGAGGGATTATAAGAAC 59.958 50.000 0.00 0.00 0.00 3.01
768 2731 4.240323 GGTCTGGGGAGGGATTATAAGAA 58.760 47.826 0.00 0.00 0.00 2.52
769 2732 3.441054 GGGTCTGGGGAGGGATTATAAGA 60.441 52.174 0.00 0.00 0.00 2.10
770 2733 2.913617 GGGTCTGGGGAGGGATTATAAG 59.086 54.545 0.00 0.00 0.00 1.73
771 2734 2.430287 GGGGTCTGGGGAGGGATTATAA 60.430 54.545 0.00 0.00 0.00 0.98
772 2735 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
773 2736 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
774 2737 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
775 2738 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
776 2739 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
777 2740 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
779 2742 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
780 2743 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
781 2744 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
782 2745 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
783 2746 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
784 2747 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
785 2748 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
793 2756 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
794 2757 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
795 2758 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
796 2759 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
797 2760 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
798 2761 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
799 2762 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
800 2763 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
801 2764 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
802 2765 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
803 2766 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
804 2767 2.409948 AACCCAGTGCATAGAAGCTC 57.590 50.000 0.00 0.00 34.99 4.09
805 2768 2.224867 ACAAACCCAGTGCATAGAAGCT 60.225 45.455 0.00 0.00 34.99 3.74
806 2769 2.162408 GACAAACCCAGTGCATAGAAGC 59.838 50.000 0.00 0.00 0.00 3.86
807 2770 2.749621 GGACAAACCCAGTGCATAGAAG 59.250 50.000 0.00 0.00 0.00 2.85
808 2771 2.375174 AGGACAAACCCAGTGCATAGAA 59.625 45.455 0.00 0.00 40.05 2.10
809 2772 1.985159 AGGACAAACCCAGTGCATAGA 59.015 47.619 0.00 0.00 40.05 1.98
810 2773 2.496899 AGGACAAACCCAGTGCATAG 57.503 50.000 0.00 0.00 40.05 2.23
811 2774 3.178046 TCTAGGACAAACCCAGTGCATA 58.822 45.455 0.00 0.00 40.05 3.14
812 2775 1.985159 TCTAGGACAAACCCAGTGCAT 59.015 47.619 0.00 0.00 40.05 3.96
813 2776 1.429930 TCTAGGACAAACCCAGTGCA 58.570 50.000 0.00 0.00 40.05 4.57
814 2777 2.789409 ATCTAGGACAAACCCAGTGC 57.211 50.000 0.00 0.00 40.05 4.40
815 2778 5.368989 GGATAATCTAGGACAAACCCAGTG 58.631 45.833 0.00 0.00 40.05 3.66
816 2779 4.412528 GGGATAATCTAGGACAAACCCAGT 59.587 45.833 0.00 0.00 40.05 4.00
817 2780 4.202472 GGGGATAATCTAGGACAAACCCAG 60.202 50.000 0.00 0.00 40.05 4.45
818 2781 3.720002 GGGGATAATCTAGGACAAACCCA 59.280 47.826 0.00 0.00 40.05 4.51
819 2782 3.981375 AGGGGATAATCTAGGACAAACCC 59.019 47.826 0.00 0.00 40.05 4.11
820 2783 5.648330 AAGGGGATAATCTAGGACAAACC 57.352 43.478 0.00 0.00 39.35 3.27
821 2784 9.642343 AAAATAAGGGGATAATCTAGGACAAAC 57.358 33.333 0.00 0.00 0.00 2.93
1403 3389 5.092554 TGGATTAGTCTTGCGGTCAATAA 57.907 39.130 0.00 0.00 0.00 1.40
1506 3498 6.130582 ATGATGCTTTCACTCGTGTCAACG 62.131 45.833 0.00 0.00 43.70 4.10
1507 3499 2.543848 TGATGCTTTCACTCGTGTCAAC 59.456 45.455 0.00 0.00 0.00 3.18
1508 3500 2.832563 TGATGCTTTCACTCGTGTCAA 58.167 42.857 0.00 0.00 0.00 3.18
1731 3723 1.269569 GCCGGCACAAGCTAAGTTTTT 60.270 47.619 24.80 0.00 41.70 1.94
1739 3731 2.670934 CAAGAGCCGGCACAAGCT 60.671 61.111 31.54 14.36 40.47 3.74
1933 3927 1.830477 GGGCCCTAATTTGTTGATGCA 59.170 47.619 17.04 0.00 0.00 3.96
1977 3971 6.398918 CAGTAGTTATGTACTCACCTGCTTT 58.601 40.000 0.00 0.00 38.33 3.51
2223 5134 3.573598 CACAGAGTGCAACAACAACAAA 58.426 40.909 0.00 0.00 41.43 2.83
2315 5301 5.220624 CGAGCACCAGTGTACTAGTAGTAAG 60.221 48.000 11.64 3.13 31.62 2.34
2332 5318 2.544267 GTGCCTATTCATAACGAGCACC 59.456 50.000 0.00 0.00 42.44 5.01
2393 5407 9.614792 AGTAGGTCAATTTTATAGTTGTGGATC 57.385 33.333 0.00 0.00 0.00 3.36
2394 5408 9.975218 AAGTAGGTCAATTTTATAGTTGTGGAT 57.025 29.630 0.00 0.00 0.00 3.41
2471 5485 5.277393 GGAGCTATTAAGAACTTTAAGGCGC 60.277 44.000 0.00 0.00 0.00 6.53
2491 5505 6.544564 AGAAGATAGTCTAGTAGTTGTGGAGC 59.455 42.308 0.00 0.00 0.00 4.70
2746 6057 4.163839 GTCCCTGTAGTCCAGTCTACTAGA 59.836 50.000 0.00 0.00 40.39 2.43
2748 6059 4.110072 AGTCCCTGTAGTCCAGTCTACTA 58.890 47.826 4.20 0.00 40.39 1.82
2757 6069 5.072872 TGAGTACCTATAGTCCCTGTAGTCC 59.927 48.000 13.79 3.24 33.11 3.85
2758 6070 6.185114 TGAGTACCTATAGTCCCTGTAGTC 57.815 45.833 11.25 11.25 34.14 2.59
2759 6071 6.587560 TTGAGTACCTATAGTCCCTGTAGT 57.412 41.667 0.00 0.00 30.58 2.73
2760 6072 9.584008 TTAATTGAGTACCTATAGTCCCTGTAG 57.416 37.037 0.00 0.00 30.58 2.74
2762 6074 8.871125 CATTAATTGAGTACCTATAGTCCCTGT 58.129 37.037 0.00 0.00 30.58 4.00
2763 6075 8.871125 ACATTAATTGAGTACCTATAGTCCCTG 58.129 37.037 0.00 0.00 30.58 4.45
2764 6076 8.871125 CACATTAATTGAGTACCTATAGTCCCT 58.129 37.037 0.00 0.00 30.58 4.20
2765 6077 8.648693 ACACATTAATTGAGTACCTATAGTCCC 58.351 37.037 0.00 0.00 30.58 4.46
2832 6189 1.229428 CTGCAGGTTCGCTTTTCTCA 58.771 50.000 5.57 0.00 0.00 3.27
3177 6534 7.166167 GGTACTCAGTTCCTATTTCTTCCAAA 58.834 38.462 0.00 0.00 0.00 3.28
3417 6779 6.511929 GCTCTTGTAAACTTCTCCACTCAAAC 60.512 42.308 0.00 0.00 0.00 2.93
3495 6857 5.699097 TTGAAAAGGTAACCAAGGAATCG 57.301 39.130 0.00 0.00 37.17 3.34
3609 6971 2.414481 GCAATCTATATCAGCGCACCTG 59.586 50.000 11.47 0.00 43.17 4.00
3810 7196 2.029623 TGTACTCGGAACCCAGATAGC 58.970 52.381 0.00 0.00 0.00 2.97
3824 7210 3.879295 CCAATCACCATCCATGTGTACTC 59.121 47.826 0.00 0.00 0.00 2.59
4043 7429 1.112113 TTCTATGCACGGAGGAGGAC 58.888 55.000 0.00 0.00 0.00 3.85
4148 7534 3.008375 AGCCAAGTCTTTCATCACTAGCA 59.992 43.478 0.00 0.00 0.00 3.49
4149 7535 3.604582 AGCCAAGTCTTTCATCACTAGC 58.395 45.455 0.00 0.00 0.00 3.42
4159 7545 1.136891 GGTGCAACAAGCCAAGTCTTT 59.863 47.619 0.00 0.00 44.83 2.52
4164 7550 3.536164 TGGGTGCAACAAGCCAAG 58.464 55.556 3.06 0.00 44.53 3.61
4211 7597 3.895232 TGACTTTCAGATACTCCAGCC 57.105 47.619 0.00 0.00 0.00 4.85
4218 7604 4.390297 GGAGCACAGTTGACTTTCAGATAC 59.610 45.833 0.00 0.00 0.00 2.24
4221 7607 2.170397 TGGAGCACAGTTGACTTTCAGA 59.830 45.455 0.00 0.00 0.00 3.27
4234 7620 0.671472 CACTTGATCGCTGGAGCACA 60.671 55.000 0.00 0.00 38.51 4.57
4275 7661 3.636231 CAACGGTGGCTCTGGGGA 61.636 66.667 0.00 0.00 0.00 4.81
4281 7667 0.750850 TAGGATAGCAACGGTGGCTC 59.249 55.000 14.49 0.24 42.62 4.70
4300 7686 1.315257 GCAGTCACCATGCGGGATTT 61.315 55.000 0.60 0.00 41.15 2.17
4301 7687 1.750399 GCAGTCACCATGCGGGATT 60.750 57.895 0.60 0.00 41.15 3.01
4307 7693 0.179156 CGGAAATGCAGTCACCATGC 60.179 55.000 10.12 0.00 44.11 4.06
4334 7720 9.305555 CCACCAATTCTAATAAATCCATCTCAT 57.694 33.333 0.00 0.00 0.00 2.90
4356 7742 1.452108 CCGCTCCTCCAATTCCACC 60.452 63.158 0.00 0.00 0.00 4.61
4372 7758 0.839946 ACTTCCTCATCCCATTCCCG 59.160 55.000 0.00 0.00 0.00 5.14
4377 7763 1.684248 GCTTGCACTTCCTCATCCCAT 60.684 52.381 0.00 0.00 0.00 4.00
4383 7769 3.011085 CACAGCTTGCACTTCCTCA 57.989 52.632 0.00 0.00 0.00 3.86
4510 7896 2.691011 AGTTCTCTAGCGAATGGAGACC 59.309 50.000 0.00 0.00 44.46 3.85
4650 8036 3.444703 AGTCTCCGTAATGCACTCATC 57.555 47.619 0.00 0.00 31.27 2.92
4660 8046 1.684450 TGTCAGCACAAGTCTCCGTAA 59.316 47.619 0.00 0.00 0.00 3.18
4707 8093 0.250234 CCATCTTGTTGGGCGAGAGA 59.750 55.000 0.00 0.00 40.71 3.10
4780 8166 5.338708 CCATGAAACCAAGTATCTCCAGACT 60.339 44.000 0.00 0.00 0.00 3.24
5007 8400 5.298276 ACGAAGTTAAGATGGAAACAGCAAA 59.702 36.000 0.00 0.00 46.91 3.68
5027 8420 2.258591 GGCTGCAGAGTCGACGAA 59.741 61.111 20.43 0.00 0.00 3.85
5063 8456 4.133078 CTCCTCCTCTAAATGGTCATTGC 58.867 47.826 0.00 0.00 0.00 3.56
5064 8457 4.133078 GCTCCTCCTCTAAATGGTCATTG 58.867 47.826 0.00 0.00 0.00 2.82
5065 8458 3.782523 TGCTCCTCCTCTAAATGGTCATT 59.217 43.478 0.00 0.00 0.00 2.57
5066 8459 3.387962 TGCTCCTCCTCTAAATGGTCAT 58.612 45.455 0.00 0.00 0.00 3.06
5067 8460 2.832838 TGCTCCTCCTCTAAATGGTCA 58.167 47.619 0.00 0.00 0.00 4.02
5068 8461 3.198853 AGTTGCTCCTCCTCTAAATGGTC 59.801 47.826 0.00 0.00 0.00 4.02
5069 8462 3.054802 CAGTTGCTCCTCCTCTAAATGGT 60.055 47.826 0.00 0.00 0.00 3.55
5070 8463 3.054802 ACAGTTGCTCCTCCTCTAAATGG 60.055 47.826 0.00 0.00 0.00 3.16
5071 8464 4.187694 GACAGTTGCTCCTCCTCTAAATG 58.812 47.826 0.00 0.00 0.00 2.32
5072 8465 3.198853 GGACAGTTGCTCCTCCTCTAAAT 59.801 47.826 0.00 0.00 0.00 1.40
5073 8466 2.567615 GGACAGTTGCTCCTCCTCTAAA 59.432 50.000 0.00 0.00 0.00 1.85
5074 8467 2.180276 GGACAGTTGCTCCTCCTCTAA 58.820 52.381 0.00 0.00 0.00 2.10
5083 8479 2.375766 CGTCTGCGGACAGTTGCTC 61.376 63.158 24.91 0.00 44.77 4.26
5097 8493 1.470051 GCTCTTCCTCTTCTCCGTCT 58.530 55.000 0.00 0.00 0.00 4.18
5243 8644 2.699768 CCCACGGATGCGTGCATTT 61.700 57.895 31.43 0.00 38.43 2.32
5244 8645 3.133464 CCCACGGATGCGTGCATT 61.133 61.111 31.43 0.00 38.43 3.56
5270 8671 1.072266 TTATGGAGCCCAACCACTGT 58.928 50.000 0.00 0.00 40.36 3.55
5308 8709 1.150536 TTCTCCCGGCAGCAAGTTT 59.849 52.632 0.00 0.00 0.00 2.66
5311 8712 1.172180 TTTGTTCTCCCGGCAGCAAG 61.172 55.000 0.00 0.00 0.00 4.01
5321 8722 0.878961 ACACGACGCCTTTGTTCTCC 60.879 55.000 0.00 0.00 0.00 3.71
5441 8842 0.178068 AACAGGTGACGAGTGCAGTT 59.822 50.000 0.00 0.00 0.00 3.16
5484 8885 6.015350 TCGTTACCAAATTGAAAGGCCAAATA 60.015 34.615 5.01 0.00 0.00 1.40
5559 8960 3.366577 GCTGTCATGCATGATGTGAACAA 60.367 43.478 30.89 3.65 39.30 2.83
5561 8962 2.162809 TGCTGTCATGCATGATGTGAAC 59.837 45.455 30.89 18.18 39.30 3.18
5613 9014 7.669722 ACAGCCATATTGTTTCCTTTTTCTCTA 59.330 33.333 0.00 0.00 0.00 2.43
5671 9072 6.348868 GCCTTGTTTTGTTGTTTTTGATGGAA 60.349 34.615 0.00 0.00 0.00 3.53
5680 9089 3.002102 CAGCAGCCTTGTTTTGTTGTTT 58.998 40.909 0.00 0.00 0.00 2.83
5701 9110 7.513968 CATGTTTCCTTCTAGCGATATAAAGC 58.486 38.462 0.00 0.00 0.00 3.51
5721 9130 4.248859 CAAGAGCAGTGTACTAGCATGTT 58.751 43.478 0.00 0.00 0.00 2.71
5722 9131 3.854666 CAAGAGCAGTGTACTAGCATGT 58.145 45.455 0.00 0.00 0.00 3.21
5723 9132 2.606725 GCAAGAGCAGTGTACTAGCATG 59.393 50.000 0.00 0.00 41.58 4.06
5724 9133 2.499289 AGCAAGAGCAGTGTACTAGCAT 59.501 45.455 0.00 0.00 45.49 3.79
5725 9134 1.895798 AGCAAGAGCAGTGTACTAGCA 59.104 47.619 0.00 0.00 45.49 3.49
5726 9135 2.266554 CAGCAAGAGCAGTGTACTAGC 58.733 52.381 0.00 0.00 45.49 3.42
5727 9136 3.584406 ACAGCAAGAGCAGTGTACTAG 57.416 47.619 0.00 0.00 45.49 2.57
5728 9137 5.661056 ATTACAGCAAGAGCAGTGTACTA 57.339 39.130 0.00 0.00 45.49 1.82
5729 9138 4.543590 ATTACAGCAAGAGCAGTGTACT 57.456 40.909 0.00 0.00 45.49 2.73
5730 9139 4.690748 TGAATTACAGCAAGAGCAGTGTAC 59.309 41.667 0.00 0.00 45.49 2.90
5731 9140 4.893608 TGAATTACAGCAAGAGCAGTGTA 58.106 39.130 0.00 0.00 45.49 2.90
5732 9141 3.743521 TGAATTACAGCAAGAGCAGTGT 58.256 40.909 0.00 0.00 45.49 3.55
5945 9354 7.807907 CCTATTTACTGCTTGGTTTTACAACAG 59.192 37.037 0.00 0.00 36.48 3.16
5985 9394 6.127730 ACCCAGGAATAAATTAACGCAGAAAG 60.128 38.462 0.00 0.00 0.00 2.62
5986 9395 5.712917 ACCCAGGAATAAATTAACGCAGAAA 59.287 36.000 0.00 0.00 0.00 2.52
5989 9398 5.449999 GGAACCCAGGAATAAATTAACGCAG 60.450 44.000 0.00 0.00 0.00 5.18
6023 9432 8.103305 AGGAATAGTCTATTTGCTGTCAGAAAA 58.897 33.333 8.50 8.50 0.00 2.29
6024 9433 7.624549 AGGAATAGTCTATTTGCTGTCAGAAA 58.375 34.615 3.32 0.00 0.00 2.52
6025 9434 7.093333 TGAGGAATAGTCTATTTGCTGTCAGAA 60.093 37.037 3.32 0.00 0.00 3.02
6026 9435 6.381133 TGAGGAATAGTCTATTTGCTGTCAGA 59.619 38.462 3.32 0.00 0.00 3.27
6027 9436 6.577103 TGAGGAATAGTCTATTTGCTGTCAG 58.423 40.000 6.56 0.00 0.00 3.51
6028 9437 6.544928 TGAGGAATAGTCTATTTGCTGTCA 57.455 37.500 6.56 3.74 0.00 3.58
6029 9438 7.849804 TTTGAGGAATAGTCTATTTGCTGTC 57.150 36.000 6.56 1.56 0.00 3.51
6030 9439 9.905713 TTATTTGAGGAATAGTCTATTTGCTGT 57.094 29.630 6.56 0.00 32.06 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.