Multiple sequence alignment - TraesCS2D01G495500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G495500 chr2D 100.000 2459 0 0 1 2459 592273139 592275597 0.000000e+00 4542.0
1 TraesCS2D01G495500 chr2D 85.222 406 27 16 928 1330 592115456 592115831 1.070000e-103 387.0
2 TraesCS2D01G495500 chr2D 79.441 608 53 43 769 1330 592030958 592031539 5.000000e-97 364.0
3 TraesCS2D01G495500 chr2D 84.236 406 31 14 928 1330 592080401 592080776 5.000000e-97 364.0
4 TraesCS2D01G495500 chr2D 84.236 406 31 16 928 1330 592092221 592092596 5.000000e-97 364.0
5 TraesCS2D01G495500 chr2B 90.750 2346 113 38 1 2298 717895066 717897355 0.000000e+00 3035.0
6 TraesCS2D01G495500 chr2B 80.070 572 62 29 783 1330 717678458 717679001 6.420000e-101 377.0
7 TraesCS2D01G495500 chr2A 92.781 1219 30 26 694 1893 726755778 726756957 0.000000e+00 1711.0
8 TraesCS2D01G495500 chr2A 91.298 701 58 3 1 699 726755002 726755701 0.000000e+00 953.0
9 TraesCS2D01G495500 chr2A 87.196 453 26 10 1924 2344 726756949 726757401 1.020000e-133 486.0
10 TraesCS2D01G495500 chr2A 79.857 561 62 26 783 1330 726560641 726561163 1.800000e-96 363.0
11 TraesCS2D01G495500 chr2A 83.990 406 32 15 928 1330 726592740 726593115 2.330000e-95 359.0
12 TraesCS2D01G495500 chr2A 81.193 218 22 10 1116 1331 726224130 726224330 9.100000e-35 158.0
13 TraesCS2D01G495500 chr2A 89.706 68 2 4 2392 2459 726757419 726757481 5.640000e-12 82.4
14 TraesCS2D01G495500 chrUn 81.279 219 22 9 1116 1332 317867824 317868025 2.530000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G495500 chr2D 592273139 592275597 2458 False 4542.0 4542 100.00000 1 2459 1 chr2D.!!$F5 2458
1 TraesCS2D01G495500 chr2D 592030958 592031539 581 False 364.0 364 79.44100 769 1330 1 chr2D.!!$F1 561
2 TraesCS2D01G495500 chr2B 717895066 717897355 2289 False 3035.0 3035 90.75000 1 2298 1 chr2B.!!$F2 2297
3 TraesCS2D01G495500 chr2B 717678458 717679001 543 False 377.0 377 80.07000 783 1330 1 chr2B.!!$F1 547
4 TraesCS2D01G495500 chr2A 726755002 726757481 2479 False 808.1 1711 90.24525 1 2459 4 chr2A.!!$F4 2458
5 TraesCS2D01G495500 chr2A 726560641 726561163 522 False 363.0 363 79.85700 783 1330 1 chr2A.!!$F2 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 941 0.320374 CTACGAACCCAAGTCCAGCA 59.68 55.0 0.0 0.0 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2386 2578 0.035317 TCCGATCCTACATGCCATGC 59.965 55.0 4.17 0.0 0.0 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 45 4.089065 GCAAATGACGAAATTGCAGAAGTC 59.911 41.667 12.52 0.00 46.57 3.01
49 51 5.163663 TGACGAAATTGCAGAAGTCTTGTTT 60.164 36.000 0.00 0.00 0.00 2.83
51 53 6.430451 ACGAAATTGCAGAAGTCTTGTTTAG 58.570 36.000 0.00 0.00 0.00 1.85
100 102 2.753452 TCTACAGAAGGCTTCTACGGTG 59.247 50.000 28.15 18.70 38.11 4.94
105 107 4.406003 ACAGAAGGCTTCTACGGTGATTAT 59.594 41.667 28.15 0.28 38.11 1.28
116 118 8.801882 TTCTACGGTGATTATTTCTTTTCCAT 57.198 30.769 0.00 0.00 0.00 3.41
124 126 5.713792 TTATTTCTTTTCCATGGCGTTGA 57.286 34.783 6.96 0.00 0.00 3.18
154 156 4.174762 GGACCTTAACACGATGACTTCTC 58.825 47.826 0.00 0.00 0.00 2.87
161 163 1.934956 CGATGACTTCTCGACCGCG 60.935 63.158 0.00 0.00 38.38 6.46
175 177 2.536365 GACCGCGAGATACAATGTCAA 58.464 47.619 8.23 0.00 0.00 3.18
178 180 2.481276 CCGCGAGATACAATGTCAAGGA 60.481 50.000 8.23 0.00 0.00 3.36
205 207 2.024176 TTAGCTTGCCTTTCGCTAGG 57.976 50.000 0.00 0.00 40.29 3.02
224 226 5.921408 GCTAGGTCGTCCTGTAGATTAAATG 59.079 44.000 11.77 0.00 44.81 2.32
228 230 5.519206 GGTCGTCCTGTAGATTAAATGTGTC 59.481 44.000 0.00 0.00 0.00 3.67
355 358 6.607970 TCTATTGATGAGGGATTGCAAAGAT 58.392 36.000 1.71 0.00 0.00 2.40
367 370 2.262572 GCAAAGATTACTTGGCGTGG 57.737 50.000 0.00 0.00 42.18 4.94
552 555 5.824904 ATTTGGAGCACTAAATACAGCAG 57.175 39.130 3.71 0.00 35.88 4.24
671 674 5.280945 AGAAAATGTCGTGACAAACAATGG 58.719 37.500 6.80 0.00 45.41 3.16
849 939 2.365408 GACTACGAACCCAAGTCCAG 57.635 55.000 0.00 0.00 34.79 3.86
850 940 0.320697 ACTACGAACCCAAGTCCAGC 59.679 55.000 0.00 0.00 0.00 4.85
851 941 0.320374 CTACGAACCCAAGTCCAGCA 59.680 55.000 0.00 0.00 0.00 4.41
852 942 0.981183 TACGAACCCAAGTCCAGCAT 59.019 50.000 0.00 0.00 0.00 3.79
979 1111 3.949980 AGGCAGCACAGCAGCTCA 61.950 61.111 6.35 0.00 44.54 4.26
1359 1501 3.423154 GCGCGGTTCTTCACCCTG 61.423 66.667 8.83 0.00 43.83 4.45
1693 1837 4.452733 CCTTGAGACGCCCGGGTC 62.453 72.222 24.63 13.27 37.19 4.46
1754 1898 5.646360 GCAGGAAAATTACTTAGTAGTGCCA 59.354 40.000 0.00 0.00 35.78 4.92
1760 1904 6.576778 AATTACTTAGTAGTGCCAGGGATT 57.423 37.500 0.00 0.00 35.78 3.01
1827 1977 7.254658 CCGAATAATTCACCGTTGTAAATAGCT 60.255 37.037 0.00 0.00 0.00 3.32
1828 1978 8.757789 CGAATAATTCACCGTTGTAAATAGCTA 58.242 33.333 0.00 0.00 0.00 3.32
1892 2043 9.827411 GAATTGAAGTGAAACATTTCTACTACC 57.173 33.333 5.97 4.95 41.43 3.18
1893 2044 9.574516 AATTGAAGTGAAACATTTCTACTACCT 57.425 29.630 5.97 0.00 41.43 3.08
1895 2046 9.485206 TTGAAGTGAAACATTTCTACTACCTAC 57.515 33.333 5.97 0.00 41.43 3.18
1896 2047 8.867097 TGAAGTGAAACATTTCTACTACCTACT 58.133 33.333 5.97 0.00 41.43 2.57
1905 2056 9.978336 ACATTTCTACTACCTACTCTAGTTCTT 57.022 33.333 0.00 0.00 0.00 2.52
1908 2059 9.804977 TTTCTACTACCTACTCTAGTTCTTTGT 57.195 33.333 0.00 0.00 0.00 2.83
1912 2063 8.564509 ACTACCTACTCTAGTTCTTTGTACTG 57.435 38.462 0.00 0.00 0.00 2.74
1970 2124 8.143835 TGAGATTTCAAATTTCTCTTGGTTTCC 58.856 33.333 2.57 0.00 37.40 3.13
2039 2193 1.362224 AGTGCAGATGGGTACTGGTT 58.638 50.000 0.00 0.00 36.09 3.67
2041 2195 1.812571 GTGCAGATGGGTACTGGTTTG 59.187 52.381 0.00 0.00 36.09 2.93
2051 2208 3.219281 GGTACTGGTTTGCCTTTCTGAA 58.781 45.455 0.00 0.00 35.27 3.02
2216 2402 2.329379 CCGCTACCAGCTCGAATTATC 58.671 52.381 0.00 0.00 39.60 1.75
2267 2459 6.148948 GCAACTGCAACAATCAACATAAGTA 58.851 36.000 0.00 0.00 41.59 2.24
2268 2460 6.306356 GCAACTGCAACAATCAACATAAGTAG 59.694 38.462 0.00 0.00 41.59 2.57
2269 2461 5.942872 ACTGCAACAATCAACATAAGTAGC 58.057 37.500 0.00 0.00 0.00 3.58
2311 2503 1.270839 ACCGCTATTGTGCAGTCAACT 60.271 47.619 0.00 0.00 0.00 3.16
2325 2517 7.497579 TGTGCAGTCAACTAAGTATTTTTCAGA 59.502 33.333 0.00 0.00 0.00 3.27
2326 2518 8.342634 GTGCAGTCAACTAAGTATTTTTCAGAA 58.657 33.333 0.00 0.00 0.00 3.02
2328 2520 9.899226 GCAGTCAACTAAGTATTTTTCAGAATT 57.101 29.630 0.00 0.00 0.00 2.17
2344 2536 2.305927 AGAATTTTTCTCTCCTGCCCGA 59.694 45.455 0.00 0.00 34.07 5.14
2345 2537 2.409948 ATTTTTCTCTCCTGCCCGAG 57.590 50.000 0.00 0.00 0.00 4.63
2346 2538 1.348064 TTTTTCTCTCCTGCCCGAGA 58.652 50.000 0.42 0.42 37.35 4.04
2347 2539 1.573108 TTTTCTCTCCTGCCCGAGAT 58.427 50.000 0.68 0.00 38.22 2.75
2348 2540 1.573108 TTTCTCTCCTGCCCGAGATT 58.427 50.000 0.68 0.00 38.22 2.40
2349 2541 2.454336 TTCTCTCCTGCCCGAGATTA 57.546 50.000 0.68 0.00 38.22 1.75
2350 2542 1.693627 TCTCTCCTGCCCGAGATTAC 58.306 55.000 0.68 0.00 38.22 1.89
2351 2543 0.312416 CTCTCCTGCCCGAGATTACG 59.688 60.000 0.68 0.00 38.22 3.18
2359 2551 3.509388 CCGAGATTACGGTATGGCC 57.491 57.895 0.00 0.00 46.70 5.36
2360 2552 0.677288 CCGAGATTACGGTATGGCCA 59.323 55.000 8.56 8.56 46.70 5.36
2361 2553 1.336887 CCGAGATTACGGTATGGCCAG 60.337 57.143 13.05 0.00 46.70 4.85
2362 2554 1.340248 CGAGATTACGGTATGGCCAGT 59.660 52.381 13.05 6.02 36.97 4.00
2363 2555 2.755650 GAGATTACGGTATGGCCAGTG 58.244 52.381 13.05 2.88 36.97 3.66
2364 2556 1.202651 AGATTACGGTATGGCCAGTGC 60.203 52.381 13.05 3.22 36.97 4.40
2365 2557 0.544223 ATTACGGTATGGCCAGTGCA 59.456 50.000 13.05 0.00 40.13 4.57
2366 2558 0.325272 TTACGGTATGGCCAGTGCAA 59.675 50.000 13.05 0.00 40.13 4.08
2367 2559 0.107897 TACGGTATGGCCAGTGCAAG 60.108 55.000 13.05 2.71 40.13 4.01
2368 2560 2.114670 CGGTATGGCCAGTGCAAGG 61.115 63.158 13.05 2.10 40.13 3.61
2376 2568 2.360852 CAGTGCAAGGCCTCAGGG 60.361 66.667 5.23 0.00 0.00 4.45
2381 2573 1.751927 GCAAGGCCTCAGGGTGATG 60.752 63.158 5.23 0.00 34.45 3.07
2386 2578 2.503061 CCTCAGGGTGATGCCTCG 59.497 66.667 0.00 0.00 37.43 4.63
2387 2579 2.202987 CTCAGGGTGATGCCTCGC 60.203 66.667 0.00 0.00 37.43 5.03
2388 2580 3.002583 TCAGGGTGATGCCTCGCA 61.003 61.111 4.90 0.00 44.86 5.10
2419 2611 1.118356 ATCGGATGTCAGGGCCTCTC 61.118 60.000 0.95 0.00 0.00 3.20
2420 2612 1.760086 CGGATGTCAGGGCCTCTCT 60.760 63.158 0.95 0.00 0.00 3.10
2421 2613 1.743321 CGGATGTCAGGGCCTCTCTC 61.743 65.000 0.95 0.00 0.00 3.20
2422 2614 0.398381 GGATGTCAGGGCCTCTCTCT 60.398 60.000 0.95 0.00 0.00 3.10
2423 2615 1.494960 GATGTCAGGGCCTCTCTCTT 58.505 55.000 0.95 0.00 0.00 2.85
2424 2616 1.836802 GATGTCAGGGCCTCTCTCTTT 59.163 52.381 0.95 0.00 0.00 2.52
2425 2617 1.270907 TGTCAGGGCCTCTCTCTTTC 58.729 55.000 0.95 0.00 0.00 2.62
2426 2618 1.203237 TGTCAGGGCCTCTCTCTTTCT 60.203 52.381 0.95 0.00 0.00 2.52
2427 2619 1.206849 GTCAGGGCCTCTCTCTTTCTG 59.793 57.143 0.95 0.00 0.00 3.02
2428 2620 0.540923 CAGGGCCTCTCTCTTTCTGG 59.459 60.000 0.95 0.00 0.00 3.86
2429 2621 0.620121 AGGGCCTCTCTCTTTCTGGG 60.620 60.000 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 45 7.308435 CAAAGCTAAACCATCTCCTAAACAAG 58.692 38.462 0.00 0.00 0.00 3.16
49 51 3.202151 CCCCAAAGCTAAACCATCTCCTA 59.798 47.826 0.00 0.00 0.00 2.94
51 53 2.291605 ACCCCAAAGCTAAACCATCTCC 60.292 50.000 0.00 0.00 0.00 3.71
100 102 6.329496 TCAACGCCATGGAAAAGAAATAATC 58.671 36.000 18.40 0.00 0.00 1.75
105 107 3.056891 GGATCAACGCCATGGAAAAGAAA 60.057 43.478 18.40 0.00 0.00 2.52
116 118 2.046023 CCAGCTGGATCAACGCCA 60.046 61.111 29.88 0.00 37.39 5.69
140 142 0.168348 CGGTCGAGAAGTCATCGTGT 59.832 55.000 0.00 0.00 40.95 4.49
154 156 1.121240 GACATTGTATCTCGCGGTCG 58.879 55.000 6.13 0.00 0.00 4.79
161 163 3.126831 CGCCTCCTTGACATTGTATCTC 58.873 50.000 0.00 0.00 0.00 2.75
175 177 1.002544 GGCAAGCTAATATCGCCTCCT 59.997 52.381 0.00 0.00 39.73 3.69
198 200 0.538584 TCTACAGGACGACCTAGCGA 59.461 55.000 6.01 0.26 45.94 4.93
205 207 6.253727 CAGACACATTTAATCTACAGGACGAC 59.746 42.308 0.00 0.00 0.00 4.34
212 214 7.387673 CAGTGAACCAGACACATTTAATCTACA 59.612 37.037 0.00 0.00 40.25 2.74
224 226 2.490991 GGTTACCAGTGAACCAGACAC 58.509 52.381 8.51 0.00 44.92 3.67
260 263 6.826668 ACTTCCAACGATATATGACATTCCA 58.173 36.000 0.00 0.00 0.00 3.53
299 302 7.433708 TGAATTTTTGCGAATAAGACTCTCA 57.566 32.000 0.00 0.00 0.00 3.27
355 358 2.037381 TGTGTATGTCCACGCCAAGTAA 59.963 45.455 0.00 0.00 38.20 2.24
367 370 6.970484 AGTTCAATGTTTCCTTGTGTATGTC 58.030 36.000 0.00 0.00 0.00 3.06
529 532 6.414732 ACTGCTGTATTTAGTGCTCCAAATA 58.585 36.000 0.00 0.00 0.00 1.40
552 555 8.200792 TGGAAACAATATTGCCCACAAATATAC 58.799 33.333 15.48 0.00 36.93 1.47
671 674 4.748102 TCACAAATGAAGGTCGTTAGTGAC 59.252 41.667 0.00 0.00 38.17 3.67
759 846 3.778075 TCATTCCTACATTTTCCGGGAGA 59.222 43.478 0.00 0.00 0.00 3.71
760 847 4.150897 TCATTCCTACATTTTCCGGGAG 57.849 45.455 0.00 0.00 0.00 4.30
761 848 4.018779 ACTTCATTCCTACATTTTCCGGGA 60.019 41.667 0.00 0.00 0.00 5.14
762 849 4.270008 ACTTCATTCCTACATTTTCCGGG 58.730 43.478 0.00 0.00 0.00 5.73
763 850 4.335594 GGACTTCATTCCTACATTTTCCGG 59.664 45.833 0.00 0.00 32.24 5.14
764 851 4.335594 GGGACTTCATTCCTACATTTTCCG 59.664 45.833 0.00 0.00 35.76 4.30
848 938 2.288643 GGGAGGGAGGGAGATGCT 59.711 66.667 0.00 0.00 0.00 3.79
849 939 1.841103 GAGGGAGGGAGGGAGATGC 60.841 68.421 0.00 0.00 0.00 3.91
850 940 1.152139 GGAGGGAGGGAGGGAGATG 60.152 68.421 0.00 0.00 0.00 2.90
851 941 2.416923 GGGAGGGAGGGAGGGAGAT 61.417 68.421 0.00 0.00 0.00 2.75
852 942 3.036959 GGGAGGGAGGGAGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
979 1111 2.900106 GCAGTTGAGGGACTGGGCT 61.900 63.158 7.10 0.00 45.59 5.19
1359 1501 1.522580 GCCGCTCTTGATGTCCTCC 60.523 63.158 0.00 0.00 0.00 4.30
1518 1661 2.431942 CACGACGGCCACTACCAC 60.432 66.667 2.24 0.00 0.00 4.16
1523 1666 4.228899 AAAAACACGACGGCCACT 57.771 50.000 2.24 0.00 0.00 4.00
1544 1687 7.625469 AGAGGGAAACAAAAATAAACAACCAA 58.375 30.769 0.00 0.00 0.00 3.67
1545 1688 7.189079 AGAGGGAAACAAAAATAAACAACCA 57.811 32.000 0.00 0.00 0.00 3.67
1546 1689 6.704493 GGAGAGGGAAACAAAAATAAACAACC 59.296 38.462 0.00 0.00 0.00 3.77
1547 1690 6.704493 GGGAGAGGGAAACAAAAATAAACAAC 59.296 38.462 0.00 0.00 0.00 3.32
1548 1691 6.613679 AGGGAGAGGGAAACAAAAATAAACAA 59.386 34.615 0.00 0.00 0.00 2.83
1550 1693 6.295123 GGAGGGAGAGGGAAACAAAAATAAAC 60.295 42.308 0.00 0.00 0.00 2.01
1554 1697 3.502303 GGGAGGGAGAGGGAAACAAAAAT 60.502 47.826 0.00 0.00 0.00 1.82
1691 1835 1.412710 TGAATGGATGGCTAGACCGAC 59.587 52.381 0.00 0.00 43.94 4.79
1692 1836 1.412710 GTGAATGGATGGCTAGACCGA 59.587 52.381 0.00 0.00 43.94 4.69
1693 1837 1.414181 AGTGAATGGATGGCTAGACCG 59.586 52.381 0.00 0.00 43.94 4.79
1892 2043 8.271312 ACTAGCAGTACAAAGAACTAGAGTAG 57.729 38.462 0.00 0.00 33.11 2.57
1893 2044 7.881751 TGACTAGCAGTACAAAGAACTAGAGTA 59.118 37.037 0.00 0.00 33.11 2.59
1894 2045 6.715718 TGACTAGCAGTACAAAGAACTAGAGT 59.284 38.462 0.00 0.00 33.11 3.24
1895 2046 7.147143 TGACTAGCAGTACAAAGAACTAGAG 57.853 40.000 0.00 0.00 33.11 2.43
1896 2047 7.147143 CTGACTAGCAGTACAAAGAACTAGA 57.853 40.000 0.00 0.00 39.85 2.43
1912 2063 3.269178 ACGGTGAGTAGTACTGACTAGC 58.731 50.000 17.79 2.86 38.88 3.42
1970 2124 1.863880 GTGCGTACGACTCTCTGCG 60.864 63.158 21.65 0.00 0.00 5.18
2039 2193 2.034939 CACATGCAGTTCAGAAAGGCAA 59.965 45.455 12.58 0.00 38.08 4.52
2041 2195 1.068055 CCACATGCAGTTCAGAAAGGC 60.068 52.381 0.00 1.19 0.00 4.35
2051 2208 0.322816 CTTGCCCTACCACATGCAGT 60.323 55.000 0.00 0.00 34.81 4.40
2216 2402 8.950210 AGGACGAATTATTGCCAATAATAGATG 58.050 33.333 20.04 13.28 41.86 2.90
2267 2459 2.565841 GATTCGGGAAATGCTACTGCT 58.434 47.619 0.00 0.00 40.48 4.24
2268 2460 1.261619 CGATTCGGGAAATGCTACTGC 59.738 52.381 0.00 0.00 40.20 4.40
2269 2461 1.261619 GCGATTCGGGAAATGCTACTG 59.738 52.381 8.34 0.00 0.00 2.74
2325 2517 2.305927 TCTCGGGCAGGAGAGAAAAATT 59.694 45.455 3.67 0.00 40.18 1.82
2326 2518 1.909302 TCTCGGGCAGGAGAGAAAAAT 59.091 47.619 3.67 0.00 40.18 1.82
2328 2520 1.573108 ATCTCGGGCAGGAGAGAAAA 58.427 50.000 12.17 0.00 45.59 2.29
2344 2536 1.202651 GCACTGGCCATACCGTAATCT 60.203 52.381 5.51 0.00 43.94 2.40
2345 2537 1.226746 GCACTGGCCATACCGTAATC 58.773 55.000 5.51 0.00 43.94 1.75
2346 2538 0.544223 TGCACTGGCCATACCGTAAT 59.456 50.000 5.51 0.00 43.94 1.89
2347 2539 0.325272 TTGCACTGGCCATACCGTAA 59.675 50.000 5.51 0.00 43.94 3.18
2348 2540 0.107897 CTTGCACTGGCCATACCGTA 60.108 55.000 5.51 0.00 43.94 4.02
2349 2541 1.377202 CTTGCACTGGCCATACCGT 60.377 57.895 5.51 0.00 43.94 4.83
2350 2542 2.114670 CCTTGCACTGGCCATACCG 61.115 63.158 5.51 0.00 43.94 4.02
2351 2543 2.418083 GCCTTGCACTGGCCATACC 61.418 63.158 5.51 0.00 44.32 2.73
2352 2544 3.200522 GCCTTGCACTGGCCATAC 58.799 61.111 5.51 0.00 44.32 2.39
2358 2550 2.360852 CCTGAGGCCTTGCACTGG 60.361 66.667 6.77 3.37 0.00 4.00
2359 2551 2.360852 CCCTGAGGCCTTGCACTG 60.361 66.667 6.77 0.00 0.00 3.66
2360 2552 2.856000 ACCCTGAGGCCTTGCACT 60.856 61.111 6.77 0.00 36.11 4.40
2361 2553 2.490270 ATCACCCTGAGGCCTTGCAC 62.490 60.000 6.77 0.00 36.11 4.57
2362 2554 2.233566 ATCACCCTGAGGCCTTGCA 61.234 57.895 6.77 0.00 36.11 4.08
2363 2555 1.751927 CATCACCCTGAGGCCTTGC 60.752 63.158 6.77 0.00 36.11 4.01
2364 2556 4.651867 CATCACCCTGAGGCCTTG 57.348 61.111 6.77 0.00 36.11 3.61
2384 2576 0.319813 CGATCCTACATGCCATGCGA 60.320 55.000 4.17 0.00 0.00 5.10
2386 2578 0.035317 TCCGATCCTACATGCCATGC 59.965 55.000 4.17 0.00 0.00 4.06
2387 2579 2.289882 ACATCCGATCCTACATGCCATG 60.290 50.000 2.40 2.40 0.00 3.66
2388 2580 1.980765 ACATCCGATCCTACATGCCAT 59.019 47.619 0.00 0.00 0.00 4.40
2389 2581 1.344438 GACATCCGATCCTACATGCCA 59.656 52.381 0.00 0.00 0.00 4.92
2390 2582 1.344438 TGACATCCGATCCTACATGCC 59.656 52.381 0.00 0.00 0.00 4.40
2398 2590 2.105806 GAGGCCCTGACATCCGATCC 62.106 65.000 0.00 0.00 0.00 3.36
2419 2611 1.137872 CGGTGATCTCCCCAGAAAGAG 59.862 57.143 8.22 0.00 30.24 2.85
2420 2612 1.195115 CGGTGATCTCCCCAGAAAGA 58.805 55.000 8.22 0.00 30.24 2.52
2421 2613 0.905357 ACGGTGATCTCCCCAGAAAG 59.095 55.000 8.22 0.00 30.24 2.62
2422 2614 0.902531 GACGGTGATCTCCCCAGAAA 59.097 55.000 8.22 0.00 30.24 2.52
2423 2615 0.252057 TGACGGTGATCTCCCCAGAA 60.252 55.000 8.22 0.00 30.24 3.02
2424 2616 0.970937 GTGACGGTGATCTCCCCAGA 60.971 60.000 8.22 0.00 0.00 3.86
2425 2617 1.517832 GTGACGGTGATCTCCCCAG 59.482 63.158 8.22 0.00 0.00 4.45
2426 2618 2.348104 CGTGACGGTGATCTCCCCA 61.348 63.158 8.22 4.16 0.00 4.96
2427 2619 2.494918 CGTGACGGTGATCTCCCC 59.505 66.667 8.22 1.65 0.00 4.81
2428 2620 2.202756 GCGTGACGGTGATCTCCC 60.203 66.667 7.25 0.25 0.00 4.30
2429 2621 1.226717 GAGCGTGACGGTGATCTCC 60.227 63.158 16.53 3.58 37.83 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.