Multiple sequence alignment - TraesCS2D01G495800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G495800 chr2D 100.000 3602 0 0 1 3602 592614514 592618115 0.000000e+00 6652.0
1 TraesCS2D01G495800 chr2D 85.141 249 27 4 1614 1853 440324769 440325016 2.780000e-61 246.0
2 TraesCS2D01G495800 chr2D 89.744 156 12 3 1698 1851 56434511 56434664 2.840000e-46 196.0
3 TraesCS2D01G495800 chr2D 89.437 142 15 0 1704 1845 537931784 537931643 2.860000e-41 180.0
4 TraesCS2D01G495800 chr2D 92.742 124 6 2 3209 3330 2767158 2767036 3.700000e-40 176.0
5 TraesCS2D01G495800 chr2D 93.333 90 4 2 3062 3150 2767232 2767144 8.110000e-27 132.0
6 TraesCS2D01G495800 chr2D 100.000 28 0 0 3181 3208 471015817 471015790 6.000000e-03 52.8
7 TraesCS2D01G495800 chr2B 93.187 1864 83 19 1215 3067 718583635 718585465 0.000000e+00 2699.0
8 TraesCS2D01G495800 chr2B 96.014 276 9 2 3328 3602 718585456 718585730 7.090000e-122 448.0
9 TraesCS2D01G495800 chr2B 89.474 228 14 7 497 719 718582782 718583004 2.740000e-71 279.0
10 TraesCS2D01G495800 chr2B 88.742 151 16 1 1704 1854 640609390 640609241 2.210000e-42 183.0
11 TraesCS2D01G495800 chr2B 93.548 124 5 2 3209 3330 9109338 9109216 7.940000e-42 182.0
12 TraesCS2D01G495800 chr2B 88.079 151 18 0 1701 1851 89330929 89331079 2.860000e-41 180.0
13 TraesCS2D01G495800 chr2B 92.222 90 6 1 3062 3150 9109413 9109324 3.780000e-25 126.0
14 TraesCS2D01G495800 chr2B 100.000 29 0 0 3180 3208 474398026 474397998 2.000000e-03 54.7
15 TraesCS2D01G495800 chr2A 90.948 1182 57 14 827 1973 727164684 727165850 0.000000e+00 1544.0
16 TraesCS2D01G495800 chr2A 94.416 770 34 5 2303 3067 727171417 727172182 0.000000e+00 1175.0
17 TraesCS2D01G495800 chr2A 91.837 686 42 7 32 707 727163854 727164535 0.000000e+00 944.0
18 TraesCS2D01G495800 chr2A 93.529 340 20 2 1964 2303 727165891 727166228 4.150000e-139 505.0
19 TraesCS2D01G495800 chr2A 96.014 276 8 3 3328 3602 727172173 727172446 2.550000e-121 446.0
20 TraesCS2D01G495800 chr2A 88.980 245 20 2 1614 1853 583841102 583841344 2.720000e-76 296.0
21 TraesCS2D01G495800 chr2A 95.238 126 3 2 3209 3332 139979888 139980012 2.840000e-46 196.0
22 TraesCS2D01G495800 chr2A 92.800 125 6 2 3209 3331 1502636 1502759 1.030000e-40 178.0
23 TraesCS2D01G495800 chr2A 91.667 120 6 2 674 789 727164559 727164678 2.880000e-36 163.0
24 TraesCS2D01G495800 chr2A 95.238 84 4 0 3065 3148 1502565 1502648 2.260000e-27 134.0
25 TraesCS2D01G495800 chr2A 93.023 86 6 0 3065 3150 139979817 139979902 3.780000e-25 126.0
26 TraesCS2D01G495800 chr2A 97.059 34 0 1 3180 3212 19068472 19068439 5.020000e-04 56.5
27 TraesCS2D01G495800 chr2A 94.595 37 1 1 3182 3217 651811223 651811259 5.020000e-04 56.5
28 TraesCS2D01G495800 chr4D 83.673 245 17 8 1628 1850 509278002 509277759 3.640000e-50 209.0
29 TraesCS2D01G495800 chr7A 90.066 151 15 0 1281 1431 179896010 179895860 2.840000e-46 196.0
30 TraesCS2D01G495800 chr7A 92.969 128 7 1 3209 3334 225615126 225615253 6.140000e-43 185.0
31 TraesCS2D01G495800 chr7A 84.118 170 27 0 1686 1855 122200036 122200205 8.000000e-37 165.0
32 TraesCS2D01G495800 chr7A 94.048 84 5 0 3065 3148 41784214 41784131 1.050000e-25 128.0
33 TraesCS2D01G495800 chr1A 94.444 126 4 2 3209 3332 532241736 532241860 1.320000e-44 191.0
34 TraesCS2D01G495800 chr1A 93.548 124 5 2 3209 3330 464114344 464114466 7.940000e-42 182.0
35 TraesCS2D01G495800 chr1A 94.253 87 3 2 1629 1714 9089190 9089275 8.110000e-27 132.0
36 TraesCS2D01G495800 chr1A 94.048 84 5 0 3065 3148 464114273 464114356 1.050000e-25 128.0
37 TraesCS2D01G495800 chr1A 97.143 35 0 1 3175 3209 20907655 20907622 1.400000e-04 58.4
38 TraesCS2D01G495800 chr1A 97.059 34 0 1 3175 3208 531688563 531688531 5.020000e-04 56.5
39 TraesCS2D01G495800 chr7D 92.742 124 5 3 3209 3330 587414068 587413947 3.700000e-40 176.0
40 TraesCS2D01G495800 chr7D 93.023 86 6 0 3065 3150 587414139 587414054 3.780000e-25 126.0
41 TraesCS2D01G495800 chr7D 95.000 40 2 0 173 212 413994194 413994155 3.000000e-06 63.9
42 TraesCS2D01G495800 chr3D 91.339 127 7 3 3209 3332 163878056 163877931 1.720000e-38 171.0
43 TraesCS2D01G495800 chr3D 94.186 86 5 0 3065 3150 163878127 163878042 8.110000e-27 132.0
44 TraesCS2D01G495800 chr5D 94.186 86 5 0 3065 3150 17235811 17235896 8.110000e-27 132.0
45 TraesCS2D01G495800 chr5D 83.607 122 18 2 1724 1844 37896709 37896829 2.940000e-21 113.0
46 TraesCS2D01G495800 chr5D 97.500 40 1 0 173 212 80539185 80539224 6.450000e-08 69.4
47 TraesCS2D01G495800 chr3A 77.220 259 33 10 1623 1858 620990128 620989873 1.050000e-25 128.0
48 TraesCS2D01G495800 chr1B 78.448 232 25 10 1640 1847 464138005 464137775 1.050000e-25 128.0
49 TraesCS2D01G495800 chr1B 100.000 30 0 0 3180 3209 504521393 504521364 5.020000e-04 56.5
50 TraesCS2D01G495800 chr6D 85.417 96 14 0 1619 1714 470299144 470299239 2.290000e-17 100.0
51 TraesCS2D01G495800 chr6D 96.970 33 0 1 3175 3207 467835184 467835153 2.000000e-03 54.7
52 TraesCS2D01G495800 chr3B 88.158 76 8 1 1642 1717 223082356 223082282 4.950000e-14 89.8
53 TraesCS2D01G495800 chr5B 95.238 42 2 0 1506 1547 338952883 338952842 2.320000e-07 67.6
54 TraesCS2D01G495800 chr5B 100.000 29 0 0 3180 3208 585262795 585262823 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G495800 chr2D 592614514 592618115 3601 False 6652.0 6652 100.000000 1 3602 1 chr2D.!!$F3 3601
1 TraesCS2D01G495800 chr2B 718582782 718585730 2948 False 1142.0 2699 92.891667 497 3602 3 chr2B.!!$F2 3105
2 TraesCS2D01G495800 chr2A 727171417 727172446 1029 False 810.5 1175 95.215000 2303 3602 2 chr2A.!!$F6 1299
3 TraesCS2D01G495800 chr2A 727163854 727166228 2374 False 789.0 1544 91.995250 32 2303 4 chr2A.!!$F5 2271

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 881 0.179062 ATGCCGCAACCTCTGAGATC 60.179 55.0 6.17 0.00 0.00 2.75 F
1220 1362 0.034059 CTATCTCGCGGCTGGGATTT 59.966 55.0 13.33 6.24 36.36 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1626 1773 1.068333 TGACGTTCGGTACTTACCAGC 60.068 52.381 6.25 0.0 46.8 4.85 R
3086 3322 0.040514 CTCCGCGAAAACAATGCACA 60.041 50.000 8.23 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.423154 CGAGGACGCTGGCCAAAC 61.423 66.667 7.01 0.04 0.00 2.93
18 19 2.281484 GAGGACGCTGGCCAAACA 60.281 61.111 7.01 0.00 0.00 2.83
19 20 1.896660 GAGGACGCTGGCCAAACAA 60.897 57.895 7.01 0.00 0.00 2.83
20 21 1.856265 GAGGACGCTGGCCAAACAAG 61.856 60.000 7.01 0.00 0.00 3.16
21 22 2.644992 GACGCTGGCCAAACAAGG 59.355 61.111 7.01 0.00 0.00 3.61
22 23 1.896660 GACGCTGGCCAAACAAGGA 60.897 57.895 7.01 0.00 0.00 3.36
23 24 2.130073 GACGCTGGCCAAACAAGGAC 62.130 60.000 7.01 0.00 37.13 3.85
24 25 1.898574 CGCTGGCCAAACAAGGACT 60.899 57.895 7.01 0.00 37.66 3.85
25 26 1.662044 GCTGGCCAAACAAGGACTG 59.338 57.895 7.01 0.00 37.66 3.51
26 27 0.823356 GCTGGCCAAACAAGGACTGA 60.823 55.000 7.01 0.00 37.82 3.41
27 28 1.915141 CTGGCCAAACAAGGACTGAT 58.085 50.000 7.01 0.00 37.82 2.90
28 29 1.542915 CTGGCCAAACAAGGACTGATG 59.457 52.381 7.01 0.00 37.82 3.07
29 30 1.144708 TGGCCAAACAAGGACTGATGA 59.855 47.619 0.61 0.00 37.66 2.92
30 31 1.815003 GGCCAAACAAGGACTGATGAG 59.185 52.381 0.00 0.00 32.29 2.90
31 32 1.200948 GCCAAACAAGGACTGATGAGC 59.799 52.381 0.00 0.00 0.00 4.26
32 33 2.507484 CCAAACAAGGACTGATGAGCA 58.493 47.619 0.00 0.00 0.00 4.26
64 65 2.346803 AGCACAACTCGAAATATGCGT 58.653 42.857 5.93 0.00 38.12 5.24
72 73 4.000988 ACTCGAAATATGCGTCTTGGTTT 58.999 39.130 0.00 0.00 0.00 3.27
135 136 6.143438 ACAATATAAAAACGATCCTCTACGCG 59.857 38.462 3.53 3.53 0.00 6.01
139 140 0.179145 AACGATCCTCTACGCGTTGG 60.179 55.000 20.78 17.85 44.19 3.77
156 157 0.822944 TGGTGCATGGCCCAATATCG 60.823 55.000 0.00 0.00 0.00 2.92
181 182 5.755375 ACGTCAAGACTTATGAAGCATATGG 59.245 40.000 4.56 0.00 30.69 2.74
210 211 5.977489 TGGATACACATTCTATACCGAGG 57.023 43.478 0.00 0.00 46.17 4.63
246 247 8.031277 ACAAAGATACTAATTACCGAAACTCGT 58.969 33.333 0.00 0.00 38.40 4.18
253 254 0.314935 TACCGAAACTCGTGGGTGAC 59.685 55.000 0.00 0.00 38.40 3.67
269 270 1.078848 GACGATGCAGGCCTTCACT 60.079 57.895 7.43 0.00 0.00 3.41
281 282 2.162408 GGCCTTCACTGCTGATACAAAC 59.838 50.000 0.00 0.00 0.00 2.93
302 303 1.499870 AGGAGATACTACGGGAGGCTT 59.500 52.381 0.00 0.00 0.00 4.35
313 314 2.012673 CGGGAGGCTTGAAGAAATCTG 58.987 52.381 0.00 0.00 0.00 2.90
328 329 6.043854 AGAAATCTGGGAACTTGACTACTC 57.956 41.667 0.00 0.00 0.00 2.59
329 330 5.544176 AGAAATCTGGGAACTTGACTACTCA 59.456 40.000 0.00 0.00 0.00 3.41
357 363 2.687935 ACCAAGAAGCAATGTTTCGTGT 59.312 40.909 19.70 9.52 33.87 4.49
359 365 2.949714 AGAAGCAATGTTTCGTGTCG 57.050 45.000 4.25 0.00 0.00 4.35
360 366 1.531149 AGAAGCAATGTTTCGTGTCGG 59.469 47.619 4.25 0.00 0.00 4.79
380 386 1.684983 GATGGGCAAGGAATGTCATGG 59.315 52.381 0.00 0.00 34.42 3.66
432 438 5.897377 ATACCCACAAAGACTAACAATGC 57.103 39.130 0.00 0.00 0.00 3.56
454 460 0.251121 TGAAAAGGAATCAGCGCCCA 60.251 50.000 2.29 0.00 0.00 5.36
463 469 0.607489 ATCAGCGCCCAATATGAGCC 60.607 55.000 2.29 0.00 0.00 4.70
464 470 1.526686 CAGCGCCCAATATGAGCCA 60.527 57.895 2.29 0.00 0.00 4.75
483 489 3.439129 GCCATGGGTATTAGCCGATAAAC 59.561 47.826 15.13 0.00 38.98 2.01
499 505 4.566987 GATAAACTGTCCCAAACTCGACT 58.433 43.478 0.00 0.00 0.00 4.18
537 543 3.127030 GGAGGAGCAAAACCTTAATCACG 59.873 47.826 0.00 0.00 37.93 4.35
608 614 3.054948 TCACCCGACCGGAGATTTTTAAT 60.055 43.478 9.46 0.00 37.50 1.40
654 665 4.260170 GAGAGAAAATCTGGAGTGCACAT 58.740 43.478 21.04 3.82 38.84 3.21
697 762 1.277557 AGAGAAGAGTGCACACCATCC 59.722 52.381 21.04 8.40 0.00 3.51
698 763 1.277557 GAGAAGAGTGCACACCATCCT 59.722 52.381 21.04 7.86 0.00 3.24
701 766 3.327757 AGAAGAGTGCACACCATCCTTTA 59.672 43.478 21.04 0.00 0.00 1.85
789 858 2.223829 CGATACCTACAAGCCCACTCAG 60.224 54.545 0.00 0.00 0.00 3.35
790 859 0.902531 TACCTACAAGCCCACTCAGC 59.097 55.000 0.00 0.00 0.00 4.26
791 860 1.078143 CCTACAAGCCCACTCAGCC 60.078 63.158 0.00 0.00 0.00 4.85
793 862 1.841302 CTACAAGCCCACTCAGCCCA 61.841 60.000 0.00 0.00 0.00 5.36
794 863 1.207488 TACAAGCCCACTCAGCCCAT 61.207 55.000 0.00 0.00 0.00 4.00
795 864 2.050350 CAAGCCCACTCAGCCCATG 61.050 63.158 0.00 0.00 0.00 3.66
796 865 3.951769 AAGCCCACTCAGCCCATGC 62.952 63.158 0.00 0.00 37.95 4.06
801 870 4.349503 ACTCAGCCCATGCCGCAA 62.350 61.111 0.00 0.00 38.69 4.85
802 871 3.818787 CTCAGCCCATGCCGCAAC 61.819 66.667 0.00 0.00 38.69 4.17
807 876 3.136123 CCCATGCCGCAACCTCTG 61.136 66.667 0.00 0.00 0.00 3.35
808 877 2.046023 CCATGCCGCAACCTCTGA 60.046 61.111 0.00 0.00 0.00 3.27
809 878 2.110967 CCATGCCGCAACCTCTGAG 61.111 63.158 0.00 0.00 0.00 3.35
810 879 1.078918 CATGCCGCAACCTCTGAGA 60.079 57.895 6.17 0.00 0.00 3.27
811 880 0.463295 CATGCCGCAACCTCTGAGAT 60.463 55.000 6.17 0.00 0.00 2.75
812 881 0.179062 ATGCCGCAACCTCTGAGATC 60.179 55.000 6.17 0.00 0.00 2.75
813 882 1.219124 GCCGCAACCTCTGAGATCA 59.781 57.895 6.17 0.00 0.00 2.92
814 883 0.391661 GCCGCAACCTCTGAGATCAA 60.392 55.000 6.17 0.00 0.00 2.57
815 884 1.649664 CCGCAACCTCTGAGATCAAG 58.350 55.000 6.17 0.00 0.00 3.02
816 885 1.005340 CGCAACCTCTGAGATCAAGC 58.995 55.000 6.17 2.29 0.00 4.01
817 886 1.377536 GCAACCTCTGAGATCAAGCC 58.622 55.000 6.17 0.00 0.00 4.35
818 887 2.016096 GCAACCTCTGAGATCAAGCCC 61.016 57.143 6.17 0.00 0.00 5.19
819 888 0.915364 AACCTCTGAGATCAAGCCCC 59.085 55.000 6.17 0.00 0.00 5.80
820 889 0.985490 ACCTCTGAGATCAAGCCCCC 60.985 60.000 6.17 0.00 0.00 5.40
870 939 0.618680 CCACCTCCACTCATCTCCCA 60.619 60.000 0.00 0.00 0.00 4.37
872 941 0.980231 ACCTCCACTCATCTCCCAGC 60.980 60.000 0.00 0.00 0.00 4.85
873 942 1.694133 CCTCCACTCATCTCCCAGCC 61.694 65.000 0.00 0.00 0.00 4.85
1042 1111 3.663025 GAGAAGAAGCTGCTGAAGAAGT 58.337 45.455 1.35 0.00 0.00 3.01
1047 1116 1.889545 AGCTGCTGAAGAAGTCCAAC 58.110 50.000 0.00 0.00 0.00 3.77
1154 1223 1.474879 GTACACTCTCTCTCACCCAGC 59.525 57.143 0.00 0.00 0.00 4.85
1167 1236 2.697644 CCAGCCAATCCCCTCCCT 60.698 66.667 0.00 0.00 0.00 4.20
1195 1307 2.997315 CCTCCTGCCCGTCAGACA 60.997 66.667 0.41 0.00 45.72 3.41
1202 1314 1.367840 GCCCGTCAGACACAGTTCT 59.632 57.895 0.41 0.00 0.00 3.01
1220 1362 0.034059 CTATCTCGCGGCTGGGATTT 59.966 55.000 13.33 6.24 36.36 2.17
1245 1387 5.437289 TGAGCGTGTTGATTCAAGAAATT 57.563 34.783 0.00 0.00 0.00 1.82
1293 1438 4.553547 GCAACTAATCGATCCTGTGATTGC 60.554 45.833 0.00 5.19 36.32 3.56
1294 1439 4.679373 ACTAATCGATCCTGTGATTGCT 57.321 40.909 0.00 0.00 36.32 3.91
1302 1447 1.499056 CTGTGATTGCTGTGTCGCC 59.501 57.895 0.00 0.00 0.00 5.54
1323 1468 0.808755 CAGGTACAACGGGATTTGCC 59.191 55.000 0.00 0.00 0.00 4.52
1403 1548 0.817654 TCGAGATGACGGACATGCTT 59.182 50.000 0.00 0.00 39.56 3.91
1626 1773 7.491372 TGTGCTCTTGTCTATAAATTAAGGACG 59.509 37.037 0.00 0.00 0.00 4.79
1696 1843 2.736144 TCGACGGCAAGTTTAGTGAT 57.264 45.000 0.00 0.00 0.00 3.06
1721 1890 1.810151 GGATGGCAACTTTCGTGCTTA 59.190 47.619 0.00 0.00 37.61 3.09
1748 1917 2.202295 TTTTGACAGAAACTTGCCGC 57.798 45.000 0.00 0.00 0.00 6.53
1749 1918 1.098869 TTTGACAGAAACTTGCCGCA 58.901 45.000 0.00 0.00 0.00 5.69
1934 2111 7.365497 TGCATAAACCTCTCTGAGATTATCA 57.635 36.000 8.00 7.40 36.21 2.15
1935 2112 7.212976 TGCATAAACCTCTCTGAGATTATCAC 58.787 38.462 8.00 5.34 33.22 3.06
2108 2334 5.819901 GCCTGCTCATTTGTCTAGTCTAAAT 59.180 40.000 0.00 0.00 0.00 1.40
2197 2423 1.680338 AACTTTCAGTGAGCGCCTTT 58.320 45.000 2.29 0.00 0.00 3.11
2222 2450 1.700739 GGTCTCTATCTCTCTCCCGGA 59.299 57.143 0.73 0.00 0.00 5.14
2244 2472 7.382218 CCGGATTATAACAATGATTTCCTTTGC 59.618 37.037 0.00 0.00 34.36 3.68
2246 2474 9.822185 GGATTATAACAATGATTTCCTTTGCTT 57.178 29.630 0.00 0.00 34.36 3.91
2268 2498 7.603404 TGCTTGCTGAATAGTGCATTTTATTTT 59.397 29.630 0.00 0.00 39.07 1.82
2307 2537 9.900710 TTAAAGAAAGCGTTTATTGCTATGAAA 57.099 25.926 0.00 0.00 43.14 2.69
2321 2551 6.048732 TGCTATGAAACACTCAATGACCTA 57.951 37.500 0.00 0.00 37.67 3.08
2490 2720 1.299976 GGTCACCGATCCAGCCTTT 59.700 57.895 0.00 0.00 0.00 3.11
2538 2768 1.221840 CACCTGGGTGGATTCCTCG 59.778 63.158 11.62 0.00 42.00 4.63
2632 2862 6.592607 TGTCGTGATAGTAGAAATTTTGGGAC 59.407 38.462 0.00 0.00 0.00 4.46
2700 2930 6.261603 CCTGAATCTGCAGCTAAAATATGTCA 59.738 38.462 9.47 0.00 34.56 3.58
2717 2947 8.506168 AATATGTCAAGGTAGTTATGTGTTGG 57.494 34.615 0.00 0.00 0.00 3.77
2718 2948 4.647611 TGTCAAGGTAGTTATGTGTTGGG 58.352 43.478 0.00 0.00 0.00 4.12
2738 2968 3.686726 GGGAAGCTACTTGTGTGATGAAG 59.313 47.826 0.00 0.00 0.00 3.02
2739 2969 3.126000 GGAAGCTACTTGTGTGATGAAGC 59.874 47.826 0.00 0.00 0.00 3.86
2740 2970 3.692257 AGCTACTTGTGTGATGAAGCT 57.308 42.857 0.00 0.00 34.15 3.74
2741 2971 4.808414 AGCTACTTGTGTGATGAAGCTA 57.192 40.909 0.00 0.00 37.08 3.32
2744 2974 5.409826 AGCTACTTGTGTGATGAAGCTAAAC 59.590 40.000 0.00 0.00 37.08 2.01
2745 2975 4.732285 ACTTGTGTGATGAAGCTAAACG 57.268 40.909 0.00 0.00 0.00 3.60
2747 2977 4.211374 ACTTGTGTGATGAAGCTAAACGTC 59.789 41.667 0.00 0.00 0.00 4.34
2749 2979 3.064207 GTGTGATGAAGCTAAACGTCCA 58.936 45.455 0.00 0.00 0.00 4.02
2750 2980 3.684788 GTGTGATGAAGCTAAACGTCCAT 59.315 43.478 0.00 0.00 0.00 3.41
2751 2981 4.868171 GTGTGATGAAGCTAAACGTCCATA 59.132 41.667 0.00 0.00 0.00 2.74
2753 2983 5.350365 TGTGATGAAGCTAAACGTCCATAAC 59.650 40.000 0.00 0.00 0.00 1.89
2759 2990 3.623060 AGCTAAACGTCCATAACATGCAG 59.377 43.478 0.00 0.00 0.00 4.41
2765 2996 1.265095 GTCCATAACATGCAGATGCCG 59.735 52.381 1.72 0.00 41.18 5.69
2792 3024 3.264450 CAGTTCATACTTGTCCCCTTCCT 59.736 47.826 0.00 0.00 30.26 3.36
2897 3129 5.234757 GCAAGTTGATTGAATTGCTTGTTGA 59.765 36.000 7.16 0.00 43.59 3.18
2900 3132 8.430063 CAAGTTGATTGAATTGCTTGTTGATAC 58.570 33.333 0.00 0.00 41.83 2.24
2913 3147 5.105997 GCTTGTTGATACCAAATTGAGCTCT 60.106 40.000 16.19 0.00 33.49 4.09
2914 3148 5.885230 TGTTGATACCAAATTGAGCTCTG 57.115 39.130 16.19 4.39 33.49 3.35
2926 3160 3.207265 TGAGCTCTGTGGTAAAAGCAA 57.793 42.857 16.19 0.00 37.22 3.91
3064 3300 7.725251 TGAAGAAGCAAATTTGGACAATAAGT 58.275 30.769 19.47 0.00 0.00 2.24
3065 3301 7.652909 TGAAGAAGCAAATTTGGACAATAAGTG 59.347 33.333 19.47 0.00 0.00 3.16
3066 3302 6.458210 AGAAGCAAATTTGGACAATAAGTGG 58.542 36.000 19.47 0.00 0.00 4.00
3067 3303 6.267471 AGAAGCAAATTTGGACAATAAGTGGA 59.733 34.615 19.47 0.00 0.00 4.02
3068 3304 6.418057 AGCAAATTTGGACAATAAGTGGAA 57.582 33.333 19.47 0.00 0.00 3.53
3069 3305 7.008021 AGCAAATTTGGACAATAAGTGGAAT 57.992 32.000 19.47 0.00 0.00 3.01
3070 3306 7.452562 AGCAAATTTGGACAATAAGTGGAATT 58.547 30.769 19.47 0.00 0.00 2.17
3071 3307 7.938490 AGCAAATTTGGACAATAAGTGGAATTT 59.062 29.630 19.47 0.00 0.00 1.82
3072 3308 8.016801 GCAAATTTGGACAATAAGTGGAATTTG 58.983 33.333 19.47 11.68 0.00 2.32
3073 3309 7.671495 AATTTGGACAATAAGTGGAATTTGC 57.329 32.000 0.00 0.00 0.00 3.68
3074 3310 5.798125 TTGGACAATAAGTGGAATTTGCA 57.202 34.783 0.00 0.00 0.00 4.08
3075 3311 5.389859 TGGACAATAAGTGGAATTTGCAG 57.610 39.130 0.00 0.00 0.00 4.41
3076 3312 5.076182 TGGACAATAAGTGGAATTTGCAGA 58.924 37.500 0.00 0.00 0.00 4.26
3077 3313 5.183713 TGGACAATAAGTGGAATTTGCAGAG 59.816 40.000 0.00 0.00 0.00 3.35
3078 3314 5.415701 GGACAATAAGTGGAATTTGCAGAGA 59.584 40.000 0.00 0.00 0.00 3.10
3079 3315 6.259550 ACAATAAGTGGAATTTGCAGAGAC 57.740 37.500 0.00 0.00 0.00 3.36
3080 3316 6.006449 ACAATAAGTGGAATTTGCAGAGACT 58.994 36.000 0.00 0.00 0.00 3.24
3081 3317 6.491403 ACAATAAGTGGAATTTGCAGAGACTT 59.509 34.615 0.00 0.00 0.00 3.01
3082 3318 7.665559 ACAATAAGTGGAATTTGCAGAGACTTA 59.334 33.333 0.00 0.00 0.00 2.24
3083 3319 5.948992 AAGTGGAATTTGCAGAGACTTAC 57.051 39.130 0.00 0.00 0.00 2.34
3084 3320 5.234466 AGTGGAATTTGCAGAGACTTACT 57.766 39.130 0.00 0.00 0.00 2.24
3085 3321 5.625150 AGTGGAATTTGCAGAGACTTACTT 58.375 37.500 0.00 0.00 0.00 2.24
3086 3322 6.064717 AGTGGAATTTGCAGAGACTTACTTT 58.935 36.000 0.00 0.00 0.00 2.66
3087 3323 6.016777 AGTGGAATTTGCAGAGACTTACTTTG 60.017 38.462 0.00 0.00 34.39 2.77
3088 3324 5.827797 TGGAATTTGCAGAGACTTACTTTGT 59.172 36.000 0.00 0.00 33.89 2.83
3089 3325 6.145535 GGAATTTGCAGAGACTTACTTTGTG 58.854 40.000 0.00 0.00 33.89 3.33
3090 3326 4.552166 TTTGCAGAGACTTACTTTGTGC 57.448 40.909 0.00 0.00 33.89 4.57
3091 3327 3.192541 TGCAGAGACTTACTTTGTGCA 57.807 42.857 0.00 0.00 37.59 4.57
3092 3328 3.743521 TGCAGAGACTTACTTTGTGCAT 58.256 40.909 0.00 0.00 36.17 3.96
3093 3329 4.136796 TGCAGAGACTTACTTTGTGCATT 58.863 39.130 0.00 0.00 36.17 3.56
3094 3330 4.023792 TGCAGAGACTTACTTTGTGCATTG 60.024 41.667 0.00 0.00 36.17 2.82
3095 3331 4.023707 GCAGAGACTTACTTTGTGCATTGT 60.024 41.667 0.00 0.00 33.89 2.71
3096 3332 5.506317 GCAGAGACTTACTTTGTGCATTGTT 60.506 40.000 0.00 0.00 33.89 2.83
3097 3333 6.498304 CAGAGACTTACTTTGTGCATTGTTT 58.502 36.000 0.00 0.00 0.00 2.83
3098 3334 6.974622 CAGAGACTTACTTTGTGCATTGTTTT 59.025 34.615 0.00 0.00 0.00 2.43
3099 3335 7.166473 CAGAGACTTACTTTGTGCATTGTTTTC 59.834 37.037 0.00 0.00 0.00 2.29
3100 3336 5.971202 AGACTTACTTTGTGCATTGTTTTCG 59.029 36.000 0.00 0.00 0.00 3.46
3101 3337 4.502645 ACTTACTTTGTGCATTGTTTTCGC 59.497 37.500 0.00 0.00 0.00 4.70
3102 3338 1.851666 ACTTTGTGCATTGTTTTCGCG 59.148 42.857 0.00 0.00 0.00 5.87
3103 3339 1.189884 CTTTGTGCATTGTTTTCGCGG 59.810 47.619 6.13 0.00 0.00 6.46
3104 3340 0.382158 TTGTGCATTGTTTTCGCGGA 59.618 45.000 6.13 0.00 0.00 5.54
3105 3341 0.040514 TGTGCATTGTTTTCGCGGAG 60.041 50.000 6.13 0.00 0.00 4.63
3118 3354 4.327885 CGGAGCGAATGAGGTAGC 57.672 61.111 0.00 0.00 0.00 3.58
3119 3355 1.437573 CGGAGCGAATGAGGTAGCA 59.562 57.895 0.00 0.00 0.00 3.49
3120 3356 0.596083 CGGAGCGAATGAGGTAGCAG 60.596 60.000 0.00 0.00 0.00 4.24
3121 3357 0.747255 GGAGCGAATGAGGTAGCAGA 59.253 55.000 0.00 0.00 0.00 4.26
3122 3358 1.342819 GGAGCGAATGAGGTAGCAGAT 59.657 52.381 0.00 0.00 0.00 2.90
3123 3359 2.558795 GGAGCGAATGAGGTAGCAGATA 59.441 50.000 0.00 0.00 0.00 1.98
3124 3360 3.366883 GGAGCGAATGAGGTAGCAGATAG 60.367 52.174 0.00 0.00 0.00 2.08
3125 3361 2.029470 AGCGAATGAGGTAGCAGATAGC 60.029 50.000 0.00 0.00 46.19 2.97
3133 3369 3.945285 GAGGTAGCAGATAGCCTAGCTAG 59.055 52.174 14.20 14.20 44.66 3.42
3134 3370 3.589735 AGGTAGCAGATAGCCTAGCTAGA 59.410 47.826 22.70 2.39 44.66 2.43
3135 3371 4.043561 AGGTAGCAGATAGCCTAGCTAGAA 59.956 45.833 22.70 7.55 44.66 2.10
3136 3372 4.767928 GGTAGCAGATAGCCTAGCTAGAAA 59.232 45.833 22.70 7.18 44.66 2.52
3137 3373 5.420739 GGTAGCAGATAGCCTAGCTAGAAAT 59.579 44.000 22.70 11.63 44.66 2.17
3138 3374 6.071051 GGTAGCAGATAGCCTAGCTAGAAATT 60.071 42.308 22.70 6.88 44.66 1.82
3139 3375 6.036577 AGCAGATAGCCTAGCTAGAAATTC 57.963 41.667 22.70 12.74 44.66 2.17
3140 3376 5.779771 AGCAGATAGCCTAGCTAGAAATTCT 59.220 40.000 22.70 14.61 44.66 2.40
3141 3377 6.071391 AGCAGATAGCCTAGCTAGAAATTCTC 60.071 42.308 22.70 10.33 44.66 2.87
3142 3378 6.071391 GCAGATAGCCTAGCTAGAAATTCTCT 60.071 42.308 22.70 12.23 44.66 3.10
3143 3379 7.525360 GCAGATAGCCTAGCTAGAAATTCTCTT 60.525 40.741 22.70 3.13 44.66 2.85
3144 3380 9.019656 CAGATAGCCTAGCTAGAAATTCTCTTA 57.980 37.037 22.70 1.87 44.66 2.10
3145 3381 9.020731 AGATAGCCTAGCTAGAAATTCTCTTAC 57.979 37.037 22.70 2.09 44.66 2.34
3146 3382 6.413783 AGCCTAGCTAGAAATTCTCTTACC 57.586 41.667 22.70 0.00 36.99 2.85
3147 3383 5.900123 AGCCTAGCTAGAAATTCTCTTACCA 59.100 40.000 22.70 0.00 36.99 3.25
3148 3384 6.556874 AGCCTAGCTAGAAATTCTCTTACCAT 59.443 38.462 22.70 0.00 36.99 3.55
3149 3385 7.071824 AGCCTAGCTAGAAATTCTCTTACCATT 59.928 37.037 22.70 0.00 36.99 3.16
3150 3386 7.386573 GCCTAGCTAGAAATTCTCTTACCATTC 59.613 40.741 22.70 0.00 35.41 2.67
3151 3387 8.424918 CCTAGCTAGAAATTCTCTTACCATTCA 58.575 37.037 22.70 0.00 35.41 2.57
3152 3388 9.823647 CTAGCTAGAAATTCTCTTACCATTCAA 57.176 33.333 16.15 0.00 35.41 2.69
3154 3390 9.520515 AGCTAGAAATTCTCTTACCATTCAAAA 57.479 29.630 0.00 0.00 35.41 2.44
3174 3410 4.687901 AAAAATGAGACCAACCCAAAGG 57.312 40.909 0.00 0.00 40.04 3.11
3175 3411 1.632589 AATGAGACCAACCCAAAGGC 58.367 50.000 0.00 0.00 36.11 4.35
3176 3412 0.779997 ATGAGACCAACCCAAAGGCT 59.220 50.000 0.00 0.00 36.11 4.58
3177 3413 1.440618 TGAGACCAACCCAAAGGCTA 58.559 50.000 0.00 0.00 36.11 3.93
3178 3414 1.777878 TGAGACCAACCCAAAGGCTAA 59.222 47.619 0.00 0.00 36.11 3.09
3179 3415 2.160205 GAGACCAACCCAAAGGCTAAC 58.840 52.381 0.00 0.00 36.11 2.34
3180 3416 1.203013 AGACCAACCCAAAGGCTAACC 60.203 52.381 0.00 0.00 36.11 2.85
3181 3417 0.178944 ACCAACCCAAAGGCTAACCC 60.179 55.000 0.00 0.00 36.11 4.11
3182 3418 0.178947 CCAACCCAAAGGCTAACCCA 60.179 55.000 0.00 0.00 36.11 4.51
3183 3419 1.256812 CAACCCAAAGGCTAACCCAG 58.743 55.000 0.00 0.00 36.11 4.45
3191 3427 4.002797 GCTAACCCAGCCAACAGG 57.997 61.111 0.00 0.00 45.23 4.00
3192 3428 1.074951 GCTAACCCAGCCAACAGGT 59.925 57.895 0.00 0.00 45.23 4.00
3193 3429 0.960861 GCTAACCCAGCCAACAGGTC 60.961 60.000 0.00 0.00 45.23 3.85
3194 3430 0.673644 CTAACCCAGCCAACAGGTCG 60.674 60.000 0.00 0.00 32.00 4.79
3195 3431 1.122632 TAACCCAGCCAACAGGTCGA 61.123 55.000 0.00 0.00 32.00 4.20
3196 3432 2.358737 CCCAGCCAACAGGTCGAC 60.359 66.667 7.13 7.13 0.00 4.20
3197 3433 2.738521 CCAGCCAACAGGTCGACG 60.739 66.667 9.92 0.00 0.00 5.12
3198 3434 3.414700 CAGCCAACAGGTCGACGC 61.415 66.667 9.92 6.10 0.00 5.19
3199 3435 4.681978 AGCCAACAGGTCGACGCC 62.682 66.667 9.92 0.00 0.00 5.68
3212 3448 2.267961 ACGCCCCGTCCTCAATTC 59.732 61.111 0.00 0.00 33.69 2.17
3213 3449 2.291043 ACGCCCCGTCCTCAATTCT 61.291 57.895 0.00 0.00 33.69 2.40
3214 3450 1.521681 CGCCCCGTCCTCAATTCTC 60.522 63.158 0.00 0.00 0.00 2.87
3215 3451 1.908483 GCCCCGTCCTCAATTCTCT 59.092 57.895 0.00 0.00 0.00 3.10
3216 3452 0.253327 GCCCCGTCCTCAATTCTCTT 59.747 55.000 0.00 0.00 0.00 2.85
3217 3453 1.485066 GCCCCGTCCTCAATTCTCTTA 59.515 52.381 0.00 0.00 0.00 2.10
3218 3454 2.742204 GCCCCGTCCTCAATTCTCTTAC 60.742 54.545 0.00 0.00 0.00 2.34
3219 3455 2.158943 CCCCGTCCTCAATTCTCTTACC 60.159 54.545 0.00 0.00 0.00 2.85
3220 3456 2.500098 CCCGTCCTCAATTCTCTTACCA 59.500 50.000 0.00 0.00 0.00 3.25
3221 3457 3.134804 CCCGTCCTCAATTCTCTTACCAT 59.865 47.826 0.00 0.00 0.00 3.55
3222 3458 4.384208 CCCGTCCTCAATTCTCTTACCATT 60.384 45.833 0.00 0.00 0.00 3.16
3223 3459 5.163343 CCCGTCCTCAATTCTCTTACCATTA 60.163 44.000 0.00 0.00 0.00 1.90
3224 3460 5.986135 CCGTCCTCAATTCTCTTACCATTAG 59.014 44.000 0.00 0.00 0.00 1.73
3225 3461 6.183360 CCGTCCTCAATTCTCTTACCATTAGA 60.183 42.308 0.00 0.00 0.00 2.10
3226 3462 7.437748 CGTCCTCAATTCTCTTACCATTAGAT 58.562 38.462 0.00 0.00 0.00 1.98
3227 3463 7.596995 CGTCCTCAATTCTCTTACCATTAGATC 59.403 40.741 0.00 0.00 0.00 2.75
3228 3464 8.646900 GTCCTCAATTCTCTTACCATTAGATCT 58.353 37.037 0.00 0.00 0.00 2.75
3229 3465 9.218525 TCCTCAATTCTCTTACCATTAGATCTT 57.781 33.333 0.00 0.00 0.00 2.40
3230 3466 9.487790 CCTCAATTCTCTTACCATTAGATCTTC 57.512 37.037 0.00 0.00 0.00 2.87
3231 3467 9.190858 CTCAATTCTCTTACCATTAGATCTTCG 57.809 37.037 0.00 0.00 0.00 3.79
3232 3468 8.144478 TCAATTCTCTTACCATTAGATCTTCGG 58.856 37.037 0.00 1.57 0.00 4.30
3233 3469 6.406692 TTCTCTTACCATTAGATCTTCGGG 57.593 41.667 0.00 2.43 0.00 5.14
3234 3470 5.702266 TCTCTTACCATTAGATCTTCGGGA 58.298 41.667 0.00 0.00 0.00 5.14
3235 3471 6.315714 TCTCTTACCATTAGATCTTCGGGAT 58.684 40.000 0.00 0.00 37.37 3.85
3236 3472 6.782988 TCTCTTACCATTAGATCTTCGGGATT 59.217 38.462 0.00 0.00 34.33 3.01
3237 3473 7.290248 TCTCTTACCATTAGATCTTCGGGATTT 59.710 37.037 0.00 0.00 34.33 2.17
3238 3474 7.802117 TCTTACCATTAGATCTTCGGGATTTT 58.198 34.615 0.00 0.00 34.33 1.82
3239 3475 7.715249 TCTTACCATTAGATCTTCGGGATTTTG 59.285 37.037 0.00 0.00 34.33 2.44
3240 3476 5.133221 ACCATTAGATCTTCGGGATTTTGG 58.867 41.667 0.00 0.00 34.33 3.28
3241 3477 4.520492 CCATTAGATCTTCGGGATTTTGGG 59.480 45.833 0.00 0.00 34.33 4.12
3242 3478 5.376625 CATTAGATCTTCGGGATTTTGGGA 58.623 41.667 0.00 0.00 34.33 4.37
3243 3479 5.646692 TTAGATCTTCGGGATTTTGGGAT 57.353 39.130 0.00 0.00 34.33 3.85
3244 3480 6.757173 TTAGATCTTCGGGATTTTGGGATA 57.243 37.500 0.00 0.00 34.33 2.59
3245 3481 5.234466 AGATCTTCGGGATTTTGGGATAG 57.766 43.478 0.00 0.00 34.33 2.08
3246 3482 4.660771 AGATCTTCGGGATTTTGGGATAGT 59.339 41.667 0.00 0.00 34.33 2.12
3247 3483 4.855298 TCTTCGGGATTTTGGGATAGTT 57.145 40.909 0.00 0.00 0.00 2.24
3248 3484 4.777463 TCTTCGGGATTTTGGGATAGTTC 58.223 43.478 0.00 0.00 0.00 3.01
3249 3485 4.473559 TCTTCGGGATTTTGGGATAGTTCT 59.526 41.667 0.00 0.00 0.00 3.01
3250 3486 5.664006 TCTTCGGGATTTTGGGATAGTTCTA 59.336 40.000 0.00 0.00 0.00 2.10
3251 3487 6.329197 TCTTCGGGATTTTGGGATAGTTCTAT 59.671 38.462 0.00 0.00 0.00 1.98
3252 3488 6.110411 TCGGGATTTTGGGATAGTTCTATC 57.890 41.667 10.37 10.37 0.00 2.08
3253 3489 5.012768 TCGGGATTTTGGGATAGTTCTATCC 59.987 44.000 23.34 23.34 44.07 2.59
3266 3502 9.713713 GGATAGTTCTATCCCAGACTTTATTTC 57.286 37.037 21.74 0.00 40.02 2.17
3269 3505 7.797062 AGTTCTATCCCAGACTTTATTTCTCC 58.203 38.462 0.00 0.00 31.12 3.71
3270 3506 7.625682 AGTTCTATCCCAGACTTTATTTCTCCT 59.374 37.037 0.00 0.00 31.12 3.69
3271 3507 7.604657 TCTATCCCAGACTTTATTTCTCCTC 57.395 40.000 0.00 0.00 0.00 3.71
3272 3508 7.366226 TCTATCCCAGACTTTATTTCTCCTCT 58.634 38.462 0.00 0.00 0.00 3.69
3273 3509 6.899892 ATCCCAGACTTTATTTCTCCTCTT 57.100 37.500 0.00 0.00 0.00 2.85
3274 3510 6.704056 TCCCAGACTTTATTTCTCCTCTTT 57.296 37.500 0.00 0.00 0.00 2.52
3275 3511 7.091533 TCCCAGACTTTATTTCTCCTCTTTT 57.908 36.000 0.00 0.00 0.00 2.27
3276 3512 7.526918 TCCCAGACTTTATTTCTCCTCTTTTT 58.473 34.615 0.00 0.00 0.00 1.94
3277 3513 7.448469 TCCCAGACTTTATTTCTCCTCTTTTTG 59.552 37.037 0.00 0.00 0.00 2.44
3278 3514 7.231519 CCCAGACTTTATTTCTCCTCTTTTTGT 59.768 37.037 0.00 0.00 0.00 2.83
3279 3515 9.284968 CCAGACTTTATTTCTCCTCTTTTTGTA 57.715 33.333 0.00 0.00 0.00 2.41
3288 3524 9.971922 ATTTCTCCTCTTTTTGTAAATGACTTG 57.028 29.630 0.00 0.00 0.00 3.16
3289 3525 8.519799 TTCTCCTCTTTTTGTAAATGACTTGT 57.480 30.769 0.00 0.00 0.00 3.16
3290 3526 8.154649 TCTCCTCTTTTTGTAAATGACTTGTC 57.845 34.615 0.00 0.00 0.00 3.18
3291 3527 7.993183 TCTCCTCTTTTTGTAAATGACTTGTCT 59.007 33.333 2.35 0.00 0.00 3.41
3292 3528 9.273016 CTCCTCTTTTTGTAAATGACTTGTCTA 57.727 33.333 2.35 0.00 0.00 2.59
3293 3529 9.793259 TCCTCTTTTTGTAAATGACTTGTCTAT 57.207 29.630 2.35 0.00 0.00 1.98
3319 3555 9.905713 TTATTTGAGGAATAGTCTATTTGCTGT 57.094 29.630 6.56 0.00 32.06 4.40
3320 3556 7.849804 TTTGAGGAATAGTCTATTTGCTGTC 57.150 36.000 6.56 1.56 0.00 3.51
3321 3557 6.544928 TGAGGAATAGTCTATTTGCTGTCA 57.455 37.500 6.56 3.74 0.00 3.58
3322 3558 6.577103 TGAGGAATAGTCTATTTGCTGTCAG 58.423 40.000 6.56 0.00 0.00 3.51
3323 3559 6.381133 TGAGGAATAGTCTATTTGCTGTCAGA 59.619 38.462 3.32 0.00 0.00 3.27
3324 3560 7.093333 TGAGGAATAGTCTATTTGCTGTCAGAA 60.093 37.037 3.32 0.00 0.00 3.02
3325 3561 7.624549 AGGAATAGTCTATTTGCTGTCAGAAA 58.375 34.615 3.32 0.00 0.00 2.52
3326 3562 8.103305 AGGAATAGTCTATTTGCTGTCAGAAAA 58.897 33.333 8.50 8.50 0.00 2.29
3327 3563 8.730680 GGAATAGTCTATTTGCTGTCAGAAAAA 58.269 33.333 10.13 6.82 0.00 1.94
3360 3596 5.449999 GGAACCCAGGAATAAATTAACGCAG 60.450 44.000 0.00 0.00 0.00 5.18
3363 3599 5.712917 ACCCAGGAATAAATTAACGCAGAAA 59.287 36.000 0.00 0.00 0.00 2.52
3364 3600 6.127730 ACCCAGGAATAAATTAACGCAGAAAG 60.128 38.462 0.00 0.00 0.00 2.62
3404 3640 7.807907 CCTATTTACTGCTTGGTTTTACAACAG 59.192 37.037 0.00 0.00 36.48 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.856265 CTTGTTTGGCCAGCGTCCTC 61.856 60.000 5.11 0.00 0.00 3.71
3 4 2.644992 CTTGTTTGGCCAGCGTCC 59.355 61.111 5.11 0.00 0.00 4.79
4 5 1.896660 TCCTTGTTTGGCCAGCGTC 60.897 57.895 5.11 0.00 0.00 5.19
5 6 2.193536 GTCCTTGTTTGGCCAGCGT 61.194 57.895 5.11 0.00 0.00 5.07
6 7 1.898574 AGTCCTTGTTTGGCCAGCG 60.899 57.895 5.11 0.00 0.00 5.18
7 8 0.823356 TCAGTCCTTGTTTGGCCAGC 60.823 55.000 5.11 3.69 0.00 4.85
8 9 1.542915 CATCAGTCCTTGTTTGGCCAG 59.457 52.381 5.11 0.00 0.00 4.85
9 10 1.144708 TCATCAGTCCTTGTTTGGCCA 59.855 47.619 0.00 0.00 0.00 5.36
10 11 1.815003 CTCATCAGTCCTTGTTTGGCC 59.185 52.381 0.00 0.00 0.00 5.36
11 12 1.200948 GCTCATCAGTCCTTGTTTGGC 59.799 52.381 0.00 0.00 0.00 4.52
12 13 2.486982 CTGCTCATCAGTCCTTGTTTGG 59.513 50.000 0.00 0.00 38.02 3.28
13 14 3.405831 TCTGCTCATCAGTCCTTGTTTG 58.594 45.455 0.00 0.00 43.32 2.93
14 15 3.777106 TCTGCTCATCAGTCCTTGTTT 57.223 42.857 0.00 0.00 43.32 2.83
15 16 3.262660 TGATCTGCTCATCAGTCCTTGTT 59.737 43.478 0.00 0.00 43.32 2.83
16 17 2.836372 TGATCTGCTCATCAGTCCTTGT 59.164 45.455 0.00 0.00 43.32 3.16
17 18 3.538634 TGATCTGCTCATCAGTCCTTG 57.461 47.619 0.00 0.00 43.32 3.61
18 19 4.774660 AATGATCTGCTCATCAGTCCTT 57.225 40.909 0.00 0.00 44.03 3.36
19 20 5.146298 TCTAATGATCTGCTCATCAGTCCT 58.854 41.667 2.29 0.00 44.03 3.85
20 21 5.243507 TCTCTAATGATCTGCTCATCAGTCC 59.756 44.000 2.29 0.00 44.03 3.85
21 22 6.330004 TCTCTAATGATCTGCTCATCAGTC 57.670 41.667 2.29 0.00 44.03 3.51
22 23 5.279106 GCTCTCTAATGATCTGCTCATCAGT 60.279 44.000 0.00 4.50 44.03 3.41
23 24 5.165676 GCTCTCTAATGATCTGCTCATCAG 58.834 45.833 0.00 0.00 44.03 2.90
24 25 4.587684 TGCTCTCTAATGATCTGCTCATCA 59.412 41.667 0.00 1.25 44.03 3.07
25 26 4.925054 GTGCTCTCTAATGATCTGCTCATC 59.075 45.833 0.00 0.00 44.03 2.92
26 27 4.344390 TGTGCTCTCTAATGATCTGCTCAT 59.656 41.667 0.00 0.00 46.87 2.90
27 28 3.703052 TGTGCTCTCTAATGATCTGCTCA 59.297 43.478 0.00 0.00 38.53 4.26
28 29 4.319139 TGTGCTCTCTAATGATCTGCTC 57.681 45.455 0.00 0.00 0.00 4.26
29 30 4.161942 AGTTGTGCTCTCTAATGATCTGCT 59.838 41.667 0.00 0.00 0.00 4.24
30 31 4.440880 AGTTGTGCTCTCTAATGATCTGC 58.559 43.478 0.00 0.00 0.00 4.26
31 32 4.739228 CGAGTTGTGCTCTCTAATGATCTG 59.261 45.833 0.00 0.00 41.98 2.90
32 33 4.642437 TCGAGTTGTGCTCTCTAATGATCT 59.358 41.667 0.00 0.00 41.98 2.75
33 34 4.926244 TCGAGTTGTGCTCTCTAATGATC 58.074 43.478 0.00 0.00 41.98 2.92
39 40 5.043903 GCATATTTCGAGTTGTGCTCTCTA 58.956 41.667 9.98 0.00 41.98 2.43
54 55 8.181573 TCATCTTTAAACCAAGACGCATATTTC 58.818 33.333 0.00 0.00 35.57 2.17
59 60 4.759693 TGTCATCTTTAAACCAAGACGCAT 59.240 37.500 0.00 0.00 35.57 4.73
64 65 8.690203 TTCAGAATGTCATCTTTAAACCAAGA 57.310 30.769 0.00 0.00 35.70 3.02
139 140 0.593128 GTCGATATTGGGCCATGCAC 59.407 55.000 7.26 0.00 0.00 4.57
156 157 6.074088 CCATATGCTTCATAAGTCTTGACGTC 60.074 42.308 9.11 9.11 29.74 4.34
181 182 8.604035 CGGTATAGAATGTGTATCCATTTATGC 58.396 37.037 0.00 0.00 35.24 3.14
190 191 6.570672 TGTCCTCGGTATAGAATGTGTATC 57.429 41.667 0.00 0.00 0.00 2.24
192 193 7.389884 GTCTATGTCCTCGGTATAGAATGTGTA 59.610 40.741 11.44 0.00 35.77 2.90
246 247 4.408821 GGCCTGCATCGTCACCCA 62.409 66.667 0.00 0.00 0.00 4.51
253 254 3.494378 CAGTGAAGGCCTGCATCG 58.506 61.111 19.04 7.40 0.00 3.84
269 270 5.939764 AGTATCTCCTGTTTGTATCAGCA 57.060 39.130 0.00 0.00 0.00 4.41
281 282 1.202952 AGCCTCCCGTAGTATCTCCTG 60.203 57.143 0.00 0.00 0.00 3.86
302 303 5.310409 AGTCAAGTTCCCAGATTTCTTCA 57.690 39.130 0.00 0.00 0.00 3.02
313 314 1.555533 CCCCTGAGTAGTCAAGTTCCC 59.444 57.143 1.11 0.00 30.14 3.97
328 329 0.404040 TTGCTTCTTGGTACCCCCTG 59.596 55.000 10.07 0.00 0.00 4.45
329 330 1.005924 CATTGCTTCTTGGTACCCCCT 59.994 52.381 10.07 0.00 0.00 4.79
357 363 0.107214 GACATTCCTTGCCCATCCGA 60.107 55.000 0.00 0.00 0.00 4.55
359 365 1.684983 CATGACATTCCTTGCCCATCC 59.315 52.381 0.00 0.00 0.00 3.51
360 366 1.684983 CCATGACATTCCTTGCCCATC 59.315 52.381 0.00 0.00 0.00 3.51
408 414 7.283127 CAGCATTGTTAGTCTTTGTGGGTATAT 59.717 37.037 0.00 0.00 0.00 0.86
432 438 1.135575 GGCGCTGATTCCTTTTCACAG 60.136 52.381 7.64 0.00 0.00 3.66
454 460 4.626287 CGGCTAATACCCATGGCTCATATT 60.626 45.833 6.09 9.64 0.00 1.28
463 469 5.305585 ACAGTTTATCGGCTAATACCCATG 58.694 41.667 0.00 0.00 0.00 3.66
464 470 5.512576 GGACAGTTTATCGGCTAATACCCAT 60.513 44.000 0.00 0.00 0.00 4.00
469 475 5.617528 TTGGGACAGTTTATCGGCTAATA 57.382 39.130 0.00 0.00 42.39 0.98
483 489 0.388649 CGGAGTCGAGTTTGGGACAG 60.389 60.000 0.00 0.00 38.12 3.51
499 505 0.250234 CTCCCATTGACTTCTGCGGA 59.750 55.000 0.00 0.00 0.00 5.54
537 543 1.751552 CGAACCGTTCCTATCGCTAC 58.248 55.000 5.67 0.00 0.00 3.58
668 679 7.013750 TGGTGTGCACTCTTCTCTCTTATATAG 59.986 40.741 19.41 0.00 0.00 1.31
669 680 6.833933 TGGTGTGCACTCTTCTCTCTTATATA 59.166 38.462 19.41 0.00 0.00 0.86
670 681 5.658634 TGGTGTGCACTCTTCTCTCTTATAT 59.341 40.000 19.41 0.00 0.00 0.86
671 682 5.016831 TGGTGTGCACTCTTCTCTCTTATA 58.983 41.667 19.41 0.00 0.00 0.98
697 762 8.454894 GTGCCCTCTTCTCTCTTAAAAATAAAG 58.545 37.037 0.00 0.00 0.00 1.85
698 763 7.942341 TGTGCCCTCTTCTCTCTTAAAAATAAA 59.058 33.333 0.00 0.00 0.00 1.40
701 766 5.707764 GTGTGCCCTCTTCTCTCTTAAAAAT 59.292 40.000 0.00 0.00 0.00 1.82
719 788 1.379642 GCCAAGCTAGATGGTGTGCC 61.380 60.000 14.40 0.00 40.23 5.01
747 816 1.791103 TTGGGCTCAAACGGCGAAAG 61.791 55.000 16.62 6.05 0.00 2.62
790 859 3.136123 CAGAGGTTGCGGCATGGG 61.136 66.667 2.28 0.00 0.00 4.00
791 860 2.046023 TCAGAGGTTGCGGCATGG 60.046 61.111 2.28 0.00 0.00 3.66
793 862 0.179062 GATCTCAGAGGTTGCGGCAT 60.179 55.000 2.28 0.00 0.00 4.40
794 863 1.219124 GATCTCAGAGGTTGCGGCA 59.781 57.895 0.00 0.00 0.00 5.69
795 864 0.391661 TTGATCTCAGAGGTTGCGGC 60.392 55.000 0.00 0.00 0.00 6.53
796 865 1.649664 CTTGATCTCAGAGGTTGCGG 58.350 55.000 0.00 0.00 0.00 5.69
797 866 1.005340 GCTTGATCTCAGAGGTTGCG 58.995 55.000 0.00 0.00 0.00 4.85
798 867 1.377536 GGCTTGATCTCAGAGGTTGC 58.622 55.000 0.00 0.00 0.00 4.17
799 868 1.407989 GGGGCTTGATCTCAGAGGTTG 60.408 57.143 0.00 0.00 0.00 3.77
800 869 0.915364 GGGGCTTGATCTCAGAGGTT 59.085 55.000 0.00 0.00 0.00 3.50
801 870 0.985490 GGGGGCTTGATCTCAGAGGT 60.985 60.000 0.00 0.00 0.00 3.85
802 871 1.835693 GGGGGCTTGATCTCAGAGG 59.164 63.158 0.00 0.00 0.00 3.69
817 886 2.442643 GGCACATGATGGTGGGGG 60.443 66.667 0.00 0.00 39.19 5.40
818 887 2.442643 GGGCACATGATGGTGGGG 60.443 66.667 0.00 0.00 39.19 4.96
819 888 1.755395 CTGGGCACATGATGGTGGG 60.755 63.158 0.00 0.00 39.19 4.61
820 889 1.755395 CCTGGGCACATGATGGTGG 60.755 63.158 0.00 0.00 39.19 4.61
821 890 0.323633 TTCCTGGGCACATGATGGTG 60.324 55.000 0.00 0.00 41.72 4.17
822 891 0.323725 GTTCCTGGGCACATGATGGT 60.324 55.000 0.00 0.00 0.00 3.55
823 892 1.039233 GGTTCCTGGGCACATGATGG 61.039 60.000 0.00 0.00 0.00 3.51
824 893 1.039233 GGGTTCCTGGGCACATGATG 61.039 60.000 0.00 0.00 0.00 3.07
825 894 1.217057 AGGGTTCCTGGGCACATGAT 61.217 55.000 0.00 0.00 29.57 2.45
997 1066 2.637947 GAACTTGAGCTTCCTCATCCC 58.362 52.381 0.00 0.00 46.84 3.85
1042 1111 0.843309 TTCCACAGCAGGAAGTTGGA 59.157 50.000 1.64 0.00 42.56 3.53
1053 1122 4.785453 CCCTCCCGCTTCCACAGC 62.785 72.222 0.00 0.00 46.31 4.40
1092 1161 1.359117 GAGGCTGTATCGCTGCGTA 59.641 57.895 22.48 10.76 42.12 4.42
1101 1170 1.384989 CCCTGTCGACGAGGCTGTAT 61.385 60.000 21.65 0.00 0.00 2.29
1154 1223 1.356494 GGAGGAAGGGAGGGGATTGG 61.356 65.000 0.00 0.00 0.00 3.16
1167 1236 1.002274 GCAGGAGGAGAGGGAGGAA 59.998 63.158 0.00 0.00 0.00 3.36
1195 1307 0.101399 CAGCCGCGAGATAGAACTGT 59.899 55.000 8.23 0.00 0.00 3.55
1202 1314 0.249868 CAAATCCCAGCCGCGAGATA 60.250 55.000 8.23 0.00 0.00 1.98
1220 1362 1.532437 CTTGAATCAACACGCTCAGCA 59.468 47.619 0.00 0.00 0.00 4.41
1245 1387 3.047280 CGCCCAGCAAACGCTACA 61.047 61.111 0.00 0.00 37.77 2.74
1271 1413 4.813161 AGCAATCACAGGATCGATTAGTTG 59.187 41.667 0.00 0.00 31.88 3.16
1293 1438 2.809601 GTACCTGCGGCGACACAG 60.810 66.667 12.98 8.73 40.24 3.66
1294 1439 3.153270 TTGTACCTGCGGCGACACA 62.153 57.895 12.98 3.02 0.00 3.72
1302 1447 0.446222 CAAATCCCGTTGTACCTGCG 59.554 55.000 0.00 0.00 0.00 5.18
1323 1468 2.523507 CGAGCTTCTGCGCCATCAG 61.524 63.158 4.18 0.00 45.42 2.90
1403 1548 3.364664 CGGCGTCTTACAGCTTATCGATA 60.365 47.826 0.00 0.00 0.00 2.92
1573 1720 4.623932 AAAGCCTCACACATCTCTAACA 57.376 40.909 0.00 0.00 0.00 2.41
1626 1773 1.068333 TGACGTTCGGTACTTACCAGC 60.068 52.381 6.25 0.00 46.80 4.85
1696 1843 1.202758 ACGAAAGTTGCCATCCTCACA 60.203 47.619 0.00 0.00 46.40 3.58
1721 1890 7.010091 CGGCAAGTTTCTGTCAAAAATAAACTT 59.990 33.333 0.00 0.00 46.07 2.66
1748 1917 4.703575 AGGATGACAATTTCCAGTGACATG 59.296 41.667 0.00 0.00 34.29 3.21
1749 1918 4.927049 AGGATGACAATTTCCAGTGACAT 58.073 39.130 0.00 0.00 36.34 3.06
1867 2044 6.973474 AGTAGTGCTAACATATGTCGAAACTC 59.027 38.462 9.23 6.11 0.00 3.01
1868 2045 6.864342 AGTAGTGCTAACATATGTCGAAACT 58.136 36.000 9.23 12.83 0.00 2.66
1869 2046 7.274904 TCAAGTAGTGCTAACATATGTCGAAAC 59.725 37.037 9.23 6.24 0.00 2.78
1870 2047 7.317390 TCAAGTAGTGCTAACATATGTCGAAA 58.683 34.615 9.23 0.00 0.00 3.46
1871 2048 6.859017 TCAAGTAGTGCTAACATATGTCGAA 58.141 36.000 9.23 0.00 0.00 3.71
1872 2049 6.445357 TCAAGTAGTGCTAACATATGTCGA 57.555 37.500 9.23 0.00 0.00 4.20
1873 2050 7.700322 AATCAAGTAGTGCTAACATATGTCG 57.300 36.000 9.23 4.83 0.00 4.35
2197 2423 2.158534 GGAGAGAGATAGAGACCTGGCA 60.159 54.545 0.00 0.00 0.00 4.92
2222 2450 9.101655 GCAAGCAAAGGAAATCATTGTTATAAT 57.898 29.630 0.00 0.00 0.00 1.28
2244 2472 8.598075 GGAAAATAAAATGCACTATTCAGCAAG 58.402 33.333 0.00 0.00 44.88 4.01
2246 2474 7.609960 TGGAAAATAAAATGCACTATTCAGCA 58.390 30.769 0.00 0.00 45.92 4.41
2282 2512 9.337091 GTTTCATAGCAATAAACGCTTTCTTTA 57.663 29.630 0.00 0.00 40.96 1.85
2307 2537 6.070824 TGACACATACATAGGTCATTGAGTGT 60.071 38.462 0.00 0.00 38.97 3.55
2321 2551 9.905713 AAGGTAAGTGAAATATGACACATACAT 57.094 29.630 19.56 14.33 40.53 2.29
2346 2576 8.178964 CGCCTACAATAGTTTAGCAAACAATAA 58.821 33.333 12.28 0.00 43.79 1.40
2490 2720 2.038952 CTCCATGTTCCTGGTCACAAGA 59.961 50.000 5.73 5.56 37.57 3.02
2538 2768 7.274447 ACTCCATGATCTTCTTCTTGATCTTC 58.726 38.462 0.00 0.00 39.63 2.87
2700 2930 4.042934 AGCTTCCCAACACATAACTACCTT 59.957 41.667 0.00 0.00 0.00 3.50
2711 2941 2.290641 CACACAAGTAGCTTCCCAACAC 59.709 50.000 0.00 0.00 0.00 3.32
2717 2947 3.126000 GCTTCATCACACAAGTAGCTTCC 59.874 47.826 0.00 0.00 0.00 3.46
2718 2948 3.999663 AGCTTCATCACACAAGTAGCTTC 59.000 43.478 0.00 0.00 34.05 3.86
2738 2968 3.621268 TCTGCATGTTATGGACGTTTAGC 59.379 43.478 0.00 0.00 0.00 3.09
2739 2969 5.741425 CATCTGCATGTTATGGACGTTTAG 58.259 41.667 0.00 0.00 0.00 1.85
2740 2970 4.035091 GCATCTGCATGTTATGGACGTTTA 59.965 41.667 0.00 0.00 41.59 2.01
2741 2971 3.181497 GCATCTGCATGTTATGGACGTTT 60.181 43.478 0.00 0.00 41.59 3.60
2744 2974 1.265095 GGCATCTGCATGTTATGGACG 59.735 52.381 4.33 0.00 44.36 4.79
2745 2975 1.265095 CGGCATCTGCATGTTATGGAC 59.735 52.381 4.33 0.00 44.36 4.02
2747 2977 1.311859 ACGGCATCTGCATGTTATGG 58.688 50.000 4.33 0.00 44.36 2.74
2749 2979 4.388485 TGATTACGGCATCTGCATGTTAT 58.612 39.130 4.33 1.82 44.36 1.89
2750 2980 3.802866 TGATTACGGCATCTGCATGTTA 58.197 40.909 4.33 0.00 44.36 2.41
2751 2981 2.615447 CTGATTACGGCATCTGCATGTT 59.385 45.455 4.33 0.00 44.36 2.71
2753 2983 2.216046 ACTGATTACGGCATCTGCATG 58.784 47.619 4.33 0.00 44.36 4.06
2759 2990 5.523916 ACAAGTATGAACTGATTACGGCATC 59.476 40.000 0.00 0.00 35.62 3.91
2765 2996 5.990668 AGGGGACAAGTATGAACTGATTAC 58.009 41.667 0.00 0.00 35.62 1.89
2792 3024 1.202915 TCAGCATGTGCAAGGGAAAGA 60.203 47.619 7.83 0.00 45.16 2.52
2897 3129 4.307032 ACCACAGAGCTCAATTTGGTAT 57.693 40.909 20.77 4.28 35.55 2.73
2900 3132 5.452078 TTTTACCACAGAGCTCAATTTGG 57.548 39.130 17.77 17.28 0.00 3.28
2933 3167 2.731572 ACAGGAAGATGCAGGGAATTG 58.268 47.619 0.00 0.00 0.00 2.32
3064 3300 5.827797 ACAAAGTAAGTCTCTGCAAATTCCA 59.172 36.000 0.00 0.00 0.00 3.53
3065 3301 6.145535 CACAAAGTAAGTCTCTGCAAATTCC 58.854 40.000 0.00 0.00 0.00 3.01
3066 3302 5.626955 GCACAAAGTAAGTCTCTGCAAATTC 59.373 40.000 0.00 0.00 0.00 2.17
3067 3303 5.067674 TGCACAAAGTAAGTCTCTGCAAATT 59.932 36.000 0.00 0.00 32.08 1.82
3068 3304 4.580167 TGCACAAAGTAAGTCTCTGCAAAT 59.420 37.500 0.00 0.00 32.08 2.32
3069 3305 3.944650 TGCACAAAGTAAGTCTCTGCAAA 59.055 39.130 0.00 0.00 32.08 3.68
3070 3306 3.540617 TGCACAAAGTAAGTCTCTGCAA 58.459 40.909 0.00 0.00 32.08 4.08
3071 3307 3.192541 TGCACAAAGTAAGTCTCTGCA 57.807 42.857 0.00 0.00 32.36 4.41
3072 3308 4.023707 ACAATGCACAAAGTAAGTCTCTGC 60.024 41.667 0.00 0.00 0.00 4.26
3073 3309 5.679734 ACAATGCACAAAGTAAGTCTCTG 57.320 39.130 0.00 0.00 0.00 3.35
3074 3310 6.699575 AAACAATGCACAAAGTAAGTCTCT 57.300 33.333 0.00 0.00 0.00 3.10
3075 3311 6.140737 CGAAAACAATGCACAAAGTAAGTCTC 59.859 38.462 0.00 0.00 0.00 3.36
3076 3312 5.971202 CGAAAACAATGCACAAAGTAAGTCT 59.029 36.000 0.00 0.00 0.00 3.24
3077 3313 5.331532 GCGAAAACAATGCACAAAGTAAGTC 60.332 40.000 0.00 0.00 0.00 3.01
3078 3314 4.502645 GCGAAAACAATGCACAAAGTAAGT 59.497 37.500 0.00 0.00 0.00 2.24
3079 3315 4.373914 CGCGAAAACAATGCACAAAGTAAG 60.374 41.667 0.00 0.00 0.00 2.34
3080 3316 3.483922 CGCGAAAACAATGCACAAAGTAA 59.516 39.130 0.00 0.00 0.00 2.24
3081 3317 3.039405 CGCGAAAACAATGCACAAAGTA 58.961 40.909 0.00 0.00 0.00 2.24
3082 3318 1.851666 CGCGAAAACAATGCACAAAGT 59.148 42.857 0.00 0.00 0.00 2.66
3083 3319 1.189884 CCGCGAAAACAATGCACAAAG 59.810 47.619 8.23 0.00 0.00 2.77
3084 3320 1.202302 TCCGCGAAAACAATGCACAAA 60.202 42.857 8.23 0.00 0.00 2.83
3085 3321 0.382158 TCCGCGAAAACAATGCACAA 59.618 45.000 8.23 0.00 0.00 3.33
3086 3322 0.040514 CTCCGCGAAAACAATGCACA 60.041 50.000 8.23 0.00 0.00 4.57
3087 3323 1.337110 GCTCCGCGAAAACAATGCAC 61.337 55.000 8.23 0.00 0.00 4.57
3088 3324 1.081509 GCTCCGCGAAAACAATGCA 60.082 52.632 8.23 0.00 0.00 3.96
3089 3325 3.754091 GCTCCGCGAAAACAATGC 58.246 55.556 8.23 0.00 0.00 3.56
3100 3336 1.951631 GCTACCTCATTCGCTCCGC 60.952 63.158 0.00 0.00 0.00 5.54
3101 3337 0.596083 CTGCTACCTCATTCGCTCCG 60.596 60.000 0.00 0.00 0.00 4.63
3102 3338 0.747255 TCTGCTACCTCATTCGCTCC 59.253 55.000 0.00 0.00 0.00 4.70
3103 3339 2.810439 ATCTGCTACCTCATTCGCTC 57.190 50.000 0.00 0.00 0.00 5.03
3104 3340 2.029470 GCTATCTGCTACCTCATTCGCT 60.029 50.000 0.00 0.00 38.95 4.93
3105 3341 2.333014 GCTATCTGCTACCTCATTCGC 58.667 52.381 0.00 0.00 38.95 4.70
3106 3342 2.560542 AGGCTATCTGCTACCTCATTCG 59.439 50.000 0.00 0.00 42.39 3.34
3107 3343 4.381505 GCTAGGCTATCTGCTACCTCATTC 60.382 50.000 0.00 0.00 42.39 2.67
3108 3344 3.513515 GCTAGGCTATCTGCTACCTCATT 59.486 47.826 0.00 0.00 42.39 2.57
3109 3345 3.096092 GCTAGGCTATCTGCTACCTCAT 58.904 50.000 0.00 0.00 42.39 2.90
3110 3346 2.109128 AGCTAGGCTATCTGCTACCTCA 59.891 50.000 5.07 0.00 42.39 3.86
3111 3347 2.802719 AGCTAGGCTATCTGCTACCTC 58.197 52.381 5.07 0.00 42.39 3.85
3112 3348 2.990740 AGCTAGGCTATCTGCTACCT 57.009 50.000 5.07 0.00 42.39 3.08
3113 3349 3.958018 TCTAGCTAGGCTATCTGCTACC 58.042 50.000 20.58 0.00 40.54 3.18
3114 3350 5.968528 TTTCTAGCTAGGCTATCTGCTAC 57.031 43.478 20.58 0.00 40.54 3.58
3115 3351 6.951198 AGAATTTCTAGCTAGGCTATCTGCTA 59.049 38.462 20.58 10.29 40.54 3.49
3116 3352 5.779771 AGAATTTCTAGCTAGGCTATCTGCT 59.220 40.000 20.58 9.70 40.54 4.24
3117 3353 6.036577 AGAATTTCTAGCTAGGCTATCTGC 57.963 41.667 20.58 2.22 40.54 4.26
3118 3354 7.466746 AGAGAATTTCTAGCTAGGCTATCTG 57.533 40.000 20.58 0.00 40.54 2.90
3119 3355 9.020731 GTAAGAGAATTTCTAGCTAGGCTATCT 57.979 37.037 20.58 17.45 40.54 1.98
3120 3356 8.248253 GGTAAGAGAATTTCTAGCTAGGCTATC 58.752 40.741 20.58 13.52 40.54 2.08
3121 3357 7.730784 TGGTAAGAGAATTTCTAGCTAGGCTAT 59.269 37.037 20.58 8.79 40.54 2.97
3122 3358 7.067421 TGGTAAGAGAATTTCTAGCTAGGCTA 58.933 38.462 20.58 6.85 40.44 3.93
3123 3359 5.900123 TGGTAAGAGAATTTCTAGCTAGGCT 59.100 40.000 20.58 10.13 43.41 4.58
3124 3360 6.163135 TGGTAAGAGAATTTCTAGCTAGGC 57.837 41.667 20.58 5.78 34.14 3.93
3125 3361 8.424918 TGAATGGTAAGAGAATTTCTAGCTAGG 58.575 37.037 20.58 2.51 34.14 3.02
3126 3362 9.823647 TTGAATGGTAAGAGAATTTCTAGCTAG 57.176 33.333 15.01 15.01 34.14 3.42
3128 3364 9.520515 TTTTGAATGGTAAGAGAATTTCTAGCT 57.479 29.630 0.00 0.00 34.14 3.32
3153 3389 3.181455 GCCTTTGGGTTGGTCTCATTTTT 60.181 43.478 0.00 0.00 34.45 1.94
3154 3390 2.368548 GCCTTTGGGTTGGTCTCATTTT 59.631 45.455 0.00 0.00 34.45 1.82
3155 3391 1.970640 GCCTTTGGGTTGGTCTCATTT 59.029 47.619 0.00 0.00 34.45 2.32
3156 3392 1.147817 AGCCTTTGGGTTGGTCTCATT 59.852 47.619 0.00 0.00 34.45 2.57
3157 3393 0.779997 AGCCTTTGGGTTGGTCTCAT 59.220 50.000 0.00 0.00 34.45 2.90
3158 3394 1.440618 TAGCCTTTGGGTTGGTCTCA 58.559 50.000 0.00 0.00 34.28 3.27
3159 3395 2.160205 GTTAGCCTTTGGGTTGGTCTC 58.840 52.381 0.00 0.00 34.28 3.36
3160 3396 1.203013 GGTTAGCCTTTGGGTTGGTCT 60.203 52.381 0.00 0.00 34.28 3.85
3161 3397 1.254026 GGTTAGCCTTTGGGTTGGTC 58.746 55.000 0.00 0.00 34.28 4.02
3162 3398 0.178944 GGGTTAGCCTTTGGGTTGGT 60.179 55.000 0.00 0.00 34.28 3.67
3163 3399 0.178947 TGGGTTAGCCTTTGGGTTGG 60.179 55.000 1.07 0.00 34.28 3.77
3164 3400 1.256812 CTGGGTTAGCCTTTGGGTTG 58.743 55.000 1.07 0.00 34.28 3.77
3165 3401 3.765968 CTGGGTTAGCCTTTGGGTT 57.234 52.632 1.07 0.00 34.28 4.11
3175 3411 0.673644 CGACCTGTTGGCTGGGTTAG 60.674 60.000 0.00 0.00 37.95 2.34
3176 3412 1.122632 TCGACCTGTTGGCTGGGTTA 61.123 55.000 0.00 0.00 37.95 2.85
3177 3413 2.113139 CGACCTGTTGGCTGGGTT 59.887 61.111 0.00 0.00 37.95 4.11
3178 3414 2.847234 TCGACCTGTTGGCTGGGT 60.847 61.111 0.00 0.00 37.95 4.51
3179 3415 2.358737 GTCGACCTGTTGGCTGGG 60.359 66.667 3.51 0.00 37.95 4.45
3180 3416 2.738521 CGTCGACCTGTTGGCTGG 60.739 66.667 10.58 0.00 39.33 4.85
3181 3417 3.414700 GCGTCGACCTGTTGGCTG 61.415 66.667 10.58 0.00 36.63 4.85
3182 3418 4.681978 GGCGTCGACCTGTTGGCT 62.682 66.667 10.58 0.00 36.63 4.75
3195 3431 2.240162 GAGAATTGAGGACGGGGCGT 62.240 60.000 0.00 0.00 45.10 5.68
3196 3432 1.521681 GAGAATTGAGGACGGGGCG 60.522 63.158 0.00 0.00 0.00 6.13
3197 3433 0.253327 AAGAGAATTGAGGACGGGGC 59.747 55.000 0.00 0.00 0.00 5.80
3198 3434 2.158943 GGTAAGAGAATTGAGGACGGGG 60.159 54.545 0.00 0.00 0.00 5.73
3199 3435 2.500098 TGGTAAGAGAATTGAGGACGGG 59.500 50.000 0.00 0.00 0.00 5.28
3200 3436 3.887621 TGGTAAGAGAATTGAGGACGG 57.112 47.619 0.00 0.00 0.00 4.79
3201 3437 6.806751 TCTAATGGTAAGAGAATTGAGGACG 58.193 40.000 0.00 0.00 0.00 4.79
3202 3438 8.646900 AGATCTAATGGTAAGAGAATTGAGGAC 58.353 37.037 0.00 0.00 0.00 3.85
3203 3439 8.789767 AGATCTAATGGTAAGAGAATTGAGGA 57.210 34.615 0.00 0.00 0.00 3.71
3204 3440 9.487790 GAAGATCTAATGGTAAGAGAATTGAGG 57.512 37.037 0.00 0.00 0.00 3.86
3205 3441 9.190858 CGAAGATCTAATGGTAAGAGAATTGAG 57.809 37.037 0.00 0.00 0.00 3.02
3206 3442 8.144478 CCGAAGATCTAATGGTAAGAGAATTGA 58.856 37.037 0.00 0.00 0.00 2.57
3207 3443 7.386299 CCCGAAGATCTAATGGTAAGAGAATTG 59.614 40.741 0.00 0.00 0.00 2.32
3208 3444 7.290248 TCCCGAAGATCTAATGGTAAGAGAATT 59.710 37.037 0.00 0.00 0.00 2.17
3209 3445 6.782988 TCCCGAAGATCTAATGGTAAGAGAAT 59.217 38.462 0.00 0.00 0.00 2.40
3210 3446 6.134055 TCCCGAAGATCTAATGGTAAGAGAA 58.866 40.000 0.00 0.00 0.00 2.87
3211 3447 5.702266 TCCCGAAGATCTAATGGTAAGAGA 58.298 41.667 0.00 0.00 0.00 3.10
3212 3448 6.597832 ATCCCGAAGATCTAATGGTAAGAG 57.402 41.667 0.00 0.00 0.00 2.85
3213 3449 6.996180 AATCCCGAAGATCTAATGGTAAGA 57.004 37.500 0.00 0.00 32.47 2.10
3214 3450 7.041098 CCAAAATCCCGAAGATCTAATGGTAAG 60.041 40.741 0.00 0.00 32.47 2.34
3215 3451 6.770785 CCAAAATCCCGAAGATCTAATGGTAA 59.229 38.462 0.00 0.00 32.47 2.85
3216 3452 6.296026 CCAAAATCCCGAAGATCTAATGGTA 58.704 40.000 0.00 0.00 32.47 3.25
3217 3453 5.133221 CCAAAATCCCGAAGATCTAATGGT 58.867 41.667 0.00 0.00 32.47 3.55
3218 3454 4.520492 CCCAAAATCCCGAAGATCTAATGG 59.480 45.833 0.00 0.00 32.47 3.16
3219 3455 5.376625 TCCCAAAATCCCGAAGATCTAATG 58.623 41.667 0.00 0.00 32.47 1.90
3220 3456 5.646692 TCCCAAAATCCCGAAGATCTAAT 57.353 39.130 0.00 0.00 32.47 1.73
3221 3457 5.646692 ATCCCAAAATCCCGAAGATCTAA 57.353 39.130 0.00 0.00 32.47 2.10
3222 3458 5.844516 ACTATCCCAAAATCCCGAAGATCTA 59.155 40.000 0.00 0.00 32.47 1.98
3223 3459 4.660771 ACTATCCCAAAATCCCGAAGATCT 59.339 41.667 0.00 0.00 32.47 2.75
3224 3460 4.974399 ACTATCCCAAAATCCCGAAGATC 58.026 43.478 0.00 0.00 32.47 2.75
3225 3461 5.132816 AGAACTATCCCAAAATCCCGAAGAT 59.867 40.000 0.00 0.00 36.48 2.40
3226 3462 4.473559 AGAACTATCCCAAAATCCCGAAGA 59.526 41.667 0.00 0.00 0.00 2.87
3227 3463 4.781934 AGAACTATCCCAAAATCCCGAAG 58.218 43.478 0.00 0.00 0.00 3.79
3228 3464 4.855298 AGAACTATCCCAAAATCCCGAA 57.145 40.909 0.00 0.00 0.00 4.30
3229 3465 6.110411 GATAGAACTATCCCAAAATCCCGA 57.890 41.667 9.84 0.00 36.75 5.14
3243 3479 8.925338 GGAGAAATAAAGTCTGGGATAGAACTA 58.075 37.037 0.00 0.00 37.12 2.24
3244 3480 7.625682 AGGAGAAATAAAGTCTGGGATAGAACT 59.374 37.037 0.00 0.00 37.12 3.01
3245 3481 7.797062 AGGAGAAATAAAGTCTGGGATAGAAC 58.203 38.462 0.00 0.00 37.12 3.01
3246 3482 7.846823 AGAGGAGAAATAAAGTCTGGGATAGAA 59.153 37.037 0.00 0.00 37.12 2.10
3247 3483 7.366226 AGAGGAGAAATAAAGTCTGGGATAGA 58.634 38.462 0.00 0.00 0.00 1.98
3248 3484 7.610580 AGAGGAGAAATAAAGTCTGGGATAG 57.389 40.000 0.00 0.00 0.00 2.08
3249 3485 7.996758 AAGAGGAGAAATAAAGTCTGGGATA 57.003 36.000 0.00 0.00 0.00 2.59
3250 3486 6.899892 AAGAGGAGAAATAAAGTCTGGGAT 57.100 37.500 0.00 0.00 0.00 3.85
3251 3487 6.704056 AAAGAGGAGAAATAAAGTCTGGGA 57.296 37.500 0.00 0.00 0.00 4.37
3252 3488 7.231519 ACAAAAAGAGGAGAAATAAAGTCTGGG 59.768 37.037 0.00 0.00 0.00 4.45
3253 3489 8.171164 ACAAAAAGAGGAGAAATAAAGTCTGG 57.829 34.615 0.00 0.00 0.00 3.86
3262 3498 9.971922 CAAGTCATTTACAAAAAGAGGAGAAAT 57.028 29.630 0.00 0.00 0.00 2.17
3263 3499 8.966868 ACAAGTCATTTACAAAAAGAGGAGAAA 58.033 29.630 0.00 0.00 0.00 2.52
3264 3500 8.519799 ACAAGTCATTTACAAAAAGAGGAGAA 57.480 30.769 0.00 0.00 0.00 2.87
3265 3501 7.993183 AGACAAGTCATTTACAAAAAGAGGAGA 59.007 33.333 2.72 0.00 0.00 3.71
3266 3502 8.159344 AGACAAGTCATTTACAAAAAGAGGAG 57.841 34.615 2.72 0.00 0.00 3.69
3267 3503 9.793259 ATAGACAAGTCATTTACAAAAAGAGGA 57.207 29.630 2.72 0.00 0.00 3.71
3293 3529 9.905713 ACAGCAAATAGACTATTCCTCAAATAA 57.094 29.630 8.17 0.00 29.44 1.40
3294 3530 9.547753 GACAGCAAATAGACTATTCCTCAAATA 57.452 33.333 8.17 0.00 0.00 1.40
3295 3531 8.049117 TGACAGCAAATAGACTATTCCTCAAAT 58.951 33.333 8.17 0.00 0.00 2.32
3296 3532 7.394016 TGACAGCAAATAGACTATTCCTCAAA 58.606 34.615 8.17 0.00 0.00 2.69
3297 3533 6.946340 TGACAGCAAATAGACTATTCCTCAA 58.054 36.000 8.17 0.00 0.00 3.02
3298 3534 6.381133 TCTGACAGCAAATAGACTATTCCTCA 59.619 38.462 8.17 4.75 0.00 3.86
3299 3535 6.810911 TCTGACAGCAAATAGACTATTCCTC 58.189 40.000 8.17 1.66 0.00 3.71
3300 3536 6.798427 TCTGACAGCAAATAGACTATTCCT 57.202 37.500 8.17 5.55 0.00 3.36
3301 3537 7.849804 TTTCTGACAGCAAATAGACTATTCC 57.150 36.000 8.17 3.49 0.00 3.01
3360 3596 9.251792 GTAAATAGGAGAAACTAGCTAGCTTTC 57.748 37.037 24.88 25.47 0.00 2.62
3363 3599 7.470841 GCAGTAAATAGGAGAAACTAGCTAGCT 60.471 40.741 23.12 23.12 0.00 3.32
3364 3600 6.643360 GCAGTAAATAGGAGAAACTAGCTAGC 59.357 42.308 20.91 6.62 0.00 3.42
3404 3640 2.667473 AGCCAATACACCTGTACGTC 57.333 50.000 0.00 0.00 32.72 4.34
3562 3798 3.546724 TCCCAGTGATTTGTTTCGTCAA 58.453 40.909 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.