Multiple sequence alignment - TraesCS2D01G493800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G493800 chr2D 100.000 2825 0 0 1 2825 591177088 591179912 0.000000e+00 5217.0
1 TraesCS2D01G493800 chr2D 85.666 893 79 14 1043 1906 591121544 591122416 0.000000e+00 894.0
2 TraesCS2D01G493800 chr2D 83.447 882 101 17 1955 2825 591123011 591123858 0.000000e+00 778.0
3 TraesCS2D01G493800 chr2D 87.763 523 46 10 1100 1610 591276016 591276532 1.870000e-166 595.0
4 TraesCS2D01G493800 chr2D 82.239 259 25 12 1274 1523 591388841 591389087 1.330000e-48 204.0
5 TraesCS2D01G493800 chr2D 97.872 47 1 0 1 47 76884674 76884628 6.490000e-12 82.4
6 TraesCS2D01G493800 chr2B 87.921 1159 79 33 723 1845 716977594 716978727 0.000000e+00 1308.0
7 TraesCS2D01G493800 chr2B 80.097 1030 137 42 708 1712 717009672 717010658 0.000000e+00 704.0
8 TraesCS2D01G493800 chr2B 82.750 800 87 20 2031 2825 716994594 716995347 0.000000e+00 665.0
9 TraesCS2D01G493800 chr2A 86.358 821 66 22 749 1550 726085440 726086233 0.000000e+00 854.0
10 TraesCS2D01G493800 chr2A 86.352 762 70 13 1068 1811 726100288 726101033 0.000000e+00 800.0
11 TraesCS2D01G493800 chr2A 81.187 893 101 40 838 1712 726159157 726160000 0.000000e+00 656.0
12 TraesCS2D01G493800 chr2A 91.071 448 39 1 3 450 104783405 104783851 3.110000e-169 604.0
13 TraesCS2D01G493800 chr2A 84.910 391 44 12 651 1028 726099896 726100284 5.710000e-102 381.0
14 TraesCS2D01G493800 chr2A 91.912 272 19 3 780 1049 726121050 726121320 7.390000e-101 377.0
15 TraesCS2D01G493800 chr2A 80.229 349 49 4 2481 2825 726086723 726087055 7.820000e-61 244.0
16 TraesCS2D01G493800 chr2A 88.957 163 13 5 1274 1432 726296088 726296249 2.220000e-46 196.0
17 TraesCS2D01G493800 chr1D 93.933 445 27 0 1 445 326523080 326523524 0.000000e+00 673.0
18 TraesCS2D01G493800 chr1D 92.891 422 28 2 30 450 254594 255014 1.860000e-171 612.0
19 TraesCS2D01G493800 chr1D 74.882 211 44 5 2124 2332 435811089 435810886 1.390000e-13 87.9
20 TraesCS2D01G493800 chr5D 92.809 445 26 1 1 445 190378250 190378688 8.530000e-180 640.0
21 TraesCS2D01G493800 chr7D 93.602 422 25 2 30 450 592380365 592380785 1.850000e-176 628.0
22 TraesCS2D01G493800 chr7D 81.061 132 14 11 2111 2237 10928201 10928326 8.330000e-16 95.3
23 TraesCS2D01G493800 chr7D 95.833 48 1 1 1 47 627198121 627198074 3.020000e-10 76.8
24 TraesCS2D01G493800 chr3D 93.365 422 26 2 30 450 513100605 513101025 8.590000e-175 623.0
25 TraesCS2D01G493800 chr3D 92.891 422 28 2 30 450 530892497 530892917 1.860000e-171 612.0
26 TraesCS2D01G493800 chr6D 93.525 417 25 2 30 445 401170073 401170488 1.110000e-173 619.0
27 TraesCS2D01G493800 chr7A 92.220 437 29 5 30 464 689306244 689306677 5.170000e-172 614.0
28 TraesCS2D01G493800 chr5B 77.316 313 53 14 2110 2410 702208826 702208520 4.840000e-38 169.0
29 TraesCS2D01G493800 chr5B 77.097 310 54 13 2110 2410 702154796 702154495 2.250000e-36 163.0
30 TraesCS2D01G493800 chr5B 76.923 312 55 13 2110 2409 702129475 702129169 8.100000e-36 161.0
31 TraesCS2D01G493800 chr5B 76.923 312 52 15 2110 2410 702195215 702194913 2.910000e-35 159.0
32 TraesCS2D01G493800 chr5B 75.478 314 58 14 2110 2410 702181758 702181451 4.910000e-28 135.0
33 TraesCS2D01G493800 chr1A 77.406 239 46 8 2181 2416 533153092 533152859 4.910000e-28 135.0
34 TraesCS2D01G493800 chr1A 79.528 127 14 6 2110 2234 460642576 460642460 2.330000e-11 80.5
35 TraesCS2D01G493800 chr4D 77.889 199 33 7 2204 2393 58401865 58402061 2.300000e-21 113.0
36 TraesCS2D01G493800 chr4A 78.912 147 24 4 2274 2414 632636213 632636068 3.000000e-15 93.5
37 TraesCS2D01G493800 chr7B 97.872 47 1 0 1 47 205350102 205350148 6.490000e-12 82.4
38 TraesCS2D01G493800 chr1B 94.595 37 2 0 2109 2145 288797861 288797825 1.090000e-04 58.4
39 TraesCS2D01G493800 chr1B 94.444 36 2 0 2110 2145 288798429 288798394 3.930000e-04 56.5
40 TraesCS2D01G493800 chr5A 100.000 29 0 0 1 29 500884870 500884842 1.000000e-03 54.7
41 TraesCS2D01G493800 chr3B 85.455 55 5 3 2111 2162 696674530 696674584 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G493800 chr2D 591177088 591179912 2824 False 5217.0 5217 100.0000 1 2825 1 chr2D.!!$F1 2824
1 TraesCS2D01G493800 chr2D 591121544 591123858 2314 False 836.0 894 84.5565 1043 2825 2 chr2D.!!$F4 1782
2 TraesCS2D01G493800 chr2D 591276016 591276532 516 False 595.0 595 87.7630 1100 1610 1 chr2D.!!$F2 510
3 TraesCS2D01G493800 chr2B 716977594 716978727 1133 False 1308.0 1308 87.9210 723 1845 1 chr2B.!!$F1 1122
4 TraesCS2D01G493800 chr2B 717009672 717010658 986 False 704.0 704 80.0970 708 1712 1 chr2B.!!$F3 1004
5 TraesCS2D01G493800 chr2B 716994594 716995347 753 False 665.0 665 82.7500 2031 2825 1 chr2B.!!$F2 794
6 TraesCS2D01G493800 chr2A 726159157 726160000 843 False 656.0 656 81.1870 838 1712 1 chr2A.!!$F3 874
7 TraesCS2D01G493800 chr2A 726099896 726101033 1137 False 590.5 800 85.6310 651 1811 2 chr2A.!!$F6 1160
8 TraesCS2D01G493800 chr2A 726085440 726087055 1615 False 549.0 854 83.2935 749 2825 2 chr2A.!!$F5 2076

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
392 393 0.03101 GGGGTAGTGAGAGGATGGGT 60.031 60.0 0.0 0.0 0.0 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 2622 0.109342 CCTCCTCAGCCACTGTGTTT 59.891 55.0 7.08 0.0 32.61 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.950208 GGTCAAGCTACTTATTCAAGAAGTAT 57.050 34.615 5.10 0.00 38.41 2.12
26 27 9.384764 GGTCAAGCTACTTATTCAAGAAGTATT 57.615 33.333 5.10 0.00 38.41 1.89
32 33 9.819267 GCTACTTATTCAAGAAGTATTAGTGGT 57.181 33.333 5.10 0.00 38.41 4.16
130 131 9.835389 ATTCCAGTTCTTTTGAATTTTGATCAA 57.165 25.926 3.38 3.38 40.94 2.57
131 132 9.664332 TTCCAGTTCTTTTGAATTTTGATCAAA 57.336 25.926 16.91 16.91 43.12 2.69
132 133 9.835389 TCCAGTTCTTTTGAATTTTGATCAAAT 57.165 25.926 21.10 7.85 43.94 2.32
137 138 9.835389 TTCTTTTGAATTTTGATCAAATCTGGT 57.165 25.926 21.10 5.64 43.94 4.00
138 139 9.480053 TCTTTTGAATTTTGATCAAATCTGGTC 57.520 29.630 21.10 13.65 43.94 4.02
139 140 9.263538 CTTTTGAATTTTGATCAAATCTGGTCA 57.736 29.630 21.10 15.66 43.94 4.02
146 147 5.694231 TGATCAAATCTGGTCAAACTGTG 57.306 39.130 0.00 0.00 39.82 3.66
147 148 4.520111 TGATCAAATCTGGTCAAACTGTGG 59.480 41.667 0.00 0.00 39.82 4.17
148 149 3.897239 TCAAATCTGGTCAAACTGTGGT 58.103 40.909 0.00 0.00 0.00 4.16
149 150 3.882888 TCAAATCTGGTCAAACTGTGGTC 59.117 43.478 0.00 0.00 0.00 4.02
150 151 3.576078 AATCTGGTCAAACTGTGGTCA 57.424 42.857 0.00 0.00 0.00 4.02
151 152 3.576078 ATCTGGTCAAACTGTGGTCAA 57.424 42.857 0.00 0.00 0.00 3.18
152 153 3.358111 TCTGGTCAAACTGTGGTCAAA 57.642 42.857 0.00 0.00 0.00 2.69
153 154 3.013921 TCTGGTCAAACTGTGGTCAAAC 58.986 45.455 0.00 0.00 0.00 2.93
154 155 3.016736 CTGGTCAAACTGTGGTCAAACT 58.983 45.455 0.00 0.00 0.00 2.66
155 156 4.080807 TCTGGTCAAACTGTGGTCAAACTA 60.081 41.667 0.00 0.00 0.00 2.24
156 157 4.787551 TGGTCAAACTGTGGTCAAACTAT 58.212 39.130 0.00 0.00 0.00 2.12
157 158 5.931294 TGGTCAAACTGTGGTCAAACTATA 58.069 37.500 0.00 0.00 0.00 1.31
158 159 5.995282 TGGTCAAACTGTGGTCAAACTATAG 59.005 40.000 0.00 0.00 0.00 1.31
159 160 5.995897 GGTCAAACTGTGGTCAAACTATAGT 59.004 40.000 0.00 0.00 32.82 2.12
160 161 6.147328 GGTCAAACTGTGGTCAAACTATAGTC 59.853 42.308 5.70 0.00 30.39 2.59
161 162 6.147328 GTCAAACTGTGGTCAAACTATAGTCC 59.853 42.308 5.70 3.61 30.39 3.85
162 163 5.818678 AACTGTGGTCAAACTATAGTCCA 57.181 39.130 5.70 6.40 30.39 4.02
163 164 5.818678 ACTGTGGTCAAACTATAGTCCAA 57.181 39.130 11.53 3.91 25.13 3.53
164 165 5.548406 ACTGTGGTCAAACTATAGTCCAAC 58.452 41.667 11.53 7.51 25.13 3.77
165 166 5.307196 ACTGTGGTCAAACTATAGTCCAACT 59.693 40.000 11.53 0.00 25.13 3.16
166 167 6.495872 ACTGTGGTCAAACTATAGTCCAACTA 59.504 38.462 11.53 3.76 34.82 2.24
167 168 7.015877 ACTGTGGTCAAACTATAGTCCAACTAA 59.984 37.037 11.53 0.57 33.89 2.24
168 169 7.913789 TGTGGTCAAACTATAGTCCAACTAAT 58.086 34.615 11.53 0.00 33.89 1.73
169 170 8.380099 TGTGGTCAAACTATAGTCCAACTAATT 58.620 33.333 11.53 0.00 33.89 1.40
170 171 9.880157 GTGGTCAAACTATAGTCCAACTAATTA 57.120 33.333 11.53 0.00 33.89 1.40
242 243 8.911247 ATAGTTTCAAACTCAAACAGTGAAAC 57.089 30.769 5.92 16.07 42.80 2.78
243 244 5.856455 AGTTTCAAACTCAAACAGTGAAACG 59.144 36.000 17.19 0.00 44.91 3.60
244 245 5.365403 TTCAAACTCAAACAGTGAAACGT 57.635 34.783 0.00 0.00 45.86 3.99
245 246 4.717991 TCAAACTCAAACAGTGAAACGTG 58.282 39.130 0.00 0.00 45.86 4.49
246 247 4.214545 TCAAACTCAAACAGTGAAACGTGT 59.785 37.500 0.00 0.00 45.86 4.49
247 248 3.740044 ACTCAAACAGTGAAACGTGTG 57.260 42.857 0.00 0.00 45.86 3.82
248 249 3.331150 ACTCAAACAGTGAAACGTGTGA 58.669 40.909 0.00 0.00 45.86 3.58
249 250 3.124636 ACTCAAACAGTGAAACGTGTGAC 59.875 43.478 0.00 0.00 45.86 3.67
250 251 3.331150 TCAAACAGTGAAACGTGTGACT 58.669 40.909 0.00 0.00 45.86 3.41
251 252 3.749088 TCAAACAGTGAAACGTGTGACTT 59.251 39.130 0.00 0.00 45.86 3.01
252 253 4.088648 CAAACAGTGAAACGTGTGACTTC 58.911 43.478 0.00 0.00 45.86 3.01
253 254 2.967362 ACAGTGAAACGTGTGACTTCA 58.033 42.857 0.00 0.00 45.86 3.02
254 255 3.531538 ACAGTGAAACGTGTGACTTCAT 58.468 40.909 0.00 0.00 45.86 2.57
255 256 4.689071 ACAGTGAAACGTGTGACTTCATA 58.311 39.130 0.00 0.00 45.86 2.15
256 257 4.506654 ACAGTGAAACGTGTGACTTCATAC 59.493 41.667 0.00 0.00 45.86 2.39
257 258 4.745125 CAGTGAAACGTGTGACTTCATACT 59.255 41.667 0.00 0.00 45.86 2.12
258 259 4.982916 AGTGAAACGTGTGACTTCATACTC 59.017 41.667 0.00 0.00 45.86 2.59
259 260 4.743151 GTGAAACGTGTGACTTCATACTCA 59.257 41.667 3.16 0.00 36.07 3.41
260 261 5.233476 GTGAAACGTGTGACTTCATACTCAA 59.767 40.000 3.16 0.00 36.07 3.02
261 262 5.462068 TGAAACGTGTGACTTCATACTCAAG 59.538 40.000 4.82 0.00 36.07 3.02
262 263 3.318017 ACGTGTGACTTCATACTCAAGC 58.682 45.455 4.82 0.00 36.07 4.01
263 264 3.005897 ACGTGTGACTTCATACTCAAGCT 59.994 43.478 4.82 0.00 36.07 3.74
264 265 4.217767 ACGTGTGACTTCATACTCAAGCTA 59.782 41.667 4.82 0.00 36.07 3.32
265 266 5.161358 CGTGTGACTTCATACTCAAGCTAA 58.839 41.667 4.82 0.00 36.07 3.09
266 267 5.633601 CGTGTGACTTCATACTCAAGCTAAA 59.366 40.000 4.82 0.00 36.07 1.85
267 268 6.400091 CGTGTGACTTCATACTCAAGCTAAAC 60.400 42.308 4.82 0.00 36.07 2.01
268 269 6.647067 GTGTGACTTCATACTCAAGCTAAACT 59.353 38.462 0.00 0.00 35.46 2.66
269 270 6.868864 TGTGACTTCATACTCAAGCTAAACTC 59.131 38.462 0.00 0.00 0.00 3.01
270 271 6.311690 GTGACTTCATACTCAAGCTAAACTCC 59.688 42.308 0.00 0.00 0.00 3.85
271 272 6.211584 TGACTTCATACTCAAGCTAAACTCCT 59.788 38.462 0.00 0.00 0.00 3.69
272 273 6.402222 ACTTCATACTCAAGCTAAACTCCTG 58.598 40.000 0.00 0.00 0.00 3.86
273 274 6.211584 ACTTCATACTCAAGCTAAACTCCTGA 59.788 38.462 0.00 0.00 0.00 3.86
274 275 6.214191 TCATACTCAAGCTAAACTCCTGAG 57.786 41.667 7.60 7.60 0.00 3.35
275 276 3.971245 ACTCAAGCTAAACTCCTGAGG 57.029 47.619 12.64 0.00 0.00 3.86
276 277 2.569404 ACTCAAGCTAAACTCCTGAGGG 59.431 50.000 12.64 0.00 0.00 4.30
277 278 2.569404 CTCAAGCTAAACTCCTGAGGGT 59.431 50.000 0.00 0.00 0.00 4.34
278 279 2.979678 TCAAGCTAAACTCCTGAGGGTT 59.020 45.455 0.00 0.00 0.00 4.11
279 280 4.164981 TCAAGCTAAACTCCTGAGGGTTA 58.835 43.478 0.00 0.00 0.00 2.85
280 281 4.595781 TCAAGCTAAACTCCTGAGGGTTAA 59.404 41.667 0.00 0.00 0.00 2.01
281 282 5.250774 TCAAGCTAAACTCCTGAGGGTTAAT 59.749 40.000 0.00 0.00 0.00 1.40
282 283 6.442564 TCAAGCTAAACTCCTGAGGGTTAATA 59.557 38.462 0.00 0.00 0.00 0.98
283 284 6.487299 AGCTAAACTCCTGAGGGTTAATAG 57.513 41.667 0.00 3.45 0.00 1.73
284 285 5.367060 AGCTAAACTCCTGAGGGTTAATAGG 59.633 44.000 0.00 0.00 0.00 2.57
285 286 5.365895 GCTAAACTCCTGAGGGTTAATAGGA 59.634 44.000 0.00 0.00 37.72 2.94
286 287 6.043358 GCTAAACTCCTGAGGGTTAATAGGAT 59.957 42.308 0.00 0.00 38.56 3.24
287 288 6.910259 AAACTCCTGAGGGTTAATAGGATT 57.090 37.500 0.00 0.00 38.56 3.01
288 289 5.896073 ACTCCTGAGGGTTAATAGGATTG 57.104 43.478 0.00 0.00 38.56 2.67
289 290 5.538877 ACTCCTGAGGGTTAATAGGATTGA 58.461 41.667 0.00 0.00 38.56 2.57
290 291 5.367060 ACTCCTGAGGGTTAATAGGATTGAC 59.633 44.000 0.00 0.00 38.56 3.18
291 292 5.285401 TCCTGAGGGTTAATAGGATTGACA 58.715 41.667 0.00 0.00 34.54 3.58
292 293 5.911178 TCCTGAGGGTTAATAGGATTGACAT 59.089 40.000 0.00 0.00 34.54 3.06
293 294 6.043243 TCCTGAGGGTTAATAGGATTGACATC 59.957 42.308 0.00 0.00 34.54 3.06
294 295 6.043706 CCTGAGGGTTAATAGGATTGACATCT 59.956 42.308 0.00 0.00 31.91 2.90
295 296 7.420680 CCTGAGGGTTAATAGGATTGACATCTT 60.421 40.741 0.00 0.00 31.91 2.40
296 297 8.561536 TGAGGGTTAATAGGATTGACATCTTA 57.438 34.615 0.00 0.00 0.00 2.10
297 298 8.429641 TGAGGGTTAATAGGATTGACATCTTAC 58.570 37.037 0.00 0.00 0.00 2.34
298 299 8.568617 AGGGTTAATAGGATTGACATCTTACT 57.431 34.615 0.00 0.00 0.00 2.24
299 300 9.670442 AGGGTTAATAGGATTGACATCTTACTA 57.330 33.333 0.00 0.00 0.00 1.82
312 313 8.547967 TGACATCTTACTATTGTCAGGAAAAC 57.452 34.615 1.11 0.00 43.44 2.43
313 314 8.154203 TGACATCTTACTATTGTCAGGAAAACA 58.846 33.333 1.11 0.00 43.44 2.83
314 315 8.918202 ACATCTTACTATTGTCAGGAAAACAA 57.082 30.769 0.00 0.00 40.63 2.83
315 316 8.784043 ACATCTTACTATTGTCAGGAAAACAAC 58.216 33.333 0.00 0.00 39.29 3.32
316 317 8.783093 CATCTTACTATTGTCAGGAAAACAACA 58.217 33.333 0.00 0.00 39.29 3.33
317 318 8.740123 TCTTACTATTGTCAGGAAAACAACAA 57.260 30.769 0.00 0.00 39.29 2.83
318 319 8.836413 TCTTACTATTGTCAGGAAAACAACAAG 58.164 33.333 0.00 0.00 39.29 3.16
319 320 8.514330 TTACTATTGTCAGGAAAACAACAAGT 57.486 30.769 9.43 9.43 39.29 3.16
320 321 9.616156 TTACTATTGTCAGGAAAACAACAAGTA 57.384 29.630 8.07 8.07 39.29 2.24
321 322 7.927048 ACTATTGTCAGGAAAACAACAAGTAC 58.073 34.615 0.00 0.00 39.29 2.73
322 323 6.767524 ATTGTCAGGAAAACAACAAGTACA 57.232 33.333 0.00 0.00 39.29 2.90
323 324 5.811399 TGTCAGGAAAACAACAAGTACAG 57.189 39.130 0.00 0.00 0.00 2.74
324 325 5.492895 TGTCAGGAAAACAACAAGTACAGA 58.507 37.500 0.00 0.00 0.00 3.41
325 326 5.353123 TGTCAGGAAAACAACAAGTACAGAC 59.647 40.000 0.00 0.00 0.00 3.51
326 327 5.585047 GTCAGGAAAACAACAAGTACAGACT 59.415 40.000 0.00 0.00 37.59 3.24
337 338 3.662247 AGTACAGACTTGGAAACGAGG 57.338 47.619 0.00 0.00 46.96 4.63
338 339 2.299297 AGTACAGACTTGGAAACGAGGG 59.701 50.000 0.00 0.00 46.96 4.30
339 340 0.396811 ACAGACTTGGAAACGAGGGG 59.603 55.000 0.00 0.00 46.96 4.79
340 341 0.321653 CAGACTTGGAAACGAGGGGG 60.322 60.000 0.00 0.00 46.96 5.40
360 361 4.069300 GGGATAGAACCCGGAAGTTAAG 57.931 50.000 0.73 0.00 40.49 1.85
361 362 3.464907 GGATAGAACCCGGAAGTTAAGC 58.535 50.000 0.73 0.00 0.00 3.09
362 363 2.660189 TAGAACCCGGAAGTTAAGCG 57.340 50.000 0.73 0.00 0.00 4.68
363 364 0.683412 AGAACCCGGAAGTTAAGCGT 59.317 50.000 0.73 0.00 0.00 5.07
364 365 0.794473 GAACCCGGAAGTTAAGCGTG 59.206 55.000 0.73 0.00 0.00 5.34
365 366 0.107268 AACCCGGAAGTTAAGCGTGT 59.893 50.000 0.73 0.00 0.00 4.49
366 367 0.107268 ACCCGGAAGTTAAGCGTGTT 59.893 50.000 0.73 0.00 0.00 3.32
367 368 0.794473 CCCGGAAGTTAAGCGTGTTC 59.206 55.000 0.73 0.00 0.00 3.18
368 369 1.504359 CCGGAAGTTAAGCGTGTTCA 58.496 50.000 0.00 0.00 0.00 3.18
369 370 1.459592 CCGGAAGTTAAGCGTGTTCAG 59.540 52.381 0.00 0.00 0.00 3.02
370 371 1.459592 CGGAAGTTAAGCGTGTTCAGG 59.540 52.381 0.00 0.00 0.00 3.86
371 372 2.490991 GGAAGTTAAGCGTGTTCAGGT 58.509 47.619 0.00 0.00 0.00 4.00
372 373 2.876550 GGAAGTTAAGCGTGTTCAGGTT 59.123 45.455 0.00 0.00 0.00 3.50
373 374 3.303791 GGAAGTTAAGCGTGTTCAGGTTG 60.304 47.826 0.00 0.00 0.00 3.77
374 375 2.218603 AGTTAAGCGTGTTCAGGTTGG 58.781 47.619 0.00 0.00 0.00 3.77
375 376 1.265905 GTTAAGCGTGTTCAGGTTGGG 59.734 52.381 0.00 0.00 0.00 4.12
376 377 0.250553 TAAGCGTGTTCAGGTTGGGG 60.251 55.000 0.00 0.00 0.00 4.96
377 378 2.203294 GCGTGTTCAGGTTGGGGT 60.203 61.111 0.00 0.00 0.00 4.95
378 379 1.071814 GCGTGTTCAGGTTGGGGTA 59.928 57.895 0.00 0.00 0.00 3.69
379 380 0.953960 GCGTGTTCAGGTTGGGGTAG 60.954 60.000 0.00 0.00 0.00 3.18
380 381 0.395312 CGTGTTCAGGTTGGGGTAGT 59.605 55.000 0.00 0.00 0.00 2.73
381 382 1.876416 CGTGTTCAGGTTGGGGTAGTG 60.876 57.143 0.00 0.00 0.00 2.74
382 383 1.418637 GTGTTCAGGTTGGGGTAGTGA 59.581 52.381 0.00 0.00 0.00 3.41
383 384 1.697432 TGTTCAGGTTGGGGTAGTGAG 59.303 52.381 0.00 0.00 0.00 3.51
384 385 1.975680 GTTCAGGTTGGGGTAGTGAGA 59.024 52.381 0.00 0.00 0.00 3.27
385 386 1.938585 TCAGGTTGGGGTAGTGAGAG 58.061 55.000 0.00 0.00 0.00 3.20
386 387 0.905357 CAGGTTGGGGTAGTGAGAGG 59.095 60.000 0.00 0.00 0.00 3.69
387 388 0.790993 AGGTTGGGGTAGTGAGAGGA 59.209 55.000 0.00 0.00 0.00 3.71
388 389 1.366435 AGGTTGGGGTAGTGAGAGGAT 59.634 52.381 0.00 0.00 0.00 3.24
389 390 1.486726 GGTTGGGGTAGTGAGAGGATG 59.513 57.143 0.00 0.00 0.00 3.51
390 391 1.486726 GTTGGGGTAGTGAGAGGATGG 59.513 57.143 0.00 0.00 0.00 3.51
391 392 0.031111 TGGGGTAGTGAGAGGATGGG 60.031 60.000 0.00 0.00 0.00 4.00
392 393 0.031010 GGGGTAGTGAGAGGATGGGT 60.031 60.000 0.00 0.00 0.00 4.51
393 394 1.123928 GGGTAGTGAGAGGATGGGTG 58.876 60.000 0.00 0.00 0.00 4.61
394 395 1.343075 GGGTAGTGAGAGGATGGGTGA 60.343 57.143 0.00 0.00 0.00 4.02
395 396 1.757699 GGTAGTGAGAGGATGGGTGAC 59.242 57.143 0.00 0.00 0.00 3.67
406 407 4.078516 GGGTGACCGTCCGGGAAG 62.079 72.222 10.91 0.00 43.64 3.46
407 408 3.308705 GGTGACCGTCCGGGAAGT 61.309 66.667 10.91 4.99 39.97 3.01
408 409 2.739132 GTGACCGTCCGGGAAGTT 59.261 61.111 10.91 0.00 39.97 2.66
409 410 1.535204 GGTGACCGTCCGGGAAGTTA 61.535 60.000 10.91 0.00 39.97 2.24
410 411 0.108945 GTGACCGTCCGGGAAGTTAG 60.109 60.000 10.91 0.00 39.97 2.34
411 412 0.251297 TGACCGTCCGGGAAGTTAGA 60.251 55.000 10.91 0.00 39.97 2.10
412 413 1.109609 GACCGTCCGGGAAGTTAGAT 58.890 55.000 10.91 0.00 39.97 1.98
413 414 0.822164 ACCGTCCGGGAAGTTAGATG 59.178 55.000 10.91 0.00 39.97 2.90
414 415 1.108776 CCGTCCGGGAAGTTAGATGA 58.891 55.000 0.00 0.00 38.47 2.92
415 416 1.687123 CCGTCCGGGAAGTTAGATGAT 59.313 52.381 0.00 0.00 38.47 2.45
416 417 2.102588 CCGTCCGGGAAGTTAGATGATT 59.897 50.000 0.00 0.00 38.47 2.57
417 418 3.431766 CCGTCCGGGAAGTTAGATGATTT 60.432 47.826 0.00 0.00 38.47 2.17
418 419 3.555956 CGTCCGGGAAGTTAGATGATTTG 59.444 47.826 0.00 0.00 0.00 2.32
419 420 4.679639 CGTCCGGGAAGTTAGATGATTTGA 60.680 45.833 0.00 0.00 0.00 2.69
420 421 5.183228 GTCCGGGAAGTTAGATGATTTGAA 58.817 41.667 0.00 0.00 0.00 2.69
421 422 5.646360 GTCCGGGAAGTTAGATGATTTGAAA 59.354 40.000 0.00 0.00 0.00 2.69
422 423 6.318900 GTCCGGGAAGTTAGATGATTTGAAAT 59.681 38.462 0.00 0.00 0.00 2.17
423 424 6.318648 TCCGGGAAGTTAGATGATTTGAAATG 59.681 38.462 0.00 0.00 0.00 2.32
424 425 6.318648 CCGGGAAGTTAGATGATTTGAAATGA 59.681 38.462 0.00 0.00 0.00 2.57
425 426 7.013655 CCGGGAAGTTAGATGATTTGAAATGAT 59.986 37.037 0.00 0.00 0.00 2.45
426 427 7.859377 CGGGAAGTTAGATGATTTGAAATGATG 59.141 37.037 0.00 0.00 0.00 3.07
427 428 8.906867 GGGAAGTTAGATGATTTGAAATGATGA 58.093 33.333 0.00 0.00 0.00 2.92
428 429 9.947669 GGAAGTTAGATGATTTGAAATGATGAG 57.052 33.333 0.00 0.00 0.00 2.90
429 430 9.947669 GAAGTTAGATGATTTGAAATGATGAGG 57.052 33.333 0.00 0.00 0.00 3.86
430 431 8.461249 AGTTAGATGATTTGAAATGATGAGGG 57.539 34.615 0.00 0.00 0.00 4.30
431 432 8.057623 AGTTAGATGATTTGAAATGATGAGGGT 58.942 33.333 0.00 0.00 0.00 4.34
432 433 8.689972 GTTAGATGATTTGAAATGATGAGGGTT 58.310 33.333 0.00 0.00 0.00 4.11
433 434 7.108841 AGATGATTTGAAATGATGAGGGTTG 57.891 36.000 0.00 0.00 0.00 3.77
434 435 6.893554 AGATGATTTGAAATGATGAGGGTTGA 59.106 34.615 0.00 0.00 0.00 3.18
435 436 7.563924 AGATGATTTGAAATGATGAGGGTTGAT 59.436 33.333 0.00 0.00 0.00 2.57
436 437 7.484993 TGATTTGAAATGATGAGGGTTGATT 57.515 32.000 0.00 0.00 0.00 2.57
437 438 8.592529 TGATTTGAAATGATGAGGGTTGATTA 57.407 30.769 0.00 0.00 0.00 1.75
438 439 9.033711 TGATTTGAAATGATGAGGGTTGATTAA 57.966 29.630 0.00 0.00 0.00 1.40
439 440 9.874205 GATTTGAAATGATGAGGGTTGATTAAA 57.126 29.630 0.00 0.00 0.00 1.52
440 441 9.880157 ATTTGAAATGATGAGGGTTGATTAAAG 57.120 29.630 0.00 0.00 0.00 1.85
441 442 8.648698 TTGAAATGATGAGGGTTGATTAAAGA 57.351 30.769 0.00 0.00 0.00 2.52
442 443 8.827832 TGAAATGATGAGGGTTGATTAAAGAT 57.172 30.769 0.00 0.00 0.00 2.40
443 444 9.258629 TGAAATGATGAGGGTTGATTAAAGATT 57.741 29.630 0.00 0.00 0.00 2.40
497 498 8.478775 AAAAGACAAATAGCCCTTTTTCTACT 57.521 30.769 0.00 0.00 35.93 2.57
498 499 7.454260 AAGACAAATAGCCCTTTTTCTACTG 57.546 36.000 0.00 0.00 0.00 2.74
499 500 5.946377 AGACAAATAGCCCTTTTTCTACTGG 59.054 40.000 0.00 0.00 0.00 4.00
500 501 5.641155 ACAAATAGCCCTTTTTCTACTGGT 58.359 37.500 0.00 0.00 0.00 4.00
501 502 5.476945 ACAAATAGCCCTTTTTCTACTGGTG 59.523 40.000 0.00 0.00 0.00 4.17
502 503 4.929146 ATAGCCCTTTTTCTACTGGTGT 57.071 40.909 0.00 0.00 0.00 4.16
503 504 3.141767 AGCCCTTTTTCTACTGGTGTC 57.858 47.619 0.00 0.00 0.00 3.67
504 505 2.441750 AGCCCTTTTTCTACTGGTGTCA 59.558 45.455 0.00 0.00 0.00 3.58
505 506 3.074538 AGCCCTTTTTCTACTGGTGTCAT 59.925 43.478 0.00 0.00 0.00 3.06
506 507 3.191371 GCCCTTTTTCTACTGGTGTCATG 59.809 47.826 0.00 0.00 0.00 3.07
507 508 4.398319 CCCTTTTTCTACTGGTGTCATGT 58.602 43.478 0.00 0.00 0.00 3.21
508 509 5.556915 CCCTTTTTCTACTGGTGTCATGTA 58.443 41.667 0.00 0.00 0.00 2.29
509 510 6.001460 CCCTTTTTCTACTGGTGTCATGTAA 58.999 40.000 0.00 0.00 0.00 2.41
510 511 6.149474 CCCTTTTTCTACTGGTGTCATGTAAG 59.851 42.308 0.00 0.00 0.00 2.34
511 512 6.149474 CCTTTTTCTACTGGTGTCATGTAAGG 59.851 42.308 0.00 0.00 0.00 2.69
512 513 3.887621 TCTACTGGTGTCATGTAAGGC 57.112 47.619 0.00 0.00 0.00 4.35
513 514 3.441101 TCTACTGGTGTCATGTAAGGCT 58.559 45.455 0.00 0.00 0.00 4.58
514 515 3.838317 TCTACTGGTGTCATGTAAGGCTT 59.162 43.478 4.58 4.58 0.00 4.35
515 516 2.783135 ACTGGTGTCATGTAAGGCTTG 58.217 47.619 10.69 0.00 0.00 4.01
516 517 2.371841 ACTGGTGTCATGTAAGGCTTGA 59.628 45.455 10.69 0.00 0.00 3.02
517 518 2.744202 CTGGTGTCATGTAAGGCTTGAC 59.256 50.000 10.69 10.04 46.41 3.18
522 523 4.522297 GTCATGTAAGGCTTGACGATTC 57.478 45.455 10.69 0.00 40.71 2.52
523 524 3.000322 GTCATGTAAGGCTTGACGATTCG 60.000 47.826 10.69 4.14 40.71 3.34
524 525 2.004583 TGTAAGGCTTGACGATTCGG 57.995 50.000 10.69 0.00 0.00 4.30
525 526 1.287425 GTAAGGCTTGACGATTCGGG 58.713 55.000 10.69 0.00 0.00 5.14
526 527 0.461339 TAAGGCTTGACGATTCGGGC 60.461 55.000 10.69 8.67 0.00 6.13
527 528 2.125106 GGCTTGACGATTCGGGCT 60.125 61.111 11.29 0.00 0.00 5.19
528 529 2.174319 GGCTTGACGATTCGGGCTC 61.174 63.158 11.29 0.00 0.00 4.70
529 530 2.517450 GCTTGACGATTCGGGCTCG 61.517 63.158 11.29 0.00 41.77 5.03
530 531 2.508439 TTGACGATTCGGGCTCGC 60.508 61.111 11.29 0.00 39.71 5.03
531 532 2.890847 CTTGACGATTCGGGCTCGCT 62.891 60.000 11.29 0.00 39.71 4.93
532 533 2.655685 GACGATTCGGGCTCGCTC 60.656 66.667 11.29 0.00 39.71 5.03
533 534 4.554363 ACGATTCGGGCTCGCTCG 62.554 66.667 23.39 23.39 42.53 5.03
534 535 4.554363 CGATTCGGGCTCGCTCGT 62.554 66.667 18.79 0.00 41.31 4.18
535 536 2.956964 GATTCGGGCTCGCTCGTG 60.957 66.667 11.27 0.00 41.31 4.35
536 537 4.514577 ATTCGGGCTCGCTCGTGG 62.515 66.667 11.27 0.00 41.31 4.94
542 543 4.778415 GCTCGCTCGTGGCTTCGA 62.778 66.667 5.44 5.44 39.13 3.71
543 544 2.876645 CTCGCTCGTGGCTTCGAC 60.877 66.667 0.00 0.35 39.13 4.20
544 545 4.753877 TCGCTCGTGGCTTCGACG 62.754 66.667 14.77 14.77 39.13 5.12
546 547 2.733593 GCTCGTGGCTTCGACGTT 60.734 61.111 0.00 0.00 38.04 3.99
547 548 3.000080 GCTCGTGGCTTCGACGTTG 62.000 63.158 0.00 0.00 38.04 4.10
548 549 1.660575 CTCGTGGCTTCGACGTTGT 60.661 57.895 1.96 0.00 38.04 3.32
549 550 1.876453 CTCGTGGCTTCGACGTTGTG 61.876 60.000 1.96 0.00 38.04 3.33
550 551 2.935955 GTGGCTTCGACGTTGTGG 59.064 61.111 1.96 0.00 0.00 4.17
551 552 2.970324 TGGCTTCGACGTTGTGGC 60.970 61.111 14.55 14.55 0.00 5.01
552 553 2.970324 GGCTTCGACGTTGTGGCA 60.970 61.111 18.70 0.00 0.00 4.92
553 554 2.325082 GGCTTCGACGTTGTGGCAT 61.325 57.895 18.70 0.00 0.00 4.40
554 555 1.132640 GCTTCGACGTTGTGGCATC 59.867 57.895 14.46 0.00 0.00 3.91
555 556 1.416049 CTTCGACGTTGTGGCATCG 59.584 57.895 1.96 1.17 35.91 3.84
556 557 2.548587 CTTCGACGTTGTGGCATCGC 62.549 60.000 1.96 0.00 34.59 4.58
557 558 3.112075 CGACGTTGTGGCATCGCT 61.112 61.111 8.96 0.00 30.84 4.93
558 559 2.476051 GACGTTGTGGCATCGCTG 59.524 61.111 8.96 0.00 30.84 5.18
559 560 3.027170 GACGTTGTGGCATCGCTGG 62.027 63.158 8.96 0.00 30.84 4.85
572 573 3.917760 GCTGGCTCCCGCTCGTAT 61.918 66.667 0.00 0.00 36.09 3.06
573 574 2.561956 GCTGGCTCCCGCTCGTATA 61.562 63.158 0.00 0.00 36.09 1.47
574 575 1.581954 CTGGCTCCCGCTCGTATAG 59.418 63.158 0.00 0.00 36.09 1.31
575 576 1.867919 CTGGCTCCCGCTCGTATAGG 61.868 65.000 0.00 0.00 36.09 2.57
576 577 2.637383 GGCTCCCGCTCGTATAGGG 61.637 68.421 0.00 0.00 46.40 3.53
577 578 2.963371 CTCCCGCTCGTATAGGGC 59.037 66.667 0.00 0.00 44.70 5.19
578 579 1.604023 CTCCCGCTCGTATAGGGCT 60.604 63.158 0.00 0.00 46.47 5.19
579 580 1.587933 CTCCCGCTCGTATAGGGCTC 61.588 65.000 0.00 0.00 46.47 4.70
580 581 1.901948 CCCGCTCGTATAGGGCTCA 60.902 63.158 0.00 0.00 46.47 4.26
581 582 1.286260 CCGCTCGTATAGGGCTCAC 59.714 63.158 0.00 0.00 46.47 3.51
582 583 1.452953 CCGCTCGTATAGGGCTCACA 61.453 60.000 0.00 0.00 46.47 3.58
583 584 0.598562 CGCTCGTATAGGGCTCACAT 59.401 55.000 0.00 0.00 46.47 3.21
584 585 1.000163 CGCTCGTATAGGGCTCACATT 60.000 52.381 0.00 0.00 46.47 2.71
585 586 2.545952 CGCTCGTATAGGGCTCACATTT 60.546 50.000 0.00 0.00 46.47 2.32
586 587 2.802816 GCTCGTATAGGGCTCACATTTG 59.197 50.000 0.00 0.00 44.82 2.32
587 588 2.802816 CTCGTATAGGGCTCACATTTGC 59.197 50.000 0.00 0.00 0.00 3.68
595 596 0.179119 GCTCACATTTGCCATGGAGC 60.179 55.000 18.40 9.14 40.63 4.70
596 597 0.458669 CTCACATTTGCCATGGAGCC 59.541 55.000 18.40 0.00 0.00 4.70
597 598 0.971959 TCACATTTGCCATGGAGCCC 60.972 55.000 18.40 0.00 0.00 5.19
598 599 1.078891 ACATTTGCCATGGAGCCCA 59.921 52.632 18.40 0.00 38.19 5.36
599 600 1.259840 ACATTTGCCATGGAGCCCAC 61.260 55.000 18.40 0.00 35.80 4.61
600 601 2.053865 ATTTGCCATGGAGCCCACG 61.054 57.895 18.40 0.00 35.80 4.94
601 602 4.738998 TTGCCATGGAGCCCACGG 62.739 66.667 18.40 2.32 40.24 4.94
604 605 4.802051 CCATGGAGCCCACGGTGG 62.802 72.222 20.41 20.41 35.80 4.61
605 606 3.716195 CATGGAGCCCACGGTGGA 61.716 66.667 28.36 8.41 40.96 4.02
606 607 3.717294 ATGGAGCCCACGGTGGAC 61.717 66.667 28.36 17.62 40.96 4.02
628 629 4.699522 GCCGTCCCGTCTTGGCTT 62.700 66.667 0.00 0.00 44.16 4.35
629 630 2.434359 CCGTCCCGTCTTGGCTTC 60.434 66.667 0.00 0.00 35.87 3.86
630 631 2.809601 CGTCCCGTCTTGGCTTCG 60.810 66.667 0.00 0.00 35.87 3.79
631 632 2.434359 GTCCCGTCTTGGCTTCGG 60.434 66.667 0.00 0.00 43.30 4.30
632 633 2.602267 TCCCGTCTTGGCTTCGGA 60.602 61.111 4.38 0.00 46.05 4.55
633 634 2.125512 CCCGTCTTGGCTTCGGAG 60.126 66.667 4.38 0.00 46.05 4.63
688 689 6.887626 TTTTTAGATACCTGGTGTTTGGAC 57.112 37.500 10.23 0.00 0.00 4.02
689 690 2.762535 AGATACCTGGTGTTTGGACG 57.237 50.000 10.23 0.00 0.00 4.79
690 691 1.278127 AGATACCTGGTGTTTGGACGG 59.722 52.381 10.23 0.00 0.00 4.79
692 693 0.682852 TACCTGGTGTTTGGACGGAG 59.317 55.000 10.23 0.00 0.00 4.63
693 694 1.302511 CCTGGTGTTTGGACGGAGG 60.303 63.158 0.00 0.00 0.00 4.30
695 696 1.764571 CTGGTGTTTGGACGGAGGGA 61.765 60.000 0.00 0.00 0.00 4.20
696 697 1.003718 GGTGTTTGGACGGAGGGAG 60.004 63.158 0.00 0.00 0.00 4.30
697 698 1.752833 GTGTTTGGACGGAGGGAGT 59.247 57.895 0.00 0.00 0.00 3.85
699 700 0.971386 TGTTTGGACGGAGGGAGTAC 59.029 55.000 0.00 0.00 0.00 2.73
701 702 1.345415 GTTTGGACGGAGGGAGTACAA 59.655 52.381 0.00 0.00 40.35 2.41
702 703 1.946984 TTGGACGGAGGGAGTACAAT 58.053 50.000 0.00 0.00 37.50 2.71
703 704 1.481871 TGGACGGAGGGAGTACAATC 58.518 55.000 0.00 0.00 27.89 2.67
704 705 1.006758 TGGACGGAGGGAGTACAATCT 59.993 52.381 0.00 0.00 27.89 2.40
715 722 4.321824 GGGAGTACAATCTAATCTACGCCC 60.322 50.000 0.00 0.00 40.61 6.13
719 726 6.223852 AGTACAATCTAATCTACGCCCAATG 58.776 40.000 0.00 0.00 0.00 2.82
787 794 3.632604 GGAGATCGACCATACTTCACTCA 59.367 47.826 7.03 0.00 0.00 3.41
818 838 9.520515 ACTTTCACCAGAAATGATACTACAAAT 57.479 29.630 0.00 0.00 42.49 2.32
825 845 7.641411 CCAGAAATGATACTACAAATCGCTTTG 59.359 37.037 10.05 10.05 45.92 2.77
836 860 1.919956 ATCGCTTTGCTGCACTGCTC 61.920 55.000 19.14 0.00 0.00 4.26
880 904 3.699671 TGCAAGACACACGACACG 58.300 55.556 0.00 0.00 0.00 4.49
961 1003 3.461773 CAGTGGCCGATCCCGAGT 61.462 66.667 0.00 0.00 38.22 4.18
976 1018 0.377554 CGAGTCCCGGCGCTATATAG 59.622 60.000 7.64 5.30 33.91 1.31
1061 1120 2.392181 GCAGCAGAGCAGAGCACAG 61.392 63.158 0.00 0.00 0.00 3.66
1065 1124 1.302271 CAGAGCAGAGCACAGCCAA 60.302 57.895 0.00 0.00 0.00 4.52
1066 1125 1.003597 AGAGCAGAGCACAGCCAAG 60.004 57.895 0.00 0.00 0.00 3.61
1072 1131 2.029844 GAGCACAGCCAAGTCGTCC 61.030 63.158 0.00 0.00 0.00 4.79
1135 1199 1.174078 TCAACACGGTCCAGTCGCTA 61.174 55.000 0.00 0.00 0.00 4.26
1537 1622 2.182030 GCCGTGAAGTAGCTCGCT 59.818 61.111 0.00 0.00 0.00 4.93
1551 1646 0.316278 CTCGCTTCGTGATCGATCGT 60.316 55.000 20.03 2.13 45.65 3.73
1557 1652 1.806511 TCGTGATCGATCGTTCGTTC 58.193 50.000 24.94 15.75 45.65 3.95
1558 1653 0.489077 CGTGATCGATCGTTCGTTCG 59.511 55.000 20.03 16.58 43.71 3.95
1559 1654 1.531912 GTGATCGATCGTTCGTTCGT 58.468 50.000 20.03 10.96 43.71 3.85
1560 1655 1.909532 GTGATCGATCGTTCGTTCGTT 59.090 47.619 20.03 14.18 43.71 3.85
1743 1891 1.682451 AAAGCGCCCCGATGCTACTA 61.682 55.000 2.29 0.00 41.46 1.82
1755 1903 3.821600 CGATGCTACTACACTATCACCCT 59.178 47.826 0.00 0.00 0.00 4.34
1762 1910 6.072397 GCTACTACACTATCACCCTATCAGTG 60.072 46.154 0.00 0.00 41.83 3.66
1860 2011 0.319083 TGTTGGCTGTACCCTGTACG 59.681 55.000 0.00 0.00 37.83 3.67
1868 2019 2.048023 TACCCTGTACGGTGGAGCG 61.048 63.158 14.15 0.00 36.56 5.03
1894 2045 0.183492 AGTCACCTGCACACAACCAT 59.817 50.000 0.00 0.00 0.00 3.55
1921 2604 0.025770 AAAACGACTCACAACACGCG 59.974 50.000 3.53 3.53 0.00 6.01
1937 2620 3.030308 CGCGCACACTCACTCGTT 61.030 61.111 8.75 0.00 0.00 3.85
1939 2622 1.949133 GCGCACACTCACTCGTTCA 60.949 57.895 0.30 0.00 0.00 3.18
1945 2628 2.670905 CACACTCACTCGTTCAAACACA 59.329 45.455 0.00 0.00 0.00 3.72
1966 2649 0.117140 TGGCTGAGGAGGAGAGGAAA 59.883 55.000 0.00 0.00 0.00 3.13
1968 2651 1.567357 GCTGAGGAGGAGAGGAAAGT 58.433 55.000 0.00 0.00 0.00 2.66
1969 2652 2.624557 GGCTGAGGAGGAGAGGAAAGTA 60.625 54.545 0.00 0.00 0.00 2.24
1970 2653 2.429250 GCTGAGGAGGAGAGGAAAGTAC 59.571 54.545 0.00 0.00 0.00 2.73
1971 2654 3.880117 GCTGAGGAGGAGAGGAAAGTACT 60.880 52.174 0.00 0.00 0.00 2.73
1972 2655 3.951680 CTGAGGAGGAGAGGAAAGTACTC 59.048 52.174 0.00 0.00 35.20 2.59
2008 2705 7.873719 TTTGTGAAATGAGGAAAGTACTTGA 57.126 32.000 9.34 0.00 0.00 3.02
2011 2708 7.874940 TGTGAAATGAGGAAAGTACTTGATTG 58.125 34.615 9.34 0.00 0.00 2.67
2052 2749 5.290493 ACTTGGTACTCTGATGTGTTCAA 57.710 39.130 0.00 0.00 32.78 2.69
2054 2751 5.934625 ACTTGGTACTCTGATGTGTTCAATC 59.065 40.000 0.00 0.00 32.78 2.67
2056 2753 5.237815 TGGTACTCTGATGTGTTCAATCAC 58.762 41.667 0.00 0.00 38.63 3.06
2086 2784 1.629043 TAGGAACGTCTGGTCTTGCT 58.371 50.000 0.00 0.00 0.00 3.91
2101 2799 4.547532 GTCTTGCTCGAAAGAACTAGTGA 58.452 43.478 0.00 0.00 41.32 3.41
2104 2802 6.807230 GTCTTGCTCGAAAGAACTAGTGATTA 59.193 38.462 0.00 0.00 41.32 1.75
2148 2846 3.312697 GCTCGGGATGAACAGTAAATTCC 59.687 47.826 0.00 0.00 0.00 3.01
2221 2921 6.749923 TGGCAAACTTTAGCAAATGTTTTT 57.250 29.167 0.00 0.00 39.58 1.94
2223 2923 8.443953 TGGCAAACTTTAGCAAATGTTTTTAT 57.556 26.923 0.00 0.00 39.58 1.40
2260 2962 1.737793 GTGGAATGACATCCGTGGAAC 59.262 52.381 0.00 0.00 42.76 3.62
2267 2969 4.404098 ATCCGTGGAACCCGTGCC 62.404 66.667 0.00 0.00 0.00 5.01
2320 3024 6.100404 TGAAAATAGCACTTTTGGAGCATT 57.900 33.333 1.49 0.00 0.00 3.56
2323 3028 7.598493 TGAAAATAGCACTTTTGGAGCATTAAC 59.402 33.333 1.49 0.00 0.00 2.01
2325 3030 6.840780 ATAGCACTTTTGGAGCATTAACTT 57.159 33.333 0.00 0.00 0.00 2.66
2329 3034 6.479990 AGCACTTTTGGAGCATTAACTTTTTC 59.520 34.615 0.00 0.00 0.00 2.29
2330 3035 6.292865 GCACTTTTGGAGCATTAACTTTTTCC 60.293 38.462 0.00 0.00 0.00 3.13
2335 3040 3.576550 GGAGCATTAACTTTTTCCCCACA 59.423 43.478 0.00 0.00 0.00 4.17
2380 3085 5.782047 TGATGAAATTTTACAAGCACCCAG 58.218 37.500 0.00 0.00 0.00 4.45
2388 3093 4.582701 TTACAAGCACCCAGAACATTTG 57.417 40.909 0.00 0.00 0.00 2.32
2393 3098 2.362077 AGCACCCAGAACATTTGTCAAC 59.638 45.455 0.00 0.00 0.00 3.18
2398 3103 3.796178 CCCAGAACATTTGTCAACGTTTG 59.204 43.478 0.00 0.00 0.00 2.93
2402 3107 5.003402 CAGAACATTTGTCAACGTTTGTCAC 59.997 40.000 0.00 0.00 0.00 3.67
2404 3109 4.799678 ACATTTGTCAACGTTTGTCACAA 58.200 34.783 0.00 2.94 0.00 3.33
2464 3175 1.463674 TACTGTCATGAGCTCGAGCA 58.536 50.000 36.87 19.86 45.16 4.26
2511 3222 1.396301 CTGCTTCATTGTCTCTTCGGC 59.604 52.381 0.00 0.00 0.00 5.54
2542 3253 1.608025 GCGTGGTTGAGACATGGAGAA 60.608 52.381 0.00 0.00 0.00 2.87
2554 3265 1.204704 CATGGAGAAGACACGTGGCTA 59.795 52.381 27.37 9.20 29.55 3.93
2609 3324 4.250305 GGAGGTGGTGCGTGGTGT 62.250 66.667 0.00 0.00 0.00 4.16
2613 3328 1.227734 GGTGGTGCGTGGTGTAGTT 60.228 57.895 0.00 0.00 0.00 2.24
2681 3396 1.296715 GGGGTGCATTGTCTCGACT 59.703 57.895 0.00 0.00 0.00 4.18
2682 3397 0.741221 GGGGTGCATTGTCTCGACTC 60.741 60.000 0.00 0.00 0.00 3.36
2683 3398 0.247736 GGGTGCATTGTCTCGACTCT 59.752 55.000 0.00 0.00 0.00 3.24
2684 3399 1.634702 GGTGCATTGTCTCGACTCTC 58.365 55.000 0.00 0.00 0.00 3.20
2695 3410 0.452184 TCGACTCTCGAGACCATTGC 59.548 55.000 12.08 0.00 44.82 3.56
2739 3454 4.003788 CACTTGCGTCGGAGGGGT 62.004 66.667 0.19 0.00 0.00 4.95
2745 3460 4.796231 CGTCGGAGGGGTTCGCTG 62.796 72.222 0.00 0.00 0.00 5.18
2746 3461 4.452733 GTCGGAGGGGTTCGCTGG 62.453 72.222 0.00 0.00 0.00 4.85
2747 3462 4.689549 TCGGAGGGGTTCGCTGGA 62.690 66.667 0.00 0.00 0.00 3.86
2748 3463 3.470888 CGGAGGGGTTCGCTGGAT 61.471 66.667 0.00 0.00 0.00 3.41
2749 3464 2.506472 GGAGGGGTTCGCTGGATC 59.494 66.667 0.00 0.00 0.00 3.36
2750 3465 2.107141 GAGGGGTTCGCTGGATCG 59.893 66.667 0.00 0.00 0.00 3.69
2751 3466 2.683933 AGGGGTTCGCTGGATCGT 60.684 61.111 0.00 0.00 0.00 3.73
2755 3470 1.215647 GGTTCGCTGGATCGTCTGT 59.784 57.895 0.00 0.00 0.00 3.41
2757 3472 1.135199 GGTTCGCTGGATCGTCTGTAA 60.135 52.381 0.00 0.00 0.00 2.41
2769 3493 8.183104 TGGATCGTCTGTAATATGAGATTCTT 57.817 34.615 0.00 0.00 0.00 2.52
2778 3502 5.752892 AATATGAGATTCTTGCAGCACTG 57.247 39.130 0.00 0.00 0.00 3.66
2798 3523 5.131142 CACTGTCTTCCCTCACCCTATAATT 59.869 44.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.950208 ATACTTCTTGAATAAGTAGCTTGACC 57.050 34.615 8.74 0.00 41.42 4.02
6 7 9.819267 ACCACTAATACTTCTTGAATAAGTAGC 57.181 33.333 8.74 0.00 41.42 3.58
104 105 9.835389 TTGATCAAAATTCAAAAGAACTGGAAT 57.165 25.926 5.45 0.00 30.44 3.01
105 106 9.664332 TTTGATCAAAATTCAAAAGAACTGGAA 57.336 25.926 18.45 0.00 39.46 3.53
106 107 9.835389 ATTTGATCAAAATTCAAAAGAACTGGA 57.165 25.926 23.91 0.00 43.94 3.86
111 112 9.835389 ACCAGATTTGATCAAAATTCAAAAGAA 57.165 25.926 23.91 0.00 43.94 2.52
112 113 9.480053 GACCAGATTTGATCAAAATTCAAAAGA 57.520 29.630 23.91 0.00 43.94 2.52
113 114 9.263538 TGACCAGATTTGATCAAAATTCAAAAG 57.736 29.630 23.91 10.38 43.94 2.27
114 115 9.610705 TTGACCAGATTTGATCAAAATTCAAAA 57.389 25.926 23.91 11.02 43.94 2.44
115 116 9.610705 TTTGACCAGATTTGATCAAAATTCAAA 57.389 25.926 23.91 24.13 44.60 2.69
116 117 9.044150 GTTTGACCAGATTTGATCAAAATTCAA 57.956 29.630 23.91 20.87 41.40 2.69
117 118 8.423349 AGTTTGACCAGATTTGATCAAAATTCA 58.577 29.630 23.91 17.15 41.40 2.57
118 119 8.706035 CAGTTTGACCAGATTTGATCAAAATTC 58.294 33.333 23.91 17.42 41.40 2.17
119 120 8.206189 ACAGTTTGACCAGATTTGATCAAAATT 58.794 29.630 23.91 12.60 41.40 1.82
120 121 7.654520 CACAGTTTGACCAGATTTGATCAAAAT 59.345 33.333 23.91 13.32 41.40 1.82
121 122 6.979817 CACAGTTTGACCAGATTTGATCAAAA 59.020 34.615 23.91 8.65 41.40 2.44
122 123 6.461370 CCACAGTTTGACCAGATTTGATCAAA 60.461 38.462 22.52 22.52 38.42 2.69
123 124 5.009911 CCACAGTTTGACCAGATTTGATCAA 59.990 40.000 3.38 3.38 0.00 2.57
124 125 4.520111 CCACAGTTTGACCAGATTTGATCA 59.480 41.667 0.00 0.00 0.00 2.92
125 126 4.520492 ACCACAGTTTGACCAGATTTGATC 59.480 41.667 0.00 0.00 0.00 2.92
126 127 4.473444 ACCACAGTTTGACCAGATTTGAT 58.527 39.130 0.00 0.00 0.00 2.57
127 128 3.882888 GACCACAGTTTGACCAGATTTGA 59.117 43.478 0.00 0.00 0.00 2.69
128 129 3.631686 TGACCACAGTTTGACCAGATTTG 59.368 43.478 0.00 0.00 0.00 2.32
129 130 3.897239 TGACCACAGTTTGACCAGATTT 58.103 40.909 0.00 0.00 0.00 2.17
130 131 3.576078 TGACCACAGTTTGACCAGATT 57.424 42.857 0.00 0.00 0.00 2.40
131 132 3.576078 TTGACCACAGTTTGACCAGAT 57.424 42.857 0.00 0.00 0.00 2.90
132 133 3.013921 GTTTGACCACAGTTTGACCAGA 58.986 45.455 0.00 0.00 0.00 3.86
133 134 3.016736 AGTTTGACCACAGTTTGACCAG 58.983 45.455 0.00 0.00 0.00 4.00
134 135 3.080300 AGTTTGACCACAGTTTGACCA 57.920 42.857 0.00 0.00 0.00 4.02
135 136 5.995897 ACTATAGTTTGACCACAGTTTGACC 59.004 40.000 0.00 0.00 0.00 4.02
136 137 6.147328 GGACTATAGTTTGACCACAGTTTGAC 59.853 42.308 6.88 0.00 0.00 3.18
137 138 6.183361 TGGACTATAGTTTGACCACAGTTTGA 60.183 38.462 6.88 0.00 0.00 2.69
138 139 5.995282 TGGACTATAGTTTGACCACAGTTTG 59.005 40.000 6.88 0.00 0.00 2.93
139 140 6.182507 TGGACTATAGTTTGACCACAGTTT 57.817 37.500 6.88 0.00 0.00 2.66
140 141 5.818678 TGGACTATAGTTTGACCACAGTT 57.181 39.130 6.88 0.00 0.00 3.16
141 142 5.307196 AGTTGGACTATAGTTTGACCACAGT 59.693 40.000 6.88 2.08 0.00 3.55
142 143 5.794894 AGTTGGACTATAGTTTGACCACAG 58.205 41.667 6.88 0.00 0.00 3.66
143 144 5.818678 AGTTGGACTATAGTTTGACCACA 57.181 39.130 6.88 0.00 0.00 4.17
144 145 8.788325 AATTAGTTGGACTATAGTTTGACCAC 57.212 34.615 6.88 5.17 29.64 4.16
216 217 9.353999 GTTTCACTGTTTGAGTTTGAAACTATT 57.646 29.630 11.01 0.00 43.03 1.73
217 218 7.696453 CGTTTCACTGTTTGAGTTTGAAACTAT 59.304 33.333 11.01 0.00 41.32 2.12
218 219 7.018826 CGTTTCACTGTTTGAGTTTGAAACTA 58.981 34.615 11.01 0.00 41.32 2.24
219 220 5.856455 CGTTTCACTGTTTGAGTTTGAAACT 59.144 36.000 10.82 10.82 41.32 2.66
220 221 5.627780 ACGTTTCACTGTTTGAGTTTGAAAC 59.372 36.000 13.13 13.13 40.71 2.78
221 222 5.627367 CACGTTTCACTGTTTGAGTTTGAAA 59.373 36.000 0.00 0.00 34.94 2.69
222 223 5.150683 CACGTTTCACTGTTTGAGTTTGAA 58.849 37.500 0.00 0.00 34.94 2.69
223 224 4.214545 ACACGTTTCACTGTTTGAGTTTGA 59.785 37.500 0.00 0.00 34.94 2.69
224 225 4.320690 CACACGTTTCACTGTTTGAGTTTG 59.679 41.667 0.00 0.00 34.94 2.93
225 226 4.214545 TCACACGTTTCACTGTTTGAGTTT 59.785 37.500 0.00 0.00 34.94 2.66
226 227 3.749088 TCACACGTTTCACTGTTTGAGTT 59.251 39.130 0.00 0.00 34.94 3.01
227 228 3.124636 GTCACACGTTTCACTGTTTGAGT 59.875 43.478 0.00 0.00 34.94 3.41
228 229 3.370978 AGTCACACGTTTCACTGTTTGAG 59.629 43.478 0.00 0.00 34.94 3.02
229 230 3.331150 AGTCACACGTTTCACTGTTTGA 58.669 40.909 0.00 0.00 0.00 2.69
230 231 3.740044 AGTCACACGTTTCACTGTTTG 57.260 42.857 0.00 0.00 0.00 2.93
231 232 3.749088 TGAAGTCACACGTTTCACTGTTT 59.251 39.130 0.00 0.00 0.00 2.83
232 233 3.331150 TGAAGTCACACGTTTCACTGTT 58.669 40.909 0.00 0.00 0.00 3.16
233 234 2.967362 TGAAGTCACACGTTTCACTGT 58.033 42.857 0.00 0.00 0.00 3.55
234 235 4.745125 AGTATGAAGTCACACGTTTCACTG 59.255 41.667 1.90 0.00 34.04 3.66
235 236 4.945246 AGTATGAAGTCACACGTTTCACT 58.055 39.130 1.90 0.00 34.04 3.41
236 237 4.743151 TGAGTATGAAGTCACACGTTTCAC 59.257 41.667 1.90 0.00 34.04 3.18
237 238 4.939271 TGAGTATGAAGTCACACGTTTCA 58.061 39.130 2.34 2.34 35.52 2.69
238 239 5.612709 GCTTGAGTATGAAGTCACACGTTTC 60.613 44.000 0.00 0.00 34.73 2.78
239 240 4.211374 GCTTGAGTATGAAGTCACACGTTT 59.789 41.667 0.00 0.00 34.73 3.60
240 241 3.741344 GCTTGAGTATGAAGTCACACGTT 59.259 43.478 0.00 0.00 34.73 3.99
241 242 3.005897 AGCTTGAGTATGAAGTCACACGT 59.994 43.478 0.00 0.00 34.73 4.49
242 243 3.579709 AGCTTGAGTATGAAGTCACACG 58.420 45.455 0.00 0.00 34.73 4.49
243 244 6.647067 AGTTTAGCTTGAGTATGAAGTCACAC 59.353 38.462 0.00 0.00 34.73 3.82
244 245 6.759272 AGTTTAGCTTGAGTATGAAGTCACA 58.241 36.000 0.00 0.00 34.73 3.58
245 246 6.311690 GGAGTTTAGCTTGAGTATGAAGTCAC 59.688 42.308 0.00 0.00 34.73 3.67
246 247 6.211584 AGGAGTTTAGCTTGAGTATGAAGTCA 59.788 38.462 0.00 0.00 29.53 3.41
247 248 6.533367 CAGGAGTTTAGCTTGAGTATGAAGTC 59.467 42.308 0.00 0.00 29.53 3.01
248 249 6.211584 TCAGGAGTTTAGCTTGAGTATGAAGT 59.788 38.462 0.00 0.00 29.53 3.01
249 250 6.634805 TCAGGAGTTTAGCTTGAGTATGAAG 58.365 40.000 0.00 0.00 30.20 3.02
250 251 6.351371 CCTCAGGAGTTTAGCTTGAGTATGAA 60.351 42.308 8.18 0.00 32.71 2.57
251 252 5.127845 CCTCAGGAGTTTAGCTTGAGTATGA 59.872 44.000 8.18 0.00 32.71 2.15
252 253 5.355596 CCTCAGGAGTTTAGCTTGAGTATG 58.644 45.833 8.18 0.00 32.71 2.39
253 254 4.407296 CCCTCAGGAGTTTAGCTTGAGTAT 59.593 45.833 0.00 0.00 32.71 2.12
254 255 3.769844 CCCTCAGGAGTTTAGCTTGAGTA 59.230 47.826 0.00 0.00 32.71 2.59
255 256 2.569404 CCCTCAGGAGTTTAGCTTGAGT 59.431 50.000 0.00 0.00 32.71 3.41
256 257 2.569404 ACCCTCAGGAGTTTAGCTTGAG 59.431 50.000 0.00 0.00 33.79 3.02
257 258 2.621070 ACCCTCAGGAGTTTAGCTTGA 58.379 47.619 0.00 0.00 36.73 3.02
258 259 3.425162 AACCCTCAGGAGTTTAGCTTG 57.575 47.619 0.00 0.00 36.73 4.01
259 260 5.780958 ATTAACCCTCAGGAGTTTAGCTT 57.219 39.130 0.00 0.00 36.73 3.74
260 261 5.367060 CCTATTAACCCTCAGGAGTTTAGCT 59.633 44.000 0.00 0.00 36.73 3.32
261 262 5.365895 TCCTATTAACCCTCAGGAGTTTAGC 59.634 44.000 0.00 0.00 36.73 3.09
262 263 7.619512 ATCCTATTAACCCTCAGGAGTTTAG 57.380 40.000 0.00 0.00 40.43 1.85
263 264 7.626084 TCAATCCTATTAACCCTCAGGAGTTTA 59.374 37.037 0.00 0.00 40.43 2.01
264 265 6.447084 TCAATCCTATTAACCCTCAGGAGTTT 59.553 38.462 0.00 0.00 40.43 2.66
265 266 5.970640 TCAATCCTATTAACCCTCAGGAGTT 59.029 40.000 0.00 0.00 40.43 3.01
266 267 5.367060 GTCAATCCTATTAACCCTCAGGAGT 59.633 44.000 0.00 0.00 40.43 3.85
267 268 5.366768 TGTCAATCCTATTAACCCTCAGGAG 59.633 44.000 0.00 0.00 40.43 3.69
268 269 5.285401 TGTCAATCCTATTAACCCTCAGGA 58.715 41.667 0.00 0.00 41.31 3.86
269 270 5.630415 TGTCAATCCTATTAACCCTCAGG 57.370 43.478 0.00 0.00 40.04 3.86
270 271 7.072263 AGATGTCAATCCTATTAACCCTCAG 57.928 40.000 0.00 0.00 32.77 3.35
271 272 7.451731 AAGATGTCAATCCTATTAACCCTCA 57.548 36.000 0.00 0.00 32.77 3.86
272 273 8.652290 AGTAAGATGTCAATCCTATTAACCCTC 58.348 37.037 0.00 0.00 32.77 4.30
273 274 8.568617 AGTAAGATGTCAATCCTATTAACCCT 57.431 34.615 0.00 0.00 32.77 4.34
288 289 8.547967 TGTTTTCCTGACAATAGTAAGATGTC 57.452 34.615 7.00 7.00 42.90 3.06
289 290 8.784043 GTTGTTTTCCTGACAATAGTAAGATGT 58.216 33.333 0.00 0.00 39.03 3.06
290 291 8.783093 TGTTGTTTTCCTGACAATAGTAAGATG 58.217 33.333 0.00 0.00 39.03 2.90
291 292 8.918202 TGTTGTTTTCCTGACAATAGTAAGAT 57.082 30.769 0.00 0.00 39.03 2.40
292 293 8.740123 TTGTTGTTTTCCTGACAATAGTAAGA 57.260 30.769 0.00 0.00 39.03 2.10
293 294 8.621286 ACTTGTTGTTTTCCTGACAATAGTAAG 58.379 33.333 0.00 0.00 39.03 2.34
294 295 8.514330 ACTTGTTGTTTTCCTGACAATAGTAA 57.486 30.769 0.00 0.00 39.03 2.24
295 296 9.048446 GTACTTGTTGTTTTCCTGACAATAGTA 57.952 33.333 0.00 0.00 39.03 1.82
296 297 7.554835 TGTACTTGTTGTTTTCCTGACAATAGT 59.445 33.333 0.00 10.40 39.03 2.12
297 298 7.925993 TGTACTTGTTGTTTTCCTGACAATAG 58.074 34.615 0.00 0.00 39.03 1.73
298 299 7.771361 TCTGTACTTGTTGTTTTCCTGACAATA 59.229 33.333 0.00 0.00 39.03 1.90
299 300 6.601613 TCTGTACTTGTTGTTTTCCTGACAAT 59.398 34.615 0.00 0.00 39.03 2.71
300 301 5.941058 TCTGTACTTGTTGTTTTCCTGACAA 59.059 36.000 0.00 0.00 34.83 3.18
301 302 5.353123 GTCTGTACTTGTTGTTTTCCTGACA 59.647 40.000 0.00 0.00 0.00 3.58
302 303 5.585047 AGTCTGTACTTGTTGTTTTCCTGAC 59.415 40.000 0.00 0.00 29.00 3.51
303 304 5.741011 AGTCTGTACTTGTTGTTTTCCTGA 58.259 37.500 0.00 0.00 29.00 3.86
304 305 6.436843 AAGTCTGTACTTGTTGTTTTCCTG 57.563 37.500 0.00 0.00 44.40 3.86
317 318 2.299297 CCCTCGTTTCCAAGTCTGTACT 59.701 50.000 0.00 0.00 37.65 2.73
318 319 2.612221 CCCCTCGTTTCCAAGTCTGTAC 60.612 54.545 0.00 0.00 0.00 2.90
319 320 1.621814 CCCCTCGTTTCCAAGTCTGTA 59.378 52.381 0.00 0.00 0.00 2.74
320 321 0.396811 CCCCTCGTTTCCAAGTCTGT 59.603 55.000 0.00 0.00 0.00 3.41
321 322 0.321653 CCCCCTCGTTTCCAAGTCTG 60.322 60.000 0.00 0.00 0.00 3.51
322 323 2.067197 CCCCCTCGTTTCCAAGTCT 58.933 57.895 0.00 0.00 0.00 3.24
323 324 4.716003 CCCCCTCGTTTCCAAGTC 57.284 61.111 0.00 0.00 0.00 3.01
337 338 0.693430 ACTTCCGGGTTCTATCCCCC 60.693 60.000 0.00 0.00 44.32 5.40
338 339 1.210538 AACTTCCGGGTTCTATCCCC 58.789 55.000 0.00 0.00 44.32 4.81
339 340 3.743584 GCTTAACTTCCGGGTTCTATCCC 60.744 52.174 0.00 0.00 43.78 3.85
340 341 3.464907 GCTTAACTTCCGGGTTCTATCC 58.535 50.000 0.00 0.00 0.00 2.59
341 342 3.121544 CGCTTAACTTCCGGGTTCTATC 58.878 50.000 0.00 0.00 0.00 2.08
342 343 2.498885 ACGCTTAACTTCCGGGTTCTAT 59.501 45.455 0.00 0.00 0.00 1.98
343 344 1.895131 ACGCTTAACTTCCGGGTTCTA 59.105 47.619 0.00 0.00 0.00 2.10
344 345 0.683412 ACGCTTAACTTCCGGGTTCT 59.317 50.000 0.00 0.00 0.00 3.01
345 346 0.794473 CACGCTTAACTTCCGGGTTC 59.206 55.000 0.00 0.00 0.00 3.62
346 347 0.107268 ACACGCTTAACTTCCGGGTT 59.893 50.000 0.00 0.60 34.56 4.11
347 348 0.107268 AACACGCTTAACTTCCGGGT 59.893 50.000 0.00 0.00 40.81 5.28
348 349 0.794473 GAACACGCTTAACTTCCGGG 59.206 55.000 0.00 0.00 0.00 5.73
349 350 1.459592 CTGAACACGCTTAACTTCCGG 59.540 52.381 0.00 0.00 0.00 5.14
350 351 1.459592 CCTGAACACGCTTAACTTCCG 59.540 52.381 0.00 0.00 0.00 4.30
351 352 2.490991 ACCTGAACACGCTTAACTTCC 58.509 47.619 0.00 0.00 0.00 3.46
352 353 3.303791 CCAACCTGAACACGCTTAACTTC 60.304 47.826 0.00 0.00 0.00 3.01
353 354 2.616842 CCAACCTGAACACGCTTAACTT 59.383 45.455 0.00 0.00 0.00 2.66
354 355 2.218603 CCAACCTGAACACGCTTAACT 58.781 47.619 0.00 0.00 0.00 2.24
355 356 1.265905 CCCAACCTGAACACGCTTAAC 59.734 52.381 0.00 0.00 0.00 2.01
356 357 1.600023 CCCAACCTGAACACGCTTAA 58.400 50.000 0.00 0.00 0.00 1.85
357 358 0.250553 CCCCAACCTGAACACGCTTA 60.251 55.000 0.00 0.00 0.00 3.09
358 359 1.528309 CCCCAACCTGAACACGCTT 60.528 57.895 0.00 0.00 0.00 4.68
359 360 1.412453 TACCCCAACCTGAACACGCT 61.412 55.000 0.00 0.00 0.00 5.07
360 361 0.953960 CTACCCCAACCTGAACACGC 60.954 60.000 0.00 0.00 0.00 5.34
361 362 0.395312 ACTACCCCAACCTGAACACG 59.605 55.000 0.00 0.00 0.00 4.49
362 363 1.418637 TCACTACCCCAACCTGAACAC 59.581 52.381 0.00 0.00 0.00 3.32
363 364 1.697432 CTCACTACCCCAACCTGAACA 59.303 52.381 0.00 0.00 0.00 3.18
364 365 1.975680 TCTCACTACCCCAACCTGAAC 59.024 52.381 0.00 0.00 0.00 3.18
365 366 2.257207 CTCTCACTACCCCAACCTGAA 58.743 52.381 0.00 0.00 0.00 3.02
366 367 1.552486 CCTCTCACTACCCCAACCTGA 60.552 57.143 0.00 0.00 0.00 3.86
367 368 0.905357 CCTCTCACTACCCCAACCTG 59.095 60.000 0.00 0.00 0.00 4.00
368 369 0.790993 TCCTCTCACTACCCCAACCT 59.209 55.000 0.00 0.00 0.00 3.50
369 370 1.486726 CATCCTCTCACTACCCCAACC 59.513 57.143 0.00 0.00 0.00 3.77
370 371 1.486726 CCATCCTCTCACTACCCCAAC 59.513 57.143 0.00 0.00 0.00 3.77
371 372 1.625228 CCCATCCTCTCACTACCCCAA 60.625 57.143 0.00 0.00 0.00 4.12
372 373 0.031111 CCCATCCTCTCACTACCCCA 60.031 60.000 0.00 0.00 0.00 4.96
373 374 0.031010 ACCCATCCTCTCACTACCCC 60.031 60.000 0.00 0.00 0.00 4.95
374 375 1.123928 CACCCATCCTCTCACTACCC 58.876 60.000 0.00 0.00 0.00 3.69
375 376 1.757699 GTCACCCATCCTCTCACTACC 59.242 57.143 0.00 0.00 0.00 3.18
376 377 1.757699 GGTCACCCATCCTCTCACTAC 59.242 57.143 0.00 0.00 0.00 2.73
377 378 1.685180 CGGTCACCCATCCTCTCACTA 60.685 57.143 0.00 0.00 0.00 2.74
378 379 0.972983 CGGTCACCCATCCTCTCACT 60.973 60.000 0.00 0.00 0.00 3.41
379 380 1.258445 ACGGTCACCCATCCTCTCAC 61.258 60.000 0.00 0.00 0.00 3.51
380 381 0.970937 GACGGTCACCCATCCTCTCA 60.971 60.000 2.62 0.00 0.00 3.27
381 382 1.677637 GGACGGTCACCCATCCTCTC 61.678 65.000 10.76 0.00 0.00 3.20
382 383 1.686110 GGACGGTCACCCATCCTCT 60.686 63.158 10.76 0.00 0.00 3.69
383 384 2.901042 GGACGGTCACCCATCCTC 59.099 66.667 10.76 0.00 0.00 3.71
384 385 3.075005 CGGACGGTCACCCATCCT 61.075 66.667 10.76 0.00 0.00 3.24
385 386 4.157120 CCGGACGGTCACCCATCC 62.157 72.222 10.76 1.98 0.00 3.51
386 387 4.157120 CCCGGACGGTCACCCATC 62.157 72.222 0.73 0.00 0.00 3.51
387 388 4.707768 TCCCGGACGGTCACCCAT 62.708 66.667 0.73 0.00 0.00 4.00
388 389 4.938074 TTCCCGGACGGTCACCCA 62.938 66.667 0.73 0.00 0.00 4.51
389 390 4.078516 CTTCCCGGACGGTCACCC 62.079 72.222 0.73 0.00 0.00 4.61
390 391 1.535204 TAACTTCCCGGACGGTCACC 61.535 60.000 0.73 0.00 0.00 4.02
391 392 0.108945 CTAACTTCCCGGACGGTCAC 60.109 60.000 0.73 0.00 0.00 3.67
392 393 0.251297 TCTAACTTCCCGGACGGTCA 60.251 55.000 0.73 0.00 0.00 4.02
393 394 1.109609 ATCTAACTTCCCGGACGGTC 58.890 55.000 0.73 0.00 0.00 4.79
394 395 0.822164 CATCTAACTTCCCGGACGGT 59.178 55.000 0.73 0.00 0.00 4.83
395 396 1.108776 TCATCTAACTTCCCGGACGG 58.891 55.000 0.73 3.25 0.00 4.79
396 397 3.454371 AATCATCTAACTTCCCGGACG 57.546 47.619 0.73 0.00 0.00 4.79
397 398 4.766375 TCAAATCATCTAACTTCCCGGAC 58.234 43.478 0.73 0.00 0.00 4.79
398 399 5.429681 TTCAAATCATCTAACTTCCCGGA 57.570 39.130 0.73 0.00 0.00 5.14
399 400 6.318648 TCATTTCAAATCATCTAACTTCCCGG 59.681 38.462 0.00 0.00 0.00 5.73
400 401 7.320443 TCATTTCAAATCATCTAACTTCCCG 57.680 36.000 0.00 0.00 0.00 5.14
401 402 8.906867 TCATCATTTCAAATCATCTAACTTCCC 58.093 33.333 0.00 0.00 0.00 3.97
402 403 9.947669 CTCATCATTTCAAATCATCTAACTTCC 57.052 33.333 0.00 0.00 0.00 3.46
403 404 9.947669 CCTCATCATTTCAAATCATCTAACTTC 57.052 33.333 0.00 0.00 0.00 3.01
404 405 8.910944 CCCTCATCATTTCAAATCATCTAACTT 58.089 33.333 0.00 0.00 0.00 2.66
405 406 8.057623 ACCCTCATCATTTCAAATCATCTAACT 58.942 33.333 0.00 0.00 0.00 2.24
406 407 8.230472 ACCCTCATCATTTCAAATCATCTAAC 57.770 34.615 0.00 0.00 0.00 2.34
407 408 8.689061 CAACCCTCATCATTTCAAATCATCTAA 58.311 33.333 0.00 0.00 0.00 2.10
408 409 8.054572 TCAACCCTCATCATTTCAAATCATCTA 58.945 33.333 0.00 0.00 0.00 1.98
409 410 6.893554 TCAACCCTCATCATTTCAAATCATCT 59.106 34.615 0.00 0.00 0.00 2.90
410 411 7.104043 TCAACCCTCATCATTTCAAATCATC 57.896 36.000 0.00 0.00 0.00 2.92
411 412 7.670605 ATCAACCCTCATCATTTCAAATCAT 57.329 32.000 0.00 0.00 0.00 2.45
412 413 7.484993 AATCAACCCTCATCATTTCAAATCA 57.515 32.000 0.00 0.00 0.00 2.57
413 414 9.874205 TTTAATCAACCCTCATCATTTCAAATC 57.126 29.630 0.00 0.00 0.00 2.17
414 415 9.880157 CTTTAATCAACCCTCATCATTTCAAAT 57.120 29.630 0.00 0.00 0.00 2.32
415 416 9.087871 TCTTTAATCAACCCTCATCATTTCAAA 57.912 29.630 0.00 0.00 0.00 2.69
416 417 8.648698 TCTTTAATCAACCCTCATCATTTCAA 57.351 30.769 0.00 0.00 0.00 2.69
417 418 8.827832 ATCTTTAATCAACCCTCATCATTTCA 57.172 30.769 0.00 0.00 0.00 2.69
471 472 8.924303 AGTAGAAAAAGGGCTATTTGTCTTTTT 58.076 29.630 11.80 10.99 45.94 1.94
472 473 8.360390 CAGTAGAAAAAGGGCTATTTGTCTTTT 58.640 33.333 11.80 2.64 37.76 2.27
473 474 7.039714 CCAGTAGAAAAAGGGCTATTTGTCTTT 60.040 37.037 11.80 0.00 37.76 2.52
474 475 6.434340 CCAGTAGAAAAAGGGCTATTTGTCTT 59.566 38.462 11.80 0.00 37.76 3.01
475 476 5.946377 CCAGTAGAAAAAGGGCTATTTGTCT 59.054 40.000 11.43 11.43 39.53 3.41
476 477 5.710567 ACCAGTAGAAAAAGGGCTATTTGTC 59.289 40.000 0.00 0.00 0.00 3.18
477 478 5.476945 CACCAGTAGAAAAAGGGCTATTTGT 59.523 40.000 0.00 0.00 0.00 2.83
478 479 5.476945 ACACCAGTAGAAAAAGGGCTATTTG 59.523 40.000 0.00 0.00 0.00 2.32
479 480 5.641155 ACACCAGTAGAAAAAGGGCTATTT 58.359 37.500 0.00 0.00 0.00 1.40
480 481 5.222048 TGACACCAGTAGAAAAAGGGCTATT 60.222 40.000 0.00 0.00 0.00 1.73
481 482 4.288626 TGACACCAGTAGAAAAAGGGCTAT 59.711 41.667 0.00 0.00 0.00 2.97
482 483 3.649023 TGACACCAGTAGAAAAAGGGCTA 59.351 43.478 0.00 0.00 0.00 3.93
483 484 2.441750 TGACACCAGTAGAAAAAGGGCT 59.558 45.455 0.00 0.00 0.00 5.19
484 485 2.858745 TGACACCAGTAGAAAAAGGGC 58.141 47.619 0.00 0.00 0.00 5.19
485 486 4.398319 ACATGACACCAGTAGAAAAAGGG 58.602 43.478 0.00 0.00 0.00 3.95
486 487 6.149474 CCTTACATGACACCAGTAGAAAAAGG 59.851 42.308 0.00 0.00 0.00 3.11
487 488 6.348540 GCCTTACATGACACCAGTAGAAAAAG 60.349 42.308 0.00 0.00 0.00 2.27
488 489 5.472137 GCCTTACATGACACCAGTAGAAAAA 59.528 40.000 0.00 0.00 0.00 1.94
489 490 5.001232 GCCTTACATGACACCAGTAGAAAA 58.999 41.667 0.00 0.00 0.00 2.29
490 491 4.286032 AGCCTTACATGACACCAGTAGAAA 59.714 41.667 0.00 0.00 0.00 2.52
491 492 3.838317 AGCCTTACATGACACCAGTAGAA 59.162 43.478 0.00 0.00 0.00 2.10
492 493 3.441101 AGCCTTACATGACACCAGTAGA 58.559 45.455 0.00 0.00 0.00 2.59
493 494 3.895232 AGCCTTACATGACACCAGTAG 57.105 47.619 0.00 0.00 0.00 2.57
494 495 3.580895 TCAAGCCTTACATGACACCAGTA 59.419 43.478 0.00 0.00 0.00 2.74
495 496 2.371841 TCAAGCCTTACATGACACCAGT 59.628 45.455 0.00 0.00 0.00 4.00
496 497 2.744202 GTCAAGCCTTACATGACACCAG 59.256 50.000 0.00 0.00 44.56 4.00
497 498 2.778299 GTCAAGCCTTACATGACACCA 58.222 47.619 0.00 0.00 44.56 4.17
498 499 1.732259 CGTCAAGCCTTACATGACACC 59.268 52.381 0.00 0.00 45.26 4.16
499 500 2.683968 TCGTCAAGCCTTACATGACAC 58.316 47.619 0.00 0.00 45.26 3.67
500 501 3.610040 ATCGTCAAGCCTTACATGACA 57.390 42.857 0.00 0.00 45.26 3.58
501 502 3.000322 CGAATCGTCAAGCCTTACATGAC 60.000 47.826 0.00 0.00 42.32 3.06
502 503 3.186909 CGAATCGTCAAGCCTTACATGA 58.813 45.455 0.00 0.00 0.00 3.07
503 504 2.285220 CCGAATCGTCAAGCCTTACATG 59.715 50.000 0.82 0.00 0.00 3.21
504 505 2.550978 CCGAATCGTCAAGCCTTACAT 58.449 47.619 0.82 0.00 0.00 2.29
505 506 1.404986 CCCGAATCGTCAAGCCTTACA 60.405 52.381 0.82 0.00 0.00 2.41
506 507 1.287425 CCCGAATCGTCAAGCCTTAC 58.713 55.000 0.82 0.00 0.00 2.34
507 508 0.461339 GCCCGAATCGTCAAGCCTTA 60.461 55.000 0.82 0.00 0.00 2.69
508 509 1.745489 GCCCGAATCGTCAAGCCTT 60.745 57.895 0.82 0.00 0.00 4.35
509 510 2.125106 GCCCGAATCGTCAAGCCT 60.125 61.111 0.82 0.00 0.00 4.58
510 511 2.125106 AGCCCGAATCGTCAAGCC 60.125 61.111 0.82 0.00 0.00 4.35
511 512 2.517450 CGAGCCCGAATCGTCAAGC 61.517 63.158 0.82 0.00 38.22 4.01
512 513 2.517450 GCGAGCCCGAATCGTCAAG 61.517 63.158 0.82 0.00 42.13 3.02
513 514 2.508439 GCGAGCCCGAATCGTCAA 60.508 61.111 0.82 0.00 42.13 3.18
514 515 3.411418 GAGCGAGCCCGAATCGTCA 62.411 63.158 0.82 0.00 42.13 4.35
515 516 2.655685 GAGCGAGCCCGAATCGTC 60.656 66.667 0.82 0.00 42.13 4.20
516 517 4.554363 CGAGCGAGCCCGAATCGT 62.554 66.667 0.82 0.00 42.13 3.73
517 518 4.554363 ACGAGCGAGCCCGAATCG 62.554 66.667 12.72 12.72 45.53 3.34
518 519 2.956964 CACGAGCGAGCCCGAATC 60.957 66.667 5.91 0.00 38.22 2.52
519 520 4.514577 CCACGAGCGAGCCCGAAT 62.515 66.667 5.91 0.00 38.22 3.34
529 530 2.733593 AACGTCGAAGCCACGAGC 60.734 61.111 0.00 0.00 42.88 5.03
530 531 1.660575 ACAACGTCGAAGCCACGAG 60.661 57.895 0.00 1.80 42.88 4.18
531 532 1.947146 CACAACGTCGAAGCCACGA 60.947 57.895 0.00 0.70 39.75 4.35
532 533 2.544359 CACAACGTCGAAGCCACG 59.456 61.111 0.00 0.00 43.13 4.94
533 534 2.935955 CCACAACGTCGAAGCCAC 59.064 61.111 0.00 0.00 0.00 5.01
534 535 2.970324 GCCACAACGTCGAAGCCA 60.970 61.111 0.00 0.00 0.00 4.75
535 536 2.240612 GATGCCACAACGTCGAAGCC 62.241 60.000 0.00 0.00 0.00 4.35
536 537 1.132640 GATGCCACAACGTCGAAGC 59.867 57.895 0.00 0.00 0.00 3.86
541 542 2.476051 CAGCGATGCCACAACGTC 59.524 61.111 0.00 0.00 32.42 4.34
542 543 3.049674 CCAGCGATGCCACAACGT 61.050 61.111 0.00 0.00 32.42 3.99
543 544 4.465512 GCCAGCGATGCCACAACG 62.466 66.667 0.00 0.00 32.96 4.10
544 545 3.044059 GAGCCAGCGATGCCACAAC 62.044 63.158 0.00 0.00 0.00 3.32
545 546 2.747460 GAGCCAGCGATGCCACAA 60.747 61.111 0.00 0.00 0.00 3.33
546 547 4.783621 GGAGCCAGCGATGCCACA 62.784 66.667 0.00 0.00 0.00 4.17
560 561 1.587933 GAGCCCTATACGAGCGGGAG 61.588 65.000 7.77 0.00 40.55 4.30
561 562 1.602888 GAGCCCTATACGAGCGGGA 60.603 63.158 7.77 0.00 40.55 5.14
562 563 1.901948 TGAGCCCTATACGAGCGGG 60.902 63.158 0.00 0.00 41.06 6.13
563 564 1.286260 GTGAGCCCTATACGAGCGG 59.714 63.158 0.00 0.00 0.00 5.52
564 565 0.598562 ATGTGAGCCCTATACGAGCG 59.401 55.000 0.00 0.00 0.00 5.03
565 566 2.802816 CAAATGTGAGCCCTATACGAGC 59.197 50.000 0.00 0.00 0.00 5.03
566 567 2.802816 GCAAATGTGAGCCCTATACGAG 59.197 50.000 0.00 0.00 0.00 4.18
567 568 2.484770 GGCAAATGTGAGCCCTATACGA 60.485 50.000 0.00 0.00 45.18 3.43
568 569 1.873591 GGCAAATGTGAGCCCTATACG 59.126 52.381 0.00 0.00 45.18 3.06
576 577 0.179119 GCTCCATGGCAAATGTGAGC 60.179 55.000 6.96 17.79 36.22 4.26
577 578 0.458669 GGCTCCATGGCAAATGTGAG 59.541 55.000 6.96 0.00 41.37 3.51
578 579 0.971959 GGGCTCCATGGCAAATGTGA 60.972 55.000 6.96 0.00 43.83 3.58
579 580 1.259142 TGGGCTCCATGGCAAATGTG 61.259 55.000 6.96 0.00 43.83 3.21
580 581 1.078891 TGGGCTCCATGGCAAATGT 59.921 52.632 6.96 0.00 43.83 2.71
581 582 1.518774 GTGGGCTCCATGGCAAATG 59.481 57.895 6.96 0.00 43.83 2.32
582 583 2.053865 CGTGGGCTCCATGGCAAAT 61.054 57.895 6.96 0.00 43.83 2.32
583 584 2.676121 CGTGGGCTCCATGGCAAA 60.676 61.111 6.96 0.00 43.83 3.68
588 589 3.716195 TCCACCGTGGGCTCCATG 61.716 66.667 17.76 6.48 38.32 3.66
589 590 3.717294 GTCCACCGTGGGCTCCAT 61.717 66.667 15.28 0.00 39.55 3.41
614 615 2.434359 CCGAAGCCAAGACGGGAC 60.434 66.667 0.00 0.00 42.48 4.46
615 616 2.602267 TCCGAAGCCAAGACGGGA 60.602 61.111 0.00 0.00 45.61 5.14
616 617 2.125512 CTCCGAAGCCAAGACGGG 60.126 66.667 0.00 0.00 45.61 5.28
617 618 2.815647 GCTCCGAAGCCAAGACGG 60.816 66.667 0.00 0.00 43.10 4.79
618 619 3.181967 CGCTCCGAAGCCAAGACG 61.182 66.667 0.00 0.00 46.34 4.18
619 620 1.374252 TTCGCTCCGAAGCCAAGAC 60.374 57.895 0.00 0.00 46.34 3.01
620 621 3.056458 TTCGCTCCGAAGCCAAGA 58.944 55.556 0.00 0.00 46.34 3.02
627 628 1.531149 CTTTTTCAGCTTCGCTCCGAA 59.469 47.619 0.00 0.00 43.75 4.30
628 629 1.148310 CTTTTTCAGCTTCGCTCCGA 58.852 50.000 0.00 0.00 36.40 4.55
629 630 0.868406 ACTTTTTCAGCTTCGCTCCG 59.132 50.000 0.00 0.00 36.40 4.63
630 631 3.067833 AGTACTTTTTCAGCTTCGCTCC 58.932 45.455 0.00 0.00 36.40 4.70
631 632 3.741344 TCAGTACTTTTTCAGCTTCGCTC 59.259 43.478 0.00 0.00 36.40 5.03
632 633 3.495001 GTCAGTACTTTTTCAGCTTCGCT 59.505 43.478 0.00 0.00 40.77 4.93
633 634 3.247648 TGTCAGTACTTTTTCAGCTTCGC 59.752 43.478 0.00 0.00 0.00 4.70
634 635 4.270084 TGTGTCAGTACTTTTTCAGCTTCG 59.730 41.667 0.00 0.00 0.00 3.79
635 636 5.064707 TGTGTGTCAGTACTTTTTCAGCTTC 59.935 40.000 0.00 0.00 0.00 3.86
636 637 4.941263 TGTGTGTCAGTACTTTTTCAGCTT 59.059 37.500 0.00 0.00 0.00 3.74
637 638 4.513442 TGTGTGTCAGTACTTTTTCAGCT 58.487 39.130 0.00 0.00 0.00 4.24
638 639 4.875544 TGTGTGTCAGTACTTTTTCAGC 57.124 40.909 0.00 0.00 0.00 4.26
639 640 7.305474 AGTTTTGTGTGTCAGTACTTTTTCAG 58.695 34.615 0.00 0.00 0.00 3.02
640 641 7.209471 AGTTTTGTGTGTCAGTACTTTTTCA 57.791 32.000 0.00 0.00 0.00 2.69
641 642 8.515473 AAAGTTTTGTGTGTCAGTACTTTTTC 57.485 30.769 0.00 0.00 37.78 2.29
642 643 8.880878 AAAAGTTTTGTGTGTCAGTACTTTTT 57.119 26.923 0.00 0.00 42.15 1.94
643 644 8.880878 AAAAAGTTTTGTGTGTCAGTACTTTT 57.119 26.923 0.61 0.00 44.03 2.27
670 671 1.278127 CCGTCCAAACACCAGGTATCT 59.722 52.381 0.00 0.00 0.00 1.98
677 678 1.764571 CTCCCTCCGTCCAAACACCA 61.765 60.000 0.00 0.00 0.00 4.17
685 686 1.777941 AGATTGTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
687 688 4.805744 AGATTAGATTGTACTCCCTCCGT 58.194 43.478 0.00 0.00 0.00 4.69
688 689 5.106634 CGTAGATTAGATTGTACTCCCTCCG 60.107 48.000 0.00 0.00 0.00 4.63
689 690 5.335819 GCGTAGATTAGATTGTACTCCCTCC 60.336 48.000 0.00 0.00 0.00 4.30
690 691 5.335819 GGCGTAGATTAGATTGTACTCCCTC 60.336 48.000 0.00 0.00 0.00 4.30
692 693 4.321824 GGGCGTAGATTAGATTGTACTCCC 60.322 50.000 0.00 0.00 34.19 4.30
693 694 4.280174 TGGGCGTAGATTAGATTGTACTCC 59.720 45.833 0.00 0.00 0.00 3.85
695 696 5.864418 TTGGGCGTAGATTAGATTGTACT 57.136 39.130 0.00 0.00 0.00 2.73
696 697 5.408604 CCATTGGGCGTAGATTAGATTGTAC 59.591 44.000 0.00 0.00 0.00 2.90
697 698 5.547465 CCATTGGGCGTAGATTAGATTGTA 58.453 41.667 0.00 0.00 0.00 2.41
715 722 2.242043 ACTTTCTGTTGGAGGCCATTG 58.758 47.619 5.01 0.00 31.53 2.82
719 726 2.160205 GGTTACTTTCTGTTGGAGGCC 58.840 52.381 0.00 0.00 0.00 5.19
765 772 3.632604 TGAGTGAAGTATGGTCGATCTCC 59.367 47.826 0.00 0.00 0.00 3.71
787 794 7.628234 AGTATCATTTCTGGTGAAAGTGAGAT 58.372 34.615 0.00 0.00 44.25 2.75
818 838 2.592574 AGCAGTGCAGCAAAGCGA 60.593 55.556 19.20 0.00 37.31 4.93
836 860 1.338337 ACCTAGCAGTAGCATAGCACG 59.662 52.381 0.00 0.00 45.49 5.34
910 934 2.401766 GCAGGAATGGCACCGTCAG 61.402 63.158 0.00 0.00 0.00 3.51
961 1003 0.245539 GCAACTATATAGCGCCGGGA 59.754 55.000 2.29 0.00 0.00 5.14
1061 1120 3.591254 AAGCGAGGGACGACTTGGC 62.591 63.158 0.00 0.00 45.77 4.52
1065 1124 1.587933 GACTGAAGCGAGGGACGACT 61.588 60.000 0.00 0.00 45.77 4.18
1066 1125 1.153997 GACTGAAGCGAGGGACGAC 60.154 63.158 0.00 0.00 45.77 4.34
1072 1131 0.807667 CGGATTGGACTGAAGCGAGG 60.808 60.000 0.00 0.00 0.00 4.63
1529 1614 2.390427 TCGATCACGAAGCGAGCTA 58.610 52.632 0.00 0.00 45.74 3.32
1558 1653 0.731417 TAGAGAGCAGGCGTACGAAC 59.269 55.000 21.65 11.02 0.00 3.95
1559 1654 0.731417 GTAGAGAGCAGGCGTACGAA 59.269 55.000 21.65 0.00 0.00 3.85
1560 1655 0.392060 TGTAGAGAGCAGGCGTACGA 60.392 55.000 21.65 0.00 0.00 3.43
1625 1727 4.711949 CTGGCTGCTGCTTCCGGT 62.712 66.667 15.64 0.00 39.59 5.28
1644 1747 0.927539 GCGCGCGTAGTTCTACTACC 60.928 60.000 32.35 5.47 46.27 3.18
1703 1850 0.669619 TCAGTGTAACGGTCTTCGCA 59.330 50.000 0.00 0.00 45.86 5.10
1705 1852 2.410785 TGTCAGTGTAACGGTCTTCG 57.589 50.000 0.00 0.00 45.86 3.79
1712 1860 0.110823 GGCGCTTTGTCAGTGTAACG 60.111 55.000 7.64 0.00 45.86 3.18
1743 1891 4.219115 CTCCACTGATAGGGTGATAGTGT 58.781 47.826 0.00 0.00 37.61 3.55
1822 1970 5.277490 CCAACATATCTGCAAATAGGACACG 60.277 44.000 0.00 0.00 0.00 4.49
1840 1991 1.066430 CGTACAGGGTACAGCCAACAT 60.066 52.381 7.25 0.00 39.65 2.71
1860 2011 0.606604 TGACTACCTTTCGCTCCACC 59.393 55.000 0.00 0.00 0.00 4.61
1906 2057 4.394941 CGCGCGTGTTGTGAGTCG 62.395 66.667 24.19 0.00 0.00 4.18
1907 2058 4.702826 GCGCGCGTGTTGTGAGTC 62.703 66.667 32.35 6.30 0.00 3.36
1921 2604 1.487452 TTGAACGAGTGAGTGTGCGC 61.487 55.000 0.00 0.00 0.00 6.09
1937 2620 0.836606 TCCTCAGCCACTGTGTTTGA 59.163 50.000 7.08 8.82 32.61 2.69
1939 2622 0.109342 CCTCCTCAGCCACTGTGTTT 59.891 55.000 7.08 0.00 32.61 2.83
1945 2628 1.001503 CCTCTCCTCCTCAGCCACT 59.998 63.158 0.00 0.00 0.00 4.00
2086 2784 5.185249 AGCCACTAATCACTAGTTCTTTCGA 59.815 40.000 0.00 0.00 38.92 3.71
2101 2799 1.568504 TGAGTTCGGGAGCCACTAAT 58.431 50.000 0.00 0.00 0.00 1.73
2104 2802 0.693049 ATTTGAGTTCGGGAGCCACT 59.307 50.000 0.00 0.00 0.00 4.00
2191 2891 7.384932 ACATTTGCTAAAGTTTGCCATAAGAAC 59.615 33.333 0.00 0.00 0.00 3.01
2194 2894 7.656707 AACATTTGCTAAAGTTTGCCATAAG 57.343 32.000 0.00 0.00 0.00 1.73
2221 2921 3.993081 CCACGGAAATTTTGCAAGCAATA 59.007 39.130 8.46 4.31 35.70 1.90
2223 2923 2.159043 TCCACGGAAATTTTGCAAGCAA 60.159 40.909 2.89 2.89 0.00 3.91
2320 3024 4.403113 GTGGAAGTTGTGGGGAAAAAGTTA 59.597 41.667 0.00 0.00 0.00 2.24
2323 3028 2.223711 CGTGGAAGTTGTGGGGAAAAAG 60.224 50.000 0.00 0.00 0.00 2.27
2325 3030 1.394618 CGTGGAAGTTGTGGGGAAAA 58.605 50.000 0.00 0.00 0.00 2.29
2329 3034 0.960364 CATCCGTGGAAGTTGTGGGG 60.960 60.000 0.00 0.00 0.00 4.96
2330 3035 0.250727 ACATCCGTGGAAGTTGTGGG 60.251 55.000 0.00 0.00 0.00 4.61
2335 3040 1.003233 GGAAGGACATCCGTGGAAGTT 59.997 52.381 0.00 0.00 42.08 2.66
2380 3085 4.854291 TGTGACAAACGTTGACAAATGTTC 59.146 37.500 0.00 0.33 43.26 3.18
2427 3138 7.881142 TGACAGTAAATTCCGAAACAAATGAT 58.119 30.769 0.00 0.00 0.00 2.45
2464 3175 2.693069 CAGCGGACTTGATGTTTCTCT 58.307 47.619 0.00 0.00 0.00 3.10
2476 3187 2.667536 CAGCAACTGCAGCGGACT 60.668 61.111 15.27 3.24 45.16 3.85
2542 3253 0.895100 TTACCCGTAGCCACGTGTCT 60.895 55.000 15.65 10.02 46.96 3.41
2609 3324 1.281867 CCACCATCAGGCCAAGAACTA 59.718 52.381 5.01 0.00 39.06 2.24
2613 3328 2.356278 GCCACCATCAGGCCAAGA 59.644 61.111 5.01 2.09 46.50 3.02
2681 3396 0.178767 CATGGGCAATGGTCTCGAGA 59.821 55.000 12.08 12.08 32.10 4.04
2682 3397 1.442526 GCATGGGCAATGGTCTCGAG 61.443 60.000 5.93 5.93 40.72 4.04
2683 3398 1.451927 GCATGGGCAATGGTCTCGA 60.452 57.895 3.59 0.00 40.72 4.04
2684 3399 2.484062 GGCATGGGCAATGGTCTCG 61.484 63.158 3.59 0.00 43.71 4.04
2695 3410 2.366266 CAATGGTAAATCTGGGCATGGG 59.634 50.000 0.00 0.00 0.00 4.00
2739 3454 4.277423 TCATATTACAGACGATCCAGCGAA 59.723 41.667 0.00 0.00 34.83 4.70
2743 3458 7.825681 AGAATCTCATATTACAGACGATCCAG 58.174 38.462 0.00 0.00 0.00 3.86
2744 3459 7.767250 AGAATCTCATATTACAGACGATCCA 57.233 36.000 0.00 0.00 0.00 3.41
2745 3460 7.062839 GCAAGAATCTCATATTACAGACGATCC 59.937 40.741 0.00 0.00 0.00 3.36
2746 3461 7.596621 TGCAAGAATCTCATATTACAGACGATC 59.403 37.037 0.00 0.00 0.00 3.69
2747 3462 7.436933 TGCAAGAATCTCATATTACAGACGAT 58.563 34.615 0.00 0.00 0.00 3.73
2748 3463 6.805713 TGCAAGAATCTCATATTACAGACGA 58.194 36.000 0.00 0.00 0.00 4.20
2749 3464 6.346439 GCTGCAAGAATCTCATATTACAGACG 60.346 42.308 0.00 0.00 34.07 4.18
2750 3465 6.481313 TGCTGCAAGAATCTCATATTACAGAC 59.519 38.462 0.00 0.00 34.07 3.51
2751 3466 6.481313 GTGCTGCAAGAATCTCATATTACAGA 59.519 38.462 2.77 0.00 34.07 3.41
2755 3470 6.351711 ACAGTGCTGCAAGAATCTCATATTA 58.648 36.000 2.77 0.00 34.07 0.98
2757 3472 4.778579 ACAGTGCTGCAAGAATCTCATAT 58.221 39.130 2.77 0.00 34.07 1.78
2769 3493 1.372683 GAGGGAAGACAGTGCTGCA 59.627 57.895 0.00 0.00 0.00 4.41
2778 3502 4.822350 GCAAATTATAGGGTGAGGGAAGAC 59.178 45.833 0.00 0.00 0.00 3.01
2798 3523 0.882484 TCGATTCACAAGTGGCGCAA 60.882 50.000 10.83 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.