Multiple sequence alignment - TraesCS2D01G493300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G493300 chr2D 100.000 2544 0 0 1 2544 590930389 590927846 0 4698
1 TraesCS2D01G493300 chr2D 92.168 1979 134 14 579 2543 12544114 12542143 0 2776
2 TraesCS2D01G493300 chr7B 91.154 1967 156 16 585 2543 685254378 685252422 0 2652
3 TraesCS2D01G493300 chr7B 88.574 1978 178 24 585 2538 691229730 691227777 0 2357
4 TraesCS2D01G493300 chr6A 90.288 1977 168 17 586 2543 574946044 574944073 0 2566
5 TraesCS2D01G493300 chr3B 90.276 1954 170 19 588 2534 124502329 124500389 0 2538
6 TraesCS2D01G493300 chr3B 89.862 1963 180 17 588 2543 124560191 124558241 0 2505
7 TraesCS2D01G493300 chr3B 89.545 1980 173 20 578 2543 778932266 778930307 0 2479
8 TraesCS2D01G493300 chr3B 90.618 1748 147 15 588 2328 124399476 124397739 0 2303
9 TraesCS2D01G493300 chr3B 86.404 912 71 20 1634 2543 821332451 821333311 0 948
10 TraesCS2D01G493300 chr5D 92.667 1691 104 15 851 2535 353835367 353833691 0 2418
11 TraesCS2D01G493300 chr3A 91.834 1739 126 15 586 2318 47284897 47286625 0 2410
12 TraesCS2D01G493300 chr2B 95.960 594 16 5 1 587 716553222 716553814 0 957
13 TraesCS2D01G493300 chr2A 93.522 494 21 6 1 487 725913543 725914032 0 725


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G493300 chr2D 590927846 590930389 2543 True 4698 4698 100.000 1 2544 1 chr2D.!!$R2 2543
1 TraesCS2D01G493300 chr2D 12542143 12544114 1971 True 2776 2776 92.168 579 2543 1 chr2D.!!$R1 1964
2 TraesCS2D01G493300 chr7B 685252422 685254378 1956 True 2652 2652 91.154 585 2543 1 chr7B.!!$R1 1958
3 TraesCS2D01G493300 chr7B 691227777 691229730 1953 True 2357 2357 88.574 585 2538 1 chr7B.!!$R2 1953
4 TraesCS2D01G493300 chr6A 574944073 574946044 1971 True 2566 2566 90.288 586 2543 1 chr6A.!!$R1 1957
5 TraesCS2D01G493300 chr3B 124500389 124502329 1940 True 2538 2538 90.276 588 2534 1 chr3B.!!$R2 1946
6 TraesCS2D01G493300 chr3B 124558241 124560191 1950 True 2505 2505 89.862 588 2543 1 chr3B.!!$R3 1955
7 TraesCS2D01G493300 chr3B 778930307 778932266 1959 True 2479 2479 89.545 578 2543 1 chr3B.!!$R4 1965
8 TraesCS2D01G493300 chr3B 124397739 124399476 1737 True 2303 2303 90.618 588 2328 1 chr3B.!!$R1 1740
9 TraesCS2D01G493300 chr3B 821332451 821333311 860 False 948 948 86.404 1634 2543 1 chr3B.!!$F1 909
10 TraesCS2D01G493300 chr5D 353833691 353835367 1676 True 2418 2418 92.667 851 2535 1 chr5D.!!$R1 1684
11 TraesCS2D01G493300 chr3A 47284897 47286625 1728 False 2410 2410 91.834 586 2318 1 chr3A.!!$F1 1732
12 TraesCS2D01G493300 chr2B 716553222 716553814 592 False 957 957 95.960 1 587 1 chr2B.!!$F1 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.033504 GCCACCAAGTCTCTCAACGA 59.966 55.0 0.0 0.0 0.0 3.85 F
325 326 0.038599 TACGTGTGTAGCAGGGAGGA 59.961 55.0 0.0 0.0 37.3 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1196 1207 0.251787 ACCCATTGCTCAAAGTCCCC 60.252 55.0 0.0 0.0 0.0 4.81 R
2193 2574 0.321564 CTGGGTTTGAGTCGCATCCA 60.322 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.446512 GGAGGAGCCCATACTGGAG 58.553 63.158 0.00 0.00 40.96 3.86
41 42 0.985490 GGAGGAGCCCATCACCTTCT 60.985 60.000 0.00 0.00 35.81 2.85
108 109 1.604593 GCAAGAAGCAGGCCAAGGA 60.605 57.895 5.01 0.00 44.79 3.36
109 110 1.871126 GCAAGAAGCAGGCCAAGGAC 61.871 60.000 5.01 0.00 44.79 3.85
110 111 1.075659 AAGAAGCAGGCCAAGGACC 59.924 57.895 5.01 0.00 0.00 4.46
111 112 1.719063 AAGAAGCAGGCCAAGGACCA 61.719 55.000 5.01 0.00 0.00 4.02
112 113 1.676967 GAAGCAGGCCAAGGACCAG 60.677 63.158 5.01 0.00 0.00 4.00
113 114 3.875510 AAGCAGGCCAAGGACCAGC 62.876 63.158 5.01 8.25 39.82 4.85
114 115 4.357279 GCAGGCCAAGGACCAGCT 62.357 66.667 5.01 0.00 36.80 4.24
115 116 2.360852 CAGGCCAAGGACCAGCTG 60.361 66.667 6.78 6.78 0.00 4.24
116 117 2.530151 AGGCCAAGGACCAGCTGA 60.530 61.111 17.39 0.00 0.00 4.26
117 118 1.927527 AGGCCAAGGACCAGCTGAT 60.928 57.895 17.39 0.00 0.00 2.90
118 119 1.751927 GGCCAAGGACCAGCTGATG 60.752 63.158 17.39 1.02 0.00 3.07
119 120 2.413142 GCCAAGGACCAGCTGATGC 61.413 63.158 17.39 2.08 40.05 3.91
120 121 1.001764 CCAAGGACCAGCTGATGCA 60.002 57.895 17.39 0.00 42.74 3.96
121 122 1.030488 CCAAGGACCAGCTGATGCAG 61.030 60.000 17.39 0.00 42.74 4.41
151 152 3.128188 CTCCAGCAGCAGCAGCAG 61.128 66.667 12.92 3.65 45.49 4.24
152 153 4.717313 TCCAGCAGCAGCAGCAGG 62.717 66.667 14.41 14.41 45.49 4.85
190 191 3.953775 CCCACCGCCACCAAGTCT 61.954 66.667 0.00 0.00 0.00 3.24
191 192 2.358737 CCACCGCCACCAAGTCTC 60.359 66.667 0.00 0.00 0.00 3.36
192 193 2.743718 CACCGCCACCAAGTCTCT 59.256 61.111 0.00 0.00 0.00 3.10
193 194 1.374758 CACCGCCACCAAGTCTCTC 60.375 63.158 0.00 0.00 0.00 3.20
194 195 1.837051 ACCGCCACCAAGTCTCTCA 60.837 57.895 0.00 0.00 0.00 3.27
195 196 1.371183 CCGCCACCAAGTCTCTCAA 59.629 57.895 0.00 0.00 0.00 3.02
196 197 0.951040 CCGCCACCAAGTCTCTCAAC 60.951 60.000 0.00 0.00 0.00 3.18
197 198 1.284982 CGCCACCAAGTCTCTCAACG 61.285 60.000 0.00 0.00 0.00 4.10
198 199 0.033504 GCCACCAAGTCTCTCAACGA 59.966 55.000 0.00 0.00 0.00 3.85
199 200 1.540363 GCCACCAAGTCTCTCAACGAA 60.540 52.381 0.00 0.00 0.00 3.85
200 201 2.833794 CCACCAAGTCTCTCAACGAAA 58.166 47.619 0.00 0.00 0.00 3.46
201 202 3.403038 CCACCAAGTCTCTCAACGAAAT 58.597 45.455 0.00 0.00 0.00 2.17
202 203 3.815401 CCACCAAGTCTCTCAACGAAATT 59.185 43.478 0.00 0.00 0.00 1.82
203 204 4.083802 CCACCAAGTCTCTCAACGAAATTC 60.084 45.833 0.00 0.00 0.00 2.17
204 205 4.752101 CACCAAGTCTCTCAACGAAATTCT 59.248 41.667 0.00 0.00 0.00 2.40
205 206 5.237344 CACCAAGTCTCTCAACGAAATTCTT 59.763 40.000 0.00 0.00 0.00 2.52
206 207 5.237344 ACCAAGTCTCTCAACGAAATTCTTG 59.763 40.000 0.00 0.00 0.00 3.02
207 208 4.999751 AGTCTCTCAACGAAATTCTTGC 57.000 40.909 0.00 0.00 0.00 4.01
208 209 3.748568 AGTCTCTCAACGAAATTCTTGCC 59.251 43.478 0.00 0.00 0.00 4.52
209 210 3.748568 GTCTCTCAACGAAATTCTTGCCT 59.251 43.478 0.00 0.00 0.00 4.75
210 211 4.929808 GTCTCTCAACGAAATTCTTGCCTA 59.070 41.667 0.00 0.00 0.00 3.93
211 212 5.062809 GTCTCTCAACGAAATTCTTGCCTAG 59.937 44.000 0.00 0.00 0.00 3.02
212 213 5.047306 TCTCTCAACGAAATTCTTGCCTAGA 60.047 40.000 0.00 0.00 0.00 2.43
213 214 5.734720 TCTCAACGAAATTCTTGCCTAGAT 58.265 37.500 0.00 0.00 31.54 1.98
214 215 5.812642 TCTCAACGAAATTCTTGCCTAGATC 59.187 40.000 0.00 0.00 31.54 2.75
215 216 5.487433 TCAACGAAATTCTTGCCTAGATCA 58.513 37.500 0.00 0.00 31.54 2.92
216 217 6.115446 TCAACGAAATTCTTGCCTAGATCAT 58.885 36.000 0.00 0.00 31.54 2.45
217 218 6.599244 TCAACGAAATTCTTGCCTAGATCATT 59.401 34.615 0.00 0.00 31.54 2.57
218 219 6.610741 ACGAAATTCTTGCCTAGATCATTC 57.389 37.500 0.00 0.00 31.54 2.67
219 220 5.529060 ACGAAATTCTTGCCTAGATCATTCC 59.471 40.000 0.00 0.00 31.54 3.01
220 221 5.333645 CGAAATTCTTGCCTAGATCATTCCG 60.334 44.000 0.00 0.00 31.54 4.30
221 222 3.475566 TTCTTGCCTAGATCATTCCGG 57.524 47.619 0.00 0.00 31.54 5.14
222 223 1.070758 TCTTGCCTAGATCATTCCGGC 59.929 52.381 0.00 0.00 38.68 6.13
223 224 0.249868 TTGCCTAGATCATTCCGGCG 60.250 55.000 0.00 0.00 40.21 6.46
224 225 1.374758 GCCTAGATCATTCCGGCGG 60.375 63.158 22.51 22.51 31.68 6.13
225 226 1.293498 CCTAGATCATTCCGGCGGG 59.707 63.158 27.98 10.57 0.00 6.13
226 227 1.293498 CTAGATCATTCCGGCGGGG 59.707 63.158 27.98 16.15 37.02 5.73
227 228 2.788191 CTAGATCATTCCGGCGGGGC 62.788 65.000 27.98 9.14 34.94 5.80
238 239 2.970324 GCGGGGCGCGATTCAATA 60.970 61.111 28.78 0.00 44.55 1.90
239 240 2.325082 GCGGGGCGCGATTCAATAT 61.325 57.895 28.78 0.00 44.55 1.28
240 241 1.852067 GCGGGGCGCGATTCAATATT 61.852 55.000 28.78 0.00 44.55 1.28
241 242 0.591170 CGGGGCGCGATTCAATATTT 59.409 50.000 20.10 0.00 0.00 1.40
242 243 1.399727 CGGGGCGCGATTCAATATTTC 60.400 52.381 20.10 0.00 0.00 2.17
243 244 1.606668 GGGGCGCGATTCAATATTTCA 59.393 47.619 12.10 0.00 0.00 2.69
244 245 2.034053 GGGGCGCGATTCAATATTTCAA 59.966 45.455 12.10 0.00 0.00 2.69
245 246 3.305335 GGGGCGCGATTCAATATTTCAAT 60.305 43.478 12.10 0.00 0.00 2.57
246 247 4.298332 GGGCGCGATTCAATATTTCAATT 58.702 39.130 12.10 0.00 0.00 2.32
247 248 4.148696 GGGCGCGATTCAATATTTCAATTG 59.851 41.667 12.10 0.00 38.05 2.32
248 249 4.975502 GGCGCGATTCAATATTTCAATTGA 59.024 37.500 12.10 3.38 42.63 2.57
249 250 5.630680 GGCGCGATTCAATATTTCAATTGAT 59.369 36.000 12.10 0.00 43.50 2.57
250 251 6.144402 GGCGCGATTCAATATTTCAATTGATT 59.856 34.615 12.10 2.85 43.50 2.57
251 252 7.325821 GGCGCGATTCAATATTTCAATTGATTA 59.674 33.333 12.10 5.11 43.50 1.75
252 253 8.689954 GCGCGATTCAATATTTCAATTGATTAA 58.310 29.630 12.10 1.68 43.50 1.40
259 260 9.247126 TCAATATTTCAATTGATTAATGCGTGG 57.753 29.630 9.40 0.00 40.17 4.94
260 261 8.489559 CAATATTTCAATTGATTAATGCGTGGG 58.510 33.333 9.40 0.00 38.84 4.61
261 262 5.651387 TTTCAATTGATTAATGCGTGGGA 57.349 34.783 9.40 0.00 0.00 4.37
262 263 5.850557 TTCAATTGATTAATGCGTGGGAT 57.149 34.783 9.40 0.00 0.00 3.85
263 264 5.850557 TCAATTGATTAATGCGTGGGATT 57.149 34.783 3.38 0.00 0.00 3.01
264 265 6.219417 TCAATTGATTAATGCGTGGGATTT 57.781 33.333 3.38 0.00 0.00 2.17
265 266 6.041511 TCAATTGATTAATGCGTGGGATTTG 58.958 36.000 3.38 0.00 0.00 2.32
266 267 5.850557 ATTGATTAATGCGTGGGATTTGA 57.149 34.783 0.00 0.00 0.00 2.69
267 268 5.850557 TTGATTAATGCGTGGGATTTGAT 57.149 34.783 0.00 0.00 0.00 2.57
268 269 5.850557 TGATTAATGCGTGGGATTTGATT 57.149 34.783 0.00 0.00 0.00 2.57
269 270 5.830912 TGATTAATGCGTGGGATTTGATTC 58.169 37.500 0.00 0.00 0.00 2.52
270 271 5.593909 TGATTAATGCGTGGGATTTGATTCT 59.406 36.000 0.00 0.00 0.00 2.40
271 272 5.499139 TTAATGCGTGGGATTTGATTCTC 57.501 39.130 0.00 0.00 0.00 2.87
272 273 1.750193 TGCGTGGGATTTGATTCTCC 58.250 50.000 0.00 0.00 0.00 3.71
273 274 1.281867 TGCGTGGGATTTGATTCTCCT 59.718 47.619 0.00 0.00 0.00 3.69
274 275 2.503765 TGCGTGGGATTTGATTCTCCTA 59.496 45.455 0.00 0.00 0.00 2.94
275 276 3.054728 TGCGTGGGATTTGATTCTCCTAA 60.055 43.478 0.00 0.00 0.00 2.69
276 277 3.561725 GCGTGGGATTTGATTCTCCTAAG 59.438 47.826 0.00 0.00 0.00 2.18
277 278 4.770795 CGTGGGATTTGATTCTCCTAAGT 58.229 43.478 0.00 0.00 0.00 2.24
278 279 5.684030 GCGTGGGATTTGATTCTCCTAAGTA 60.684 44.000 0.00 0.00 0.00 2.24
279 280 5.753921 CGTGGGATTTGATTCTCCTAAGTAC 59.246 44.000 0.00 0.00 0.00 2.73
280 281 5.753921 GTGGGATTTGATTCTCCTAAGTACG 59.246 44.000 0.00 0.00 0.00 3.67
281 282 5.659525 TGGGATTTGATTCTCCTAAGTACGA 59.340 40.000 0.00 0.00 0.00 3.43
282 283 6.183360 TGGGATTTGATTCTCCTAAGTACGAG 60.183 42.308 0.00 0.00 0.00 4.18
283 284 6.040616 GGGATTTGATTCTCCTAAGTACGAGA 59.959 42.308 0.00 0.00 33.31 4.04
284 285 7.256012 GGGATTTGATTCTCCTAAGTACGAGAT 60.256 40.741 0.00 0.00 35.14 2.75
285 286 8.794553 GGATTTGATTCTCCTAAGTACGAGATA 58.205 37.037 0.00 0.00 35.14 1.98
293 294 9.909644 TTCTCCTAAGTACGAGATAAATTATGC 57.090 33.333 0.00 0.00 35.14 3.14
294 295 9.074576 TCTCCTAAGTACGAGATAAATTATGCA 57.925 33.333 0.00 0.00 30.16 3.96
295 296 9.862371 CTCCTAAGTACGAGATAAATTATGCAT 57.138 33.333 3.79 3.79 0.00 3.96
300 301 9.944376 AAGTACGAGATAAATTATGCATATGGT 57.056 29.630 7.36 0.94 0.00 3.55
304 305 9.547753 ACGAGATAAATTATGCATATGGTATCC 57.452 33.333 7.36 7.83 0.00 2.59
305 306 8.703336 CGAGATAAATTATGCATATGGTATCCG 58.297 37.037 7.36 13.83 0.00 4.18
306 307 9.547753 GAGATAAATTATGCATATGGTATCCGT 57.452 33.333 7.36 1.11 0.00 4.69
309 310 7.534085 AAATTATGCATATGGTATCCGTACG 57.466 36.000 8.69 8.69 0.00 3.67
310 311 5.648178 TTATGCATATGGTATCCGTACGT 57.352 39.130 15.21 0.00 0.00 3.57
311 312 3.291809 TGCATATGGTATCCGTACGTG 57.708 47.619 15.21 5.96 0.00 4.49
312 313 2.624364 TGCATATGGTATCCGTACGTGT 59.376 45.455 15.21 4.68 0.00 4.49
313 314 2.984471 GCATATGGTATCCGTACGTGTG 59.016 50.000 15.21 3.46 0.00 3.82
314 315 3.551454 GCATATGGTATCCGTACGTGTGT 60.551 47.826 15.21 0.00 0.00 3.72
315 316 4.320421 GCATATGGTATCCGTACGTGTGTA 60.320 45.833 15.21 0.00 0.00 2.90
316 317 3.976793 ATGGTATCCGTACGTGTGTAG 57.023 47.619 15.21 0.00 0.00 2.74
317 318 1.401552 TGGTATCCGTACGTGTGTAGC 59.598 52.381 15.21 10.72 0.00 3.58
318 319 1.401552 GGTATCCGTACGTGTGTAGCA 59.598 52.381 15.21 0.00 0.00 3.49
319 320 2.540361 GGTATCCGTACGTGTGTAGCAG 60.540 54.545 15.21 0.00 0.00 4.24
320 321 0.454600 ATCCGTACGTGTGTAGCAGG 59.545 55.000 15.21 0.00 38.79 4.85
321 322 1.153901 CCGTACGTGTGTAGCAGGG 60.154 63.158 15.21 0.00 37.30 4.45
322 323 1.588824 CCGTACGTGTGTAGCAGGGA 61.589 60.000 15.21 0.00 37.30 4.20
323 324 0.179171 CGTACGTGTGTAGCAGGGAG 60.179 60.000 7.22 0.00 37.30 4.30
324 325 0.172803 GTACGTGTGTAGCAGGGAGG 59.827 60.000 0.00 0.00 37.30 4.30
325 326 0.038599 TACGTGTGTAGCAGGGAGGA 59.961 55.000 0.00 0.00 37.30 3.71
326 327 1.251527 ACGTGTGTAGCAGGGAGGAG 61.252 60.000 0.00 0.00 37.30 3.69
327 328 1.219393 GTGTGTAGCAGGGAGGAGC 59.781 63.158 0.00 0.00 0.00 4.70
328 329 1.079256 TGTGTAGCAGGGAGGAGCT 59.921 57.895 0.00 0.00 44.55 4.09
329 330 0.972983 TGTGTAGCAGGGAGGAGCTC 60.973 60.000 4.71 4.71 42.05 4.09
330 331 1.754621 TGTAGCAGGGAGGAGCTCG 60.755 63.158 7.83 0.00 42.05 5.03
331 332 1.454111 GTAGCAGGGAGGAGCTCGA 60.454 63.158 7.83 0.00 42.05 4.04
332 333 1.454111 TAGCAGGGAGGAGCTCGAC 60.454 63.158 7.83 3.89 42.05 4.20
333 334 2.912987 TAGCAGGGAGGAGCTCGACC 62.913 65.000 16.33 16.33 42.05 4.79
334 335 2.043450 CAGGGAGGAGCTCGACCT 60.043 66.667 21.41 18.21 40.80 3.85
335 336 2.043450 AGGGAGGAGCTCGACCTG 60.043 66.667 21.41 0.00 37.93 4.00
336 337 2.363147 GGGAGGAGCTCGACCTGT 60.363 66.667 21.41 0.00 37.93 4.00
337 338 1.076923 GGGAGGAGCTCGACCTGTA 60.077 63.158 21.41 0.00 37.93 2.74
338 339 0.683504 GGGAGGAGCTCGACCTGTAA 60.684 60.000 21.41 0.00 37.93 2.41
339 340 1.404843 GGAGGAGCTCGACCTGTAAT 58.595 55.000 17.04 0.00 37.93 1.89
340 341 2.584236 GGAGGAGCTCGACCTGTAATA 58.416 52.381 17.04 0.00 37.93 0.98
341 342 2.957006 GGAGGAGCTCGACCTGTAATAA 59.043 50.000 17.04 0.00 37.93 1.40
342 343 3.574826 GGAGGAGCTCGACCTGTAATAAT 59.425 47.826 17.04 0.00 37.93 1.28
343 344 4.551388 GAGGAGCTCGACCTGTAATAATG 58.449 47.826 7.83 0.00 37.93 1.90
344 345 3.961408 AGGAGCTCGACCTGTAATAATGT 59.039 43.478 7.83 0.00 36.30 2.71
345 346 4.038162 AGGAGCTCGACCTGTAATAATGTC 59.962 45.833 7.83 0.00 36.30 3.06
349 350 3.836229 CGACCTGTAATAATGTCGTGC 57.164 47.619 0.00 0.00 44.00 5.34
350 351 2.215587 CGACCTGTAATAATGTCGTGCG 59.784 50.000 0.00 0.00 44.00 5.34
351 352 3.184541 GACCTGTAATAATGTCGTGCGT 58.815 45.455 0.00 0.00 0.00 5.24
352 353 2.927477 ACCTGTAATAATGTCGTGCGTG 59.073 45.455 0.00 0.00 0.00 5.34
353 354 2.284150 CCTGTAATAATGTCGTGCGTGG 59.716 50.000 0.00 0.00 0.00 4.94
354 355 3.183754 CTGTAATAATGTCGTGCGTGGA 58.816 45.455 0.00 0.00 0.00 4.02
355 356 3.586892 TGTAATAATGTCGTGCGTGGAA 58.413 40.909 0.00 0.00 0.00 3.53
356 357 3.368539 TGTAATAATGTCGTGCGTGGAAC 59.631 43.478 0.00 0.00 0.00 3.62
357 358 2.380084 ATAATGTCGTGCGTGGAACT 57.620 45.000 0.00 0.00 31.75 3.01
358 359 1.424403 TAATGTCGTGCGTGGAACTG 58.576 50.000 0.00 0.00 31.75 3.16
359 360 0.249699 AATGTCGTGCGTGGAACTGA 60.250 50.000 0.00 0.00 31.75 3.41
360 361 0.249699 ATGTCGTGCGTGGAACTGAA 60.250 50.000 0.00 0.00 31.75 3.02
361 362 1.149361 TGTCGTGCGTGGAACTGAAC 61.149 55.000 0.00 0.00 31.75 3.18
362 363 1.593209 TCGTGCGTGGAACTGAACC 60.593 57.895 0.00 0.00 31.75 3.62
363 364 2.935955 GTGCGTGGAACTGAACCG 59.064 61.111 0.00 0.00 31.75 4.44
364 365 1.593209 GTGCGTGGAACTGAACCGA 60.593 57.895 0.00 0.00 31.75 4.69
365 366 1.300620 TGCGTGGAACTGAACCGAG 60.301 57.895 0.00 0.00 31.75 4.63
366 367 2.668280 GCGTGGAACTGAACCGAGC 61.668 63.158 0.00 0.00 31.75 5.03
367 368 1.006102 CGTGGAACTGAACCGAGCT 60.006 57.895 0.00 0.00 31.75 4.09
368 369 0.242825 CGTGGAACTGAACCGAGCTA 59.757 55.000 0.00 0.00 31.75 3.32
369 370 1.336517 CGTGGAACTGAACCGAGCTAA 60.337 52.381 0.00 0.00 31.75 3.09
370 371 2.338500 GTGGAACTGAACCGAGCTAAG 58.662 52.381 0.00 0.00 0.00 2.18
371 372 1.968493 TGGAACTGAACCGAGCTAAGT 59.032 47.619 0.00 0.00 0.00 2.24
372 373 3.057033 GTGGAACTGAACCGAGCTAAGTA 60.057 47.826 0.00 0.00 0.00 2.24
373 374 3.575256 TGGAACTGAACCGAGCTAAGTAA 59.425 43.478 0.00 0.00 0.00 2.24
374 375 4.174762 GGAACTGAACCGAGCTAAGTAAG 58.825 47.826 0.00 0.00 0.00 2.34
375 376 3.870633 ACTGAACCGAGCTAAGTAAGG 57.129 47.619 0.00 0.00 0.00 2.69
376 377 3.428532 ACTGAACCGAGCTAAGTAAGGA 58.571 45.455 0.00 0.00 0.00 3.36
377 378 3.444388 ACTGAACCGAGCTAAGTAAGGAG 59.556 47.826 0.00 0.00 0.00 3.69
378 379 2.165845 TGAACCGAGCTAAGTAAGGAGC 59.834 50.000 0.00 0.00 39.08 4.70
386 387 4.832590 GCTAAGTAAGGAGCTATCGTGA 57.167 45.455 0.00 0.00 35.73 4.35
387 388 4.789784 GCTAAGTAAGGAGCTATCGTGAG 58.210 47.826 0.00 0.00 35.73 3.51
388 389 4.276431 GCTAAGTAAGGAGCTATCGTGAGT 59.724 45.833 0.00 0.00 35.73 3.41
389 390 5.221087 GCTAAGTAAGGAGCTATCGTGAGTT 60.221 44.000 0.00 0.00 35.73 3.01
390 391 5.662674 AAGTAAGGAGCTATCGTGAGTTT 57.337 39.130 0.00 0.00 0.00 2.66
391 392 5.000012 AGTAAGGAGCTATCGTGAGTTTG 58.000 43.478 0.00 0.00 0.00 2.93
392 393 2.969628 AGGAGCTATCGTGAGTTTGG 57.030 50.000 0.00 0.00 0.00 3.28
393 394 1.134670 AGGAGCTATCGTGAGTTTGGC 60.135 52.381 0.00 0.00 0.00 4.52
394 395 0.924090 GAGCTATCGTGAGTTTGGCG 59.076 55.000 0.00 0.00 0.00 5.69
395 396 0.246635 AGCTATCGTGAGTTTGGCGT 59.753 50.000 0.00 0.00 0.00 5.68
396 397 0.370273 GCTATCGTGAGTTTGGCGTG 59.630 55.000 0.00 0.00 0.00 5.34
397 398 1.710013 CTATCGTGAGTTTGGCGTGT 58.290 50.000 0.00 0.00 0.00 4.49
398 399 1.390123 CTATCGTGAGTTTGGCGTGTG 59.610 52.381 0.00 0.00 0.00 3.82
399 400 1.841663 ATCGTGAGTTTGGCGTGTGC 61.842 55.000 0.00 0.00 41.71 4.57
400 401 2.818487 CGTGAGTTTGGCGTGTGCA 61.818 57.895 0.00 0.00 45.35 4.57
401 402 1.009675 GTGAGTTTGGCGTGTGCAG 60.010 57.895 0.00 0.00 45.35 4.41
402 403 1.153269 TGAGTTTGGCGTGTGCAGA 60.153 52.632 0.00 0.00 45.35 4.26
403 404 0.746204 TGAGTTTGGCGTGTGCAGAA 60.746 50.000 0.00 0.00 45.35 3.02
404 405 0.380378 GAGTTTGGCGTGTGCAGAAA 59.620 50.000 0.00 0.00 45.35 2.52
405 406 1.001378 GAGTTTGGCGTGTGCAGAAAT 60.001 47.619 0.00 0.00 45.35 2.17
406 407 2.225491 GAGTTTGGCGTGTGCAGAAATA 59.775 45.455 0.00 0.00 45.35 1.40
407 408 2.819608 AGTTTGGCGTGTGCAGAAATAT 59.180 40.909 0.00 0.00 45.35 1.28
408 409 4.006989 AGTTTGGCGTGTGCAGAAATATA 58.993 39.130 0.00 0.00 45.35 0.86
409 410 4.094887 AGTTTGGCGTGTGCAGAAATATAG 59.905 41.667 0.00 0.00 45.35 1.31
410 411 1.939934 TGGCGTGTGCAGAAATATAGC 59.060 47.619 0.00 0.00 45.35 2.97
411 412 1.070577 GGCGTGTGCAGAAATATAGCG 60.071 52.381 0.00 0.00 45.35 4.26
412 413 1.593006 GCGTGTGCAGAAATATAGCGT 59.407 47.619 0.00 0.00 42.15 5.07
413 414 2.792674 GCGTGTGCAGAAATATAGCGTA 59.207 45.455 0.00 0.00 42.15 4.42
414 415 3.428870 GCGTGTGCAGAAATATAGCGTAT 59.571 43.478 0.00 0.00 42.15 3.06
415 416 4.619760 GCGTGTGCAGAAATATAGCGTATA 59.380 41.667 0.00 0.00 42.15 1.47
416 417 5.288712 GCGTGTGCAGAAATATAGCGTATAT 59.711 40.000 0.00 0.00 42.15 0.86
417 418 6.183360 GCGTGTGCAGAAATATAGCGTATATT 60.183 38.462 0.00 5.13 40.63 1.28
418 419 7.621426 GCGTGTGCAGAAATATAGCGTATATTT 60.621 37.037 16.24 16.24 44.82 1.40
428 429 9.918630 AAATATAGCGTATATTTCGTACTGGTT 57.081 29.630 12.98 0.00 44.03 3.67
429 430 9.918630 AATATAGCGTATATTTCGTACTGGTTT 57.081 29.630 0.00 0.00 37.95 3.27
430 431 7.864307 ATAGCGTATATTTCGTACTGGTTTC 57.136 36.000 0.00 0.00 0.00 2.78
431 432 5.899299 AGCGTATATTTCGTACTGGTTTCT 58.101 37.500 0.00 0.00 0.00 2.52
432 433 5.747197 AGCGTATATTTCGTACTGGTTTCTG 59.253 40.000 0.00 0.00 0.00 3.02
433 434 5.517770 GCGTATATTTCGTACTGGTTTCTGT 59.482 40.000 0.00 0.00 0.00 3.41
434 435 6.035327 GCGTATATTTCGTACTGGTTTCTGTT 59.965 38.462 0.00 0.00 0.00 3.16
435 436 7.220683 GCGTATATTTCGTACTGGTTTCTGTTA 59.779 37.037 0.00 0.00 0.00 2.41
436 437 9.241317 CGTATATTTCGTACTGGTTTCTGTTAT 57.759 33.333 0.00 0.00 0.00 1.89
440 441 7.656707 TTTCGTACTGGTTTCTGTTATAACC 57.343 36.000 13.01 0.00 43.28 2.85
441 442 5.723295 TCGTACTGGTTTCTGTTATAACCC 58.277 41.667 13.01 6.98 42.51 4.11
442 443 5.245751 TCGTACTGGTTTCTGTTATAACCCA 59.754 40.000 13.01 10.93 42.51 4.51
443 444 5.579511 CGTACTGGTTTCTGTTATAACCCAG 59.420 44.000 24.73 24.73 42.51 4.45
444 445 4.332828 ACTGGTTTCTGTTATAACCCAGC 58.667 43.478 25.61 13.27 42.51 4.85
445 446 3.692690 TGGTTTCTGTTATAACCCAGCC 58.307 45.455 13.01 8.50 42.51 4.85
446 447 2.681344 GGTTTCTGTTATAACCCAGCCG 59.319 50.000 13.01 0.00 38.26 5.52
447 448 3.340928 GTTTCTGTTATAACCCAGCCGT 58.659 45.455 13.01 0.00 0.00 5.68
448 449 2.684001 TCTGTTATAACCCAGCCGTG 57.316 50.000 13.01 0.00 0.00 4.94
449 450 1.903860 TCTGTTATAACCCAGCCGTGT 59.096 47.619 13.01 0.00 0.00 4.49
450 451 2.006888 CTGTTATAACCCAGCCGTGTG 58.993 52.381 13.01 0.00 0.00 3.82
451 452 1.339247 TGTTATAACCCAGCCGTGTGG 60.339 52.381 13.01 0.00 37.34 4.17
452 453 0.985760 TTATAACCCAGCCGTGTGGT 59.014 50.000 0.02 0.00 35.60 4.16
453 454 0.985760 TATAACCCAGCCGTGTGGTT 59.014 50.000 0.00 0.00 39.32 3.67
454 455 0.608035 ATAACCCAGCCGTGTGGTTG 60.608 55.000 3.51 0.00 45.40 3.77
460 461 3.053896 GCCGTGTGGTTGGGCTAC 61.054 66.667 0.00 0.00 43.52 3.58
461 462 2.428187 CCGTGTGGTTGGGCTACA 59.572 61.111 0.00 0.00 36.18 2.74
465 466 1.758592 TGTGGTTGGGCTACACTCC 59.241 57.895 0.00 0.00 33.49 3.85
466 467 0.766674 TGTGGTTGGGCTACACTCCT 60.767 55.000 0.00 0.00 33.49 3.69
467 468 0.400594 GTGGTTGGGCTACACTCCTT 59.599 55.000 0.00 0.00 32.58 3.36
468 469 1.145571 TGGTTGGGCTACACTCCTTT 58.854 50.000 0.00 0.00 0.00 3.11
469 470 1.073284 TGGTTGGGCTACACTCCTTTC 59.927 52.381 0.00 0.00 0.00 2.62
470 471 1.439679 GTTGGGCTACACTCCTTTCG 58.560 55.000 0.00 0.00 0.00 3.46
471 472 1.053424 TTGGGCTACACTCCTTTCGT 58.947 50.000 0.00 0.00 0.00 3.85
472 473 0.320374 TGGGCTACACTCCTTTCGTG 59.680 55.000 0.00 0.00 38.32 4.35
473 474 0.320697 GGGCTACACTCCTTTCGTGT 59.679 55.000 0.00 0.00 46.45 4.49
474 475 1.429463 GGCTACACTCCTTTCGTGTG 58.571 55.000 6.10 0.00 44.63 3.82
475 476 0.790814 GCTACACTCCTTTCGTGTGC 59.209 55.000 6.10 4.56 44.63 4.57
476 477 1.872237 GCTACACTCCTTTCGTGTGCA 60.872 52.381 6.10 0.00 44.63 4.57
477 478 1.792949 CTACACTCCTTTCGTGTGCAC 59.207 52.381 10.75 10.75 44.63 4.57
478 479 0.107897 ACACTCCTTTCGTGTGCACA 60.108 50.000 17.42 17.42 43.44 4.57
479 480 1.229428 CACTCCTTTCGTGTGCACAT 58.771 50.000 24.69 0.00 0.00 3.21
480 481 1.069703 CACTCCTTTCGTGTGCACATG 60.070 52.381 29.46 29.46 0.00 3.21
481 482 1.202639 ACTCCTTTCGTGTGCACATGA 60.203 47.619 32.80 32.80 39.88 3.07
482 483 1.462283 CTCCTTTCGTGTGCACATGAG 59.538 52.381 33.71 25.27 42.22 2.90
483 484 1.202639 TCCTTTCGTGTGCACATGAGT 60.203 47.619 33.71 0.00 42.22 3.41
484 485 1.603802 CCTTTCGTGTGCACATGAGTT 59.396 47.619 33.71 0.00 42.22 3.01
485 486 2.602933 CCTTTCGTGTGCACATGAGTTG 60.603 50.000 33.71 26.56 42.22 3.16
486 487 1.662517 TTCGTGTGCACATGAGTTGT 58.337 45.000 33.71 0.00 42.22 3.32
487 488 1.217001 TCGTGTGCACATGAGTTGTC 58.783 50.000 32.80 13.01 37.00 3.18
488 489 0.235665 CGTGTGCACATGAGTTGTCC 59.764 55.000 31.17 10.49 36.00 4.02
489 490 1.308047 GTGTGCACATGAGTTGTCCA 58.692 50.000 24.69 0.00 36.00 4.02
490 491 1.002468 GTGTGCACATGAGTTGTCCAC 60.002 52.381 24.69 0.91 45.62 4.02
491 492 0.235665 GTGCACATGAGTTGTCCACG 59.764 55.000 13.17 0.00 37.27 4.94
492 493 0.179059 TGCACATGAGTTGTCCACGT 60.179 50.000 0.00 0.00 36.00 4.49
493 494 0.235665 GCACATGAGTTGTCCACGTG 59.764 55.000 9.08 9.08 36.00 4.49
494 495 0.235665 CACATGAGTTGTCCACGTGC 59.764 55.000 10.91 0.00 36.00 5.34
495 496 0.179059 ACATGAGTTGTCCACGTGCA 60.179 50.000 10.91 0.00 30.89 4.57
496 497 1.159285 CATGAGTTGTCCACGTGCAT 58.841 50.000 10.91 3.24 0.00 3.96
497 498 1.536766 CATGAGTTGTCCACGTGCATT 59.463 47.619 10.91 0.00 0.00 3.56
498 499 1.674359 TGAGTTGTCCACGTGCATTT 58.326 45.000 10.91 0.00 0.00 2.32
499 500 1.333308 TGAGTTGTCCACGTGCATTTG 59.667 47.619 10.91 0.00 0.00 2.32
500 501 0.667993 AGTTGTCCACGTGCATTTGG 59.332 50.000 10.91 9.76 0.00 3.28
501 502 0.665835 GTTGTCCACGTGCATTTGGA 59.334 50.000 10.91 13.80 39.72 3.53
502 503 1.066303 GTTGTCCACGTGCATTTGGAA 59.934 47.619 18.22 8.43 43.67 3.53
503 504 0.665835 TGTCCACGTGCATTTGGAAC 59.334 50.000 18.22 13.45 43.67 3.62
504 505 0.385473 GTCCACGTGCATTTGGAACG 60.385 55.000 18.22 5.05 43.67 3.95
505 506 1.081509 CCACGTGCATTTGGAACGG 60.082 57.895 10.91 0.00 41.50 4.44
506 507 1.729131 CACGTGCATTTGGAACGGC 60.729 57.895 0.82 0.00 41.50 5.68
507 508 2.501650 CGTGCATTTGGAACGGCG 60.502 61.111 4.80 4.80 33.77 6.46
508 509 2.950673 GTGCATTTGGAACGGCGA 59.049 55.556 16.62 0.00 0.00 5.54
509 510 1.154225 GTGCATTTGGAACGGCGAG 60.154 57.895 16.62 0.00 0.00 5.03
510 511 1.302112 TGCATTTGGAACGGCGAGA 60.302 52.632 16.62 0.00 0.00 4.04
511 512 1.298157 TGCATTTGGAACGGCGAGAG 61.298 55.000 16.62 0.00 0.00 3.20
512 513 1.982073 GCATTTGGAACGGCGAGAGG 61.982 60.000 16.62 0.00 0.00 3.69
522 523 4.459089 GCGAGAGGCCTCACCCAC 62.459 72.222 33.90 15.11 40.58 4.61
523 524 3.775654 CGAGAGGCCTCACCCACC 61.776 72.222 33.90 13.99 40.58 4.61
524 525 2.607750 GAGAGGCCTCACCCACCA 60.608 66.667 33.90 0.00 40.58 4.17
525 526 2.608988 AGAGGCCTCACCCACCAG 60.609 66.667 33.90 0.00 40.58 4.00
526 527 3.721706 GAGGCCTCACCCACCAGG 61.722 72.222 28.43 0.00 40.58 4.45
536 537 3.313874 CCACCAGGGCTAGAGTGG 58.686 66.667 0.00 0.00 43.50 4.00
537 538 1.613630 CCACCAGGGCTAGAGTGGT 60.614 63.158 5.49 5.49 45.83 4.16
538 539 0.325296 CCACCAGGGCTAGAGTGGTA 60.325 60.000 9.95 0.00 42.94 3.25
539 540 1.115467 CACCAGGGCTAGAGTGGTAG 58.885 60.000 9.95 3.48 42.94 3.18
540 541 1.008403 ACCAGGGCTAGAGTGGTAGA 58.992 55.000 8.85 0.00 42.99 2.59
541 542 1.342175 ACCAGGGCTAGAGTGGTAGAC 60.342 57.143 8.85 0.00 42.99 2.59
542 543 1.025812 CAGGGCTAGAGTGGTAGACG 58.974 60.000 0.00 0.00 0.00 4.18
543 544 0.917533 AGGGCTAGAGTGGTAGACGA 59.082 55.000 0.00 0.00 0.00 4.20
544 545 1.495574 AGGGCTAGAGTGGTAGACGAT 59.504 52.381 0.00 0.00 0.00 3.73
545 546 1.609555 GGGCTAGAGTGGTAGACGATG 59.390 57.143 0.00 0.00 0.00 3.84
546 547 1.001158 GGCTAGAGTGGTAGACGATGC 60.001 57.143 0.00 0.00 0.00 3.91
547 548 1.676529 GCTAGAGTGGTAGACGATGCA 59.323 52.381 0.00 0.00 0.00 3.96
548 549 2.294791 GCTAGAGTGGTAGACGATGCAT 59.705 50.000 0.00 0.00 0.00 3.96
549 550 3.502595 GCTAGAGTGGTAGACGATGCATA 59.497 47.826 0.00 0.00 0.00 3.14
550 551 4.023107 GCTAGAGTGGTAGACGATGCATAA 60.023 45.833 0.00 0.00 0.00 1.90
551 552 4.308899 AGAGTGGTAGACGATGCATAAC 57.691 45.455 0.00 0.00 0.00 1.89
552 553 3.954904 AGAGTGGTAGACGATGCATAACT 59.045 43.478 0.00 1.97 0.00 2.24
553 554 4.402793 AGAGTGGTAGACGATGCATAACTT 59.597 41.667 0.00 0.00 0.00 2.66
554 555 4.433615 AGTGGTAGACGATGCATAACTTG 58.566 43.478 0.00 0.00 0.00 3.16
555 556 3.555956 GTGGTAGACGATGCATAACTTGG 59.444 47.826 0.00 0.00 0.00 3.61
556 557 2.544267 GGTAGACGATGCATAACTTGGC 59.456 50.000 0.00 0.00 0.00 4.52
557 558 2.401583 AGACGATGCATAACTTGGCA 57.598 45.000 0.00 0.00 45.23 4.92
558 559 2.283298 AGACGATGCATAACTTGGCAG 58.717 47.619 0.00 0.00 44.24 4.85
559 560 2.009774 GACGATGCATAACTTGGCAGT 58.990 47.619 0.00 0.00 44.24 4.40
560 561 2.420022 GACGATGCATAACTTGGCAGTT 59.580 45.455 0.00 7.34 45.73 3.16
562 563 4.006989 ACGATGCATAACTTGGCAGTTAA 58.993 39.130 0.00 0.29 46.45 2.01
563 564 4.457603 ACGATGCATAACTTGGCAGTTAAA 59.542 37.500 0.00 4.33 46.45 1.52
564 565 5.048364 ACGATGCATAACTTGGCAGTTAAAA 60.048 36.000 0.00 4.08 46.45 1.52
565 566 5.512788 CGATGCATAACTTGGCAGTTAAAAG 59.487 40.000 0.00 0.00 46.45 2.27
566 567 6.588719 ATGCATAACTTGGCAGTTAAAAGA 57.411 33.333 0.00 1.32 46.45 2.52
567 568 5.768317 TGCATAACTTGGCAGTTAAAAGAC 58.232 37.500 11.64 3.90 46.45 3.01
568 569 4.851558 GCATAACTTGGCAGTTAAAAGACG 59.148 41.667 11.64 0.00 46.45 4.18
569 570 3.982576 AACTTGGCAGTTAAAAGACGG 57.017 42.857 1.30 0.00 41.81 4.79
570 571 2.927028 ACTTGGCAGTTAAAAGACGGT 58.073 42.857 0.00 0.00 0.00 4.83
571 572 3.284617 ACTTGGCAGTTAAAAGACGGTT 58.715 40.909 0.00 0.00 0.00 4.44
572 573 3.697542 ACTTGGCAGTTAAAAGACGGTTT 59.302 39.130 0.00 0.00 0.00 3.27
573 574 3.701532 TGGCAGTTAAAAGACGGTTTG 57.298 42.857 0.00 0.00 0.00 2.93
574 575 2.223618 TGGCAGTTAAAAGACGGTTTGC 60.224 45.455 0.00 0.00 0.00 3.68
575 576 2.034179 GGCAGTTAAAAGACGGTTTGCT 59.966 45.455 0.00 0.00 0.00 3.91
576 577 3.251487 GGCAGTTAAAAGACGGTTTGCTA 59.749 43.478 0.00 0.00 0.00 3.49
583 584 8.718734 AGTTAAAAGACGGTTTGCTATTTCTAG 58.281 33.333 0.00 0.00 0.00 2.43
609 610 7.646548 AAGGGTTAATTATCCTTTTGCTCTC 57.353 36.000 11.51 0.00 37.60 3.20
617 618 0.595095 CCTTTTGCTCTCAGTGGTGC 59.405 55.000 0.00 0.00 0.00 5.01
619 620 0.183492 TTTTGCTCTCAGTGGTGCCT 59.817 50.000 0.00 0.00 0.00 4.75
620 621 0.250467 TTTGCTCTCAGTGGTGCCTC 60.250 55.000 0.00 0.00 0.00 4.70
662 664 5.986741 TCAGTTGTAATCGTGCTCAGTTTTA 59.013 36.000 0.00 0.00 0.00 1.52
787 790 0.171455 GACGATCAGACCGTTGCTCT 59.829 55.000 0.00 0.00 40.67 4.09
857 860 0.878523 GTGTGCGATATAAGCGGGCA 60.879 55.000 0.00 0.00 37.44 5.36
1171 1182 4.703897 CAGCGAGAATGGGGTAAGAATTA 58.296 43.478 0.00 0.00 0.00 1.40
1256 1268 4.724399 TGCAGGTGAAATGTTTCTTCCTA 58.276 39.130 16.15 5.97 38.81 2.94
1270 1283 4.100279 TCTTCCTATGGTCGATGCTCTA 57.900 45.455 0.00 0.00 0.00 2.43
1309 1324 2.810274 TGAACTGCAAGAAGAGCATGAC 59.190 45.455 0.00 0.00 41.82 3.06
1490 1844 7.094463 CCATTTGCAATTACTTTTGGGCATTTA 60.094 33.333 0.00 0.00 0.00 1.40
1573 1927 7.378181 TGGAGGAATTTGTAAGCTTGAAATTC 58.622 34.615 29.19 29.19 41.93 2.17
1615 1970 8.245701 TGTTTAAATGTTGGTCAAAGTTGTTC 57.754 30.769 0.00 0.00 0.00 3.18
1621 1976 8.647143 AATGTTGGTCAAAGTTGTTCAAATAG 57.353 30.769 0.00 0.00 0.00 1.73
1623 1978 8.282455 TGTTGGTCAAAGTTGTTCAAATAGTA 57.718 30.769 0.00 0.00 0.00 1.82
1733 2092 1.085893 GCTCTCTGCTCTGCCTTTTC 58.914 55.000 0.00 0.00 38.95 2.29
1734 2093 1.338960 GCTCTCTGCTCTGCCTTTTCT 60.339 52.381 0.00 0.00 38.95 2.52
1735 2094 2.348660 CTCTCTGCTCTGCCTTTTCTG 58.651 52.381 0.00 0.00 0.00 3.02
1736 2095 1.696336 TCTCTGCTCTGCCTTTTCTGT 59.304 47.619 0.00 0.00 0.00 3.41
1774 2138 0.881118 GTTGGCCAAATTCAGAGCGA 59.119 50.000 22.47 0.00 0.00 4.93
1813 2177 2.102578 GACTAATGGGCCAACTGCATT 58.897 47.619 11.89 7.27 43.89 3.56
1820 2184 2.902486 TGGGCCAACTGCATTCAATTAA 59.098 40.909 2.13 0.00 43.89 1.40
2125 2504 8.904712 GCCAAAATTAATGAACATTTTTGAAGC 58.095 29.630 17.35 12.32 32.17 3.86
2297 2679 1.840635 GACATGGCTAGGGAAGGAAGT 59.159 52.381 0.00 0.00 0.00 3.01
2365 2747 7.571613 GCATGTTTGTATTGAATGTTTGCACAT 60.572 33.333 0.00 0.00 46.34 3.21
2374 2756 1.237533 TGTTTGCACATGCGTGAGAT 58.762 45.000 14.17 0.00 46.80 2.75
2543 2927 2.213499 GATATCTTTGGGCACGGACAG 58.787 52.381 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.529309 GGAGAAGGTGATGGGCTCC 59.471 63.158 0.00 0.00 38.45 4.70
41 42 3.896133 GCGGCGGTACATCTCGGA 61.896 66.667 9.78 0.00 0.00 4.55
134 135 3.128188 CTGCTGCTGCTGCTGGAG 61.128 66.667 27.67 23.82 46.01 3.86
135 136 4.717313 CCTGCTGCTGCTGCTGGA 62.717 66.667 36.74 17.94 45.18 3.86
173 174 3.901797 GAGACTTGGTGGCGGTGGG 62.902 68.421 0.00 0.00 0.00 4.61
174 175 2.358737 GAGACTTGGTGGCGGTGG 60.359 66.667 0.00 0.00 0.00 4.61
175 176 1.374758 GAGAGACTTGGTGGCGGTG 60.375 63.158 0.00 0.00 0.00 4.94
176 177 1.407656 TTGAGAGACTTGGTGGCGGT 61.408 55.000 0.00 0.00 0.00 5.68
177 178 0.951040 GTTGAGAGACTTGGTGGCGG 60.951 60.000 0.00 0.00 0.00 6.13
178 179 1.284982 CGTTGAGAGACTTGGTGGCG 61.285 60.000 0.00 0.00 0.00 5.69
179 180 0.033504 TCGTTGAGAGACTTGGTGGC 59.966 55.000 0.00 0.00 0.00 5.01
180 181 2.526304 TTCGTTGAGAGACTTGGTGG 57.474 50.000 0.00 0.00 0.00 4.61
181 182 4.752101 AGAATTTCGTTGAGAGACTTGGTG 59.248 41.667 0.00 0.00 0.00 4.17
182 183 4.962155 AGAATTTCGTTGAGAGACTTGGT 58.038 39.130 0.00 0.00 0.00 3.67
183 184 5.683859 CAAGAATTTCGTTGAGAGACTTGG 58.316 41.667 0.00 0.00 31.83 3.61
184 185 5.142962 GCAAGAATTTCGTTGAGAGACTTG 58.857 41.667 0.00 0.00 36.39 3.16
185 186 4.214332 GGCAAGAATTTCGTTGAGAGACTT 59.786 41.667 10.73 0.00 0.00 3.01
186 187 3.748568 GGCAAGAATTTCGTTGAGAGACT 59.251 43.478 10.73 0.00 0.00 3.24
187 188 3.748568 AGGCAAGAATTTCGTTGAGAGAC 59.251 43.478 10.73 0.00 0.00 3.36
188 189 4.008074 AGGCAAGAATTTCGTTGAGAGA 57.992 40.909 10.73 0.00 0.00 3.10
189 190 5.171476 TCTAGGCAAGAATTTCGTTGAGAG 58.829 41.667 10.73 6.03 0.00 3.20
190 191 5.147330 TCTAGGCAAGAATTTCGTTGAGA 57.853 39.130 10.73 4.71 0.00 3.27
191 192 5.582269 TGATCTAGGCAAGAATTTCGTTGAG 59.418 40.000 10.73 3.11 37.89 3.02
192 193 5.487433 TGATCTAGGCAAGAATTTCGTTGA 58.513 37.500 10.73 0.00 37.89 3.18
193 194 5.801350 TGATCTAGGCAAGAATTTCGTTG 57.199 39.130 0.00 0.00 37.89 4.10
194 195 6.038714 GGAATGATCTAGGCAAGAATTTCGTT 59.961 38.462 0.00 0.00 37.89 3.85
195 196 5.529060 GGAATGATCTAGGCAAGAATTTCGT 59.471 40.000 0.00 0.00 37.89 3.85
196 197 5.333645 CGGAATGATCTAGGCAAGAATTTCG 60.334 44.000 0.00 0.00 37.89 3.46
197 198 5.049129 CCGGAATGATCTAGGCAAGAATTTC 60.049 44.000 0.00 0.00 37.89 2.17
198 199 4.823989 CCGGAATGATCTAGGCAAGAATTT 59.176 41.667 0.00 0.00 37.89 1.82
199 200 4.392940 CCGGAATGATCTAGGCAAGAATT 58.607 43.478 0.00 0.00 37.89 2.17
200 201 3.808618 GCCGGAATGATCTAGGCAAGAAT 60.809 47.826 5.05 0.00 43.72 2.40
201 202 2.485479 GCCGGAATGATCTAGGCAAGAA 60.485 50.000 5.05 0.00 43.72 2.52
202 203 1.070758 GCCGGAATGATCTAGGCAAGA 59.929 52.381 5.05 0.00 43.72 3.02
203 204 1.517242 GCCGGAATGATCTAGGCAAG 58.483 55.000 5.05 0.00 43.72 4.01
204 205 0.249868 CGCCGGAATGATCTAGGCAA 60.250 55.000 5.05 0.00 44.14 4.52
205 206 1.367471 CGCCGGAATGATCTAGGCA 59.633 57.895 5.05 0.00 44.14 4.75
206 207 1.374758 CCGCCGGAATGATCTAGGC 60.375 63.158 5.05 1.07 42.12 3.93
207 208 1.293498 CCCGCCGGAATGATCTAGG 59.707 63.158 5.05 0.00 0.00 3.02
208 209 1.293498 CCCCGCCGGAATGATCTAG 59.707 63.158 5.05 0.00 0.00 2.43
209 210 2.879233 GCCCCGCCGGAATGATCTA 61.879 63.158 5.05 0.00 0.00 1.98
210 211 4.256180 GCCCCGCCGGAATGATCT 62.256 66.667 5.05 0.00 0.00 2.75
222 223 0.591170 AAATATTGAATCGCGCCCCG 59.409 50.000 0.00 0.00 38.61 5.73
223 224 1.606668 TGAAATATTGAATCGCGCCCC 59.393 47.619 0.00 0.00 0.00 5.80
224 225 3.347958 TTGAAATATTGAATCGCGCCC 57.652 42.857 0.00 0.00 0.00 6.13
225 226 4.975502 TCAATTGAAATATTGAATCGCGCC 59.024 37.500 5.45 0.00 40.55 6.53
226 227 6.680055 ATCAATTGAAATATTGAATCGCGC 57.320 33.333 13.09 0.00 44.96 6.86
233 234 9.247126 CCACGCATTAATCAATTGAAATATTGA 57.753 29.630 13.09 0.00 45.64 2.57
234 235 8.489559 CCCACGCATTAATCAATTGAAATATTG 58.510 33.333 13.09 14.61 36.95 1.90
235 236 8.420222 TCCCACGCATTAATCAATTGAAATATT 58.580 29.630 13.09 4.74 0.00 1.28
236 237 7.950512 TCCCACGCATTAATCAATTGAAATAT 58.049 30.769 13.09 3.16 0.00 1.28
237 238 7.340122 TCCCACGCATTAATCAATTGAAATA 57.660 32.000 13.09 6.25 0.00 1.40
238 239 6.219417 TCCCACGCATTAATCAATTGAAAT 57.781 33.333 13.09 5.89 0.00 2.17
239 240 5.651387 TCCCACGCATTAATCAATTGAAA 57.349 34.783 13.09 3.45 0.00 2.69
240 241 5.850557 ATCCCACGCATTAATCAATTGAA 57.149 34.783 13.09 0.00 0.00 2.69
241 242 5.850557 AATCCCACGCATTAATCAATTGA 57.149 34.783 11.26 11.26 0.00 2.57
242 243 6.041511 TCAAATCCCACGCATTAATCAATTG 58.958 36.000 0.00 0.00 0.00 2.32
243 244 6.219417 TCAAATCCCACGCATTAATCAATT 57.781 33.333 0.00 0.00 0.00 2.32
244 245 5.850557 TCAAATCCCACGCATTAATCAAT 57.149 34.783 0.00 0.00 0.00 2.57
245 246 5.850557 ATCAAATCCCACGCATTAATCAA 57.149 34.783 0.00 0.00 0.00 2.57
246 247 5.593909 AGAATCAAATCCCACGCATTAATCA 59.406 36.000 0.00 0.00 0.00 2.57
247 248 6.076981 AGAATCAAATCCCACGCATTAATC 57.923 37.500 0.00 0.00 0.00 1.75
248 249 5.010012 GGAGAATCAAATCCCACGCATTAAT 59.990 40.000 0.00 0.00 36.25 1.40
249 250 4.338118 GGAGAATCAAATCCCACGCATTAA 59.662 41.667 0.00 0.00 36.25 1.40
250 251 3.882888 GGAGAATCAAATCCCACGCATTA 59.117 43.478 0.00 0.00 36.25 1.90
251 252 2.689983 GGAGAATCAAATCCCACGCATT 59.310 45.455 0.00 0.00 36.25 3.56
252 253 2.092212 AGGAGAATCAAATCCCACGCAT 60.092 45.455 0.00 0.00 36.14 4.73
253 254 1.281867 AGGAGAATCAAATCCCACGCA 59.718 47.619 0.00 0.00 36.14 5.24
254 255 2.044123 AGGAGAATCAAATCCCACGC 57.956 50.000 0.00 0.00 36.14 5.34
255 256 4.770795 ACTTAGGAGAATCAAATCCCACG 58.229 43.478 0.00 0.00 36.14 4.94
256 257 5.753921 CGTACTTAGGAGAATCAAATCCCAC 59.246 44.000 0.00 0.00 36.14 4.61
257 258 5.659525 TCGTACTTAGGAGAATCAAATCCCA 59.340 40.000 0.00 0.00 36.14 4.37
258 259 6.040616 TCTCGTACTTAGGAGAATCAAATCCC 59.959 42.308 6.26 0.00 42.29 3.85
259 260 7.040473 TCTCGTACTTAGGAGAATCAAATCC 57.960 40.000 6.26 0.00 42.29 3.01
267 268 9.909644 GCATAATTTATCTCGTACTTAGGAGAA 57.090 33.333 11.60 0.00 46.37 2.87
269 270 9.862371 ATGCATAATTTATCTCGTACTTAGGAG 57.138 33.333 0.00 0.35 39.02 3.69
274 275 9.944376 ACCATATGCATAATTTATCTCGTACTT 57.056 29.630 11.13 0.00 0.00 2.24
278 279 9.547753 GGATACCATATGCATAATTTATCTCGT 57.452 33.333 11.13 0.00 0.00 4.18
279 280 8.703336 CGGATACCATATGCATAATTTATCTCG 58.297 37.037 11.13 15.17 0.00 4.04
280 281 9.547753 ACGGATACCATATGCATAATTTATCTC 57.452 33.333 11.13 9.24 0.00 2.75
283 284 9.256477 CGTACGGATACCATATGCATAATTTAT 57.744 33.333 11.13 7.20 0.00 1.40
284 285 8.252417 ACGTACGGATACCATATGCATAATTTA 58.748 33.333 21.06 2.47 0.00 1.40
285 286 7.064134 CACGTACGGATACCATATGCATAATTT 59.936 37.037 21.06 0.11 0.00 1.82
286 287 6.533723 CACGTACGGATACCATATGCATAATT 59.466 38.462 21.06 0.48 0.00 1.40
287 288 6.040247 CACGTACGGATACCATATGCATAAT 58.960 40.000 21.06 0.00 0.00 1.28
288 289 5.047872 ACACGTACGGATACCATATGCATAA 60.048 40.000 21.06 0.00 0.00 1.90
289 290 4.460034 ACACGTACGGATACCATATGCATA 59.540 41.667 21.06 9.27 0.00 3.14
290 291 3.257375 ACACGTACGGATACCATATGCAT 59.743 43.478 21.06 3.79 0.00 3.96
291 292 2.624364 ACACGTACGGATACCATATGCA 59.376 45.455 21.06 0.00 0.00 3.96
292 293 2.984471 CACACGTACGGATACCATATGC 59.016 50.000 21.06 0.00 0.00 3.14
293 294 4.233123 ACACACGTACGGATACCATATG 57.767 45.455 21.06 7.67 0.00 1.78
294 295 4.083110 GCTACACACGTACGGATACCATAT 60.083 45.833 21.06 0.00 0.00 1.78
295 296 3.250762 GCTACACACGTACGGATACCATA 59.749 47.826 21.06 1.86 0.00 2.74
296 297 2.033801 GCTACACACGTACGGATACCAT 59.966 50.000 21.06 0.68 0.00 3.55
297 298 1.401552 GCTACACACGTACGGATACCA 59.598 52.381 21.06 0.00 0.00 3.25
298 299 1.401552 TGCTACACACGTACGGATACC 59.598 52.381 21.06 2.19 0.00 2.73
299 300 2.540361 CCTGCTACACACGTACGGATAC 60.540 54.545 21.06 2.73 0.00 2.24
300 301 1.672363 CCTGCTACACACGTACGGATA 59.328 52.381 21.06 5.16 0.00 2.59
301 302 0.454600 CCTGCTACACACGTACGGAT 59.545 55.000 21.06 3.70 0.00 4.18
302 303 1.588824 CCCTGCTACACACGTACGGA 61.589 60.000 21.06 0.00 0.00 4.69
303 304 1.153901 CCCTGCTACACACGTACGG 60.154 63.158 21.06 11.05 0.00 4.02
304 305 0.179171 CTCCCTGCTACACACGTACG 60.179 60.000 15.01 15.01 0.00 3.67
305 306 0.172803 CCTCCCTGCTACACACGTAC 59.827 60.000 0.00 0.00 0.00 3.67
306 307 0.038599 TCCTCCCTGCTACACACGTA 59.961 55.000 0.00 0.00 0.00 3.57
307 308 1.228769 TCCTCCCTGCTACACACGT 60.229 57.895 0.00 0.00 0.00 4.49
308 309 1.513158 CTCCTCCCTGCTACACACG 59.487 63.158 0.00 0.00 0.00 4.49
309 310 1.219393 GCTCCTCCCTGCTACACAC 59.781 63.158 0.00 0.00 0.00 3.82
310 311 0.972983 GAGCTCCTCCCTGCTACACA 60.973 60.000 0.87 0.00 39.91 3.72
311 312 1.819905 GAGCTCCTCCCTGCTACAC 59.180 63.158 0.87 0.00 39.91 2.90
312 313 1.754621 CGAGCTCCTCCCTGCTACA 60.755 63.158 8.47 0.00 39.91 2.74
313 314 1.454111 TCGAGCTCCTCCCTGCTAC 60.454 63.158 8.47 0.00 39.91 3.58
314 315 1.454111 GTCGAGCTCCTCCCTGCTA 60.454 63.158 8.47 0.00 39.91 3.49
315 316 2.757917 GTCGAGCTCCTCCCTGCT 60.758 66.667 8.47 0.00 42.82 4.24
316 317 3.844090 GGTCGAGCTCCTCCCTGC 61.844 72.222 8.47 0.00 0.00 4.85
317 318 2.043450 AGGTCGAGCTCCTCCCTG 60.043 66.667 12.24 0.00 0.00 4.45
318 319 1.572689 TACAGGTCGAGCTCCTCCCT 61.573 60.000 15.54 7.89 32.37 4.20
319 320 0.683504 TTACAGGTCGAGCTCCTCCC 60.684 60.000 15.54 5.49 32.37 4.30
320 321 1.404843 ATTACAGGTCGAGCTCCTCC 58.595 55.000 15.54 10.79 32.37 4.30
321 322 4.038162 ACATTATTACAGGTCGAGCTCCTC 59.962 45.833 15.54 0.92 32.37 3.71
322 323 3.961408 ACATTATTACAGGTCGAGCTCCT 59.039 43.478 15.54 5.34 35.45 3.69
323 324 4.299978 GACATTATTACAGGTCGAGCTCC 58.700 47.826 15.54 0.00 0.00 4.70
330 331 3.000078 CACGCACGACATTATTACAGGTC 60.000 47.826 0.00 0.00 0.00 3.85
331 332 2.927477 CACGCACGACATTATTACAGGT 59.073 45.455 0.00 0.00 0.00 4.00
332 333 2.284150 CCACGCACGACATTATTACAGG 59.716 50.000 0.00 0.00 0.00 4.00
333 334 3.183754 TCCACGCACGACATTATTACAG 58.816 45.455 0.00 0.00 0.00 2.74
334 335 3.233684 TCCACGCACGACATTATTACA 57.766 42.857 0.00 0.00 0.00 2.41
335 336 3.615496 AGTTCCACGCACGACATTATTAC 59.385 43.478 0.00 0.00 0.00 1.89
336 337 3.615056 CAGTTCCACGCACGACATTATTA 59.385 43.478 0.00 0.00 0.00 0.98
337 338 2.415168 CAGTTCCACGCACGACATTATT 59.585 45.455 0.00 0.00 0.00 1.40
338 339 1.999735 CAGTTCCACGCACGACATTAT 59.000 47.619 0.00 0.00 0.00 1.28
339 340 1.000052 TCAGTTCCACGCACGACATTA 60.000 47.619 0.00 0.00 0.00 1.90
340 341 0.249699 TCAGTTCCACGCACGACATT 60.250 50.000 0.00 0.00 0.00 2.71
341 342 0.249699 TTCAGTTCCACGCACGACAT 60.250 50.000 0.00 0.00 0.00 3.06
342 343 1.142097 TTCAGTTCCACGCACGACA 59.858 52.632 0.00 0.00 0.00 4.35
343 344 1.563173 GTTCAGTTCCACGCACGAC 59.437 57.895 0.00 0.00 0.00 4.34
344 345 1.593209 GGTTCAGTTCCACGCACGA 60.593 57.895 0.00 0.00 0.00 4.35
345 346 2.935955 GGTTCAGTTCCACGCACG 59.064 61.111 0.00 0.00 0.00 5.34
346 347 1.557443 CTCGGTTCAGTTCCACGCAC 61.557 60.000 0.00 0.00 0.00 5.34
347 348 1.300620 CTCGGTTCAGTTCCACGCA 60.301 57.895 0.00 0.00 0.00 5.24
348 349 2.668280 GCTCGGTTCAGTTCCACGC 61.668 63.158 0.00 0.00 0.00 5.34
349 350 0.242825 TAGCTCGGTTCAGTTCCACG 59.757 55.000 0.00 0.00 0.00 4.94
350 351 2.288886 ACTTAGCTCGGTTCAGTTCCAC 60.289 50.000 0.00 0.00 0.00 4.02
351 352 1.968493 ACTTAGCTCGGTTCAGTTCCA 59.032 47.619 0.00 0.00 0.00 3.53
352 353 2.745515 ACTTAGCTCGGTTCAGTTCC 57.254 50.000 0.00 0.00 0.00 3.62
353 354 4.082354 TCCTTACTTAGCTCGGTTCAGTTC 60.082 45.833 0.00 0.00 0.00 3.01
354 355 3.830755 TCCTTACTTAGCTCGGTTCAGTT 59.169 43.478 0.00 0.00 0.00 3.16
355 356 3.428532 TCCTTACTTAGCTCGGTTCAGT 58.571 45.455 0.00 0.00 0.00 3.41
356 357 3.735514 GCTCCTTACTTAGCTCGGTTCAG 60.736 52.174 0.00 0.00 35.80 3.02
357 358 2.165845 GCTCCTTACTTAGCTCGGTTCA 59.834 50.000 0.00 0.00 35.80 3.18
358 359 2.427812 AGCTCCTTACTTAGCTCGGTTC 59.572 50.000 0.00 0.00 45.92 3.62
359 360 2.458620 AGCTCCTTACTTAGCTCGGTT 58.541 47.619 0.00 0.00 45.92 4.44
360 361 2.146920 AGCTCCTTACTTAGCTCGGT 57.853 50.000 0.00 0.00 45.92 4.69
361 362 3.120130 CGATAGCTCCTTACTTAGCTCGG 60.120 52.174 0.00 0.00 45.92 4.63
362 363 3.499157 ACGATAGCTCCTTACTTAGCTCG 59.501 47.826 0.00 2.63 45.92 5.03
363 364 4.515944 TCACGATAGCTCCTTACTTAGCTC 59.484 45.833 0.00 0.00 45.92 4.09
365 366 4.276431 ACTCACGATAGCTCCTTACTTAGC 59.724 45.833 0.00 0.00 42.67 3.09
366 367 6.380095 AACTCACGATAGCTCCTTACTTAG 57.620 41.667 0.00 0.00 42.67 2.18
367 368 6.405508 CCAAACTCACGATAGCTCCTTACTTA 60.406 42.308 0.00 0.00 42.67 2.24
368 369 5.411781 CAAACTCACGATAGCTCCTTACTT 58.588 41.667 0.00 0.00 42.67 2.24
369 370 4.142138 CCAAACTCACGATAGCTCCTTACT 60.142 45.833 0.00 0.00 42.67 2.24
370 371 4.113354 CCAAACTCACGATAGCTCCTTAC 58.887 47.826 0.00 0.00 42.67 2.34
371 372 3.430374 GCCAAACTCACGATAGCTCCTTA 60.430 47.826 0.00 0.00 42.67 2.69
372 373 2.678190 GCCAAACTCACGATAGCTCCTT 60.678 50.000 0.00 0.00 42.67 3.36
373 374 1.134670 GCCAAACTCACGATAGCTCCT 60.135 52.381 0.00 0.00 42.67 3.69
374 375 1.291132 GCCAAACTCACGATAGCTCC 58.709 55.000 0.00 0.00 42.67 4.70
375 376 0.924090 CGCCAAACTCACGATAGCTC 59.076 55.000 0.00 0.00 42.67 4.09
376 377 0.246635 ACGCCAAACTCACGATAGCT 59.753 50.000 0.00 0.00 42.67 3.32
377 378 0.370273 CACGCCAAACTCACGATAGC 59.630 55.000 0.00 0.00 42.67 2.97
378 379 1.390123 CACACGCCAAACTCACGATAG 59.610 52.381 0.00 0.00 46.19 2.08
379 380 1.424403 CACACGCCAAACTCACGATA 58.576 50.000 0.00 0.00 0.00 2.92
380 381 1.841663 GCACACGCCAAACTCACGAT 61.842 55.000 0.00 0.00 0.00 3.73
381 382 2.530497 GCACACGCCAAACTCACGA 61.530 57.895 0.00 0.00 0.00 4.35
382 383 2.052237 GCACACGCCAAACTCACG 60.052 61.111 0.00 0.00 0.00 4.35
383 384 1.009675 CTGCACACGCCAAACTCAC 60.010 57.895 0.00 0.00 37.32 3.51
384 385 0.746204 TTCTGCACACGCCAAACTCA 60.746 50.000 0.00 0.00 37.32 3.41
385 386 0.380378 TTTCTGCACACGCCAAACTC 59.620 50.000 0.00 0.00 37.32 3.01
386 387 1.032014 ATTTCTGCACACGCCAAACT 58.968 45.000 0.00 0.00 37.32 2.66
387 388 2.697431 TATTTCTGCACACGCCAAAC 57.303 45.000 0.00 0.00 37.32 2.93
388 389 3.181501 GCTATATTTCTGCACACGCCAAA 60.182 43.478 0.00 0.00 37.32 3.28
389 390 2.354510 GCTATATTTCTGCACACGCCAA 59.645 45.455 0.00 0.00 37.32 4.52
390 391 1.939934 GCTATATTTCTGCACACGCCA 59.060 47.619 0.00 0.00 37.32 5.69
391 392 1.070577 CGCTATATTTCTGCACACGCC 60.071 52.381 0.00 0.00 37.32 5.68
392 393 1.593006 ACGCTATATTTCTGCACACGC 59.407 47.619 0.00 0.00 39.24 5.34
393 394 6.871044 ATATACGCTATATTTCTGCACACG 57.129 37.500 0.00 0.00 0.00 4.49
403 404 9.918630 AAACCAGTACGAAATATACGCTATATT 57.081 29.630 0.00 5.13 41.75 1.28
404 405 9.565213 GAAACCAGTACGAAATATACGCTATAT 57.435 33.333 0.00 0.00 32.90 0.86
405 406 8.786898 AGAAACCAGTACGAAATATACGCTATA 58.213 33.333 0.00 0.00 0.00 1.31
406 407 7.594015 CAGAAACCAGTACGAAATATACGCTAT 59.406 37.037 0.00 0.00 0.00 2.97
407 408 6.914215 CAGAAACCAGTACGAAATATACGCTA 59.086 38.462 0.00 0.00 0.00 4.26
408 409 5.747197 CAGAAACCAGTACGAAATATACGCT 59.253 40.000 0.00 0.00 0.00 5.07
409 410 5.517770 ACAGAAACCAGTACGAAATATACGC 59.482 40.000 0.00 0.00 0.00 4.42
410 411 7.515957 AACAGAAACCAGTACGAAATATACG 57.484 36.000 0.00 0.00 0.00 3.06
414 415 9.369904 GGTTATAACAGAAACCAGTACGAAATA 57.630 33.333 17.16 0.00 43.84 1.40
415 416 7.335171 GGGTTATAACAGAAACCAGTACGAAAT 59.665 37.037 17.16 0.00 45.79 2.17
416 417 6.650390 GGGTTATAACAGAAACCAGTACGAAA 59.350 38.462 17.16 0.00 45.79 3.46
417 418 6.165577 GGGTTATAACAGAAACCAGTACGAA 58.834 40.000 17.16 0.00 45.79 3.85
418 419 5.245751 TGGGTTATAACAGAAACCAGTACGA 59.754 40.000 17.16 0.00 45.79 3.43
419 420 5.481105 TGGGTTATAACAGAAACCAGTACG 58.519 41.667 17.16 0.00 45.79 3.67
424 425 3.692690 GGCTGGGTTATAACAGAAACCA 58.307 45.455 17.16 12.80 45.79 3.67
425 426 2.681344 CGGCTGGGTTATAACAGAAACC 59.319 50.000 17.16 9.05 43.70 3.27
426 427 3.126343 CACGGCTGGGTTATAACAGAAAC 59.874 47.826 17.16 3.82 36.86 2.78
427 428 3.244630 ACACGGCTGGGTTATAACAGAAA 60.245 43.478 17.16 0.00 36.86 2.52
428 429 2.303600 ACACGGCTGGGTTATAACAGAA 59.696 45.455 17.16 1.51 36.86 3.02
429 430 1.903860 ACACGGCTGGGTTATAACAGA 59.096 47.619 17.16 2.18 36.86 3.41
430 431 2.006888 CACACGGCTGGGTTATAACAG 58.993 52.381 17.16 8.14 37.76 3.16
431 432 1.339247 CCACACGGCTGGGTTATAACA 60.339 52.381 17.16 0.00 0.00 2.41
432 433 1.339342 ACCACACGGCTGGGTTATAAC 60.339 52.381 0.00 7.09 35.34 1.89
433 434 0.985760 ACCACACGGCTGGGTTATAA 59.014 50.000 0.00 0.00 35.34 0.98
434 435 0.985760 AACCACACGGCTGGGTTATA 59.014 50.000 0.00 0.00 42.84 0.98
435 436 0.608035 CAACCACACGGCTGGGTTAT 60.608 55.000 0.00 0.00 42.78 1.89
436 437 1.228003 CAACCACACGGCTGGGTTA 60.228 57.895 0.00 0.00 42.78 2.85
437 438 2.518349 CAACCACACGGCTGGGTT 60.518 61.111 0.00 0.00 45.42 4.11
438 439 4.579384 CCAACCACACGGCTGGGT 62.579 66.667 0.00 0.00 43.86 4.51
443 444 3.053896 GTAGCCCAACCACACGGC 61.054 66.667 0.00 0.00 43.35 5.68
444 445 1.964373 GTGTAGCCCAACCACACGG 60.964 63.158 0.00 0.00 33.87 4.94
445 446 0.949105 GAGTGTAGCCCAACCACACG 60.949 60.000 0.00 0.00 45.64 4.49
446 447 0.605589 GGAGTGTAGCCCAACCACAC 60.606 60.000 0.00 0.00 42.27 3.82
447 448 0.766674 AGGAGTGTAGCCCAACCACA 60.767 55.000 0.00 0.00 0.00 4.17
448 449 0.400594 AAGGAGTGTAGCCCAACCAC 59.599 55.000 0.00 0.00 0.00 4.16
449 450 1.073284 GAAAGGAGTGTAGCCCAACCA 59.927 52.381 0.00 0.00 0.00 3.67
450 451 1.822506 GAAAGGAGTGTAGCCCAACC 58.177 55.000 0.00 0.00 0.00 3.77
451 452 1.270678 ACGAAAGGAGTGTAGCCCAAC 60.271 52.381 0.00 0.00 0.00 3.77
452 453 1.053424 ACGAAAGGAGTGTAGCCCAA 58.947 50.000 0.00 0.00 0.00 4.12
453 454 0.320374 CACGAAAGGAGTGTAGCCCA 59.680 55.000 0.00 0.00 35.08 5.36
454 455 3.139029 CACGAAAGGAGTGTAGCCC 57.861 57.895 0.00 0.00 35.08 5.19
460 461 1.069703 CATGTGCACACGAAAGGAGTG 60.070 52.381 24.37 9.40 44.57 3.51
461 462 1.202639 TCATGTGCACACGAAAGGAGT 60.203 47.619 24.37 0.00 0.00 3.85
462 463 1.462283 CTCATGTGCACACGAAAGGAG 59.538 52.381 24.37 16.89 0.00 3.69
463 464 1.202639 ACTCATGTGCACACGAAAGGA 60.203 47.619 24.37 11.68 0.00 3.36
464 465 1.229428 ACTCATGTGCACACGAAAGG 58.771 50.000 24.37 10.50 0.00 3.11
465 466 2.032054 ACAACTCATGTGCACACGAAAG 59.968 45.455 24.37 18.21 41.93 2.62
466 467 2.013400 ACAACTCATGTGCACACGAAA 58.987 42.857 24.37 6.90 41.93 3.46
467 468 1.597195 GACAACTCATGTGCACACGAA 59.403 47.619 24.37 9.59 44.12 3.85
468 469 1.217001 GACAACTCATGTGCACACGA 58.783 50.000 24.37 19.74 44.12 4.35
469 470 3.734683 GACAACTCATGTGCACACG 57.265 52.632 24.37 15.63 44.12 4.49
477 478 1.159285 ATGCACGTGGACAACTCATG 58.841 50.000 18.88 0.00 0.00 3.07
478 479 1.896220 AATGCACGTGGACAACTCAT 58.104 45.000 18.88 7.21 0.00 2.90
479 480 1.333308 CAAATGCACGTGGACAACTCA 59.667 47.619 18.88 4.87 0.00 3.41
480 481 1.334960 CCAAATGCACGTGGACAACTC 60.335 52.381 18.88 0.00 37.03 3.01
481 482 0.667993 CCAAATGCACGTGGACAACT 59.332 50.000 18.88 0.00 37.03 3.16
482 483 0.665835 TCCAAATGCACGTGGACAAC 59.334 50.000 18.88 0.00 39.04 3.32
483 484 1.066303 GTTCCAAATGCACGTGGACAA 59.934 47.619 18.88 4.12 43.67 3.18
484 485 0.665835 GTTCCAAATGCACGTGGACA 59.334 50.000 18.88 8.09 43.67 4.02
485 486 0.385473 CGTTCCAAATGCACGTGGAC 60.385 55.000 18.88 12.49 43.67 4.02
486 487 1.511318 CCGTTCCAAATGCACGTGGA 61.511 55.000 18.88 16.39 42.27 4.02
487 488 1.081509 CCGTTCCAAATGCACGTGG 60.082 57.895 18.88 10.67 36.13 4.94
488 489 1.729131 GCCGTTCCAAATGCACGTG 60.729 57.895 12.28 12.28 31.83 4.49
489 490 2.642700 GCCGTTCCAAATGCACGT 59.357 55.556 0.00 0.00 31.83 4.49
490 491 2.501650 CGCCGTTCCAAATGCACG 60.502 61.111 0.00 0.00 0.00 5.34
491 492 1.154225 CTCGCCGTTCCAAATGCAC 60.154 57.895 0.00 0.00 0.00 4.57
492 493 1.298157 CTCTCGCCGTTCCAAATGCA 61.298 55.000 0.00 0.00 0.00 3.96
493 494 1.425428 CTCTCGCCGTTCCAAATGC 59.575 57.895 0.00 0.00 0.00 3.56
494 495 1.982073 GCCTCTCGCCGTTCCAAATG 61.982 60.000 0.00 0.00 0.00 2.32
495 496 1.745489 GCCTCTCGCCGTTCCAAAT 60.745 57.895 0.00 0.00 0.00 2.32
496 497 2.358247 GCCTCTCGCCGTTCCAAA 60.358 61.111 0.00 0.00 0.00 3.28
505 506 4.459089 GTGGGTGAGGCCTCTCGC 62.459 72.222 33.37 33.37 46.70 5.03
506 507 3.775654 GGTGGGTGAGGCCTCTCG 61.776 72.222 32.28 0.00 42.79 4.04
507 508 2.607750 TGGTGGGTGAGGCCTCTC 60.608 66.667 32.28 27.97 40.36 3.20
508 509 2.608988 CTGGTGGGTGAGGCCTCT 60.609 66.667 32.28 0.00 37.43 3.69
509 510 3.721706 CCTGGTGGGTGAGGCCTC 61.722 72.222 26.78 26.78 37.43 4.70
519 520 3.313874 CCACTCTAGCCCTGGTGG 58.686 66.667 0.00 0.00 42.29 4.61
520 521 1.115467 CTACCACTCTAGCCCTGGTG 58.885 60.000 13.34 4.99 38.78 4.17
521 522 1.008403 TCTACCACTCTAGCCCTGGT 58.992 55.000 9.83 9.83 41.36 4.00
522 523 1.404843 GTCTACCACTCTAGCCCTGG 58.595 60.000 0.00 0.00 0.00 4.45
523 524 1.025812 CGTCTACCACTCTAGCCCTG 58.974 60.000 0.00 0.00 0.00 4.45
524 525 0.917533 TCGTCTACCACTCTAGCCCT 59.082 55.000 0.00 0.00 0.00 5.19
525 526 1.609555 CATCGTCTACCACTCTAGCCC 59.390 57.143 0.00 0.00 0.00 5.19
526 527 1.001158 GCATCGTCTACCACTCTAGCC 60.001 57.143 0.00 0.00 0.00 3.93
527 528 1.676529 TGCATCGTCTACCACTCTAGC 59.323 52.381 0.00 0.00 0.00 3.42
528 529 5.239744 AGTTATGCATCGTCTACCACTCTAG 59.760 44.000 0.19 0.00 0.00 2.43
529 530 5.131067 AGTTATGCATCGTCTACCACTCTA 58.869 41.667 0.19 0.00 0.00 2.43
530 531 3.954904 AGTTATGCATCGTCTACCACTCT 59.045 43.478 0.19 0.00 0.00 3.24
531 532 4.308899 AGTTATGCATCGTCTACCACTC 57.691 45.455 0.19 0.00 0.00 3.51
532 533 4.433615 CAAGTTATGCATCGTCTACCACT 58.566 43.478 0.19 0.00 0.00 4.00
533 534 3.555956 CCAAGTTATGCATCGTCTACCAC 59.444 47.826 0.19 0.00 0.00 4.16
534 535 3.792401 CCAAGTTATGCATCGTCTACCA 58.208 45.455 0.19 0.00 0.00 3.25
535 536 2.544267 GCCAAGTTATGCATCGTCTACC 59.456 50.000 0.19 0.00 0.00 3.18
536 537 3.194861 TGCCAAGTTATGCATCGTCTAC 58.805 45.455 0.19 0.00 31.31 2.59
537 538 3.118775 ACTGCCAAGTTATGCATCGTCTA 60.119 43.478 0.19 0.00 36.79 2.59
538 539 2.283298 CTGCCAAGTTATGCATCGTCT 58.717 47.619 0.19 0.00 36.79 4.18
539 540 2.009774 ACTGCCAAGTTATGCATCGTC 58.990 47.619 0.19 0.00 36.79 4.20
540 541 2.113860 ACTGCCAAGTTATGCATCGT 57.886 45.000 0.19 0.00 36.79 3.73
541 542 4.614555 TTAACTGCCAAGTTATGCATCG 57.385 40.909 0.19 0.00 45.93 3.84
542 543 6.528072 GTCTTTTAACTGCCAAGTTATGCATC 59.472 38.462 0.19 0.00 45.93 3.91
543 544 6.389906 GTCTTTTAACTGCCAAGTTATGCAT 58.610 36.000 3.79 3.79 45.93 3.96
544 545 5.561919 CGTCTTTTAACTGCCAAGTTATGCA 60.562 40.000 0.00 0.00 45.93 3.96
545 546 4.851558 CGTCTTTTAACTGCCAAGTTATGC 59.148 41.667 0.00 0.00 45.93 3.14
546 547 5.048991 ACCGTCTTTTAACTGCCAAGTTATG 60.049 40.000 0.00 0.00 45.93 1.90
547 548 5.067954 ACCGTCTTTTAACTGCCAAGTTAT 58.932 37.500 0.00 0.00 45.93 1.89
548 549 4.453751 ACCGTCTTTTAACTGCCAAGTTA 58.546 39.130 0.00 0.00 45.01 2.24
550 551 2.927028 ACCGTCTTTTAACTGCCAAGT 58.073 42.857 0.00 0.00 38.71 3.16
551 552 3.982576 AACCGTCTTTTAACTGCCAAG 57.017 42.857 0.00 0.00 0.00 3.61
552 553 3.735514 GCAAACCGTCTTTTAACTGCCAA 60.736 43.478 0.00 0.00 0.00 4.52
553 554 2.223618 GCAAACCGTCTTTTAACTGCCA 60.224 45.455 0.00 0.00 0.00 4.92
554 555 2.034179 AGCAAACCGTCTTTTAACTGCC 59.966 45.455 0.00 0.00 0.00 4.85
555 556 3.349488 AGCAAACCGTCTTTTAACTGC 57.651 42.857 0.00 0.00 0.00 4.40
556 557 7.360361 AGAAATAGCAAACCGTCTTTTAACTG 58.640 34.615 0.00 0.00 0.00 3.16
557 558 7.506328 AGAAATAGCAAACCGTCTTTTAACT 57.494 32.000 0.00 0.00 0.00 2.24
558 559 8.715088 TCTAGAAATAGCAAACCGTCTTTTAAC 58.285 33.333 0.00 0.00 0.00 2.01
559 560 8.836268 TCTAGAAATAGCAAACCGTCTTTTAA 57.164 30.769 0.00 0.00 0.00 1.52
560 561 8.836268 TTCTAGAAATAGCAAACCGTCTTTTA 57.164 30.769 1.68 0.00 0.00 1.52
561 562 7.739498 TTCTAGAAATAGCAAACCGTCTTTT 57.261 32.000 1.68 0.00 0.00 2.27
562 563 7.094762 CCTTTCTAGAAATAGCAAACCGTCTTT 60.095 37.037 18.02 0.00 0.00 2.52
563 564 6.371825 CCTTTCTAGAAATAGCAAACCGTCTT 59.628 38.462 18.02 0.00 0.00 3.01
564 565 5.875359 CCTTTCTAGAAATAGCAAACCGTCT 59.125 40.000 18.02 0.00 0.00 4.18
565 566 5.064834 CCCTTTCTAGAAATAGCAAACCGTC 59.935 44.000 18.02 0.00 0.00 4.79
566 567 4.941873 CCCTTTCTAGAAATAGCAAACCGT 59.058 41.667 18.02 0.00 0.00 4.83
567 568 4.941873 ACCCTTTCTAGAAATAGCAAACCG 59.058 41.667 18.02 3.69 0.00 4.44
568 569 6.835819 AACCCTTTCTAGAAATAGCAAACC 57.164 37.500 18.02 0.00 0.00 3.27
583 584 8.067751 AGAGCAAAAGGATAATTAACCCTTTC 57.932 34.615 23.97 16.96 46.29 2.62
609 610 1.670406 GAGCACAGAGGCACCACTG 60.670 63.158 11.96 11.96 38.72 3.66
617 618 0.595095 GGCAAAACTGAGCACAGAGG 59.405 55.000 18.54 5.16 46.03 3.69
619 620 0.183492 AGGGCAAAACTGAGCACAGA 59.817 50.000 18.54 0.00 46.03 3.41
662 664 1.982938 GTGCGGACAGACTAGGGGT 60.983 63.158 0.63 0.00 0.00 4.95
758 761 0.651031 TCTGATCGTCTAGTGCGTCG 59.349 55.000 8.71 0.00 0.00 5.12
764 767 1.132643 GCAACGGTCTGATCGTCTAGT 59.867 52.381 17.19 0.00 40.18 2.57
787 790 3.948719 GGGTCCCACAAGCCACGA 61.949 66.667 1.78 0.00 36.78 4.35
844 847 3.321497 CTCTCTGTTGCCCGCTTATATC 58.679 50.000 0.00 0.00 0.00 1.63
857 860 3.303135 TCACCGCCGCTCTCTGTT 61.303 61.111 0.00 0.00 0.00 3.16
882 889 2.676822 TCGCCCGCTCTCTCTGTT 60.677 61.111 0.00 0.00 0.00 3.16
999 1010 2.275318 CGGGAGCTTGAAGAAGACATC 58.725 52.381 0.00 0.00 0.00 3.06
1060 1071 1.405463 CCATGGACAGACGAAGATCGA 59.595 52.381 5.56 0.00 43.74 3.59
1062 1073 2.544685 CACCATGGACAGACGAAGATC 58.455 52.381 21.47 0.00 0.00 2.75
1171 1182 1.338011 CGAAAATGGTGCAATTGCCCT 60.338 47.619 26.94 11.63 41.18 5.19
1196 1207 0.251787 ACCCATTGCTCAAAGTCCCC 60.252 55.000 0.00 0.00 0.00 4.81
1256 1268 1.069823 CTTGGCTAGAGCATCGACCAT 59.930 52.381 3.54 0.00 44.36 3.55
1270 1283 4.019501 AGTTCATTCATCAGAGTCTTGGCT 60.020 41.667 0.00 0.00 0.00 4.75
1389 1404 4.022068 GCTCAATAGCTAGCTCTCTGTCAT 60.022 45.833 23.26 4.03 45.85 3.06
1490 1844 3.260884 CCCAGTGCGATTACCATACCTAT 59.739 47.826 0.00 0.00 0.00 2.57
1620 1975 7.998964 TGGTCATTTCTTCTTCCTCTTTTTACT 59.001 33.333 0.00 0.00 0.00 2.24
1621 1976 8.166422 TGGTCATTTCTTCTTCCTCTTTTTAC 57.834 34.615 0.00 0.00 0.00 2.01
1623 1978 7.124147 TGTTGGTCATTTCTTCTTCCTCTTTTT 59.876 33.333 0.00 0.00 0.00 1.94
1628 1983 6.581171 AATGTTGGTCATTTCTTCTTCCTC 57.419 37.500 0.00 0.00 43.33 3.71
1691 2048 7.380536 AGCTGCATTTCATTGATCAAAGTTTA 58.619 30.769 13.09 0.00 0.00 2.01
1757 2121 1.167851 CTTCGCTCTGAATTTGGCCA 58.832 50.000 0.00 0.00 35.63 5.36
1833 2198 2.957006 GCAAGAGATCTCATTTGCCCAT 59.043 45.455 27.39 4.38 39.88 4.00
2012 2386 6.582677 AATCACGGTGTATCAAAATTGGAA 57.417 33.333 8.17 0.00 0.00 3.53
2021 2395 8.447833 GTCTTTGATTTAAATCACGGTGTATCA 58.552 33.333 26.69 9.37 44.54 2.15
2022 2396 7.908601 GGTCTTTGATTTAAATCACGGTGTATC 59.091 37.037 26.69 13.21 44.54 2.24
2165 2546 2.231215 TTTTGTGCATTTTCCACCCG 57.769 45.000 0.00 0.00 32.30 5.28
2193 2574 0.321564 CTGGGTTTGAGTCGCATCCA 60.322 55.000 0.00 0.00 0.00 3.41
2199 2580 1.374252 CGGTCCTGGGTTTGAGTCG 60.374 63.158 0.00 0.00 0.00 4.18
2223 2605 0.671251 CAGCCCTAAACGCCACAAAA 59.329 50.000 0.00 0.00 0.00 2.44
2297 2679 6.183360 CCAAGTCACGGTCTCACTATGTATAA 60.183 42.308 0.00 0.00 0.00 0.98
2350 2732 2.125685 CACGCATGTGCAAACATTCAA 58.874 42.857 6.08 0.00 39.67 2.69
2365 2747 2.270352 AGGAAAACCAATCTCACGCA 57.730 45.000 0.00 0.00 0.00 5.24
2374 2756 4.453819 CAGTGCAAAACAAAGGAAAACCAA 59.546 37.500 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.