Multiple sequence alignment - TraesCS2D01G494600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G494600 chr2D 100.000 3026 0 0 1 3026 591602045 591605070 0.000000e+00 5589.0
1 TraesCS2D01G494600 chr2D 97.309 892 23 1 1 891 487267360 487266469 0.000000e+00 1513.0
2 TraesCS2D01G494600 chr2D 96.597 911 29 2 1 910 407655800 407654891 0.000000e+00 1509.0
3 TraesCS2D01G494600 chr2D 97.098 896 22 3 1 892 73098030 73098925 0.000000e+00 1507.0
4 TraesCS2D01G494600 chr2D 97.197 892 23 2 4 894 522330611 522329721 0.000000e+00 1507.0
5 TraesCS2D01G494600 chr2D 96.973 892 26 1 1 891 543282345 543283236 0.000000e+00 1496.0
6 TraesCS2D01G494600 chr2D 95.469 640 20 8 2381 3015 561334573 561335208 0.000000e+00 1013.0
7 TraesCS2D01G494600 chr2D 96.000 625 18 3 2389 3012 591611255 591611873 0.000000e+00 1009.0
8 TraesCS2D01G494600 chr2D 91.864 590 26 6 892 1459 591704013 591704602 0.000000e+00 804.0
9 TraesCS2D01G494600 chr2D 92.258 465 21 5 1018 1467 591575234 591575698 0.000000e+00 645.0
10 TraesCS2D01G494600 chr2D 83.382 343 33 13 1136 1475 592115619 592115940 2.280000e-76 296.0
11 TraesCS2D01G494600 chr2D 82.698 341 43 7 2058 2386 11506546 11506210 3.820000e-74 289.0
12 TraesCS2D01G494600 chr2D 82.544 338 43 7 2058 2383 391803018 391803351 1.780000e-72 283.0
13 TraesCS2D01G494600 chr2D 88.387 155 14 2 1871 2022 591576378 591576531 1.850000e-42 183.0
14 TraesCS2D01G494600 chr2D 86.822 129 15 2 1907 2035 591301519 591301645 3.140000e-30 143.0
15 TraesCS2D01G494600 chr2D 86.429 140 8 5 1907 2036 591438476 591438614 3.140000e-30 143.0
16 TraesCS2D01G494600 chr2D 87.963 108 9 3 1907 2011 591389333 591389439 1.140000e-24 124.0
17 TraesCS2D01G494600 chr2D 91.781 73 6 0 1550 1622 591575699 591575771 5.340000e-18 102.0
18 TraesCS2D01G494600 chr2D 87.324 71 2 1 1973 2036 591553378 591553448 1.160000e-09 75.0
19 TraesCS2D01G494600 chr2D 84.127 63 9 1 1907 1969 591548869 591548930 3.260000e-05 60.2
20 TraesCS2D01G494600 chr2D 100.000 31 0 0 2006 2036 591389448 591389478 1.170000e-04 58.4
21 TraesCS2D01G494600 chr3D 97.422 892 22 1 1 891 288045898 288046789 0.000000e+00 1519.0
22 TraesCS2D01G494600 chr3D 82.647 340 42 9 2059 2386 20906881 20906547 4.940000e-73 285.0
23 TraesCS2D01G494600 chr3D 82.569 327 44 6 2058 2372 300674016 300674341 2.970000e-70 276.0
24 TraesCS2D01G494600 chr1D 97.309 892 23 1 1 891 9660560 9661451 0.000000e+00 1513.0
25 TraesCS2D01G494600 chr1D 87.464 343 29 6 2058 2388 245970505 245970845 1.700000e-102 383.0
26 TraesCS2D01G494600 chr1D 82.698 341 43 7 2058 2386 418302710 418302374 3.820000e-74 289.0
27 TraesCS2D01G494600 chr6D 97.197 892 24 1 1 891 11162529 11163420 0.000000e+00 1507.0
28 TraesCS2D01G494600 chr6D 97.197 892 24 1 1 891 340563536 340562645 0.000000e+00 1507.0
29 TraesCS2D01G494600 chr6D 96.190 630 13 6 2389 3014 394599938 394599316 0.000000e+00 1020.0
30 TraesCS2D01G494600 chr5D 95.912 636 15 7 2389 3020 499631644 499631016 0.000000e+00 1020.0
31 TraesCS2D01G494600 chr5D 95.570 632 21 5 2387 3015 373957810 373958437 0.000000e+00 1005.0
32 TraesCS2D01G494600 chr5D 95.164 641 19 8 2388 3023 538073071 538073704 0.000000e+00 1002.0
33 TraesCS2D01G494600 chr5D 94.984 638 22 6 2389 3023 412133058 412133688 0.000000e+00 992.0
34 TraesCS2D01G494600 chr4D 95.283 636 17 8 2381 3012 41771668 41771042 0.000000e+00 996.0
35 TraesCS2D01G494600 chr4D 81.579 342 47 8 2059 2388 434465512 434465175 4.970000e-68 268.0
36 TraesCS2D01G494600 chr7D 95.126 636 21 6 2381 3014 90514048 90513421 0.000000e+00 994.0
37 TraesCS2D01G494600 chr7D 87.464 343 31 6 2058 2388 12913100 12913442 4.730000e-103 385.0
38 TraesCS2D01G494600 chr2B 90.148 609 38 4 890 1477 717327845 717328452 0.000000e+00 773.0
39 TraesCS2D01G494600 chr2B 90.317 599 27 14 892 1459 717345081 717345679 0.000000e+00 756.0
40 TraesCS2D01G494600 chr2B 85.965 741 55 19 1012 1728 717237286 717238001 0.000000e+00 747.0
41 TraesCS2D01G494600 chr2B 84.969 652 39 25 884 1477 717131398 717132048 9.280000e-170 606.0
42 TraesCS2D01G494600 chr2B 82.544 338 43 7 2058 2383 199463488 199463821 1.780000e-72 283.0
43 TraesCS2D01G494600 chr2B 85.657 251 24 8 1791 2035 717328838 717329082 1.390000e-63 254.0
44 TraesCS2D01G494600 chr2B 79.614 363 54 11 2040 2388 622715684 622716040 3.010000e-60 243.0
45 TraesCS2D01G494600 chr2B 93.243 74 4 1 1726 1798 717132384 717132457 1.150000e-19 108.0
46 TraesCS2D01G494600 chr2B 95.161 62 3 0 1795 1856 717132485 717132546 6.900000e-17 99.0
47 TraesCS2D01G494600 chr2A 90.541 592 32 5 892 1459 726387116 726387707 0.000000e+00 761.0
48 TraesCS2D01G494600 chr2A 91.164 464 26 3 1012 1460 726322225 726322688 1.540000e-172 616.0
49 TraesCS2D01G494600 chr2A 79.070 344 53 11 2059 2387 675587786 675587447 5.080000e-53 219.0
50 TraesCS2D01G494600 chr2A 86.260 131 13 2 1906 2032 726224635 726224764 1.460000e-28 137.0
51 TraesCS2D01G494600 chr2A 84.783 138 9 5 1910 2036 726296549 726296685 8.810000e-26 128.0
52 TraesCS2D01G494600 chr2A 89.899 99 9 1 1550 1648 726322703 726322800 3.170000e-25 126.0
53 TraesCS2D01G494600 chr2A 94.737 38 1 1 1717 1754 726322955 726322991 1.170000e-04 58.4
54 TraesCS2D01G494600 chr3A 88.583 254 14 6 2058 2299 661642740 661642490 8.200000e-76 294.0
55 TraesCS2D01G494600 chr1B 82.891 339 42 7 2060 2386 657325133 657325467 1.060000e-74 291.0
56 TraesCS2D01G494600 chr1B 82.857 175 18 6 2058 2220 269314822 269314996 2.430000e-31 147.0
57 TraesCS2D01G494600 chr4B 83.333 330 36 7 2058 2372 620195251 620195576 1.370000e-73 287.0
58 TraesCS2D01G494600 chr7A 81.525 341 47 7 2058 2386 700096344 700096008 1.790000e-67 267.0
59 TraesCS2D01G494600 chr7A 81.651 327 47 7 2058 2372 215930448 215930773 2.990000e-65 259.0
60 TraesCS2D01G494600 chr5A 77.941 340 45 15 2058 2371 59027508 59027173 5.150000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G494600 chr2D 591602045 591605070 3025 False 5589.0 5589 100.000000 1 3026 1 chr2D.!!$F9 3025
1 TraesCS2D01G494600 chr2D 487266469 487267360 891 True 1513.0 1513 97.309000 1 891 1 chr2D.!!$R3 890
2 TraesCS2D01G494600 chr2D 407654891 407655800 909 True 1509.0 1509 96.597000 1 910 1 chr2D.!!$R2 909
3 TraesCS2D01G494600 chr2D 73098030 73098925 895 False 1507.0 1507 97.098000 1 892 1 chr2D.!!$F1 891
4 TraesCS2D01G494600 chr2D 522329721 522330611 890 True 1507.0 1507 97.197000 4 894 1 chr2D.!!$R4 890
5 TraesCS2D01G494600 chr2D 543282345 543283236 891 False 1496.0 1496 96.973000 1 891 1 chr2D.!!$F3 890
6 TraesCS2D01G494600 chr2D 561334573 561335208 635 False 1013.0 1013 95.469000 2381 3015 1 chr2D.!!$F4 634
7 TraesCS2D01G494600 chr2D 591611255 591611873 618 False 1009.0 1009 96.000000 2389 3012 1 chr2D.!!$F10 623
8 TraesCS2D01G494600 chr2D 591704013 591704602 589 False 804.0 804 91.864000 892 1459 1 chr2D.!!$F11 567
9 TraesCS2D01G494600 chr2D 591575234 591576531 1297 False 310.0 645 90.808667 1018 2022 3 chr2D.!!$F14 1004
10 TraesCS2D01G494600 chr3D 288045898 288046789 891 False 1519.0 1519 97.422000 1 891 1 chr3D.!!$F1 890
11 TraesCS2D01G494600 chr1D 9660560 9661451 891 False 1513.0 1513 97.309000 1 891 1 chr1D.!!$F1 890
12 TraesCS2D01G494600 chr6D 11162529 11163420 891 False 1507.0 1507 97.197000 1 891 1 chr6D.!!$F1 890
13 TraesCS2D01G494600 chr6D 340562645 340563536 891 True 1507.0 1507 97.197000 1 891 1 chr6D.!!$R1 890
14 TraesCS2D01G494600 chr6D 394599316 394599938 622 True 1020.0 1020 96.190000 2389 3014 1 chr6D.!!$R2 625
15 TraesCS2D01G494600 chr5D 499631016 499631644 628 True 1020.0 1020 95.912000 2389 3020 1 chr5D.!!$R1 631
16 TraesCS2D01G494600 chr5D 373957810 373958437 627 False 1005.0 1005 95.570000 2387 3015 1 chr5D.!!$F1 628
17 TraesCS2D01G494600 chr5D 538073071 538073704 633 False 1002.0 1002 95.164000 2388 3023 1 chr5D.!!$F3 635
18 TraesCS2D01G494600 chr5D 412133058 412133688 630 False 992.0 992 94.984000 2389 3023 1 chr5D.!!$F2 634
19 TraesCS2D01G494600 chr4D 41771042 41771668 626 True 996.0 996 95.283000 2381 3012 1 chr4D.!!$R1 631
20 TraesCS2D01G494600 chr7D 90513421 90514048 627 True 994.0 994 95.126000 2381 3014 1 chr7D.!!$R1 633
21 TraesCS2D01G494600 chr2B 717345081 717345679 598 False 756.0 756 90.317000 892 1459 1 chr2B.!!$F4 567
22 TraesCS2D01G494600 chr2B 717237286 717238001 715 False 747.0 747 85.965000 1012 1728 1 chr2B.!!$F3 716
23 TraesCS2D01G494600 chr2B 717327845 717329082 1237 False 513.5 773 87.902500 890 2035 2 chr2B.!!$F6 1145
24 TraesCS2D01G494600 chr2B 717131398 717132546 1148 False 271.0 606 91.124333 884 1856 3 chr2B.!!$F5 972
25 TraesCS2D01G494600 chr2A 726387116 726387707 591 False 761.0 761 90.541000 892 1459 1 chr2A.!!$F3 567
26 TraesCS2D01G494600 chr2A 726322225 726322991 766 False 266.8 616 91.933333 1012 1754 3 chr2A.!!$F4 742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 925 0.460284 ATAAACGTGCAGCCGAGGAG 60.460 55.0 9.87 0.0 0.0 3.69 F
1617 1762 0.179225 GCGTACACAACAAGCGATGG 60.179 55.0 0.00 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 2154 0.094730 GCCATTCGTGTTACTCGCAC 59.905 55.000 1.70 0.0 0.00 5.34 R
2441 3055 1.672363 CGTTGCTATGCATCACCATGT 59.328 47.619 0.19 0.0 38.76 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 1.906824 GAGGGGGCCGTATCATCGA 60.907 63.158 0.00 0.00 0.00 3.59
505 506 2.290641 CCAATGGTAGTAGTTGTGGGCA 60.291 50.000 0.00 0.00 0.00 5.36
507 508 1.724545 TGGTAGTAGTTGTGGGCAGT 58.275 50.000 0.00 0.00 0.00 4.40
733 735 1.420514 GGAGCCATACCCTAAACCCTC 59.579 57.143 0.00 0.00 0.00 4.30
778 780 6.476380 TGAAAGCTGAATAAAACTGTTGCTTG 59.524 34.615 11.24 0.00 39.11 4.01
784 788 7.594758 GCTGAATAAAACTGTTGCTTGTTGATA 59.405 33.333 0.00 0.00 0.00 2.15
790 794 8.715191 AAAACTGTTGCTTGTTGATAATTTGA 57.285 26.923 0.00 0.00 0.00 2.69
803 807 6.141560 TGATAATTTGATGCGGCATACAAA 57.858 33.333 26.93 26.93 36.82 2.83
813 817 8.384607 TGATGCGGCATACAAAAGTATATAAA 57.615 30.769 16.66 0.00 0.00 1.40
839 844 5.733676 GGTACAAACCGATTTAAGGTAGGA 58.266 41.667 0.00 0.00 41.95 2.94
860 865 5.104485 AGGAGTACAAAACTGACTTGGACTT 60.104 40.000 11.01 0.00 45.95 3.01
919 925 0.460284 ATAAACGTGCAGCCGAGGAG 60.460 55.000 9.87 0.00 0.00 3.69
925 931 1.153369 TGCAGCCGAGGAGTAATGC 60.153 57.895 0.00 0.00 0.00 3.56
1024 1078 1.944035 CATTCCCACGCCATCATCG 59.056 57.895 0.00 0.00 0.00 3.84
1437 1533 3.982111 TTGCTGCAGGGGATGGCA 61.982 61.111 17.12 2.67 38.52 4.92
1479 1575 2.202743 CTCGATCGAGGCCGCAAA 60.203 61.111 32.81 2.15 38.51 3.68
1488 1622 2.361230 GGCCGCAAAACTAGCCCT 60.361 61.111 0.00 0.00 39.60 5.19
1489 1623 2.700773 GGCCGCAAAACTAGCCCTG 61.701 63.158 0.00 0.00 39.60 4.45
1490 1624 2.700773 GCCGCAAAACTAGCCCTGG 61.701 63.158 0.00 0.00 0.00 4.45
1491 1625 2.700773 CCGCAAAACTAGCCCTGGC 61.701 63.158 0.00 0.00 42.33 4.85
1580 1725 4.845580 CCTGCCGCTGCCGAGAAT 62.846 66.667 0.00 0.00 36.33 2.40
1617 1762 0.179225 GCGTACACAACAAGCGATGG 60.179 55.000 0.00 0.00 0.00 3.51
1639 1784 3.065787 ATCTGTGCTCCCATGCCCC 62.066 63.158 0.00 0.00 0.00 5.80
1649 1794 4.169696 CATGCCCCGGCGTAAGGA 62.170 66.667 6.01 0.00 45.51 3.36
1650 1795 3.404438 ATGCCCCGGCGTAAGGAA 61.404 61.111 6.01 0.00 45.51 3.36
1651 1796 3.400599 ATGCCCCGGCGTAAGGAAG 62.401 63.158 6.01 0.00 45.51 3.46
1652 1797 4.851179 GCCCCGGCGTAAGGAAGG 62.851 72.222 6.01 0.00 38.28 3.46
1654 1799 4.171103 CCCGGCGTAAGGAAGGGG 62.171 72.222 6.01 0.00 38.44 4.79
1655 1800 3.396570 CCGGCGTAAGGAAGGGGT 61.397 66.667 6.01 0.00 38.28 4.95
1657 1802 1.449070 CGGCGTAAGGAAGGGGTTC 60.449 63.158 0.00 0.00 38.28 3.62
1658 1803 1.449070 GGCGTAAGGAAGGGGTTCG 60.449 63.158 0.00 0.00 38.28 3.95
1659 1804 1.449070 GCGTAAGGAAGGGGTTCGG 60.449 63.158 0.00 0.00 38.28 4.30
1660 1805 1.449070 CGTAAGGAAGGGGTTCGGC 60.449 63.158 0.00 0.00 0.00 5.54
1678 1823 4.015382 GCCGCCGCGTACACAAAA 62.015 61.111 12.58 0.00 0.00 2.44
1679 1824 2.632541 CCGCCGCGTACACAAAAA 59.367 55.556 12.58 0.00 0.00 1.94
1689 1837 2.456010 GTACACAAAAAGCAACCGTGG 58.544 47.619 0.00 0.00 31.83 4.94
1787 2050 2.825836 GGAAGATGTGGCCGCCAG 60.826 66.667 13.92 0.00 32.34 4.85
1788 2051 2.825836 GAAGATGTGGCCGCCAGG 60.826 66.667 13.92 0.00 41.62 4.45
1804 2100 3.444850 AGGGACTGCATGTGCTTTT 57.555 47.368 6.55 0.00 42.66 2.27
1856 2154 1.240256 TTTGAACAAACGATCCCGGG 58.760 50.000 16.85 16.85 40.78 5.73
1866 2174 1.227176 GATCCCGGGTGCGAGTAAC 60.227 63.158 22.86 0.00 0.00 2.50
1867 2175 1.952102 GATCCCGGGTGCGAGTAACA 61.952 60.000 22.86 0.00 0.00 2.41
1868 2176 2.234913 ATCCCGGGTGCGAGTAACAC 62.235 60.000 22.86 0.00 37.31 3.32
1869 2177 2.807895 CCGGGTGCGAGTAACACG 60.808 66.667 0.00 0.00 44.03 4.49
1921 2533 8.858003 TTCATCACTCTACTAATTGATCGAAC 57.142 34.615 0.00 0.00 0.00 3.95
1922 2534 7.996385 TCATCACTCTACTAATTGATCGAACA 58.004 34.615 0.00 0.00 0.00 3.18
1925 2537 9.653287 ATCACTCTACTAATTGATCGAACAAAA 57.347 29.630 12.37 3.26 33.44 2.44
1962 2574 5.938125 TGGGATTGTTTTCTCTGTAACTAGC 59.062 40.000 0.00 0.00 0.00 3.42
1963 2575 5.354513 GGGATTGTTTTCTCTGTAACTAGCC 59.645 44.000 0.00 0.00 35.69 3.93
1969 2581 5.814764 TTTCTCTGTAACTAGCCTACTCG 57.185 43.478 0.00 0.00 0.00 4.18
2036 2648 9.903682 AAGATTGATTGATTGTTCTTGTTGTAG 57.096 29.630 0.00 0.00 0.00 2.74
2037 2649 9.071276 AGATTGATTGATTGTTCTTGTTGTAGT 57.929 29.630 0.00 0.00 0.00 2.73
2070 2682 9.715123 TTTTAGAATACGTGTATCATTGCATTG 57.285 29.630 0.00 2.08 0.00 2.82
2071 2683 8.655651 TTAGAATACGTGTATCATTGCATTGA 57.344 30.769 13.30 13.30 0.00 2.57
2072 2684 7.734924 AGAATACGTGTATCATTGCATTGAT 57.265 32.000 23.42 23.42 39.60 2.57
2073 2685 8.831715 AGAATACGTGTATCATTGCATTGATA 57.168 30.769 21.66 21.66 37.51 2.15
2074 2686 8.929746 AGAATACGTGTATCATTGCATTGATAG 58.070 33.333 24.60 17.69 38.83 2.08
2075 2687 8.831715 AATACGTGTATCATTGCATTGATAGA 57.168 30.769 24.60 21.80 38.83 1.98
2076 2688 8.831715 ATACGTGTATCATTGCATTGATAGAA 57.168 30.769 24.60 16.24 38.83 2.10
2077 2689 7.182361 ACGTGTATCATTGCATTGATAGAAG 57.818 36.000 25.62 25.62 38.83 2.85
2078 2690 6.986231 ACGTGTATCATTGCATTGATAGAAGA 59.014 34.615 30.02 14.17 38.83 2.87
2079 2691 7.495606 ACGTGTATCATTGCATTGATAGAAGAA 59.504 33.333 30.02 13.65 38.83 2.52
2080 2692 8.008279 CGTGTATCATTGCATTGATAGAAGAAG 58.992 37.037 24.60 14.71 38.83 2.85
2081 2693 8.834465 GTGTATCATTGCATTGATAGAAGAAGT 58.166 33.333 24.60 6.26 38.83 3.01
2082 2694 9.399797 TGTATCATTGCATTGATAGAAGAAGTT 57.600 29.630 24.60 5.66 38.83 2.66
2085 2697 9.842775 ATCATTGCATTGATAGAAGAAGTTAGA 57.157 29.630 19.81 0.00 34.59 2.10
2086 2698 9.671279 TCATTGCATTGATAGAAGAAGTTAGAA 57.329 29.630 7.19 0.00 0.00 2.10
2089 2701 9.671279 TTGCATTGATAGAAGAAGTTAGAATGA 57.329 29.630 0.00 0.00 0.00 2.57
2090 2702 9.322773 TGCATTGATAGAAGAAGTTAGAATGAG 57.677 33.333 0.00 0.00 0.00 2.90
2091 2703 9.323985 GCATTGATAGAAGAAGTTAGAATGAGT 57.676 33.333 0.00 0.00 0.00 3.41
2099 2711 8.091449 AGAAGAAGTTAGAATGAGTACAACAGG 58.909 37.037 0.00 0.00 0.00 4.00
2100 2712 7.304497 AGAAGTTAGAATGAGTACAACAGGT 57.696 36.000 0.00 0.00 0.00 4.00
2101 2713 7.155328 AGAAGTTAGAATGAGTACAACAGGTG 58.845 38.462 0.00 0.00 0.00 4.00
2102 2714 5.794894 AGTTAGAATGAGTACAACAGGTGG 58.205 41.667 0.00 0.00 0.00 4.61
2103 2715 5.307196 AGTTAGAATGAGTACAACAGGTGGT 59.693 40.000 0.00 0.00 0.00 4.16
2104 2716 6.495872 AGTTAGAATGAGTACAACAGGTGGTA 59.504 38.462 0.00 0.00 0.00 3.25
2105 2717 5.148651 AGAATGAGTACAACAGGTGGTAC 57.851 43.478 8.73 8.73 40.06 3.34
2106 2718 4.591498 AGAATGAGTACAACAGGTGGTACA 59.409 41.667 17.06 0.82 41.74 2.90
2107 2719 4.967084 ATGAGTACAACAGGTGGTACAA 57.033 40.909 17.06 7.25 44.16 2.41
2118 2730 2.941891 GTGGTACAACACATGACACG 57.058 50.000 0.00 0.00 44.16 4.49
2119 2731 1.529438 GTGGTACAACACATGACACGG 59.471 52.381 0.00 0.00 44.16 4.94
2120 2732 1.413077 TGGTACAACACATGACACGGA 59.587 47.619 0.00 0.00 31.92 4.69
2121 2733 2.037902 TGGTACAACACATGACACGGAT 59.962 45.455 0.00 0.00 31.92 4.18
2122 2734 2.415168 GGTACAACACATGACACGGATG 59.585 50.000 0.00 0.00 0.00 3.51
2123 2735 0.874390 ACAACACATGACACGGATGC 59.126 50.000 0.00 0.00 0.00 3.91
2124 2736 0.179217 CAACACATGACACGGATGCG 60.179 55.000 4.58 4.58 0.00 4.73
2125 2737 0.320334 AACACATGACACGGATGCGA 60.320 50.000 15.49 0.00 0.00 5.10
2126 2738 0.737367 ACACATGACACGGATGCGAG 60.737 55.000 15.49 8.35 0.00 5.03
2127 2739 1.153568 ACATGACACGGATGCGAGG 60.154 57.895 15.49 7.60 0.00 4.63
2128 2740 1.884464 CATGACACGGATGCGAGGG 60.884 63.158 15.49 4.83 0.00 4.30
2129 2741 3.094062 ATGACACGGATGCGAGGGG 62.094 63.158 15.49 2.12 0.00 4.79
2139 2751 3.499737 GCGAGGGGCGTGAACATG 61.500 66.667 0.00 0.00 43.41 3.21
2140 2752 2.819595 CGAGGGGCGTGAACATGG 60.820 66.667 0.00 0.00 34.64 3.66
2141 2753 2.668632 GAGGGGCGTGAACATGGA 59.331 61.111 0.00 0.00 0.00 3.41
2142 2754 1.450312 GAGGGGCGTGAACATGGAG 60.450 63.158 0.00 0.00 0.00 3.86
2143 2755 1.899437 GAGGGGCGTGAACATGGAGA 61.899 60.000 0.00 0.00 0.00 3.71
2144 2756 1.450312 GGGGCGTGAACATGGAGAG 60.450 63.158 0.00 0.00 0.00 3.20
2145 2757 1.450312 GGGCGTGAACATGGAGAGG 60.450 63.158 0.00 0.00 0.00 3.69
2146 2758 2.109126 GGCGTGAACATGGAGAGGC 61.109 63.158 0.00 0.00 0.00 4.70
2147 2759 1.375908 GCGTGAACATGGAGAGGCA 60.376 57.895 0.00 0.00 0.00 4.75
2148 2760 0.745845 GCGTGAACATGGAGAGGCAT 60.746 55.000 0.00 0.00 0.00 4.40
2149 2761 1.473257 GCGTGAACATGGAGAGGCATA 60.473 52.381 0.00 0.00 0.00 3.14
2150 2762 2.905075 CGTGAACATGGAGAGGCATAA 58.095 47.619 0.00 0.00 0.00 1.90
2151 2763 3.270027 CGTGAACATGGAGAGGCATAAA 58.730 45.455 0.00 0.00 0.00 1.40
2152 2764 3.689161 CGTGAACATGGAGAGGCATAAAA 59.311 43.478 0.00 0.00 0.00 1.52
2153 2765 4.336433 CGTGAACATGGAGAGGCATAAAAT 59.664 41.667 0.00 0.00 0.00 1.82
2154 2766 5.585390 GTGAACATGGAGAGGCATAAAATG 58.415 41.667 0.00 0.00 0.00 2.32
2167 2779 4.898829 CATAAAATGCTCGACCCAATCA 57.101 40.909 0.00 0.00 0.00 2.57
2168 2780 5.247507 CATAAAATGCTCGACCCAATCAA 57.752 39.130 0.00 0.00 0.00 2.57
2169 2781 5.649557 CATAAAATGCTCGACCCAATCAAA 58.350 37.500 0.00 0.00 0.00 2.69
2170 2782 3.855689 AAATGCTCGACCCAATCAAAG 57.144 42.857 0.00 0.00 0.00 2.77
2171 2783 2.787473 ATGCTCGACCCAATCAAAGA 57.213 45.000 0.00 0.00 0.00 2.52
2172 2784 2.559698 TGCTCGACCCAATCAAAGAA 57.440 45.000 0.00 0.00 0.00 2.52
2173 2785 2.426522 TGCTCGACCCAATCAAAGAAG 58.573 47.619 0.00 0.00 0.00 2.85
2174 2786 2.038426 TGCTCGACCCAATCAAAGAAGA 59.962 45.455 0.00 0.00 0.00 2.87
2175 2787 3.074412 GCTCGACCCAATCAAAGAAGAA 58.926 45.455 0.00 0.00 0.00 2.52
2176 2788 3.120165 GCTCGACCCAATCAAAGAAGAAC 60.120 47.826 0.00 0.00 0.00 3.01
2177 2789 4.065088 CTCGACCCAATCAAAGAAGAACA 58.935 43.478 0.00 0.00 0.00 3.18
2178 2790 3.813166 TCGACCCAATCAAAGAAGAACAC 59.187 43.478 0.00 0.00 0.00 3.32
2179 2791 3.563808 CGACCCAATCAAAGAAGAACACA 59.436 43.478 0.00 0.00 0.00 3.72
2180 2792 4.036262 CGACCCAATCAAAGAAGAACACAA 59.964 41.667 0.00 0.00 0.00 3.33
2181 2793 5.262588 ACCCAATCAAAGAAGAACACAAC 57.737 39.130 0.00 0.00 0.00 3.32
2182 2794 4.956075 ACCCAATCAAAGAAGAACACAACT 59.044 37.500 0.00 0.00 0.00 3.16
2183 2795 6.126409 ACCCAATCAAAGAAGAACACAACTA 58.874 36.000 0.00 0.00 0.00 2.24
2184 2796 6.605594 ACCCAATCAAAGAAGAACACAACTAA 59.394 34.615 0.00 0.00 0.00 2.24
2185 2797 7.123547 ACCCAATCAAAGAAGAACACAACTAAA 59.876 33.333 0.00 0.00 0.00 1.85
2186 2798 7.435192 CCCAATCAAAGAAGAACACAACTAAAC 59.565 37.037 0.00 0.00 0.00 2.01
2187 2799 8.190784 CCAATCAAAGAAGAACACAACTAAACT 58.809 33.333 0.00 0.00 0.00 2.66
2188 2800 9.226345 CAATCAAAGAAGAACACAACTAAACTC 57.774 33.333 0.00 0.00 0.00 3.01
2189 2801 7.915293 TCAAAGAAGAACACAACTAAACTCA 57.085 32.000 0.00 0.00 0.00 3.41
2190 2802 7.748847 TCAAAGAAGAACACAACTAAACTCAC 58.251 34.615 0.00 0.00 0.00 3.51
2191 2803 6.679327 AAGAAGAACACAACTAAACTCACC 57.321 37.500 0.00 0.00 0.00 4.02
2192 2804 4.809426 AGAAGAACACAACTAAACTCACCG 59.191 41.667 0.00 0.00 0.00 4.94
2193 2805 4.395959 AGAACACAACTAAACTCACCGA 57.604 40.909 0.00 0.00 0.00 4.69
2194 2806 4.117685 AGAACACAACTAAACTCACCGAC 58.882 43.478 0.00 0.00 0.00 4.79
2195 2807 2.830104 ACACAACTAAACTCACCGACC 58.170 47.619 0.00 0.00 0.00 4.79
2196 2808 2.168936 ACACAACTAAACTCACCGACCA 59.831 45.455 0.00 0.00 0.00 4.02
2197 2809 2.800544 CACAACTAAACTCACCGACCAG 59.199 50.000 0.00 0.00 0.00 4.00
2198 2810 2.696707 ACAACTAAACTCACCGACCAGA 59.303 45.455 0.00 0.00 0.00 3.86
2199 2811 3.243771 ACAACTAAACTCACCGACCAGAG 60.244 47.826 0.00 0.00 37.87 3.35
2200 2812 2.872732 ACTAAACTCACCGACCAGAGA 58.127 47.619 0.00 0.00 35.83 3.10
2201 2813 3.228453 ACTAAACTCACCGACCAGAGAA 58.772 45.455 0.00 0.00 35.83 2.87
2202 2814 2.821991 AAACTCACCGACCAGAGAAG 57.178 50.000 0.00 0.00 35.83 2.85
2203 2815 0.318762 AACTCACCGACCAGAGAAGC 59.681 55.000 0.00 0.00 35.83 3.86
2204 2816 0.827925 ACTCACCGACCAGAGAAGCA 60.828 55.000 0.00 0.00 35.83 3.91
2205 2817 0.318441 CTCACCGACCAGAGAAGCAA 59.682 55.000 0.00 0.00 33.74 3.91
2206 2818 0.976641 TCACCGACCAGAGAAGCAAT 59.023 50.000 0.00 0.00 0.00 3.56
2207 2819 1.066858 TCACCGACCAGAGAAGCAATC 60.067 52.381 0.00 0.00 0.00 2.67
2208 2820 0.250513 ACCGACCAGAGAAGCAATCC 59.749 55.000 0.00 0.00 0.00 3.01
2209 2821 0.250234 CCGACCAGAGAAGCAATCCA 59.750 55.000 0.00 0.00 0.00 3.41
2210 2822 1.339055 CCGACCAGAGAAGCAATCCAA 60.339 52.381 0.00 0.00 0.00 3.53
2211 2823 1.734465 CGACCAGAGAAGCAATCCAAC 59.266 52.381 0.00 0.00 0.00 3.77
2212 2824 2.087646 GACCAGAGAAGCAATCCAACC 58.912 52.381 0.00 0.00 0.00 3.77
2213 2825 1.425066 ACCAGAGAAGCAATCCAACCA 59.575 47.619 0.00 0.00 0.00 3.67
2214 2826 2.158475 ACCAGAGAAGCAATCCAACCAA 60.158 45.455 0.00 0.00 0.00 3.67
2215 2827 2.229784 CCAGAGAAGCAATCCAACCAAC 59.770 50.000 0.00 0.00 0.00 3.77
2216 2828 2.886523 CAGAGAAGCAATCCAACCAACA 59.113 45.455 0.00 0.00 0.00 3.33
2217 2829 3.318839 CAGAGAAGCAATCCAACCAACAA 59.681 43.478 0.00 0.00 0.00 2.83
2218 2830 3.319122 AGAGAAGCAATCCAACCAACAAC 59.681 43.478 0.00 0.00 0.00 3.32
2219 2831 3.299503 AGAAGCAATCCAACCAACAACT 58.700 40.909 0.00 0.00 0.00 3.16
2220 2832 4.469657 AGAAGCAATCCAACCAACAACTA 58.530 39.130 0.00 0.00 0.00 2.24
2221 2833 4.520492 AGAAGCAATCCAACCAACAACTAG 59.480 41.667 0.00 0.00 0.00 2.57
2222 2834 4.098914 AGCAATCCAACCAACAACTAGA 57.901 40.909 0.00 0.00 0.00 2.43
2223 2835 4.666512 AGCAATCCAACCAACAACTAGAT 58.333 39.130 0.00 0.00 0.00 1.98
2224 2836 4.460382 AGCAATCCAACCAACAACTAGATG 59.540 41.667 0.00 0.00 0.00 2.90
2225 2837 4.458989 GCAATCCAACCAACAACTAGATGA 59.541 41.667 7.05 0.00 0.00 2.92
2226 2838 5.048083 GCAATCCAACCAACAACTAGATGAA 60.048 40.000 7.05 0.00 0.00 2.57
2227 2839 6.381801 CAATCCAACCAACAACTAGATGAAC 58.618 40.000 7.05 0.00 0.00 3.18
2228 2840 5.042463 TCCAACCAACAACTAGATGAACA 57.958 39.130 7.05 0.00 0.00 3.18
2229 2841 5.441500 TCCAACCAACAACTAGATGAACAA 58.558 37.500 7.05 0.00 0.00 2.83
2230 2842 5.888724 TCCAACCAACAACTAGATGAACAAA 59.111 36.000 7.05 0.00 0.00 2.83
2231 2843 6.378564 TCCAACCAACAACTAGATGAACAAAA 59.621 34.615 7.05 0.00 0.00 2.44
2232 2844 6.697019 CCAACCAACAACTAGATGAACAAAAG 59.303 38.462 7.05 0.00 0.00 2.27
2233 2845 5.831997 ACCAACAACTAGATGAACAAAAGC 58.168 37.500 7.05 0.00 0.00 3.51
2234 2846 5.594317 ACCAACAACTAGATGAACAAAAGCT 59.406 36.000 7.05 0.00 0.00 3.74
2235 2847 6.145535 CCAACAACTAGATGAACAAAAGCTC 58.854 40.000 7.05 0.00 0.00 4.09
2236 2848 6.016777 CCAACAACTAGATGAACAAAAGCTCT 60.017 38.462 7.05 0.00 0.00 4.09
2237 2849 6.551385 ACAACTAGATGAACAAAAGCTCTG 57.449 37.500 7.05 0.00 0.00 3.35
2238 2850 6.291377 ACAACTAGATGAACAAAAGCTCTGA 58.709 36.000 7.05 0.00 0.00 3.27
2239 2851 6.767902 ACAACTAGATGAACAAAAGCTCTGAA 59.232 34.615 7.05 0.00 0.00 3.02
2240 2852 7.446625 ACAACTAGATGAACAAAAGCTCTGAAT 59.553 33.333 7.05 0.00 0.00 2.57
2241 2853 7.608308 ACTAGATGAACAAAAGCTCTGAATC 57.392 36.000 0.00 3.77 0.00 2.52
2242 2854 7.393216 ACTAGATGAACAAAAGCTCTGAATCT 58.607 34.615 0.00 9.40 0.00 2.40
2243 2855 8.535335 ACTAGATGAACAAAAGCTCTGAATCTA 58.465 33.333 0.00 9.87 0.00 1.98
2244 2856 7.846644 AGATGAACAAAAGCTCTGAATCTAG 57.153 36.000 2.91 0.00 0.00 2.43
2245 2857 5.869753 TGAACAAAAGCTCTGAATCTAGC 57.130 39.130 2.91 0.86 39.08 3.42
2246 2858 5.308014 TGAACAAAAGCTCTGAATCTAGCA 58.692 37.500 10.00 0.00 41.32 3.49
2247 2859 5.180117 TGAACAAAAGCTCTGAATCTAGCAC 59.820 40.000 10.00 0.00 41.32 4.40
2248 2860 4.006319 ACAAAAGCTCTGAATCTAGCACC 58.994 43.478 10.00 0.00 41.32 5.01
2249 2861 2.593346 AAGCTCTGAATCTAGCACCG 57.407 50.000 10.00 0.00 41.32 4.94
2250 2862 1.769026 AGCTCTGAATCTAGCACCGA 58.231 50.000 10.00 0.00 41.32 4.69
2251 2863 1.680735 AGCTCTGAATCTAGCACCGAG 59.319 52.381 10.00 0.00 41.32 4.63
2252 2864 1.269517 GCTCTGAATCTAGCACCGAGG 60.270 57.143 3.83 0.00 38.63 4.63
2253 2865 2.302260 CTCTGAATCTAGCACCGAGGA 58.698 52.381 0.00 0.00 0.00 3.71
2254 2866 2.025155 TCTGAATCTAGCACCGAGGAC 58.975 52.381 0.00 0.00 0.00 3.85
2255 2867 0.738975 TGAATCTAGCACCGAGGACG 59.261 55.000 0.00 0.00 39.43 4.79
2256 2868 0.595310 GAATCTAGCACCGAGGACGC 60.595 60.000 0.00 0.00 38.29 5.19
2257 2869 2.017559 AATCTAGCACCGAGGACGCC 62.018 60.000 0.00 0.00 38.29 5.68
2258 2870 4.554363 CTAGCACCGAGGACGCCG 62.554 72.222 0.00 0.00 38.29 6.46
2272 2884 4.451652 GCCGCGAGCAAGCAAGAC 62.452 66.667 8.23 0.00 42.97 3.01
2273 2885 3.043713 CCGCGAGCAAGCAAGACA 61.044 61.111 8.23 0.00 36.85 3.41
2274 2886 2.606961 CCGCGAGCAAGCAAGACAA 61.607 57.895 8.23 0.00 36.85 3.18
2275 2887 1.439365 CGCGAGCAAGCAAGACAAC 60.439 57.895 0.00 0.00 36.85 3.32
2276 2888 1.439365 GCGAGCAAGCAAGACAACG 60.439 57.895 0.00 0.00 37.05 4.10
2277 2889 1.439365 CGAGCAAGCAAGACAACGC 60.439 57.895 0.00 0.00 0.00 4.84
2278 2890 1.081840 GAGCAAGCAAGACAACGCC 60.082 57.895 0.00 0.00 0.00 5.68
2279 2891 1.510480 GAGCAAGCAAGACAACGCCT 61.510 55.000 0.00 0.00 0.00 5.52
2280 2892 1.103398 AGCAAGCAAGACAACGCCTT 61.103 50.000 0.00 0.00 0.00 4.35
2281 2893 0.661483 GCAAGCAAGACAACGCCTTC 60.661 55.000 0.00 0.00 0.00 3.46
2282 2894 0.662619 CAAGCAAGACAACGCCTTCA 59.337 50.000 0.00 0.00 0.00 3.02
2283 2895 1.065401 CAAGCAAGACAACGCCTTCAA 59.935 47.619 0.00 0.00 0.00 2.69
2284 2896 0.947244 AGCAAGACAACGCCTTCAAG 59.053 50.000 0.00 0.00 0.00 3.02
2285 2897 0.944386 GCAAGACAACGCCTTCAAGA 59.056 50.000 0.00 0.00 0.00 3.02
2286 2898 1.333619 GCAAGACAACGCCTTCAAGAA 59.666 47.619 0.00 0.00 0.00 2.52
2287 2899 2.603173 GCAAGACAACGCCTTCAAGAAG 60.603 50.000 2.83 2.83 38.14 2.85
2299 2911 3.983741 CTTCAAGAAGGAGAACGACACT 58.016 45.455 1.86 0.00 34.87 3.55
2300 2912 3.371102 TCAAGAAGGAGAACGACACTG 57.629 47.619 0.00 0.00 0.00 3.66
2301 2913 2.956333 TCAAGAAGGAGAACGACACTGA 59.044 45.455 0.00 0.00 0.00 3.41
2302 2914 3.004839 TCAAGAAGGAGAACGACACTGAG 59.995 47.826 0.00 0.00 0.00 3.35
2303 2915 2.865079 AGAAGGAGAACGACACTGAGA 58.135 47.619 0.00 0.00 0.00 3.27
2304 2916 3.426615 AGAAGGAGAACGACACTGAGAT 58.573 45.455 0.00 0.00 0.00 2.75
2305 2917 3.192422 AGAAGGAGAACGACACTGAGATG 59.808 47.826 0.00 0.00 0.00 2.90
2306 2918 2.520069 AGGAGAACGACACTGAGATGT 58.480 47.619 0.00 0.00 34.78 3.06
2307 2919 2.490115 AGGAGAACGACACTGAGATGTC 59.510 50.000 0.00 5.48 44.68 3.06
2322 2934 1.723542 GATGTCATCATCACGCGATCC 59.276 52.381 15.93 0.00 46.78 3.36
2323 2935 0.746659 TGTCATCATCACGCGATCCT 59.253 50.000 15.93 0.00 0.00 3.24
2324 2936 1.135046 GTCATCATCACGCGATCCTG 58.865 55.000 15.93 0.00 0.00 3.86
2325 2937 1.032014 TCATCATCACGCGATCCTGA 58.968 50.000 15.93 6.30 0.00 3.86
2326 2938 1.408702 TCATCATCACGCGATCCTGAA 59.591 47.619 15.93 0.00 0.00 3.02
2327 2939 2.159114 TCATCATCACGCGATCCTGAAA 60.159 45.455 15.93 0.00 0.00 2.69
2328 2940 2.602257 TCATCACGCGATCCTGAAAT 57.398 45.000 15.93 0.00 0.00 2.17
2329 2941 2.905075 TCATCACGCGATCCTGAAATT 58.095 42.857 15.93 0.00 0.00 1.82
2330 2942 2.866156 TCATCACGCGATCCTGAAATTC 59.134 45.455 15.93 0.00 0.00 2.17
2331 2943 1.277326 TCACGCGATCCTGAAATTCG 58.723 50.000 15.93 0.00 36.02 3.34
2332 2944 1.135228 TCACGCGATCCTGAAATTCGA 60.135 47.619 15.93 0.00 34.92 3.71
2333 2945 1.658596 CACGCGATCCTGAAATTCGAA 59.341 47.619 15.93 0.00 34.92 3.71
2334 2946 1.659098 ACGCGATCCTGAAATTCGAAC 59.341 47.619 15.93 0.00 34.92 3.95
2335 2947 1.004927 CGCGATCCTGAAATTCGAACC 60.005 52.381 0.00 0.00 34.92 3.62
2336 2948 2.280628 GCGATCCTGAAATTCGAACCT 58.719 47.619 0.00 0.00 34.92 3.50
2337 2949 3.454375 GCGATCCTGAAATTCGAACCTA 58.546 45.455 0.00 0.00 34.92 3.08
2338 2950 3.491267 GCGATCCTGAAATTCGAACCTAG 59.509 47.826 0.00 0.00 34.92 3.02
2339 2951 4.051922 CGATCCTGAAATTCGAACCTAGG 58.948 47.826 7.41 7.41 34.92 3.02
2340 2952 3.906720 TCCTGAAATTCGAACCTAGGG 57.093 47.619 14.81 0.80 0.00 3.53
2341 2953 3.178865 TCCTGAAATTCGAACCTAGGGT 58.821 45.455 14.81 6.29 37.65 4.34
2343 2955 4.042435 TCCTGAAATTCGAACCTAGGGTTT 59.958 41.667 14.81 0.00 46.95 3.27
2344 2956 4.395231 CCTGAAATTCGAACCTAGGGTTTC 59.605 45.833 14.81 7.49 46.95 2.78
2345 2957 5.237236 TGAAATTCGAACCTAGGGTTTCT 57.763 39.130 14.81 0.00 46.95 2.52
2346 2958 5.243207 TGAAATTCGAACCTAGGGTTTCTC 58.757 41.667 14.81 3.01 46.95 2.87
2347 2959 3.908643 ATTCGAACCTAGGGTTTCTCC 57.091 47.619 14.81 0.00 46.95 3.71
2348 2960 2.617840 TCGAACCTAGGGTTTCTCCT 57.382 50.000 14.81 0.00 46.95 3.69
2349 2961 2.176889 TCGAACCTAGGGTTTCTCCTG 58.823 52.381 14.81 0.00 46.95 3.86
2350 2962 2.176889 CGAACCTAGGGTTTCTCCTGA 58.823 52.381 14.81 0.00 46.95 3.86
2351 2963 2.766828 CGAACCTAGGGTTTCTCCTGAT 59.233 50.000 14.81 0.00 46.95 2.90
2352 2964 3.430929 CGAACCTAGGGTTTCTCCTGATG 60.431 52.174 14.81 0.00 46.95 3.07
2353 2965 1.840635 ACCTAGGGTTTCTCCTGATGC 59.159 52.381 14.81 0.00 37.75 3.91
2354 2966 2.122768 CCTAGGGTTTCTCCTGATGCT 58.877 52.381 0.00 0.00 37.75 3.79
2355 2967 2.103941 CCTAGGGTTTCTCCTGATGCTC 59.896 54.545 0.00 0.00 37.75 4.26
2356 2968 0.539051 AGGGTTTCTCCTGATGCTCG 59.461 55.000 0.00 0.00 35.47 5.03
2357 2969 0.537188 GGGTTTCTCCTGATGCTCGA 59.463 55.000 0.00 0.00 36.25 4.04
2358 2970 1.066143 GGGTTTCTCCTGATGCTCGAA 60.066 52.381 0.00 0.00 36.25 3.71
2359 2971 2.275318 GGTTTCTCCTGATGCTCGAAG 58.725 52.381 0.00 0.00 0.00 3.79
2360 2972 2.093973 GGTTTCTCCTGATGCTCGAAGA 60.094 50.000 0.00 0.00 0.00 2.87
2361 2973 6.992755 GGGTTTCTCCTGATGCTCGAAGAG 62.993 54.167 0.00 0.00 46.90 2.85
2374 2986 3.992943 TCGAAGAGGGGCATAGAAAAA 57.007 42.857 0.00 0.00 0.00 1.94
2375 2987 3.606687 TCGAAGAGGGGCATAGAAAAAC 58.393 45.455 0.00 0.00 0.00 2.43
2376 2988 2.351726 CGAAGAGGGGCATAGAAAAACG 59.648 50.000 0.00 0.00 0.00 3.60
2377 2989 2.420058 AGAGGGGCATAGAAAAACGG 57.580 50.000 0.00 0.00 0.00 4.44
2378 2990 0.738975 GAGGGGCATAGAAAAACGGC 59.261 55.000 0.00 0.00 0.00 5.68
2379 2991 0.683179 AGGGGCATAGAAAAACGGCC 60.683 55.000 0.00 0.00 43.86 6.13
2380 2992 0.968393 GGGGCATAGAAAAACGGCCA 60.968 55.000 2.24 0.00 46.37 5.36
2381 2993 1.111277 GGGCATAGAAAAACGGCCAT 58.889 50.000 2.24 0.00 46.37 4.40
2382 2994 1.202405 GGGCATAGAAAAACGGCCATG 60.202 52.381 2.24 0.00 46.37 3.66
2383 2995 1.202405 GGCATAGAAAAACGGCCATGG 60.202 52.381 7.63 7.63 44.01 3.66
2384 2996 1.802508 GCATAGAAAAACGGCCATGGC 60.803 52.381 29.47 29.47 41.06 4.40
2385 2997 1.476085 CATAGAAAAACGGCCATGGCA 59.524 47.619 36.56 14.57 44.11 4.92
2397 3009 2.050350 CATGGCAGCTGTTGGGGAG 61.050 63.158 16.64 0.00 0.00 4.30
2441 3055 0.037697 ATCCTACGCACACGCAAGAA 60.038 50.000 0.00 0.00 45.53 2.52
2573 3188 1.270550 ACCGATCAAGTACCGAACGTT 59.729 47.619 0.00 0.00 0.00 3.99
2796 3416 8.577048 AGAGATCAATGATCAATTGTTGTCTT 57.423 30.769 23.41 0.00 41.99 3.01
2942 3566 2.502130 GAGTAGGAGTCAAGGAAAGGGG 59.498 54.545 0.00 0.00 0.00 4.79
3008 3632 1.065418 CAATTCGGACTAGGCCTTGGT 60.065 52.381 12.58 11.15 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.063180 CGCTGAAGTTCATTCCTTGCTAG 59.937 47.826 5.91 0.00 37.08 3.42
60 61 2.939103 GACAAGCAAGCCTCGTTCATAT 59.061 45.455 0.00 0.00 0.00 1.78
275 276 4.803426 GCACTCCCTCCGTCAGCG 62.803 72.222 0.00 0.00 37.95 5.18
505 506 4.624913 TCCCCATAGTTCTTGATCTCACT 58.375 43.478 0.00 0.00 0.00 3.41
507 508 4.971282 ACATCCCCATAGTTCTTGATCTCA 59.029 41.667 0.00 0.00 0.00 3.27
778 780 5.518812 TGTATGCCGCATCAAATTATCAAC 58.481 37.500 9.71 0.00 0.00 3.18
784 788 4.819769 ACTTTTGTATGCCGCATCAAATT 58.180 34.783 21.30 13.85 31.45 1.82
790 794 8.296713 CCTTTTATATACTTTTGTATGCCGCAT 58.703 33.333 11.38 11.38 44.60 4.73
803 807 9.910267 AATCGGTTTGTACCCTTTTATATACTT 57.090 29.630 0.00 0.00 41.75 2.24
813 817 4.989277 ACCTTAAATCGGTTTGTACCCTT 58.011 39.130 3.29 0.00 41.75 3.95
839 844 5.741011 TCAAGTCCAAGTCAGTTTTGTACT 58.259 37.500 0.00 0.00 37.68 2.73
860 865 9.516546 AGATAGTCATTATGGTATACGACTTCA 57.483 33.333 12.23 0.00 35.47 3.02
925 931 2.040544 GTCCAGTTGGCCGATGTGG 61.041 63.158 15.58 15.58 42.50 4.17
1024 1078 1.615392 AGGATGTTCTGCTTTTGGTGC 59.385 47.619 0.00 0.00 0.00 5.01
1437 1533 1.115930 ACCACACGAGCTTCTCCACT 61.116 55.000 0.00 0.00 0.00 4.00
1479 1575 3.322466 AGTGCGCCAGGGCTAGTT 61.322 61.111 4.18 0.00 39.32 2.24
1492 1626 1.661509 GGAACAAAAGCGCCAGTGC 60.662 57.895 2.29 0.00 0.00 4.40
1493 1627 1.370414 CGGAACAAAAGCGCCAGTG 60.370 57.895 2.29 1.27 0.00 3.66
1494 1628 2.551912 CCGGAACAAAAGCGCCAGT 61.552 57.895 2.29 0.00 0.00 4.00
1495 1629 2.255252 CCGGAACAAAAGCGCCAG 59.745 61.111 2.29 0.00 0.00 4.85
1520 1657 2.655044 GCGTGCAACACAACAGCC 60.655 61.111 0.00 0.00 35.74 4.85
1527 1664 0.040425 ATCTTTTCGGCGTGCAACAC 60.040 50.000 6.85 0.00 35.74 3.32
1639 1784 1.449070 GAACCCCTTCCTTACGCCG 60.449 63.158 0.00 0.00 0.00 6.46
1663 1808 2.072654 GCTTTTTGTGTACGCGGCG 61.073 57.895 22.36 22.36 0.00 6.46
1666 1811 1.117234 GGTTGCTTTTTGTGTACGCG 58.883 50.000 3.53 3.53 0.00 6.01
1667 1812 1.117234 CGGTTGCTTTTTGTGTACGC 58.883 50.000 0.00 0.00 0.00 4.42
1669 1814 2.097791 TCCACGGTTGCTTTTTGTGTAC 59.902 45.455 0.00 0.00 0.00 2.90
1670 1815 2.356382 CTCCACGGTTGCTTTTTGTGTA 59.644 45.455 0.00 0.00 0.00 2.90
1671 1816 1.134175 CTCCACGGTTGCTTTTTGTGT 59.866 47.619 0.00 0.00 0.00 3.72
1672 1817 1.535860 CCTCCACGGTTGCTTTTTGTG 60.536 52.381 0.00 0.00 0.00 3.33
1673 1818 0.744281 CCTCCACGGTTGCTTTTTGT 59.256 50.000 0.00 0.00 0.00 2.83
1674 1819 0.031994 CCCTCCACGGTTGCTTTTTG 59.968 55.000 0.00 0.00 0.00 2.44
1675 1820 1.112916 CCCCTCCACGGTTGCTTTTT 61.113 55.000 0.00 0.00 0.00 1.94
1676 1821 1.530655 CCCCTCCACGGTTGCTTTT 60.531 57.895 0.00 0.00 0.00 2.27
1677 1822 2.115266 CCCCTCCACGGTTGCTTT 59.885 61.111 0.00 0.00 0.00 3.51
1678 1823 4.660938 GCCCCTCCACGGTTGCTT 62.661 66.667 0.00 0.00 0.00 3.91
1787 2050 0.675633 ACAAAAGCACATGCAGTCCC 59.324 50.000 6.64 0.00 45.16 4.46
1788 2051 1.603678 CCACAAAAGCACATGCAGTCC 60.604 52.381 6.64 0.00 45.16 3.85
1856 2154 0.094730 GCCATTCGTGTTACTCGCAC 59.905 55.000 1.70 0.00 0.00 5.34
1866 2174 1.006086 TATTCGCAGTGCCATTCGTG 58.994 50.000 10.11 0.00 0.00 4.35
1867 2175 1.953559 ATATTCGCAGTGCCATTCGT 58.046 45.000 10.11 0.00 0.00 3.85
1868 2176 4.668576 AATATATTCGCAGTGCCATTCG 57.331 40.909 10.11 0.00 0.00 3.34
1869 2177 6.000891 TGAAATATATTCGCAGTGCCATTC 57.999 37.500 10.11 0.00 0.00 2.67
1962 2574 1.402984 GGAGTTGCACAGACGAGTAGG 60.403 57.143 0.00 0.00 0.00 3.18
1963 2575 1.542030 AGGAGTTGCACAGACGAGTAG 59.458 52.381 0.00 0.00 0.00 2.57
2044 2656 9.715123 CAATGCAATGATACACGTATTCTAAAA 57.285 29.630 0.00 0.00 0.00 1.52
2045 2657 9.103861 TCAATGCAATGATACACGTATTCTAAA 57.896 29.630 0.00 0.00 0.00 1.85
2046 2658 8.655651 TCAATGCAATGATACACGTATTCTAA 57.344 30.769 0.00 0.00 0.00 2.10
2047 2659 8.831715 ATCAATGCAATGATACACGTATTCTA 57.168 30.769 15.68 0.00 38.25 2.10
2048 2660 7.734924 ATCAATGCAATGATACACGTATTCT 57.265 32.000 15.68 0.00 38.25 2.40
2049 2661 8.925700 TCTATCAATGCAATGATACACGTATTC 58.074 33.333 18.52 0.00 40.44 1.75
2050 2662 8.831715 TCTATCAATGCAATGATACACGTATT 57.168 30.769 18.52 0.00 40.44 1.89
2051 2663 8.831715 TTCTATCAATGCAATGATACACGTAT 57.168 30.769 18.52 0.00 40.44 3.06
2052 2664 8.141268 TCTTCTATCAATGCAATGATACACGTA 58.859 33.333 18.52 1.94 40.44 3.57
2053 2665 6.986231 TCTTCTATCAATGCAATGATACACGT 59.014 34.615 18.52 0.00 40.44 4.49
2054 2666 7.412137 TCTTCTATCAATGCAATGATACACG 57.588 36.000 18.52 10.75 40.44 4.49
2055 2667 8.834465 ACTTCTTCTATCAATGCAATGATACAC 58.166 33.333 18.52 0.00 40.44 2.90
2056 2668 8.969260 ACTTCTTCTATCAATGCAATGATACA 57.031 30.769 18.52 7.87 40.44 2.29
2059 2671 9.842775 TCTAACTTCTTCTATCAATGCAATGAT 57.157 29.630 20.55 20.55 42.52 2.45
2060 2672 9.671279 TTCTAACTTCTTCTATCAATGCAATGA 57.329 29.630 6.97 6.97 0.00 2.57
2063 2675 9.671279 TCATTCTAACTTCTTCTATCAATGCAA 57.329 29.630 0.00 0.00 0.00 4.08
2064 2676 9.322773 CTCATTCTAACTTCTTCTATCAATGCA 57.677 33.333 0.00 0.00 0.00 3.96
2065 2677 9.323985 ACTCATTCTAACTTCTTCTATCAATGC 57.676 33.333 0.00 0.00 0.00 3.56
2073 2685 8.091449 CCTGTTGTACTCATTCTAACTTCTTCT 58.909 37.037 0.00 0.00 0.00 2.85
2074 2686 7.873505 ACCTGTTGTACTCATTCTAACTTCTTC 59.126 37.037 0.00 0.00 0.00 2.87
2075 2687 7.657761 CACCTGTTGTACTCATTCTAACTTCTT 59.342 37.037 0.00 0.00 0.00 2.52
2076 2688 7.155328 CACCTGTTGTACTCATTCTAACTTCT 58.845 38.462 0.00 0.00 0.00 2.85
2077 2689 6.369065 CCACCTGTTGTACTCATTCTAACTTC 59.631 42.308 0.00 0.00 0.00 3.01
2078 2690 6.183361 ACCACCTGTTGTACTCATTCTAACTT 60.183 38.462 0.00 0.00 0.00 2.66
2079 2691 5.307196 ACCACCTGTTGTACTCATTCTAACT 59.693 40.000 0.00 0.00 0.00 2.24
2080 2692 5.548406 ACCACCTGTTGTACTCATTCTAAC 58.452 41.667 0.00 0.00 0.00 2.34
2081 2693 5.818678 ACCACCTGTTGTACTCATTCTAA 57.181 39.130 0.00 0.00 0.00 2.10
2082 2694 5.776208 TGTACCACCTGTTGTACTCATTCTA 59.224 40.000 11.50 0.00 38.48 2.10
2083 2695 4.591498 TGTACCACCTGTTGTACTCATTCT 59.409 41.667 11.50 0.00 38.48 2.40
2084 2696 4.890088 TGTACCACCTGTTGTACTCATTC 58.110 43.478 11.50 0.00 38.48 2.67
2085 2697 4.967084 TGTACCACCTGTTGTACTCATT 57.033 40.909 11.50 0.00 38.48 2.57
2086 2698 4.101898 TGTTGTACCACCTGTTGTACTCAT 59.898 41.667 11.50 0.00 38.48 2.90
2087 2699 3.451540 TGTTGTACCACCTGTTGTACTCA 59.548 43.478 11.50 8.60 38.48 3.41
2088 2700 3.805971 GTGTTGTACCACCTGTTGTACTC 59.194 47.826 11.50 6.77 38.48 2.59
2089 2701 3.198200 TGTGTTGTACCACCTGTTGTACT 59.802 43.478 11.50 0.00 38.48 2.73
2090 2702 3.533547 TGTGTTGTACCACCTGTTGTAC 58.466 45.455 5.07 5.07 38.22 2.90
2091 2703 3.908643 TGTGTTGTACCACCTGTTGTA 57.091 42.857 0.00 0.00 34.35 2.41
2092 2704 2.791347 TGTGTTGTACCACCTGTTGT 57.209 45.000 0.00 0.00 34.35 3.32
2093 2705 3.003275 GTCATGTGTTGTACCACCTGTTG 59.997 47.826 7.18 0.00 34.04 3.33
2094 2706 3.211045 GTCATGTGTTGTACCACCTGTT 58.789 45.455 7.18 0.00 34.04 3.16
2095 2707 2.171659 TGTCATGTGTTGTACCACCTGT 59.828 45.455 7.18 0.00 34.04 4.00
2096 2708 2.548057 GTGTCATGTGTTGTACCACCTG 59.452 50.000 0.00 0.00 34.35 4.00
2097 2709 2.805295 CGTGTCATGTGTTGTACCACCT 60.805 50.000 0.00 0.00 34.35 4.00
2098 2710 1.529438 CGTGTCATGTGTTGTACCACC 59.471 52.381 0.00 0.00 34.35 4.61
2099 2711 1.529438 CCGTGTCATGTGTTGTACCAC 59.471 52.381 0.00 0.00 35.86 4.16
2100 2712 1.413077 TCCGTGTCATGTGTTGTACCA 59.587 47.619 0.00 0.00 0.00 3.25
2101 2713 2.157834 TCCGTGTCATGTGTTGTACC 57.842 50.000 0.00 0.00 0.00 3.34
2102 2714 2.159707 GCATCCGTGTCATGTGTTGTAC 60.160 50.000 0.00 0.00 0.00 2.90
2103 2715 2.073056 GCATCCGTGTCATGTGTTGTA 58.927 47.619 0.00 0.00 0.00 2.41
2104 2716 0.874390 GCATCCGTGTCATGTGTTGT 59.126 50.000 0.00 0.00 0.00 3.32
2105 2717 0.179217 CGCATCCGTGTCATGTGTTG 60.179 55.000 0.00 0.00 0.00 3.33
2106 2718 0.320334 TCGCATCCGTGTCATGTGTT 60.320 50.000 0.00 0.00 34.07 3.32
2107 2719 0.737367 CTCGCATCCGTGTCATGTGT 60.737 55.000 0.00 0.00 34.07 3.72
2108 2720 1.423721 CCTCGCATCCGTGTCATGTG 61.424 60.000 0.00 0.00 35.54 3.21
2109 2721 1.153568 CCTCGCATCCGTGTCATGT 60.154 57.895 0.00 0.00 35.54 3.21
2110 2722 1.884464 CCCTCGCATCCGTGTCATG 60.884 63.158 0.00 0.00 35.54 3.07
2111 2723 2.501128 CCCTCGCATCCGTGTCAT 59.499 61.111 0.00 0.00 35.54 3.06
2112 2724 3.770040 CCCCTCGCATCCGTGTCA 61.770 66.667 0.00 0.00 35.54 3.58
2118 2730 4.467084 TTCACGCCCCTCGCATCC 62.467 66.667 0.00 0.00 43.23 3.51
2119 2731 3.195698 GTTCACGCCCCTCGCATC 61.196 66.667 0.00 0.00 43.23 3.91
2120 2732 3.329542 ATGTTCACGCCCCTCGCAT 62.330 57.895 0.00 0.00 43.23 4.73
2121 2733 4.015406 ATGTTCACGCCCCTCGCA 62.015 61.111 0.00 0.00 43.23 5.10
2122 2734 3.499737 CATGTTCACGCCCCTCGC 61.500 66.667 0.00 0.00 43.23 5.03
2123 2735 2.819595 CCATGTTCACGCCCCTCG 60.820 66.667 0.00 0.00 45.38 4.63
2124 2736 1.450312 CTCCATGTTCACGCCCCTC 60.450 63.158 0.00 0.00 0.00 4.30
2125 2737 1.903877 CTCTCCATGTTCACGCCCCT 61.904 60.000 0.00 0.00 0.00 4.79
2126 2738 1.450312 CTCTCCATGTTCACGCCCC 60.450 63.158 0.00 0.00 0.00 5.80
2127 2739 1.450312 CCTCTCCATGTTCACGCCC 60.450 63.158 0.00 0.00 0.00 6.13
2128 2740 2.109126 GCCTCTCCATGTTCACGCC 61.109 63.158 0.00 0.00 0.00 5.68
2129 2741 0.745845 ATGCCTCTCCATGTTCACGC 60.746 55.000 0.00 0.00 0.00 5.34
2130 2742 2.602257 TATGCCTCTCCATGTTCACG 57.398 50.000 0.00 0.00 0.00 4.35
2131 2743 5.585390 CATTTTATGCCTCTCCATGTTCAC 58.415 41.667 0.00 0.00 0.00 3.18
2132 2744 5.840243 CATTTTATGCCTCTCCATGTTCA 57.160 39.130 0.00 0.00 0.00 3.18
2146 2758 4.898829 TGATTGGGTCGAGCATTTTATG 57.101 40.909 17.59 0.00 0.00 1.90
2147 2759 5.652014 TCTTTGATTGGGTCGAGCATTTTAT 59.348 36.000 17.59 1.65 0.00 1.40
2148 2760 5.007034 TCTTTGATTGGGTCGAGCATTTTA 58.993 37.500 17.59 0.00 0.00 1.52
2149 2761 3.826157 TCTTTGATTGGGTCGAGCATTTT 59.174 39.130 17.59 0.00 0.00 1.82
2150 2762 3.420893 TCTTTGATTGGGTCGAGCATTT 58.579 40.909 17.59 0.00 0.00 2.32
2151 2763 3.071874 TCTTTGATTGGGTCGAGCATT 57.928 42.857 17.59 0.00 0.00 3.56
2152 2764 2.787473 TCTTTGATTGGGTCGAGCAT 57.213 45.000 17.59 1.57 0.00 3.79
2153 2765 2.038426 TCTTCTTTGATTGGGTCGAGCA 59.962 45.455 17.59 0.00 0.00 4.26
2154 2766 2.699954 TCTTCTTTGATTGGGTCGAGC 58.300 47.619 5.93 5.93 0.00 5.03
2155 2767 4.065088 TGTTCTTCTTTGATTGGGTCGAG 58.935 43.478 0.00 0.00 0.00 4.04
2156 2768 3.813166 GTGTTCTTCTTTGATTGGGTCGA 59.187 43.478 0.00 0.00 0.00 4.20
2157 2769 3.563808 TGTGTTCTTCTTTGATTGGGTCG 59.436 43.478 0.00 0.00 0.00 4.79
2158 2770 5.067805 AGTTGTGTTCTTCTTTGATTGGGTC 59.932 40.000 0.00 0.00 0.00 4.46
2159 2771 4.956075 AGTTGTGTTCTTCTTTGATTGGGT 59.044 37.500 0.00 0.00 0.00 4.51
2160 2772 5.520376 AGTTGTGTTCTTCTTTGATTGGG 57.480 39.130 0.00 0.00 0.00 4.12
2161 2773 8.190784 AGTTTAGTTGTGTTCTTCTTTGATTGG 58.809 33.333 0.00 0.00 0.00 3.16
2162 2774 9.226345 GAGTTTAGTTGTGTTCTTCTTTGATTG 57.774 33.333 0.00 0.00 0.00 2.67
2163 2775 8.956426 TGAGTTTAGTTGTGTTCTTCTTTGATT 58.044 29.630 0.00 0.00 0.00 2.57
2164 2776 8.398665 GTGAGTTTAGTTGTGTTCTTCTTTGAT 58.601 33.333 0.00 0.00 0.00 2.57
2165 2777 7.148306 GGTGAGTTTAGTTGTGTTCTTCTTTGA 60.148 37.037 0.00 0.00 0.00 2.69
2166 2778 6.967199 GGTGAGTTTAGTTGTGTTCTTCTTTG 59.033 38.462 0.00 0.00 0.00 2.77
2167 2779 6.183360 CGGTGAGTTTAGTTGTGTTCTTCTTT 60.183 38.462 0.00 0.00 0.00 2.52
2168 2780 5.293569 CGGTGAGTTTAGTTGTGTTCTTCTT 59.706 40.000 0.00 0.00 0.00 2.52
2169 2781 4.809426 CGGTGAGTTTAGTTGTGTTCTTCT 59.191 41.667 0.00 0.00 0.00 2.85
2170 2782 4.807304 TCGGTGAGTTTAGTTGTGTTCTTC 59.193 41.667 0.00 0.00 0.00 2.87
2171 2783 4.569564 GTCGGTGAGTTTAGTTGTGTTCTT 59.430 41.667 0.00 0.00 0.00 2.52
2172 2784 4.117685 GTCGGTGAGTTTAGTTGTGTTCT 58.882 43.478 0.00 0.00 0.00 3.01
2173 2785 3.246936 GGTCGGTGAGTTTAGTTGTGTTC 59.753 47.826 0.00 0.00 0.00 3.18
2174 2786 3.200483 GGTCGGTGAGTTTAGTTGTGTT 58.800 45.455 0.00 0.00 0.00 3.32
2175 2787 2.168936 TGGTCGGTGAGTTTAGTTGTGT 59.831 45.455 0.00 0.00 0.00 3.72
2176 2788 2.800544 CTGGTCGGTGAGTTTAGTTGTG 59.199 50.000 0.00 0.00 0.00 3.33
2177 2789 2.696707 TCTGGTCGGTGAGTTTAGTTGT 59.303 45.455 0.00 0.00 0.00 3.32
2178 2790 3.005472 TCTCTGGTCGGTGAGTTTAGTTG 59.995 47.826 0.00 0.00 0.00 3.16
2179 2791 3.228453 TCTCTGGTCGGTGAGTTTAGTT 58.772 45.455 0.00 0.00 0.00 2.24
2180 2792 2.872732 TCTCTGGTCGGTGAGTTTAGT 58.127 47.619 0.00 0.00 0.00 2.24
2181 2793 3.839293 CTTCTCTGGTCGGTGAGTTTAG 58.161 50.000 0.00 0.00 0.00 1.85
2182 2794 2.029290 GCTTCTCTGGTCGGTGAGTTTA 60.029 50.000 0.00 0.00 0.00 2.01
2183 2795 1.270358 GCTTCTCTGGTCGGTGAGTTT 60.270 52.381 0.00 0.00 0.00 2.66
2184 2796 0.318762 GCTTCTCTGGTCGGTGAGTT 59.681 55.000 0.00 0.00 0.00 3.01
2185 2797 0.827925 TGCTTCTCTGGTCGGTGAGT 60.828 55.000 0.00 0.00 0.00 3.41
2186 2798 0.318441 TTGCTTCTCTGGTCGGTGAG 59.682 55.000 0.00 0.00 0.00 3.51
2187 2799 0.976641 ATTGCTTCTCTGGTCGGTGA 59.023 50.000 0.00 0.00 0.00 4.02
2188 2800 1.363744 GATTGCTTCTCTGGTCGGTG 58.636 55.000 0.00 0.00 0.00 4.94
2189 2801 0.250513 GGATTGCTTCTCTGGTCGGT 59.749 55.000 0.00 0.00 0.00 4.69
2190 2802 0.250234 TGGATTGCTTCTCTGGTCGG 59.750 55.000 0.00 0.00 0.00 4.79
2191 2803 1.734465 GTTGGATTGCTTCTCTGGTCG 59.266 52.381 0.00 0.00 0.00 4.79
2192 2804 2.087646 GGTTGGATTGCTTCTCTGGTC 58.912 52.381 0.00 0.00 0.00 4.02
2193 2805 1.425066 TGGTTGGATTGCTTCTCTGGT 59.575 47.619 0.00 0.00 0.00 4.00
2194 2806 2.205022 TGGTTGGATTGCTTCTCTGG 57.795 50.000 0.00 0.00 0.00 3.86
2195 2807 2.886523 TGTTGGTTGGATTGCTTCTCTG 59.113 45.455 0.00 0.00 0.00 3.35
2196 2808 3.228188 TGTTGGTTGGATTGCTTCTCT 57.772 42.857 0.00 0.00 0.00 3.10
2197 2809 3.319122 AGTTGTTGGTTGGATTGCTTCTC 59.681 43.478 0.00 0.00 0.00 2.87
2198 2810 3.299503 AGTTGTTGGTTGGATTGCTTCT 58.700 40.909 0.00 0.00 0.00 2.85
2199 2811 3.733443 AGTTGTTGGTTGGATTGCTTC 57.267 42.857 0.00 0.00 0.00 3.86
2200 2812 4.469657 TCTAGTTGTTGGTTGGATTGCTT 58.530 39.130 0.00 0.00 0.00 3.91
2201 2813 4.098914 TCTAGTTGTTGGTTGGATTGCT 57.901 40.909 0.00 0.00 0.00 3.91
2202 2814 4.458989 TCATCTAGTTGTTGGTTGGATTGC 59.541 41.667 0.83 0.00 0.00 3.56
2203 2815 6.016360 TGTTCATCTAGTTGTTGGTTGGATTG 60.016 38.462 0.83 0.00 0.00 2.67
2204 2816 6.068010 TGTTCATCTAGTTGTTGGTTGGATT 58.932 36.000 0.83 0.00 0.00 3.01
2205 2817 5.630121 TGTTCATCTAGTTGTTGGTTGGAT 58.370 37.500 0.83 0.00 0.00 3.41
2206 2818 5.042463 TGTTCATCTAGTTGTTGGTTGGA 57.958 39.130 0.83 0.00 0.00 3.53
2207 2819 5.766150 TTGTTCATCTAGTTGTTGGTTGG 57.234 39.130 0.83 0.00 0.00 3.77
2208 2820 6.198966 GCTTTTGTTCATCTAGTTGTTGGTTG 59.801 38.462 0.83 0.00 0.00 3.77
2209 2821 6.096846 AGCTTTTGTTCATCTAGTTGTTGGTT 59.903 34.615 0.83 0.00 0.00 3.67
2210 2822 5.594317 AGCTTTTGTTCATCTAGTTGTTGGT 59.406 36.000 0.83 0.00 0.00 3.67
2211 2823 6.016777 AGAGCTTTTGTTCATCTAGTTGTTGG 60.017 38.462 0.83 0.00 31.68 3.77
2212 2824 6.854892 CAGAGCTTTTGTTCATCTAGTTGTTG 59.145 38.462 0.83 0.00 31.68 3.33
2213 2825 6.767902 TCAGAGCTTTTGTTCATCTAGTTGTT 59.232 34.615 0.83 0.00 31.68 2.83
2214 2826 6.291377 TCAGAGCTTTTGTTCATCTAGTTGT 58.709 36.000 0.83 0.00 31.68 3.32
2215 2827 6.791887 TCAGAGCTTTTGTTCATCTAGTTG 57.208 37.500 0.00 0.00 31.68 3.16
2216 2828 7.882271 AGATTCAGAGCTTTTGTTCATCTAGTT 59.118 33.333 0.00 0.00 31.68 2.24
2217 2829 7.393216 AGATTCAGAGCTTTTGTTCATCTAGT 58.607 34.615 0.00 0.00 31.68 2.57
2218 2830 7.846644 AGATTCAGAGCTTTTGTTCATCTAG 57.153 36.000 0.00 0.00 31.68 2.43
2219 2831 7.493971 GCTAGATTCAGAGCTTTTGTTCATCTA 59.506 37.037 0.00 3.74 35.73 1.98
2220 2832 6.315891 GCTAGATTCAGAGCTTTTGTTCATCT 59.684 38.462 0.00 2.83 35.73 2.90
2221 2833 6.093219 TGCTAGATTCAGAGCTTTTGTTCATC 59.907 38.462 10.75 0.00 39.54 2.92
2222 2834 5.942236 TGCTAGATTCAGAGCTTTTGTTCAT 59.058 36.000 10.75 0.00 39.54 2.57
2223 2835 5.180117 GTGCTAGATTCAGAGCTTTTGTTCA 59.820 40.000 10.75 0.00 39.54 3.18
2224 2836 5.391416 GGTGCTAGATTCAGAGCTTTTGTTC 60.391 44.000 10.75 0.00 39.54 3.18
2225 2837 4.457257 GGTGCTAGATTCAGAGCTTTTGTT 59.543 41.667 10.75 0.00 39.54 2.83
2226 2838 4.006319 GGTGCTAGATTCAGAGCTTTTGT 58.994 43.478 10.75 0.00 39.54 2.83
2227 2839 3.063180 CGGTGCTAGATTCAGAGCTTTTG 59.937 47.826 10.75 0.00 39.54 2.44
2228 2840 3.055819 TCGGTGCTAGATTCAGAGCTTTT 60.056 43.478 10.75 0.00 39.54 2.27
2229 2841 2.497675 TCGGTGCTAGATTCAGAGCTTT 59.502 45.455 10.75 0.00 39.54 3.51
2230 2842 2.100584 CTCGGTGCTAGATTCAGAGCTT 59.899 50.000 10.75 0.00 39.54 3.74
2231 2843 1.680735 CTCGGTGCTAGATTCAGAGCT 59.319 52.381 10.75 0.00 39.54 4.09
2232 2844 1.269517 CCTCGGTGCTAGATTCAGAGC 60.270 57.143 0.00 4.15 39.25 4.09
2233 2845 2.034053 GTCCTCGGTGCTAGATTCAGAG 59.966 54.545 0.00 0.00 0.00 3.35
2234 2846 2.025155 GTCCTCGGTGCTAGATTCAGA 58.975 52.381 0.00 0.00 0.00 3.27
2235 2847 1.268794 CGTCCTCGGTGCTAGATTCAG 60.269 57.143 0.00 0.00 0.00 3.02
2236 2848 0.738975 CGTCCTCGGTGCTAGATTCA 59.261 55.000 0.00 0.00 0.00 2.57
2237 2849 0.595310 GCGTCCTCGGTGCTAGATTC 60.595 60.000 0.00 0.00 37.56 2.52
2238 2850 1.437986 GCGTCCTCGGTGCTAGATT 59.562 57.895 0.00 0.00 37.56 2.40
2239 2851 2.491022 GGCGTCCTCGGTGCTAGAT 61.491 63.158 0.00 0.00 37.56 1.98
2240 2852 3.138798 GGCGTCCTCGGTGCTAGA 61.139 66.667 0.00 0.00 37.56 2.43
2241 2853 4.554363 CGGCGTCCTCGGTGCTAG 62.554 72.222 0.00 0.00 37.56 3.42
2255 2867 4.451652 GTCTTGCTTGCTCGCGGC 62.452 66.667 6.13 9.69 42.22 6.53
2256 2868 2.606961 TTGTCTTGCTTGCTCGCGG 61.607 57.895 6.13 0.00 0.00 6.46
2257 2869 1.439365 GTTGTCTTGCTTGCTCGCG 60.439 57.895 0.00 0.00 0.00 5.87
2258 2870 1.439365 CGTTGTCTTGCTTGCTCGC 60.439 57.895 0.00 0.00 0.00 5.03
2259 2871 1.439365 GCGTTGTCTTGCTTGCTCG 60.439 57.895 0.00 0.00 0.00 5.03
2260 2872 1.081840 GGCGTTGTCTTGCTTGCTC 60.082 57.895 0.00 0.00 0.00 4.26
2261 2873 1.103398 AAGGCGTTGTCTTGCTTGCT 61.103 50.000 0.00 0.00 0.00 3.91
2262 2874 0.661483 GAAGGCGTTGTCTTGCTTGC 60.661 55.000 0.00 0.00 0.00 4.01
2263 2875 0.662619 TGAAGGCGTTGTCTTGCTTG 59.337 50.000 0.00 0.00 0.00 4.01
2264 2876 1.334869 CTTGAAGGCGTTGTCTTGCTT 59.665 47.619 0.00 0.00 0.00 3.91
2265 2877 0.947244 CTTGAAGGCGTTGTCTTGCT 59.053 50.000 0.00 0.00 0.00 3.91
2266 2878 0.944386 TCTTGAAGGCGTTGTCTTGC 59.056 50.000 0.00 0.00 0.00 4.01
2267 2879 2.031682 CCTTCTTGAAGGCGTTGTCTTG 60.032 50.000 15.43 0.00 32.43 3.02
2268 2880 2.158813 TCCTTCTTGAAGGCGTTGTCTT 60.159 45.455 21.16 0.00 39.80 3.01
2269 2881 1.416401 TCCTTCTTGAAGGCGTTGTCT 59.584 47.619 21.16 0.00 39.80 3.41
2270 2882 1.801178 CTCCTTCTTGAAGGCGTTGTC 59.199 52.381 21.16 0.00 39.80 3.18
2271 2883 1.416401 TCTCCTTCTTGAAGGCGTTGT 59.584 47.619 21.16 0.00 39.80 3.32
2272 2884 2.169832 TCTCCTTCTTGAAGGCGTTG 57.830 50.000 21.16 12.43 39.80 4.10
2273 2885 2.495084 GTTCTCCTTCTTGAAGGCGTT 58.505 47.619 21.16 0.00 39.80 4.84
2274 2886 1.605712 CGTTCTCCTTCTTGAAGGCGT 60.606 52.381 21.16 0.00 39.80 5.68
2275 2887 1.071605 CGTTCTCCTTCTTGAAGGCG 58.928 55.000 21.16 16.54 39.80 5.52
2276 2888 2.070028 GTCGTTCTCCTTCTTGAAGGC 58.930 52.381 21.16 8.97 39.80 4.35
2277 2889 3.060602 GTGTCGTTCTCCTTCTTGAAGG 58.939 50.000 20.21 20.21 41.35 3.46
2278 2890 3.738282 CAGTGTCGTTCTCCTTCTTGAAG 59.262 47.826 3.55 3.55 0.00 3.02
2279 2891 3.383505 TCAGTGTCGTTCTCCTTCTTGAA 59.616 43.478 0.00 0.00 0.00 2.69
2280 2892 2.956333 TCAGTGTCGTTCTCCTTCTTGA 59.044 45.455 0.00 0.00 0.00 3.02
2281 2893 3.004839 TCTCAGTGTCGTTCTCCTTCTTG 59.995 47.826 0.00 0.00 0.00 3.02
2282 2894 3.223435 TCTCAGTGTCGTTCTCCTTCTT 58.777 45.455 0.00 0.00 0.00 2.52
2283 2895 2.865079 TCTCAGTGTCGTTCTCCTTCT 58.135 47.619 0.00 0.00 0.00 2.85
2284 2896 3.057174 ACATCTCAGTGTCGTTCTCCTTC 60.057 47.826 0.00 0.00 0.00 3.46
2285 2897 2.894126 ACATCTCAGTGTCGTTCTCCTT 59.106 45.455 0.00 0.00 0.00 3.36
2286 2898 2.490115 GACATCTCAGTGTCGTTCTCCT 59.510 50.000 0.00 0.00 39.12 3.69
2287 2899 2.869897 GACATCTCAGTGTCGTTCTCC 58.130 52.381 0.00 0.00 39.12 3.71
2303 2915 1.342496 AGGATCGCGTGATGATGACAT 59.658 47.619 17.73 0.00 39.67 3.06
2304 2916 0.746659 AGGATCGCGTGATGATGACA 59.253 50.000 17.73 0.00 34.09 3.58
2305 2917 1.135046 CAGGATCGCGTGATGATGAC 58.865 55.000 17.73 0.74 34.09 3.06
2306 2918 1.032014 TCAGGATCGCGTGATGATGA 58.968 50.000 17.73 16.20 34.27 2.92
2307 2919 1.856802 TTCAGGATCGCGTGATGATG 58.143 50.000 17.73 14.15 38.56 3.07
2308 2920 2.602257 TTTCAGGATCGCGTGATGAT 57.398 45.000 17.73 1.04 38.56 2.45
2309 2921 2.602257 ATTTCAGGATCGCGTGATGA 57.398 45.000 17.73 6.41 38.56 2.92
2310 2922 2.347939 CGAATTTCAGGATCGCGTGATG 60.348 50.000 17.73 3.70 38.56 3.07
2311 2923 1.860950 CGAATTTCAGGATCGCGTGAT 59.139 47.619 12.10 12.10 38.56 3.06
2312 2924 1.135228 TCGAATTTCAGGATCGCGTGA 60.135 47.619 5.77 0.00 37.15 4.35
2313 2925 1.277326 TCGAATTTCAGGATCGCGTG 58.723 50.000 5.77 0.00 36.56 5.34
2314 2926 1.659098 GTTCGAATTTCAGGATCGCGT 59.341 47.619 5.77 0.00 36.56 6.01
2315 2927 1.004927 GGTTCGAATTTCAGGATCGCG 60.005 52.381 0.00 0.00 36.56 5.87
2316 2928 2.280628 AGGTTCGAATTTCAGGATCGC 58.719 47.619 0.00 0.00 36.56 4.58
2317 2929 4.051922 CCTAGGTTCGAATTTCAGGATCG 58.948 47.826 0.00 0.00 37.90 3.69
2318 2930 4.141688 ACCCTAGGTTCGAATTTCAGGATC 60.142 45.833 8.29 0.00 27.29 3.36
2319 2931 3.780850 ACCCTAGGTTCGAATTTCAGGAT 59.219 43.478 8.29 0.72 27.29 3.24
2320 2932 3.178865 ACCCTAGGTTCGAATTTCAGGA 58.821 45.455 8.29 0.00 27.29 3.86
2321 2933 3.629142 ACCCTAGGTTCGAATTTCAGG 57.371 47.619 8.29 6.13 27.29 3.86
2322 2934 5.246307 AGAAACCCTAGGTTCGAATTTCAG 58.754 41.667 16.29 6.51 46.20 3.02
2323 2935 5.237236 AGAAACCCTAGGTTCGAATTTCA 57.763 39.130 16.29 0.00 46.20 2.69
2324 2936 4.634883 GGAGAAACCCTAGGTTCGAATTTC 59.365 45.833 8.29 5.60 46.20 2.17
2325 2937 4.288887 AGGAGAAACCCTAGGTTCGAATTT 59.711 41.667 8.29 0.00 46.20 1.82
2326 2938 3.844804 AGGAGAAACCCTAGGTTCGAATT 59.155 43.478 8.29 0.00 46.20 2.17
2327 2939 3.197983 CAGGAGAAACCCTAGGTTCGAAT 59.802 47.826 8.29 0.00 46.20 3.34
2328 2940 2.565834 CAGGAGAAACCCTAGGTTCGAA 59.434 50.000 8.29 0.00 46.20 3.71
2329 2941 2.176889 CAGGAGAAACCCTAGGTTCGA 58.823 52.381 8.29 0.00 46.20 3.71
2330 2942 2.176889 TCAGGAGAAACCCTAGGTTCG 58.823 52.381 8.29 0.00 46.20 3.95
2331 2943 3.682999 GCATCAGGAGAAACCCTAGGTTC 60.683 52.174 8.29 6.01 46.20 3.62
2332 2944 5.910400 GAGCATCAGGAGAAACCCTAGGTT 61.910 50.000 8.29 0.00 41.12 3.50
2333 2945 1.840635 GCATCAGGAGAAACCCTAGGT 59.159 52.381 8.29 0.00 40.05 3.08
2334 2946 2.103941 GAGCATCAGGAGAAACCCTAGG 59.896 54.545 0.06 0.06 40.05 3.02
2335 2947 2.223923 CGAGCATCAGGAGAAACCCTAG 60.224 54.545 0.00 0.00 40.05 3.02
2336 2948 1.757118 CGAGCATCAGGAGAAACCCTA 59.243 52.381 0.00 0.00 40.05 3.53
2337 2949 0.539051 CGAGCATCAGGAGAAACCCT 59.461 55.000 0.00 0.00 40.05 4.34
2338 2950 0.537188 TCGAGCATCAGGAGAAACCC 59.463 55.000 0.00 0.00 40.05 4.11
2339 2951 2.093973 TCTTCGAGCATCAGGAGAAACC 60.094 50.000 0.00 0.00 39.35 3.27
2340 2952 3.186119 CTCTTCGAGCATCAGGAGAAAC 58.814 50.000 0.00 0.00 33.17 2.78
2341 2953 2.167281 CCTCTTCGAGCATCAGGAGAAA 59.833 50.000 0.00 0.00 33.17 2.52
2342 2954 1.753649 CCTCTTCGAGCATCAGGAGAA 59.246 52.381 0.00 0.00 33.17 2.87
2343 2955 1.397672 CCTCTTCGAGCATCAGGAGA 58.602 55.000 0.00 0.00 33.17 3.71
2344 2956 0.388659 CCCTCTTCGAGCATCAGGAG 59.611 60.000 0.00 0.00 33.17 3.69
2345 2957 1.045350 CCCCTCTTCGAGCATCAGGA 61.045 60.000 0.00 0.00 33.17 3.86
2346 2958 1.445095 CCCCTCTTCGAGCATCAGG 59.555 63.158 0.00 0.00 33.17 3.86
2347 2959 1.227497 GCCCCTCTTCGAGCATCAG 60.227 63.158 0.00 0.00 33.17 2.90
2348 2960 1.340399 ATGCCCCTCTTCGAGCATCA 61.340 55.000 2.03 0.00 42.05 3.07
2349 2961 0.681733 TATGCCCCTCTTCGAGCATC 59.318 55.000 10.44 0.00 44.48 3.91
2350 2962 3.652687 ATGCCCCTCTTCGAGCAT 58.347 55.556 2.03 2.03 41.01 3.79
2351 2963 0.397114 TCTATGCCCCTCTTCGAGCA 60.397 55.000 0.00 0.00 40.00 4.26
2352 2964 0.753262 TTCTATGCCCCTCTTCGAGC 59.247 55.000 0.00 0.00 0.00 5.03
2353 2965 3.543680 TTTTCTATGCCCCTCTTCGAG 57.456 47.619 0.00 0.00 0.00 4.04
2354 2966 3.606687 GTTTTTCTATGCCCCTCTTCGA 58.393 45.455 0.00 0.00 0.00 3.71
2355 2967 2.351726 CGTTTTTCTATGCCCCTCTTCG 59.648 50.000 0.00 0.00 0.00 3.79
2356 2968 2.683362 CCGTTTTTCTATGCCCCTCTTC 59.317 50.000 0.00 0.00 0.00 2.87
2357 2969 2.723273 CCGTTTTTCTATGCCCCTCTT 58.277 47.619 0.00 0.00 0.00 2.85
2358 2970 1.682087 GCCGTTTTTCTATGCCCCTCT 60.682 52.381 0.00 0.00 0.00 3.69
2359 2971 0.738975 GCCGTTTTTCTATGCCCCTC 59.261 55.000 0.00 0.00 0.00 4.30
2360 2972 0.683179 GGCCGTTTTTCTATGCCCCT 60.683 55.000 0.00 0.00 36.07 4.79
2361 2973 0.968393 TGGCCGTTTTTCTATGCCCC 60.968 55.000 0.00 0.00 41.46 5.80
2362 2974 1.111277 ATGGCCGTTTTTCTATGCCC 58.889 50.000 0.00 0.00 41.46 5.36
2363 2975 1.202405 CCATGGCCGTTTTTCTATGCC 60.202 52.381 0.00 0.00 42.49 4.40
2364 2976 1.802508 GCCATGGCCGTTTTTCTATGC 60.803 52.381 27.24 0.00 34.56 3.14
2365 2977 1.476085 TGCCATGGCCGTTTTTCTATG 59.524 47.619 33.44 0.00 41.09 2.23
2366 2978 1.750778 CTGCCATGGCCGTTTTTCTAT 59.249 47.619 33.44 0.00 41.09 1.98
2367 2979 1.173043 CTGCCATGGCCGTTTTTCTA 58.827 50.000 33.44 10.87 41.09 2.10
2368 2980 1.966762 CTGCCATGGCCGTTTTTCT 59.033 52.632 33.44 0.00 41.09 2.52
2369 2981 1.737735 GCTGCCATGGCCGTTTTTC 60.738 57.895 33.44 10.47 41.09 2.29
2370 2982 2.209315 AGCTGCCATGGCCGTTTTT 61.209 52.632 33.44 11.82 41.09 1.94
2371 2983 2.601367 AGCTGCCATGGCCGTTTT 60.601 55.556 33.44 14.25 41.09 2.43
2372 2984 3.376078 CAGCTGCCATGGCCGTTT 61.376 61.111 33.44 16.71 41.09 3.60
2373 2985 4.666253 ACAGCTGCCATGGCCGTT 62.666 61.111 33.44 22.80 41.09 4.44
2374 2986 4.666253 AACAGCTGCCATGGCCGT 62.666 61.111 33.44 21.29 41.09 5.68
2375 2987 4.124351 CAACAGCTGCCATGGCCG 62.124 66.667 33.44 28.00 41.09 6.13
2376 2988 3.766691 CCAACAGCTGCCATGGCC 61.767 66.667 33.44 19.25 41.09 5.36
2377 2989 3.766691 CCCAACAGCTGCCATGGC 61.767 66.667 30.54 30.54 42.35 4.40
2378 2990 3.072468 CCCCAACAGCTGCCATGG 61.072 66.667 21.13 21.13 0.00 3.66
2379 2991 2.036098 TCCCCAACAGCTGCCATG 59.964 61.111 15.27 10.65 0.00 3.66
2380 2992 2.357836 CTCCCCAACAGCTGCCAT 59.642 61.111 15.27 0.00 0.00 4.40
2381 2993 4.666253 GCTCCCCAACAGCTGCCA 62.666 66.667 15.27 0.00 33.75 4.92
2383 2995 3.605749 TACGCTCCCCAACAGCTGC 62.606 63.158 15.27 0.00 34.45 5.25
2384 2996 1.448540 CTACGCTCCCCAACAGCTG 60.449 63.158 13.48 13.48 34.45 4.24
2385 2997 0.613853 TACTACGCTCCCCAACAGCT 60.614 55.000 0.00 0.00 34.45 4.24
2441 3055 1.672363 CGTTGCTATGCATCACCATGT 59.328 47.619 0.19 0.00 38.76 3.21
2849 3469 3.606662 GGCGCGCATAGAGAGGGA 61.607 66.667 34.42 0.00 31.56 4.20
2918 3540 3.196685 CCTTTCCTTGACTCCTACTCCTG 59.803 52.174 0.00 0.00 0.00 3.86
2942 3566 3.954258 CCTCCTTCCTTCTCTTCTCTCTC 59.046 52.174 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.