Multiple sequence alignment - TraesCS2D01G493200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G493200 chr2D 100.000 3005 0 0 1 3005 590731137 590728133 0.000000e+00 5550.0
1 TraesCS2D01G493200 chr2D 94.780 364 19 0 2642 3005 81455847 81455484 4.350000e-158 568.0
2 TraesCS2D01G493200 chr2D 88.889 207 15 4 2119 2319 590721868 590721664 6.430000e-62 248.0
3 TraesCS2D01G493200 chr2B 91.365 1656 95 23 684 2312 716125890 716124256 0.000000e+00 2222.0
4 TraesCS2D01G493200 chr2B 90.047 643 21 16 4 626 716126510 716125891 0.000000e+00 793.0
5 TraesCS2D01G493200 chr2B 79.304 575 95 13 1017 1576 716180727 716180162 6.080000e-102 381.0
6 TraesCS2D01G493200 chr2B 86.131 274 20 12 1591 1848 716180108 716179837 2.280000e-71 279.0
7 TraesCS2D01G493200 chr2B 93.023 129 5 2 2447 2575 716124241 716124117 5.120000e-43 185.0
8 TraesCS2D01G493200 chr2B 88.983 118 13 0 2438 2555 716122138 716122021 2.410000e-31 147.0
9 TraesCS2D01G493200 chr2B 86.111 108 15 0 2319 2426 687226432 687226539 1.890000e-22 117.0
10 TraesCS2D01G493200 chr2B 91.379 58 5 0 86 143 716183185 716183128 2.480000e-11 80.5
11 TraesCS2D01G493200 chr2A 91.530 1464 79 22 139 1581 725543493 725542054 0.000000e+00 1975.0
12 TraesCS2D01G493200 chr2A 91.257 1464 83 22 139 1581 725662383 725660944 0.000000e+00 1953.0
13 TraesCS2D01G493200 chr2A 90.915 1464 80 21 139 1581 725597064 725595633 0.000000e+00 1917.0
14 TraesCS2D01G493200 chr2A 84.459 740 62 22 1585 2313 725660908 725660211 0.000000e+00 680.0
15 TraesCS2D01G493200 chr2A 84.324 740 63 23 1585 2313 725542018 725541321 0.000000e+00 675.0
16 TraesCS2D01G493200 chr2A 84.324 740 63 23 1585 2313 725595597 725594900 0.000000e+00 675.0
17 TraesCS2D01G493200 chr2A 82.540 189 14 12 1 187 725545493 725545322 6.710000e-32 148.0
18 TraesCS2D01G493200 chr2A 82.540 189 14 12 1 187 725598493 725598322 6.710000e-32 148.0
19 TraesCS2D01G493200 chr2A 82.011 189 15 12 1 187 725663877 725663706 3.120000e-30 143.0
20 TraesCS2D01G493200 chr1D 94.780 364 19 0 2642 3005 124565299 124564936 4.350000e-158 568.0
21 TraesCS2D01G493200 chr1D 94.972 358 18 0 2642 2999 34586755 34587112 2.020000e-156 562.0
22 TraesCS2D01G493200 chr6D 94.505 364 20 0 2642 3005 168298315 168298678 2.020000e-156 562.0
23 TraesCS2D01G493200 chr6D 93.681 364 23 0 2642 3005 469591830 469591467 2.040000e-151 545.0
24 TraesCS2D01G493200 chr3A 94.460 361 19 1 2645 3005 743351117 743351476 3.380000e-154 555.0
25 TraesCS2D01G493200 chr3A 88.542 96 10 1 2325 2420 644671511 644671605 6.810000e-22 115.0
26 TraesCS2D01G493200 chr6B 93.956 364 22 0 2642 3005 168072241 168071878 4.380000e-153 551.0
27 TraesCS2D01G493200 chr5D 93.973 365 21 1 2642 3005 13737725 13738089 4.380000e-153 551.0
28 TraesCS2D01G493200 chr4D 93.956 364 22 0 2642 3005 8678032 8678395 4.380000e-153 551.0
29 TraesCS2D01G493200 chr7D 85.586 111 16 0 2316 2426 42918328 42918438 1.890000e-22 117.0
30 TraesCS2D01G493200 chr7B 83.740 123 20 0 2317 2439 383736128 383736250 1.890000e-22 117.0
31 TraesCS2D01G493200 chr7B 87.629 97 12 0 2330 2426 415538755 415538851 2.450000e-21 113.0
32 TraesCS2D01G493200 chr7A 85.088 114 17 0 2325 2438 665746111 665745998 1.890000e-22 117.0
33 TraesCS2D01G493200 chr3D 86.408 103 14 0 2324 2426 168289823 168289721 2.450000e-21 113.0
34 TraesCS2D01G493200 chr1A 87.500 96 12 0 2319 2414 522245713 522245808 8.810000e-21 111.0
35 TraesCS2D01G493200 chr6A 82.645 121 21 0 2325 2445 39139728 39139608 1.140000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G493200 chr2D 590728133 590731137 3004 True 5550.000000 5550 100.000000 1 3005 1 chr2D.!!$R3 3004
1 TraesCS2D01G493200 chr2B 716122021 716126510 4489 True 836.750000 2222 90.854500 4 2575 4 chr2B.!!$R1 2571
2 TraesCS2D01G493200 chr2B 716179837 716183185 3348 True 246.833333 381 85.604667 86 1848 3 chr2B.!!$R2 1762
3 TraesCS2D01G493200 chr2A 725541321 725545493 4172 True 932.666667 1975 86.131333 1 2313 3 chr2A.!!$R1 2312
4 TraesCS2D01G493200 chr2A 725660211 725663877 3666 True 925.333333 1953 85.909000 1 2313 3 chr2A.!!$R3 2312
5 TraesCS2D01G493200 chr2A 725594900 725598493 3593 True 913.333333 1917 85.926333 1 2313 3 chr2A.!!$R2 2312


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.031721 AATTAGGACCGTCCGCGATC 59.968 55.0 8.23 0.0 42.75 3.69 F
1723 4359 0.170339 GGTGGCGTTAATTCCTGCAC 59.830 55.0 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 4530 0.396435 CAATGCAGGCGGGGACTATA 59.604 55.0 0.0 0.0 0.0 1.31 R
2808 6483 0.035317 TCTGGCTGCGATGTCTGTTT 59.965 50.0 0.0 0.0 0.0 2.83 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.673484 GACCGTCCGTCCGTCCAA 61.673 66.667 0.00 0.00 35.23 3.53
47 48 3.211564 GACCGTCCGTCCGTCCAAA 62.212 63.158 0.00 0.00 35.23 3.28
48 49 2.029369 CCGTCCGTCCGTCCAAAA 59.971 61.111 0.00 0.00 0.00 2.44
49 50 1.594836 CCGTCCGTCCGTCCAAAAA 60.595 57.895 0.00 0.00 0.00 1.94
50 51 0.952010 CCGTCCGTCCGTCCAAAAAT 60.952 55.000 0.00 0.00 0.00 1.82
54 55 3.125658 CGTCCGTCCGTCCAAAAATAAAT 59.874 43.478 0.00 0.00 0.00 1.40
58 59 7.252708 GTCCGTCCGTCCAAAAATAAATAAAT 58.747 34.615 0.00 0.00 0.00 1.40
79 80 0.031721 AATTAGGACCGTCCGCGATC 59.968 55.000 8.23 0.00 42.75 3.69
80 81 2.126417 ATTAGGACCGTCCGCGATCG 62.126 60.000 11.69 11.69 42.75 3.69
187 2647 1.745232 GACGGGTGGATATGCACAAA 58.255 50.000 26.11 0.00 0.00 2.83
190 2650 1.202132 CGGGTGGATATGCACAAAACG 60.202 52.381 26.11 19.65 0.00 3.60
212 2672 4.314194 CGCGCGTTTTAAATTTTACGTACA 59.686 37.500 24.19 0.00 36.45 2.90
213 2673 5.001451 CGCGCGTTTTAAATTTTACGTACAT 59.999 36.000 24.19 0.00 36.45 2.29
241 2701 1.664151 CACGCGGATAAGAAAACCTCC 59.336 52.381 12.47 0.00 0.00 4.30
273 2752 1.676006 GCAAGCAACCTGTGTAGTGTT 59.324 47.619 0.00 0.00 0.00 3.32
348 2827 0.527565 GTCGCCGGTAGTTTCCTACA 59.472 55.000 1.90 0.00 44.54 2.74
403 2938 1.615919 CGGGAAGGGTGGTAAGCATTT 60.616 52.381 0.00 0.00 0.00 2.32
404 2939 1.824852 GGGAAGGGTGGTAAGCATTTG 59.175 52.381 0.00 0.00 0.00 2.32
405 2940 1.204704 GGAAGGGTGGTAAGCATTTGC 59.795 52.381 0.00 0.00 42.49 3.68
406 2941 1.892474 GAAGGGTGGTAAGCATTTGCA 59.108 47.619 5.20 0.00 45.16 4.08
443 2978 6.128227 GCCAATACCGTGTACATGTTTTTCTA 60.128 38.462 13.91 0.00 0.00 2.10
444 2979 7.238571 CCAATACCGTGTACATGTTTTTCTAC 58.761 38.462 13.91 0.00 0.00 2.59
460 3014 0.899720 CTACGGGGGCAGTTCACTAA 59.100 55.000 0.00 0.00 0.00 2.24
730 3286 4.713553 AGTTGCTCTATCTGATCTCTCGA 58.286 43.478 0.00 0.00 0.00 4.04
731 3287 5.316167 AGTTGCTCTATCTGATCTCTCGAT 58.684 41.667 0.00 0.00 0.00 3.59
732 3288 5.412594 AGTTGCTCTATCTGATCTCTCGATC 59.587 44.000 0.00 0.00 45.09 3.69
801 3358 6.040955 GTCTCACAATGATCTACCTATCACCA 59.959 42.308 0.00 0.00 38.65 4.17
812 3370 6.406370 TCTACCTATCACCACTGATTTTGTG 58.594 40.000 0.00 0.00 38.21 3.33
833 3391 7.994425 TGTGTGGTTGTATCATTTTATGAGT 57.006 32.000 0.00 0.00 43.53 3.41
834 3392 8.402798 TGTGTGGTTGTATCATTTTATGAGTT 57.597 30.769 0.00 0.00 43.53 3.01
835 3393 9.508642 TGTGTGGTTGTATCATTTTATGAGTTA 57.491 29.630 0.00 0.00 43.53 2.24
915 3473 9.481340 TTCCGTATCTATCTTGAATTCTTGATG 57.519 33.333 17.78 11.10 0.00 3.07
960 3530 8.736742 ACGAAACTAATATTTGTGTACGTATCG 58.263 33.333 18.74 14.29 0.00 2.92
964 3534 8.158169 ACTAATATTTGTGTACGTATCGGAGA 57.842 34.615 0.00 0.00 45.75 3.71
965 3535 8.288208 ACTAATATTTGTGTACGTATCGGAGAG 58.712 37.037 0.00 0.00 43.63 3.20
966 3536 4.978083 ATTTGTGTACGTATCGGAGAGT 57.022 40.909 0.00 0.00 43.63 3.24
967 3537 7.734924 ATATTTGTGTACGTATCGGAGAGTA 57.265 36.000 0.00 0.00 43.63 2.59
968 3538 5.475273 TTTGTGTACGTATCGGAGAGTAG 57.525 43.478 0.00 0.00 43.63 2.57
969 3539 4.128925 TGTGTACGTATCGGAGAGTAGT 57.871 45.455 0.00 0.00 43.63 2.73
1003 3576 0.618680 TGACCCACAGATCTCCCAGG 60.619 60.000 0.00 0.00 0.00 4.45
1004 3577 0.325671 GACCCACAGATCTCCCAGGA 60.326 60.000 0.00 0.00 0.00 3.86
1135 3708 1.228154 ACGGGCCAGTTCAAGTTCC 60.228 57.895 4.39 0.00 0.00 3.62
1163 3736 1.153667 GCTGCCTCGAGGAAGTCAG 60.154 63.158 35.26 29.44 43.19 3.51
1190 3769 3.716006 CAGGGACACGTGCAAGCG 61.716 66.667 17.22 0.00 37.94 4.68
1357 3942 0.670546 CACCCACTACCACTGCGAAG 60.671 60.000 0.00 0.00 0.00 3.79
1602 4238 0.242825 CCGACAAGGAGACTGCGTTA 59.757 55.000 0.00 0.00 45.00 3.18
1723 4359 0.170339 GGTGGCGTTAATTCCTGCAC 59.830 55.000 0.00 0.00 0.00 4.57
1773 4415 4.749245 ATCGTTGAAAAACAGGTAGCTG 57.251 40.909 20.16 20.16 0.00 4.24
1774 4416 3.537580 TCGTTGAAAAACAGGTAGCTGT 58.462 40.909 21.62 21.62 39.56 4.40
1783 4441 1.486726 ACAGGTAGCTGTATCCTTGCC 59.513 52.381 25.49 0.00 35.56 4.52
1801 4459 1.942712 CCATCCTACGCACGTACGC 60.943 63.158 16.72 0.00 36.19 4.42
1818 4476 0.449786 CGCACAACTTGTTGGTGACA 59.550 50.000 16.48 0.00 36.72 3.58
1943 4602 7.205992 TCTCATTTCTCTTCCATGTCGAATAG 58.794 38.462 0.00 0.00 0.00 1.73
2075 4734 6.656632 TCCAGCTATTCAGAATTCTATCGT 57.343 37.500 7.86 0.00 0.00 3.73
2076 4735 7.761038 TCCAGCTATTCAGAATTCTATCGTA 57.239 36.000 7.86 0.00 0.00 3.43
2077 4736 8.354711 TCCAGCTATTCAGAATTCTATCGTAT 57.645 34.615 7.86 0.00 0.00 3.06
2078 4737 8.246871 TCCAGCTATTCAGAATTCTATCGTATG 58.753 37.037 7.86 2.61 0.00 2.39
2201 4869 2.066262 AGTGTTTTAGGATCGTGCACG 58.934 47.619 32.76 32.76 41.45 5.34
2206 4874 0.968901 TTAGGATCGTGCACGGACCT 60.969 55.000 37.95 37.95 43.21 3.85
2228 4896 1.375396 CGTCGCCTCCAACATTCCA 60.375 57.895 0.00 0.00 0.00 3.53
2237 4905 4.627741 GCCTCCAACATTCCATAGGTACAA 60.628 45.833 0.00 0.00 0.00 2.41
2238 4906 5.694995 CCTCCAACATTCCATAGGTACAAT 58.305 41.667 0.00 0.00 0.00 2.71
2313 4982 2.949106 CAGGTGCTGCGTTGGAAG 59.051 61.111 0.00 0.00 0.00 3.46
2316 4985 0.674895 AGGTGCTGCGTTGGAAGATC 60.675 55.000 0.00 0.00 0.00 2.75
2319 4988 2.279741 GTGCTGCGTTGGAAGATCATA 58.720 47.619 0.00 0.00 0.00 2.15
2320 4989 2.030946 GTGCTGCGTTGGAAGATCATAC 59.969 50.000 0.00 0.00 0.00 2.39
2322 4991 2.939103 GCTGCGTTGGAAGATCATACTT 59.061 45.455 0.00 0.00 0.00 2.24
2323 4992 3.375299 GCTGCGTTGGAAGATCATACTTT 59.625 43.478 0.00 0.00 0.00 2.66
2324 4993 4.494855 GCTGCGTTGGAAGATCATACTTTC 60.495 45.833 0.00 0.00 0.00 2.62
2325 4994 4.832248 TGCGTTGGAAGATCATACTTTCT 58.168 39.130 0.00 0.00 0.00 2.52
2326 4995 4.870426 TGCGTTGGAAGATCATACTTTCTC 59.130 41.667 0.00 0.00 0.00 2.87
2327 4996 5.112686 GCGTTGGAAGATCATACTTTCTCT 58.887 41.667 0.00 0.00 0.00 3.10
2328 4997 5.006165 GCGTTGGAAGATCATACTTTCTCTG 59.994 44.000 0.00 0.00 0.00 3.35
2329 4998 6.102663 CGTTGGAAGATCATACTTTCTCTGT 58.897 40.000 0.00 0.00 0.00 3.41
2330 4999 6.254589 CGTTGGAAGATCATACTTTCTCTGTC 59.745 42.308 0.00 0.00 0.00 3.51
2331 5000 6.227298 TGGAAGATCATACTTTCTCTGTCC 57.773 41.667 0.00 0.00 0.00 4.02
2332 5001 5.163509 TGGAAGATCATACTTTCTCTGTCCG 60.164 44.000 0.00 0.00 0.00 4.79
2333 5002 5.067936 GGAAGATCATACTTTCTCTGTCCGA 59.932 44.000 0.00 0.00 0.00 4.55
2334 5003 6.405953 GGAAGATCATACTTTCTCTGTCCGAA 60.406 42.308 0.00 0.00 0.00 4.30
2335 5004 6.531503 AGATCATACTTTCTCTGTCCGAAA 57.468 37.500 0.00 0.00 0.00 3.46
2336 5005 6.936279 AGATCATACTTTCTCTGTCCGAAAA 58.064 36.000 0.00 0.00 30.73 2.29
2337 5006 7.386851 AGATCATACTTTCTCTGTCCGAAAAA 58.613 34.615 0.00 0.00 30.73 1.94
2356 5025 4.465632 AAAACTTGTCCCAAACTTGTCC 57.534 40.909 0.00 0.00 0.00 4.02
2357 5026 3.382083 AACTTGTCCCAAACTTGTCCT 57.618 42.857 0.00 0.00 0.00 3.85
2358 5027 3.382083 ACTTGTCCCAAACTTGTCCTT 57.618 42.857 0.00 0.00 0.00 3.36
2359 5028 3.708451 ACTTGTCCCAAACTTGTCCTTT 58.292 40.909 0.00 0.00 0.00 3.11
2360 5029 4.862371 ACTTGTCCCAAACTTGTCCTTTA 58.138 39.130 0.00 0.00 0.00 1.85
2361 5030 5.265989 ACTTGTCCCAAACTTGTCCTTTAA 58.734 37.500 0.00 0.00 0.00 1.52
2362 5031 5.717654 ACTTGTCCCAAACTTGTCCTTTAAA 59.282 36.000 0.00 0.00 0.00 1.52
2363 5032 6.382859 ACTTGTCCCAAACTTGTCCTTTAAAT 59.617 34.615 0.00 0.00 0.00 1.40
2364 5033 6.155475 TGTCCCAAACTTGTCCTTTAAATG 57.845 37.500 0.00 0.00 0.00 2.32
2365 5034 5.894393 TGTCCCAAACTTGTCCTTTAAATGA 59.106 36.000 0.00 0.00 0.00 2.57
2366 5035 6.381420 TGTCCCAAACTTGTCCTTTAAATGAA 59.619 34.615 0.00 0.00 0.00 2.57
2367 5036 7.070571 TGTCCCAAACTTGTCCTTTAAATGAAT 59.929 33.333 0.00 0.00 0.00 2.57
2368 5037 7.384932 GTCCCAAACTTGTCCTTTAAATGAATG 59.615 37.037 0.00 0.00 0.00 2.67
2369 5038 7.070571 TCCCAAACTTGTCCTTTAAATGAATGT 59.929 33.333 0.00 0.00 0.00 2.71
2370 5039 8.364142 CCCAAACTTGTCCTTTAAATGAATGTA 58.636 33.333 0.00 0.00 0.00 2.29
2371 5040 9.927668 CCAAACTTGTCCTTTAAATGAATGTAT 57.072 29.630 0.00 0.00 0.00 2.29
2379 5048 9.221775 GTCCTTTAAATGAATGTATTTAGCACG 57.778 33.333 0.00 0.00 34.87 5.34
2380 5049 9.168451 TCCTTTAAATGAATGTATTTAGCACGA 57.832 29.630 0.00 0.00 34.87 4.35
2381 5050 9.781834 CCTTTAAATGAATGTATTTAGCACGAA 57.218 29.630 0.00 0.00 34.87 3.85
2386 5055 9.988350 AAATGAATGTATTTAGCACGAAGTTAG 57.012 29.630 0.00 0.00 41.61 2.34
2387 5056 8.718102 ATGAATGTATTTAGCACGAAGTTAGT 57.282 30.769 0.00 0.00 41.61 2.24
2388 5057 7.959733 TGAATGTATTTAGCACGAAGTTAGTG 58.040 34.615 11.38 11.38 41.61 2.74
2400 5069 7.757097 CACGAAGTTAGTGCTAAATACATCT 57.243 36.000 3.04 0.00 41.61 2.90
2401 5070 8.851960 CACGAAGTTAGTGCTAAATACATCTA 57.148 34.615 3.04 0.00 41.61 1.98
2402 5071 9.464714 CACGAAGTTAGTGCTAAATACATCTAT 57.535 33.333 3.04 0.00 41.61 1.98
2411 5080 9.780186 AGTGCTAAATACATCTATTTAAGGGAC 57.220 33.333 0.00 0.00 35.36 4.46
2412 5081 9.555727 GTGCTAAATACATCTATTTAAGGGACA 57.444 33.333 0.00 0.00 35.36 4.02
2421 5090 8.803235 ACATCTATTTAAGGGACAAACTTTTCC 58.197 33.333 0.00 0.00 0.00 3.13
2422 5091 7.443259 TCTATTTAAGGGACAAACTTTTCCG 57.557 36.000 0.00 0.00 32.00 4.30
2423 5092 4.922471 TTTAAGGGACAAACTTTTCCGG 57.078 40.909 0.00 0.00 32.00 5.14
2424 5093 2.740506 AAGGGACAAACTTTTCCGGA 57.259 45.000 0.00 0.00 32.00 5.14
2425 5094 1.977056 AGGGACAAACTTTTCCGGAC 58.023 50.000 1.83 0.00 32.00 4.79
2426 5095 1.213430 AGGGACAAACTTTTCCGGACA 59.787 47.619 1.83 0.00 32.00 4.02
2427 5096 2.025898 GGGACAAACTTTTCCGGACAA 58.974 47.619 1.83 2.22 32.00 3.18
2428 5097 2.427812 GGGACAAACTTTTCCGGACAAA 59.572 45.455 1.83 7.63 32.00 2.83
2429 5098 3.490249 GGGACAAACTTTTCCGGACAAAG 60.490 47.826 25.01 25.01 37.29 2.77
2430 5099 3.490249 GGACAAACTTTTCCGGACAAAGG 60.490 47.826 27.69 16.32 35.82 3.11
2431 5100 3.358118 ACAAACTTTTCCGGACAAAGGA 58.642 40.909 27.69 5.77 35.82 3.36
2432 5101 3.764972 ACAAACTTTTCCGGACAAAGGAA 59.235 39.130 27.69 10.81 45.19 3.36
2443 5112 8.441312 TTCCGGACAAAGGAAATACATTATAC 57.559 34.615 1.83 0.00 44.04 1.47
2444 5113 7.566569 TCCGGACAAAGGAAATACATTATACA 58.433 34.615 0.00 0.00 34.33 2.29
2445 5114 8.215050 TCCGGACAAAGGAAATACATTATACAT 58.785 33.333 0.00 0.00 34.33 2.29
2464 5133 3.933332 ACATAAAAGCTTAGTCGTGGCTC 59.067 43.478 0.00 0.00 35.06 4.70
2480 5149 1.065551 GGCTCACTTGCACGTCTTTTT 59.934 47.619 0.00 0.00 34.04 1.94
2523 5192 4.225267 GGGAAGATTAGTCACAGGAGGAAA 59.775 45.833 0.00 0.00 0.00 3.13
2524 5193 5.179533 GGAAGATTAGTCACAGGAGGAAAC 58.820 45.833 0.00 0.00 0.00 2.78
2546 5215 6.458232 ACTACTACTCATGAAAGCTACTGG 57.542 41.667 0.00 0.00 0.00 4.00
2566 5235 0.822811 TAGCATAACGTAACCGGCCA 59.177 50.000 0.00 0.00 38.78 5.36
2567 5236 0.179468 AGCATAACGTAACCGGCCAT 59.821 50.000 0.00 0.00 38.78 4.40
2604 5350 2.317609 CCGTCAGGCAACAAGACCG 61.318 63.158 0.00 0.00 39.78 4.79
2611 5357 3.342627 CAACAAGACCGCGGCGAA 61.343 61.111 28.58 0.00 0.00 4.70
2632 5378 8.879342 GCGAAGGCTATCATATGATACTAAAT 57.121 34.615 19.44 7.04 36.05 1.40
2633 5379 9.319143 GCGAAGGCTATCATATGATACTAAATT 57.681 33.333 19.44 10.94 36.05 1.82
2637 5383 9.809096 AGGCTATCATATGATACTAAATTCGTG 57.191 33.333 19.44 8.59 36.05 4.35
2639 5385 9.087424 GCTATCATATGATACTAAATTCGTGCA 57.913 33.333 19.44 0.00 36.05 4.57
2661 6336 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
2662 6337 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
2663 6338 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
2674 6349 2.976350 ATCTGGGCGATGCATGCG 60.976 61.111 14.09 9.10 0.00 4.73
2680 6355 2.717485 GCGATGCATGCGGTCATT 59.283 55.556 14.09 0.00 0.00 2.57
2685 6360 3.631144 CGATGCATGCGGTCATTTTATT 58.369 40.909 14.09 0.00 0.00 1.40
2686 6361 4.782156 CGATGCATGCGGTCATTTTATTA 58.218 39.130 14.09 0.00 0.00 0.98
2690 6365 7.536964 CGATGCATGCGGTCATTTTATTAATTA 59.463 33.333 14.09 0.00 0.00 1.40
2691 6366 9.357652 GATGCATGCGGTCATTTTATTAATTAT 57.642 29.630 14.09 0.00 0.00 1.28
2692 6367 9.709495 ATGCATGCGGTCATTTTATTAATTATT 57.291 25.926 14.09 0.00 0.00 1.40
2693 6368 9.190858 TGCATGCGGTCATTTTATTAATTATTC 57.809 29.630 14.09 0.00 0.00 1.75
2694 6369 9.410556 GCATGCGGTCATTTTATTAATTATTCT 57.589 29.630 0.00 0.00 0.00 2.40
2722 6397 9.436957 ACAAGACCTTATAAAGTCATACAACAG 57.563 33.333 15.04 0.00 0.00 3.16
2734 6409 8.535690 AAGTCATACAACAGTAAGACTAAAGC 57.464 34.615 12.21 0.00 42.62 3.51
2735 6410 7.097834 AGTCATACAACAGTAAGACTAAAGCC 58.902 38.462 10.67 0.00 42.02 4.35
2737 6412 7.549488 GTCATACAACAGTAAGACTAAAGCCAT 59.451 37.037 4.35 0.00 34.99 4.40
2738 6413 7.764443 TCATACAACAGTAAGACTAAAGCCATC 59.236 37.037 0.00 0.00 0.00 3.51
2739 6414 4.929808 ACAACAGTAAGACTAAAGCCATCG 59.070 41.667 0.00 0.00 0.00 3.84
2740 6415 4.803098 ACAGTAAGACTAAAGCCATCGT 57.197 40.909 0.00 0.00 0.00 3.73
2741 6416 4.745649 ACAGTAAGACTAAAGCCATCGTC 58.254 43.478 0.00 0.00 0.00 4.20
2743 6418 5.651139 ACAGTAAGACTAAAGCCATCGTCTA 59.349 40.000 0.00 0.00 35.82 2.59
2744 6419 6.152323 ACAGTAAGACTAAAGCCATCGTCTAA 59.848 38.462 0.00 0.00 35.82 2.10
2745 6420 6.693545 CAGTAAGACTAAAGCCATCGTCTAAG 59.306 42.308 0.00 0.00 35.82 2.18
2746 6421 4.048241 AGACTAAAGCCATCGTCTAAGC 57.952 45.455 0.00 0.00 35.15 3.09
2747 6422 3.447586 AGACTAAAGCCATCGTCTAAGCA 59.552 43.478 0.00 0.00 35.15 3.91
2748 6423 4.081642 AGACTAAAGCCATCGTCTAAGCAA 60.082 41.667 0.00 0.00 35.15 3.91
2749 6424 3.933332 ACTAAAGCCATCGTCTAAGCAAC 59.067 43.478 0.00 0.00 0.00 4.17
2751 6426 2.472695 AGCCATCGTCTAAGCAACAA 57.527 45.000 0.00 0.00 0.00 2.83
2752 6427 2.076863 AGCCATCGTCTAAGCAACAAC 58.923 47.619 0.00 0.00 0.00 3.32
2753 6428 2.076863 GCCATCGTCTAAGCAACAACT 58.923 47.619 0.00 0.00 0.00 3.16
2754 6429 2.159653 GCCATCGTCTAAGCAACAACTG 60.160 50.000 0.00 0.00 0.00 3.16
2755 6430 3.067106 CCATCGTCTAAGCAACAACTGT 58.933 45.455 0.00 0.00 0.00 3.55
2757 6432 2.390938 TCGTCTAAGCAACAACTGTCG 58.609 47.619 0.00 0.00 0.00 4.35
2759 6434 2.135933 GTCTAAGCAACAACTGTCGCT 58.864 47.619 0.00 0.00 35.90 4.93
2760 6435 3.314553 GTCTAAGCAACAACTGTCGCTA 58.685 45.455 0.00 0.00 33.45 4.26
2761 6436 3.121445 GTCTAAGCAACAACTGTCGCTAC 59.879 47.826 0.00 0.00 33.45 3.58
2762 6437 1.948104 AAGCAACAACTGTCGCTACA 58.052 45.000 0.00 0.00 33.45 2.74
2763 6438 1.217882 AGCAACAACTGTCGCTACAC 58.782 50.000 0.00 0.00 31.60 2.90
2765 6440 1.865865 CAACAACTGTCGCTACACCT 58.134 50.000 0.00 0.00 0.00 4.00
2766 6441 2.864882 GCAACAACTGTCGCTACACCTA 60.865 50.000 0.00 0.00 0.00 3.08
2767 6442 2.719426 ACAACTGTCGCTACACCTAC 57.281 50.000 0.00 0.00 0.00 3.18
2768 6443 1.271656 ACAACTGTCGCTACACCTACC 59.728 52.381 0.00 0.00 0.00 3.18
2769 6444 0.893447 AACTGTCGCTACACCTACCC 59.107 55.000 0.00 0.00 0.00 3.69
2770 6445 0.251474 ACTGTCGCTACACCTACCCA 60.251 55.000 0.00 0.00 0.00 4.51
2773 6448 1.903860 TGTCGCTACACCTACCCAATT 59.096 47.619 0.00 0.00 0.00 2.32
2774 6449 2.277084 GTCGCTACACCTACCCAATTG 58.723 52.381 0.00 0.00 0.00 2.32
2775 6450 2.093869 GTCGCTACACCTACCCAATTGA 60.094 50.000 7.12 0.00 0.00 2.57
2777 6452 3.199071 TCGCTACACCTACCCAATTGATT 59.801 43.478 7.12 0.00 0.00 2.57
2778 6453 4.406326 TCGCTACACCTACCCAATTGATTA 59.594 41.667 7.12 0.00 0.00 1.75
2779 6454 5.104859 TCGCTACACCTACCCAATTGATTAA 60.105 40.000 7.12 0.00 0.00 1.40
2780 6455 5.236478 CGCTACACCTACCCAATTGATTAAG 59.764 44.000 7.12 0.00 0.00 1.85
2781 6456 5.531287 GCTACACCTACCCAATTGATTAAGG 59.469 44.000 7.12 10.29 0.00 2.69
2782 6457 4.867086 ACACCTACCCAATTGATTAAGGG 58.133 43.478 7.12 0.22 46.96 3.95
2783 6458 4.215109 CACCTACCCAATTGATTAAGGGG 58.785 47.826 7.12 5.55 45.83 4.79
2785 6460 1.775385 ACCCAATTGATTAAGGGGCG 58.225 50.000 7.12 0.00 45.83 6.13
2786 6461 0.389025 CCCAATTGATTAAGGGGCGC 59.611 55.000 7.12 0.00 37.66 6.53
2787 6462 1.402787 CCAATTGATTAAGGGGCGCT 58.597 50.000 7.64 0.00 0.00 5.92
2789 6464 2.955660 CCAATTGATTAAGGGGCGCTAA 59.044 45.455 7.64 0.00 0.00 3.09
2791 6466 4.764823 CCAATTGATTAAGGGGCGCTAATA 59.235 41.667 7.64 0.00 0.00 0.98
2792 6467 5.106157 CCAATTGATTAAGGGGCGCTAATAG 60.106 44.000 7.64 0.00 0.00 1.73
2793 6468 3.053831 TGATTAAGGGGCGCTAATAGC 57.946 47.619 7.64 1.41 38.02 2.97
2800 6475 2.669910 GCGCTAATAGCCTGGGCC 60.670 66.667 6.69 0.00 43.17 5.80
2801 6476 3.151906 CGCTAATAGCCTGGGCCT 58.848 61.111 4.53 0.00 43.17 5.19
2802 6477 1.827399 GCGCTAATAGCCTGGGCCTA 61.827 60.000 4.53 0.00 43.17 3.93
2803 6478 0.685097 CGCTAATAGCCTGGGCCTAA 59.315 55.000 4.53 0.00 43.17 2.69
2804 6479 1.279271 CGCTAATAGCCTGGGCCTAAT 59.721 52.381 4.53 0.00 43.17 1.73
2805 6480 2.500098 CGCTAATAGCCTGGGCCTAATA 59.500 50.000 4.53 0.00 43.17 0.98
2806 6481 3.679083 CGCTAATAGCCTGGGCCTAATAC 60.679 52.174 4.53 0.00 43.17 1.89
2808 6483 2.433444 ATAGCCTGGGCCTAATACCA 57.567 50.000 4.53 0.00 43.17 3.25
2809 6484 2.199927 TAGCCTGGGCCTAATACCAA 57.800 50.000 4.53 0.00 43.17 3.67
2810 6485 1.304891 AGCCTGGGCCTAATACCAAA 58.695 50.000 4.53 0.00 43.17 3.28
2811 6486 1.063942 AGCCTGGGCCTAATACCAAAC 60.064 52.381 4.53 0.00 43.17 2.93
2812 6487 1.341581 GCCTGGGCCTAATACCAAACA 60.342 52.381 4.53 0.00 36.09 2.83
2813 6488 2.654863 CCTGGGCCTAATACCAAACAG 58.345 52.381 4.53 0.00 36.09 3.16
2814 6489 2.241176 CCTGGGCCTAATACCAAACAGA 59.759 50.000 4.53 0.00 36.09 3.41
2815 6490 3.279434 CTGGGCCTAATACCAAACAGAC 58.721 50.000 4.53 0.00 36.09 3.51
2816 6491 2.645297 TGGGCCTAATACCAAACAGACA 59.355 45.455 4.53 0.00 32.89 3.41
2818 6493 3.883489 GGGCCTAATACCAAACAGACATC 59.117 47.826 0.84 0.00 0.00 3.06
2819 6494 3.560068 GGCCTAATACCAAACAGACATCG 59.440 47.826 0.00 0.00 0.00 3.84
2821 6496 4.188462 CCTAATACCAAACAGACATCGCA 58.812 43.478 0.00 0.00 0.00 5.10
2822 6497 4.271049 CCTAATACCAAACAGACATCGCAG 59.729 45.833 0.00 0.00 0.00 5.18
2823 6498 1.438651 TACCAAACAGACATCGCAGC 58.561 50.000 0.00 0.00 0.00 5.25
2824 6499 1.237285 ACCAAACAGACATCGCAGCC 61.237 55.000 0.00 0.00 0.00 4.85
2825 6500 1.236616 CCAAACAGACATCGCAGCCA 61.237 55.000 0.00 0.00 0.00 4.75
2826 6501 0.167470 CAAACAGACATCGCAGCCAG 59.833 55.000 0.00 0.00 0.00 4.85
2827 6502 0.035317 AAACAGACATCGCAGCCAGA 59.965 50.000 0.00 0.00 0.00 3.86
2828 6503 0.671781 AACAGACATCGCAGCCAGAC 60.672 55.000 0.00 0.00 0.00 3.51
2829 6504 1.812922 CAGACATCGCAGCCAGACC 60.813 63.158 0.00 0.00 0.00 3.85
2832 6507 0.175760 GACATCGCAGCCAGACCTAA 59.824 55.000 0.00 0.00 0.00 2.69
2833 6508 0.108138 ACATCGCAGCCAGACCTAAC 60.108 55.000 0.00 0.00 0.00 2.34
2834 6509 0.108186 CATCGCAGCCAGACCTAACA 60.108 55.000 0.00 0.00 0.00 2.41
2836 6511 0.175760 TCGCAGCCAGACCTAACATC 59.824 55.000 0.00 0.00 0.00 3.06
2837 6512 0.176680 CGCAGCCAGACCTAACATCT 59.823 55.000 0.00 0.00 0.00 2.90
2839 6514 2.159099 CGCAGCCAGACCTAACATCTAA 60.159 50.000 0.00 0.00 0.00 2.10
2840 6515 3.462021 GCAGCCAGACCTAACATCTAAG 58.538 50.000 0.00 0.00 0.00 2.18
2841 6516 3.133003 GCAGCCAGACCTAACATCTAAGA 59.867 47.826 0.00 0.00 0.00 2.10
2842 6517 4.688021 CAGCCAGACCTAACATCTAAGAC 58.312 47.826 0.00 0.00 0.00 3.01
2843 6518 4.404073 CAGCCAGACCTAACATCTAAGACT 59.596 45.833 0.00 0.00 0.00 3.24
2844 6519 5.026790 AGCCAGACCTAACATCTAAGACTT 58.973 41.667 0.00 0.00 0.00 3.01
2845 6520 5.105146 AGCCAGACCTAACATCTAAGACTTG 60.105 44.000 0.00 0.00 0.00 3.16
2846 6521 5.105310 GCCAGACCTAACATCTAAGACTTGA 60.105 44.000 0.00 0.00 0.00 3.02
2847 6522 6.568869 CCAGACCTAACATCTAAGACTTGAG 58.431 44.000 0.00 0.00 0.00 3.02
2848 6523 6.406400 CCAGACCTAACATCTAAGACTTGAGG 60.406 46.154 0.00 0.00 0.00 3.86
2849 6524 6.153680 CAGACCTAACATCTAAGACTTGAGGT 59.846 42.308 0.00 0.00 37.49 3.85
2851 6526 5.422650 ACCTAACATCTAAGACTTGAGGTCC 59.577 44.000 0.00 0.00 45.54 4.46
2852 6527 4.828072 AACATCTAAGACTTGAGGTCCC 57.172 45.455 0.00 0.00 45.54 4.46
2853 6528 3.791320 ACATCTAAGACTTGAGGTCCCA 58.209 45.455 0.00 0.00 45.54 4.37
2854 6529 4.168101 ACATCTAAGACTTGAGGTCCCAA 58.832 43.478 0.00 0.00 45.54 4.12
2855 6530 4.020128 ACATCTAAGACTTGAGGTCCCAAC 60.020 45.833 0.00 0.00 45.54 3.77
2856 6531 2.904434 TCTAAGACTTGAGGTCCCAACC 59.096 50.000 0.00 0.00 45.54 3.77
2865 6540 3.637273 GTCCCAACCAGGACGCCT 61.637 66.667 0.00 0.00 46.57 5.52
2905 6580 4.373116 TCCGGCGTGCTCCTCAAC 62.373 66.667 6.01 0.00 0.00 3.18
2908 6583 2.743928 GGCGTGCTCCTCAACCAG 60.744 66.667 0.00 0.00 0.00 4.00
2909 6584 2.743928 GCGTGCTCCTCAACCAGG 60.744 66.667 0.00 0.00 45.15 4.45
2923 6598 3.449227 CAGGACGCCTGCCGAGTA 61.449 66.667 12.01 0.00 45.13 2.59
2924 6599 2.442272 AGGACGCCTGCCGAGTAT 60.442 61.111 0.00 0.00 41.02 2.12
2925 6600 2.279517 GGACGCCTGCCGAGTATG 60.280 66.667 0.00 0.00 41.02 2.39
2927 6602 1.299468 GACGCCTGCCGAGTATGAG 60.299 63.158 0.00 0.00 41.02 2.90
2928 6603 2.028190 CGCCTGCCGAGTATGAGG 59.972 66.667 0.00 0.00 40.02 3.86
2934 6609 4.647615 CCGAGTATGAGGCCGCCG 62.648 72.222 3.22 0.00 0.00 6.46
2936 6611 4.221422 GAGTATGAGGCCGCCGCA 62.221 66.667 18.82 18.82 37.78 5.69
2937 6612 4.227134 AGTATGAGGCCGCCGCAG 62.227 66.667 21.00 0.00 36.65 5.18
2957 6632 0.819582 CCACTTGGCACCAATCCATC 59.180 55.000 1.86 0.00 35.20 3.51
2958 6633 1.617804 CCACTTGGCACCAATCCATCT 60.618 52.381 1.86 0.00 35.20 2.90
2959 6634 2.173519 CACTTGGCACCAATCCATCTT 58.826 47.619 1.86 0.00 35.20 2.40
2960 6635 2.165030 CACTTGGCACCAATCCATCTTC 59.835 50.000 1.86 0.00 35.20 2.87
2961 6636 2.225091 ACTTGGCACCAATCCATCTTCA 60.225 45.455 1.86 0.00 35.20 3.02
2962 6637 2.133281 TGGCACCAATCCATCTTCAG 57.867 50.000 0.00 0.00 0.00 3.02
2964 6639 2.295885 GGCACCAATCCATCTTCAGAG 58.704 52.381 0.00 0.00 0.00 3.35
2965 6640 1.674962 GCACCAATCCATCTTCAGAGC 59.325 52.381 0.00 0.00 0.00 4.09
2966 6641 2.683152 GCACCAATCCATCTTCAGAGCT 60.683 50.000 0.00 0.00 0.00 4.09
2967 6642 2.943690 CACCAATCCATCTTCAGAGCTG 59.056 50.000 0.00 0.00 0.00 4.24
2969 6644 3.776969 ACCAATCCATCTTCAGAGCTGTA 59.223 43.478 0.00 0.00 0.00 2.74
2970 6645 4.125703 CCAATCCATCTTCAGAGCTGTAC 58.874 47.826 0.00 0.00 0.00 2.90
2971 6646 4.141756 CCAATCCATCTTCAGAGCTGTACT 60.142 45.833 0.00 0.00 0.00 2.73
2972 6647 4.669206 ATCCATCTTCAGAGCTGTACTG 57.331 45.455 0.00 0.00 36.80 2.74
2976 6651 3.032017 TCTTCAGAGCTGTACTGTTGC 57.968 47.619 0.00 0.00 36.81 4.17
2979 6654 2.964740 TCAGAGCTGTACTGTTGCATC 58.035 47.619 0.00 0.00 36.81 3.91
2982 6657 1.656095 GAGCTGTACTGTTGCATCGAC 59.344 52.381 0.00 0.00 0.00 4.20
2983 6658 0.721718 GCTGTACTGTTGCATCGACC 59.278 55.000 1.46 0.00 0.00 4.79
2986 6661 2.412870 TGTACTGTTGCATCGACCTTG 58.587 47.619 0.00 0.00 0.00 3.61
2987 6662 1.128692 GTACTGTTGCATCGACCTTGC 59.871 52.381 2.50 2.50 40.55 4.01
2988 6663 1.237285 ACTGTTGCATCGACCTTGCC 61.237 55.000 7.01 0.00 39.39 4.52
2989 6664 1.926511 CTGTTGCATCGACCTTGCCC 61.927 60.000 7.01 0.00 39.39 5.36
2990 6665 2.745884 TTGCATCGACCTTGCCCG 60.746 61.111 7.01 0.00 39.39 6.13
2991 6666 4.776322 TGCATCGACCTTGCCCGG 62.776 66.667 7.01 0.00 39.39 5.73
2999 6674 2.187946 CCTTGCCCGGTCTAGCTG 59.812 66.667 0.00 0.00 0.00 4.24
3000 6675 2.512515 CTTGCCCGGTCTAGCTGC 60.513 66.667 0.00 0.00 0.00 5.25
3001 6676 3.003173 TTGCCCGGTCTAGCTGCT 61.003 61.111 7.57 7.57 0.00 4.24
3002 6677 3.315142 TTGCCCGGTCTAGCTGCTG 62.315 63.158 13.43 2.51 0.00 4.41
3004 6679 4.537433 CCCGGTCTAGCTGCTGCC 62.537 72.222 13.43 10.67 40.80 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 8.724229 GCGGACGGTCCTAATTTATTTATTTAT 58.276 33.333 23.86 0.00 33.30 1.40
50 51 7.095691 CGCGGACGGTCCTAATTTATTTATTTA 60.096 37.037 23.86 0.00 33.30 1.40
54 55 4.050553 CGCGGACGGTCCTAATTTATTTA 58.949 43.478 23.86 0.00 33.30 1.40
58 59 1.102154 TCGCGGACGGTCCTAATTTA 58.898 50.000 23.86 2.02 40.63 1.40
79 80 0.318614 AAACTTGGCCAAACATCGCG 60.319 50.000 20.91 8.40 0.00 5.87
80 81 1.526464 CAAAACTTGGCCAAACATCGC 59.474 47.619 20.91 0.00 0.00 4.58
81 82 2.134346 CCAAAACTTGGCCAAACATCG 58.866 47.619 20.91 9.97 45.17 3.84
187 2647 3.723272 ACGTAAAATTTAAAACGCGCGTT 59.277 34.783 39.88 39.88 38.87 4.84
190 2650 5.706008 TGTACGTAAAATTTAAAACGCGC 57.294 34.783 5.73 0.00 38.87 6.86
212 2672 7.330208 GGTTTTCTTATCCGCGTGTACATATAT 59.670 37.037 4.92 0.00 0.00 0.86
213 2673 6.642131 GGTTTTCTTATCCGCGTGTACATATA 59.358 38.462 4.92 0.00 0.00 0.86
241 2701 0.532573 TTGCTTGCTAGGTCCTCTCG 59.467 55.000 0.00 0.00 0.00 4.04
273 2752 3.438216 TTTGAGATTGATCCAGGCACA 57.562 42.857 0.00 0.00 0.00 4.57
315 2794 0.110464 GGCGACCGTATAGTCTACGC 60.110 60.000 0.00 0.00 43.00 4.42
348 2827 0.321919 TGCACCTACCGTAGACGACT 60.322 55.000 7.16 0.00 43.02 4.18
443 2978 1.125711 AGTTAGTGAACTGCCCCCGT 61.126 55.000 0.00 0.00 44.50 5.28
444 2979 0.899720 TAGTTAGTGAACTGCCCCCG 59.100 55.000 0.59 0.00 45.74 5.73
460 3014 1.101331 CTAGTCTTTCCGCGGGTAGT 58.899 55.000 27.83 13.30 0.00 2.73
623 3179 1.726533 GAACCGCTAGAGAGGACCCG 61.727 65.000 6.29 0.00 38.45 5.28
630 3186 7.002879 AGGTGTTTATATAGAACCGCTAGAGA 58.997 38.462 0.00 0.00 35.99 3.10
730 3286 8.701908 TGATAGTTAGTTTACCTGATACCGAT 57.298 34.615 0.00 0.00 0.00 4.18
731 3287 8.523915 TTGATAGTTAGTTTACCTGATACCGA 57.476 34.615 0.00 0.00 0.00 4.69
732 3288 9.028185 GTTTGATAGTTAGTTTACCTGATACCG 57.972 37.037 0.00 0.00 0.00 4.02
792 3349 4.156556 CCACACAAAATCAGTGGTGATAGG 59.843 45.833 0.00 0.28 43.04 2.57
801 3358 6.899393 ATGATACAACCACACAAAATCAGT 57.101 33.333 0.00 0.00 0.00 3.41
915 3473 3.066342 TCGTCTACGAGATTCCACCAATC 59.934 47.826 0.14 0.00 44.22 2.67
945 3515 4.978083 ACTCTCCGATACGTACACAAAT 57.022 40.909 0.00 0.00 0.00 2.32
951 3521 5.524284 TCAGTACTACTCTCCGATACGTAC 58.476 45.833 0.00 0.00 0.00 3.67
960 3530 4.153475 GCTCGATGATCAGTACTACTCTCC 59.847 50.000 0.09 0.00 0.00 3.71
964 3534 4.513692 GTCAGCTCGATGATCAGTACTACT 59.486 45.833 0.09 0.00 0.00 2.57
965 3535 4.319911 GGTCAGCTCGATGATCAGTACTAC 60.320 50.000 0.09 0.00 30.27 2.73
966 3536 3.815962 GGTCAGCTCGATGATCAGTACTA 59.184 47.826 0.09 0.00 30.27 1.82
967 3537 2.621055 GGTCAGCTCGATGATCAGTACT 59.379 50.000 0.09 0.00 30.27 2.73
968 3538 2.287909 GGGTCAGCTCGATGATCAGTAC 60.288 54.545 0.09 0.00 31.55 2.73
969 3539 1.957177 GGGTCAGCTCGATGATCAGTA 59.043 52.381 0.09 0.00 31.55 2.74
1003 3576 0.807496 GTCATGGCTCTGCACCTTTC 59.193 55.000 0.00 0.00 0.00 2.62
1004 3577 0.403271 AGTCATGGCTCTGCACCTTT 59.597 50.000 0.00 0.00 0.00 3.11
1126 3699 1.021202 CCGTTGCACTGGAACTTGAA 58.979 50.000 11.20 0.00 0.00 2.69
1127 3700 1.444119 GCCGTTGCACTGGAACTTGA 61.444 55.000 11.20 0.00 37.47 3.02
1190 3769 2.507324 GGAGGTCGAAGTCGCAGC 60.507 66.667 0.00 0.00 39.60 5.25
1357 3942 2.509422 GAGGTAATGGCCCGTCCC 59.491 66.667 0.00 0.00 0.00 4.46
1472 4057 3.302347 CTGACGCCGCCTCCTTTCT 62.302 63.158 0.00 0.00 0.00 2.52
1686 4322 1.203994 ACCGGATTTCCAGTGAGTACG 59.796 52.381 9.46 0.00 35.14 3.67
1723 4359 0.755079 TTGGAGCCCAGATCGATCAG 59.245 55.000 26.47 18.71 33.81 2.90
1773 4415 1.608283 GCGTAGGATGGGCAAGGATAC 60.608 57.143 0.00 0.00 0.00 2.24
1774 4416 0.685097 GCGTAGGATGGGCAAGGATA 59.315 55.000 0.00 0.00 0.00 2.59
1783 4441 1.942712 GCGTACGTGCGTAGGATGG 60.943 63.158 26.31 0.00 39.95 3.51
1801 4459 1.202290 GCCTGTCACCAACAAGTTGTG 60.202 52.381 9.79 0.07 37.45 3.33
1818 4476 4.621510 CGTACATATATCACCATGCAGCCT 60.622 45.833 0.00 0.00 0.00 4.58
1872 4530 0.396435 CAATGCAGGCGGGGACTATA 59.604 55.000 0.00 0.00 0.00 1.31
1873 4531 1.149174 CAATGCAGGCGGGGACTAT 59.851 57.895 0.00 0.00 0.00 2.12
1874 4532 2.297895 ACAATGCAGGCGGGGACTA 61.298 57.895 0.00 0.00 0.00 2.59
1875 4533 3.650950 ACAATGCAGGCGGGGACT 61.651 61.111 0.00 0.00 0.00 3.85
1943 4602 9.895894 CACTTACATATAATAACGTGTTGACAC 57.104 33.333 4.20 4.20 43.15 3.67
2053 4712 8.031864 ACATACGATAGAATTCTGAATAGCTGG 58.968 37.037 18.47 3.04 41.38 4.85
2112 4777 9.822185 GCCCATCAATTATTAGTTTTTCTTGAT 57.178 29.630 0.00 0.00 33.42 2.57
2113 4778 8.257306 GGCCCATCAATTATTAGTTTTTCTTGA 58.743 33.333 0.00 0.00 0.00 3.02
2123 4788 5.645497 GTCTAGCTGGCCCATCAATTATTAG 59.355 44.000 0.00 0.00 0.00 1.73
2159 4824 2.749621 GTTGCCCAAGACCTGAATACTG 59.250 50.000 0.00 0.00 0.00 2.74
2201 4869 4.176851 GAGGCGACGACGAGGTCC 62.177 72.222 12.29 2.32 42.66 4.46
2206 4874 2.149803 AATGTTGGAGGCGACGACGA 62.150 55.000 12.29 0.00 42.66 4.20
2220 4888 9.920946 AACTAATGATTGTACCTATGGAATGTT 57.079 29.630 0.00 0.00 0.00 2.71
2237 4905 8.150945 ACACGCTATTCCTGATTAACTAATGAT 58.849 33.333 0.00 0.00 0.00 2.45
2238 4906 7.497595 ACACGCTATTCCTGATTAACTAATGA 58.502 34.615 0.00 0.00 0.00 2.57
2313 4982 7.596749 TTTTTCGGACAGAGAAAGTATGATC 57.403 36.000 0.00 0.00 38.61 2.92
2341 5010 5.894393 TCATTTAAAGGACAAGTTTGGGACA 59.106 36.000 0.00 0.00 0.00 4.02
2342 5011 6.399639 TCATTTAAAGGACAAGTTTGGGAC 57.600 37.500 0.00 0.00 0.00 4.46
2343 5012 7.070571 ACATTCATTTAAAGGACAAGTTTGGGA 59.929 33.333 1.27 0.00 0.00 4.37
2344 5013 7.216494 ACATTCATTTAAAGGACAAGTTTGGG 58.784 34.615 1.27 0.00 0.00 4.12
2345 5014 9.927668 ATACATTCATTTAAAGGACAAGTTTGG 57.072 29.630 1.27 0.00 0.00 3.28
2353 5022 9.221775 CGTGCTAAATACATTCATTTAAAGGAC 57.778 33.333 1.27 0.00 31.67 3.85
2354 5023 9.168451 TCGTGCTAAATACATTCATTTAAAGGA 57.832 29.630 0.00 0.00 31.67 3.36
2355 5024 9.781834 TTCGTGCTAAATACATTCATTTAAAGG 57.218 29.630 0.00 0.00 31.67 3.11
2360 5029 9.988350 CTAACTTCGTGCTAAATACATTCATTT 57.012 29.630 0.00 0.00 32.91 2.32
2361 5030 9.162764 ACTAACTTCGTGCTAAATACATTCATT 57.837 29.630 0.00 0.00 0.00 2.57
2362 5031 8.604035 CACTAACTTCGTGCTAAATACATTCAT 58.396 33.333 0.00 0.00 0.00 2.57
2363 5032 7.959733 CACTAACTTCGTGCTAAATACATTCA 58.040 34.615 0.00 0.00 0.00 2.57
2376 5045 7.757097 AGATGTATTTAGCACTAACTTCGTG 57.243 36.000 0.00 0.00 35.53 4.35
2385 5054 9.780186 GTCCCTTAAATAGATGTATTTAGCACT 57.220 33.333 13.10 0.00 40.57 4.40
2386 5055 9.555727 TGTCCCTTAAATAGATGTATTTAGCAC 57.444 33.333 13.10 9.84 40.57 4.40
2395 5064 8.803235 GGAAAAGTTTGTCCCTTAAATAGATGT 58.197 33.333 0.00 0.00 0.00 3.06
2396 5065 7.968405 CGGAAAAGTTTGTCCCTTAAATAGATG 59.032 37.037 9.74 0.00 0.00 2.90
2397 5066 7.122204 CCGGAAAAGTTTGTCCCTTAAATAGAT 59.878 37.037 0.00 0.00 0.00 1.98
2398 5067 6.431852 CCGGAAAAGTTTGTCCCTTAAATAGA 59.568 38.462 0.00 0.00 0.00 1.98
2399 5068 6.431852 TCCGGAAAAGTTTGTCCCTTAAATAG 59.568 38.462 0.00 0.00 0.00 1.73
2400 5069 6.207221 GTCCGGAAAAGTTTGTCCCTTAAATA 59.793 38.462 5.23 0.00 0.00 1.40
2401 5070 5.010314 GTCCGGAAAAGTTTGTCCCTTAAAT 59.990 40.000 5.23 0.00 0.00 1.40
2402 5071 4.338964 GTCCGGAAAAGTTTGTCCCTTAAA 59.661 41.667 5.23 0.00 0.00 1.52
2403 5072 3.884693 GTCCGGAAAAGTTTGTCCCTTAA 59.115 43.478 5.23 0.00 0.00 1.85
2404 5073 3.117963 TGTCCGGAAAAGTTTGTCCCTTA 60.118 43.478 5.23 0.00 0.00 2.69
2405 5074 2.304092 GTCCGGAAAAGTTTGTCCCTT 58.696 47.619 5.23 0.00 0.00 3.95
2406 5075 1.213430 TGTCCGGAAAAGTTTGTCCCT 59.787 47.619 5.23 0.00 0.00 4.20
2407 5076 1.682740 TGTCCGGAAAAGTTTGTCCC 58.317 50.000 5.23 0.00 0.00 4.46
2408 5077 3.490249 CCTTTGTCCGGAAAAGTTTGTCC 60.490 47.826 24.70 6.45 33.61 4.02
2409 5078 3.379057 TCCTTTGTCCGGAAAAGTTTGTC 59.621 43.478 24.70 7.04 33.61 3.18
2410 5079 3.358118 TCCTTTGTCCGGAAAAGTTTGT 58.642 40.909 24.70 0.00 33.61 2.83
2411 5080 4.379339 TTCCTTTGTCCGGAAAAGTTTG 57.621 40.909 24.70 16.01 37.59 2.93
2418 5087 8.047911 TGTATAATGTATTTCCTTTGTCCGGAA 58.952 33.333 5.23 0.00 38.71 4.30
2419 5088 7.566569 TGTATAATGTATTTCCTTTGTCCGGA 58.433 34.615 0.00 0.00 0.00 5.14
2420 5089 7.795482 TGTATAATGTATTTCCTTTGTCCGG 57.205 36.000 0.00 0.00 0.00 5.14
2435 5104 9.042008 CCACGACTAAGCTTTTATGTATAATGT 57.958 33.333 3.20 0.00 0.00 2.71
2436 5105 8.009974 GCCACGACTAAGCTTTTATGTATAATG 58.990 37.037 3.20 0.00 0.00 1.90
2437 5106 7.931948 AGCCACGACTAAGCTTTTATGTATAAT 59.068 33.333 3.20 0.00 31.27 1.28
2438 5107 7.270047 AGCCACGACTAAGCTTTTATGTATAA 58.730 34.615 3.20 0.00 31.27 0.98
2439 5108 6.812998 AGCCACGACTAAGCTTTTATGTATA 58.187 36.000 3.20 0.00 31.27 1.47
2440 5109 5.671493 AGCCACGACTAAGCTTTTATGTAT 58.329 37.500 3.20 0.00 31.27 2.29
2441 5110 5.080969 AGCCACGACTAAGCTTTTATGTA 57.919 39.130 3.20 0.00 31.27 2.29
2442 5111 3.933332 GAGCCACGACTAAGCTTTTATGT 59.067 43.478 3.20 0.00 36.87 2.29
2443 5112 3.932710 TGAGCCACGACTAAGCTTTTATG 59.067 43.478 3.20 0.00 36.87 1.90
2444 5113 3.933332 GTGAGCCACGACTAAGCTTTTAT 59.067 43.478 3.20 0.00 36.87 1.40
2445 5114 3.006537 AGTGAGCCACGACTAAGCTTTTA 59.993 43.478 3.20 0.00 39.64 1.52
2464 5133 3.108144 CAAGGAAAAAGACGTGCAAGTG 58.892 45.455 10.87 0.00 0.00 3.16
2480 5149 3.087031 CCGTACTAGGTTCAGACAAGGA 58.913 50.000 0.00 0.00 0.00 3.36
2523 5192 5.952947 ACCAGTAGCTTTCATGAGTAGTAGT 59.047 40.000 0.00 0.00 0.00 2.73
2524 5193 6.458232 ACCAGTAGCTTTCATGAGTAGTAG 57.542 41.667 0.00 0.00 0.00 2.57
2525 5194 7.569639 CTACCAGTAGCTTTCATGAGTAGTA 57.430 40.000 0.00 0.00 0.00 1.82
2546 5215 1.211743 GGCCGGTTACGTTATGCTAC 58.788 55.000 1.90 0.00 38.78 3.58
2604 5350 1.002366 CATATGATAGCCTTCGCCGC 58.998 55.000 0.00 0.00 34.57 6.53
2611 5357 9.809096 CACGAATTTAGTATCATATGATAGCCT 57.191 33.333 22.97 19.07 37.67 4.58
2613 5359 9.087424 TGCACGAATTTAGTATCATATGATAGC 57.913 33.333 22.97 18.10 37.67 2.97
2617 5363 8.978539 GTCTTGCACGAATTTAGTATCATATGA 58.021 33.333 8.10 8.10 0.00 2.15
2618 5364 8.223769 GGTCTTGCACGAATTTAGTATCATATG 58.776 37.037 0.00 0.00 0.00 1.78
2619 5365 7.387948 GGGTCTTGCACGAATTTAGTATCATAT 59.612 37.037 0.00 0.00 0.00 1.78
2620 5366 6.704493 GGGTCTTGCACGAATTTAGTATCATA 59.296 38.462 0.00 0.00 0.00 2.15
2622 5368 4.873827 GGGTCTTGCACGAATTTAGTATCA 59.126 41.667 0.00 0.00 0.00 2.15
2624 5370 4.196971 GGGGTCTTGCACGAATTTAGTAT 58.803 43.478 0.00 0.00 0.00 2.12
2626 5372 2.433436 GGGGTCTTGCACGAATTTAGT 58.567 47.619 0.00 0.00 0.00 2.24
2627 5373 1.743394 GGGGGTCTTGCACGAATTTAG 59.257 52.381 0.00 0.00 0.00 1.85
2628 5374 1.828979 GGGGGTCTTGCACGAATTTA 58.171 50.000 0.00 0.00 0.00 1.40
2629 5375 1.241315 CGGGGGTCTTGCACGAATTT 61.241 55.000 0.00 0.00 0.00 1.82
2632 5378 4.323477 CCGGGGGTCTTGCACGAA 62.323 66.667 0.00 0.00 0.00 3.85
2650 6325 2.827423 ATCGCCCAGATGCAGAGG 59.173 61.111 0.00 0.00 38.36 3.69
2662 6337 2.340453 AAATGACCGCATGCATCGCC 62.340 55.000 19.57 2.12 34.26 5.54
2663 6338 0.526096 AAAATGACCGCATGCATCGC 60.526 50.000 19.57 3.47 34.26 4.58
2664 6339 2.753989 TAAAATGACCGCATGCATCG 57.246 45.000 19.57 6.69 34.26 3.84
2697 6372 9.436957 ACTGTTGTATGACTTTATAAGGTCTTG 57.563 33.333 23.46 10.41 34.01 3.02
2711 6386 6.872020 TGGCTTTAGTCTTACTGTTGTATGAC 59.128 38.462 11.70 11.70 45.97 3.06
2713 6388 7.254117 CGATGGCTTTAGTCTTACTGTTGTATG 60.254 40.741 0.00 0.00 0.00 2.39
2714 6389 6.757010 CGATGGCTTTAGTCTTACTGTTGTAT 59.243 38.462 0.00 0.00 0.00 2.29
2716 6391 4.929808 CGATGGCTTTAGTCTTACTGTTGT 59.070 41.667 0.00 0.00 0.00 3.32
2717 6392 4.929808 ACGATGGCTTTAGTCTTACTGTTG 59.070 41.667 0.00 0.00 0.00 3.33
2718 6393 5.047235 AGACGATGGCTTTAGTCTTACTGTT 60.047 40.000 0.00 0.00 40.64 3.16
2719 6394 4.463186 AGACGATGGCTTTAGTCTTACTGT 59.537 41.667 0.00 0.00 40.64 3.55
2722 6397 5.459434 GCTTAGACGATGGCTTTAGTCTTAC 59.541 44.000 14.28 5.13 42.99 2.34
2725 6400 3.447586 TGCTTAGACGATGGCTTTAGTCT 59.552 43.478 13.79 13.79 44.90 3.24
2727 6402 3.887621 TGCTTAGACGATGGCTTTAGT 57.112 42.857 0.00 0.00 0.00 2.24
2729 6404 3.932822 TGTTGCTTAGACGATGGCTTTA 58.067 40.909 0.00 0.00 0.00 1.85
2730 6405 2.778299 TGTTGCTTAGACGATGGCTTT 58.222 42.857 0.00 0.00 0.00 3.51
2731 6406 2.472695 TGTTGCTTAGACGATGGCTT 57.527 45.000 0.00 0.00 0.00 4.35
2732 6407 2.076863 GTTGTTGCTTAGACGATGGCT 58.923 47.619 0.00 0.00 0.00 4.75
2733 6408 2.076863 AGTTGTTGCTTAGACGATGGC 58.923 47.619 0.00 0.00 0.00 4.40
2734 6409 3.067106 ACAGTTGTTGCTTAGACGATGG 58.933 45.455 0.00 0.00 0.00 3.51
2735 6410 3.181540 CGACAGTTGTTGCTTAGACGATG 60.182 47.826 0.00 0.00 0.00 3.84
2737 6412 2.390938 CGACAGTTGTTGCTTAGACGA 58.609 47.619 0.00 0.00 0.00 4.20
2738 6413 2.837337 CGACAGTTGTTGCTTAGACG 57.163 50.000 0.00 0.00 0.00 4.18
2746 6421 1.865865 AGGTGTAGCGACAGTTGTTG 58.134 50.000 0.00 0.00 35.82 3.33
2747 6422 2.288640 GGTAGGTGTAGCGACAGTTGTT 60.289 50.000 0.00 0.00 35.82 2.83
2748 6423 1.271656 GGTAGGTGTAGCGACAGTTGT 59.728 52.381 0.00 0.00 35.82 3.32
2749 6424 1.403780 GGGTAGGTGTAGCGACAGTTG 60.404 57.143 0.00 0.00 35.82 3.16
2751 6426 0.251474 TGGGTAGGTGTAGCGACAGT 60.251 55.000 0.00 0.00 35.82 3.55
2752 6427 0.892755 TTGGGTAGGTGTAGCGACAG 59.107 55.000 0.00 0.00 35.82 3.51
2753 6428 1.563924 ATTGGGTAGGTGTAGCGACA 58.436 50.000 0.00 0.00 0.00 4.35
2754 6429 2.093869 TCAATTGGGTAGGTGTAGCGAC 60.094 50.000 5.42 0.00 0.00 5.19
2755 6430 2.181125 TCAATTGGGTAGGTGTAGCGA 58.819 47.619 5.42 0.00 0.00 4.93
2757 6432 5.531287 CCTTAATCAATTGGGTAGGTGTAGC 59.469 44.000 5.42 0.00 0.00 3.58
2759 6434 5.103855 CCCCTTAATCAATTGGGTAGGTGTA 60.104 44.000 5.42 0.00 38.03 2.90
2760 6435 4.325816 CCCCTTAATCAATTGGGTAGGTGT 60.326 45.833 5.42 0.00 38.03 4.16
2761 6436 4.215109 CCCCTTAATCAATTGGGTAGGTG 58.785 47.826 5.42 0.00 38.03 4.00
2762 6437 3.373767 GCCCCTTAATCAATTGGGTAGGT 60.374 47.826 5.42 0.00 38.57 3.08
2763 6438 3.230976 GCCCCTTAATCAATTGGGTAGG 58.769 50.000 5.42 7.57 38.57 3.18
2765 6440 2.938838 CGCCCCTTAATCAATTGGGTA 58.061 47.619 5.42 0.00 38.57 3.69
2766 6441 1.775385 CGCCCCTTAATCAATTGGGT 58.225 50.000 5.42 0.00 38.57 4.51
2767 6442 0.389025 GCGCCCCTTAATCAATTGGG 59.611 55.000 5.42 0.00 39.37 4.12
2768 6443 1.402787 AGCGCCCCTTAATCAATTGG 58.597 50.000 2.29 0.00 0.00 3.16
2769 6444 4.853924 ATTAGCGCCCCTTAATCAATTG 57.146 40.909 2.29 0.00 0.00 2.32
2770 6445 4.459337 GCTATTAGCGCCCCTTAATCAATT 59.541 41.667 2.29 0.00 0.00 2.32
2773 6448 2.290071 GGCTATTAGCGCCCCTTAATCA 60.290 50.000 2.29 0.00 43.62 2.57
2774 6449 2.357075 GGCTATTAGCGCCCCTTAATC 58.643 52.381 2.29 0.00 43.62 1.75
2775 6450 2.491675 GGCTATTAGCGCCCCTTAAT 57.508 50.000 2.29 4.16 43.62 1.40
2782 6457 2.669910 GCCCAGGCTATTAGCGCC 60.670 66.667 2.29 0.00 43.62 6.53
2783 6458 1.827399 TAGGCCCAGGCTATTAGCGC 61.827 60.000 8.89 0.00 43.62 5.92
2785 6460 3.370633 GGTATTAGGCCCAGGCTATTAGC 60.371 52.174 8.89 7.16 40.30 3.09
2786 6461 3.844211 TGGTATTAGGCCCAGGCTATTAG 59.156 47.826 8.89 0.00 40.30 1.73
2787 6462 3.876828 TGGTATTAGGCCCAGGCTATTA 58.123 45.455 8.89 1.40 40.30 0.98
2789 6464 2.433444 TGGTATTAGGCCCAGGCTAT 57.567 50.000 8.89 0.32 40.30 2.97
2791 6466 1.063942 GTTTGGTATTAGGCCCAGGCT 60.064 52.381 8.89 0.35 42.39 4.58
2792 6467 1.341581 TGTTTGGTATTAGGCCCAGGC 60.342 52.381 0.00 0.00 41.06 4.85
2793 6468 2.241176 TCTGTTTGGTATTAGGCCCAGG 59.759 50.000 0.00 0.00 31.04 4.45
2795 6470 2.645297 TGTCTGTTTGGTATTAGGCCCA 59.355 45.455 0.00 0.00 0.00 5.36
2796 6471 3.359695 TGTCTGTTTGGTATTAGGCCC 57.640 47.619 0.00 0.00 0.00 5.80
2797 6472 3.560068 CGATGTCTGTTTGGTATTAGGCC 59.440 47.826 0.00 0.00 0.00 5.19
2799 6474 4.188462 TGCGATGTCTGTTTGGTATTAGG 58.812 43.478 0.00 0.00 0.00 2.69
2800 6475 4.260375 GCTGCGATGTCTGTTTGGTATTAG 60.260 45.833 0.00 0.00 0.00 1.73
2801 6476 3.621268 GCTGCGATGTCTGTTTGGTATTA 59.379 43.478 0.00 0.00 0.00 0.98
2802 6477 2.420022 GCTGCGATGTCTGTTTGGTATT 59.580 45.455 0.00 0.00 0.00 1.89
2803 6478 2.009774 GCTGCGATGTCTGTTTGGTAT 58.990 47.619 0.00 0.00 0.00 2.73
2804 6479 1.438651 GCTGCGATGTCTGTTTGGTA 58.561 50.000 0.00 0.00 0.00 3.25
2805 6480 1.237285 GGCTGCGATGTCTGTTTGGT 61.237 55.000 0.00 0.00 0.00 3.67
2806 6481 1.236616 TGGCTGCGATGTCTGTTTGG 61.237 55.000 0.00 0.00 0.00 3.28
2808 6483 0.035317 TCTGGCTGCGATGTCTGTTT 59.965 50.000 0.00 0.00 0.00 2.83
2809 6484 0.671781 GTCTGGCTGCGATGTCTGTT 60.672 55.000 0.00 0.00 0.00 3.16
2810 6485 1.079543 GTCTGGCTGCGATGTCTGT 60.080 57.895 0.00 0.00 0.00 3.41
2811 6486 1.812922 GGTCTGGCTGCGATGTCTG 60.813 63.158 0.00 0.00 0.00 3.51
2812 6487 0.684479 TAGGTCTGGCTGCGATGTCT 60.684 55.000 0.00 0.00 0.00 3.41
2813 6488 0.175760 TTAGGTCTGGCTGCGATGTC 59.824 55.000 0.00 0.00 0.00 3.06
2814 6489 0.108138 GTTAGGTCTGGCTGCGATGT 60.108 55.000 0.00 0.00 0.00 3.06
2815 6490 0.108186 TGTTAGGTCTGGCTGCGATG 60.108 55.000 0.00 0.00 0.00 3.84
2816 6491 0.833287 ATGTTAGGTCTGGCTGCGAT 59.167 50.000 0.00 0.00 0.00 4.58
2818 6493 0.176680 AGATGTTAGGTCTGGCTGCG 59.823 55.000 0.00 0.00 0.00 5.18
2819 6494 3.133003 TCTTAGATGTTAGGTCTGGCTGC 59.867 47.826 0.00 0.00 0.00 5.25
2821 6496 4.615513 AGTCTTAGATGTTAGGTCTGGCT 58.384 43.478 0.00 0.00 0.00 4.75
2822 6497 5.105310 TCAAGTCTTAGATGTTAGGTCTGGC 60.105 44.000 0.00 0.00 0.00 4.85
2823 6498 6.406400 CCTCAAGTCTTAGATGTTAGGTCTGG 60.406 46.154 0.00 0.00 0.00 3.86
2824 6499 6.153680 ACCTCAAGTCTTAGATGTTAGGTCTG 59.846 42.308 4.26 0.00 28.80 3.51
2825 6500 6.257586 ACCTCAAGTCTTAGATGTTAGGTCT 58.742 40.000 4.26 0.00 28.80 3.85
2826 6501 6.406065 GGACCTCAAGTCTTAGATGTTAGGTC 60.406 46.154 19.49 19.49 46.28 3.85
2827 6502 5.422650 GGACCTCAAGTCTTAGATGTTAGGT 59.577 44.000 8.38 8.38 45.54 3.08
2828 6503 5.163395 GGGACCTCAAGTCTTAGATGTTAGG 60.163 48.000 0.00 0.00 45.54 2.69
2829 6504 5.422331 TGGGACCTCAAGTCTTAGATGTTAG 59.578 44.000 0.00 0.00 45.54 2.34
2832 6507 3.791320 TGGGACCTCAAGTCTTAGATGT 58.209 45.455 0.00 0.00 45.54 3.06
2833 6508 4.508662 GTTGGGACCTCAAGTCTTAGATG 58.491 47.826 0.00 0.00 45.54 2.90
2834 6509 3.519913 GGTTGGGACCTCAAGTCTTAGAT 59.480 47.826 0.00 0.00 45.54 1.98
2836 6511 2.637872 TGGTTGGGACCTCAAGTCTTAG 59.362 50.000 0.00 0.00 46.66 2.18
2837 6512 2.637872 CTGGTTGGGACCTCAAGTCTTA 59.362 50.000 0.00 0.00 46.66 2.10
2839 6514 1.059913 CTGGTTGGGACCTCAAGTCT 58.940 55.000 0.00 0.00 46.66 3.24
2840 6515 0.036875 CCTGGTTGGGACCTCAAGTC 59.963 60.000 0.00 0.00 46.66 3.01
2841 6516 0.401395 TCCTGGTTGGGACCTCAAGT 60.401 55.000 0.00 0.00 46.66 3.16
2842 6517 2.463441 TCCTGGTTGGGACCTCAAG 58.537 57.895 0.00 0.00 46.66 3.02
2843 6518 4.761163 TCCTGGTTGGGACCTCAA 57.239 55.556 0.00 0.00 46.66 3.02
2858 6533 4.910585 CATACCCGGCAGGCGTCC 62.911 72.222 16.17 0.00 40.58 4.79
2885 6560 4.803426 GAGGAGCACGCCGGACTG 62.803 72.222 5.05 0.00 0.00 3.51
2887 6562 4.373116 TTGAGGAGCACGCCGGAC 62.373 66.667 5.05 0.00 0.00 4.79
2888 6563 4.373116 GTTGAGGAGCACGCCGGA 62.373 66.667 5.05 0.00 0.00 5.14
2890 6565 4.680237 TGGTTGAGGAGCACGCCG 62.680 66.667 0.00 0.00 0.00 6.46
2891 6566 2.743928 CTGGTTGAGGAGCACGCC 60.744 66.667 0.00 0.00 0.00 5.68
2892 6567 2.743928 CCTGGTTGAGGAGCACGC 60.744 66.667 0.00 0.00 46.33 5.34
2893 6568 3.059982 TCCTGGTTGAGGAGCACG 58.940 61.111 0.00 0.00 46.96 5.34
2908 6583 2.279517 CATACTCGGCAGGCGTCC 60.280 66.667 17.01 0.00 0.00 4.79
2909 6584 1.299468 CTCATACTCGGCAGGCGTC 60.299 63.158 17.01 0.00 0.00 5.19
2910 6585 2.786495 CCTCATACTCGGCAGGCGT 61.786 63.158 17.01 0.00 0.00 5.68
2911 6586 2.028190 CCTCATACTCGGCAGGCG 59.972 66.667 10.80 10.80 0.00 5.52
2912 6587 2.280457 GCCTCATACTCGGCAGGC 60.280 66.667 0.00 0.00 45.59 4.85
2917 6592 4.647615 CGGCGGCCTCATACTCGG 62.648 72.222 18.34 0.00 0.00 4.63
2938 6613 0.819582 GATGGATTGGTGCCAAGTGG 59.180 55.000 9.65 0.00 39.21 4.00
2939 6614 1.843368 AGATGGATTGGTGCCAAGTG 58.157 50.000 9.65 0.00 39.21 3.16
2940 6615 2.225091 TGAAGATGGATTGGTGCCAAGT 60.225 45.455 9.65 0.00 39.21 3.16
2941 6616 2.426024 CTGAAGATGGATTGGTGCCAAG 59.574 50.000 9.65 0.00 39.21 3.61
2944 6619 2.295885 CTCTGAAGATGGATTGGTGCC 58.704 52.381 0.00 0.00 0.00 5.01
2945 6620 1.674962 GCTCTGAAGATGGATTGGTGC 59.325 52.381 0.00 0.00 0.00 5.01
2946 6621 2.943690 CAGCTCTGAAGATGGATTGGTG 59.056 50.000 0.00 0.00 35.22 4.17
2947 6622 2.575279 ACAGCTCTGAAGATGGATTGGT 59.425 45.455 3.60 0.00 43.33 3.67
2948 6623 3.278668 ACAGCTCTGAAGATGGATTGG 57.721 47.619 3.60 0.00 43.33 3.16
2949 6624 4.809958 CAGTACAGCTCTGAAGATGGATTG 59.190 45.833 3.60 0.00 43.33 2.67
2950 6625 4.469227 ACAGTACAGCTCTGAAGATGGATT 59.531 41.667 7.84 0.00 43.33 3.01
2951 6626 4.029520 ACAGTACAGCTCTGAAGATGGAT 58.970 43.478 7.84 0.00 43.33 3.41
2952 6627 3.435275 ACAGTACAGCTCTGAAGATGGA 58.565 45.455 7.84 0.00 43.33 3.41
2953 6628 3.883830 ACAGTACAGCTCTGAAGATGG 57.116 47.619 7.84 0.00 43.33 3.51
2954 6629 3.370366 GCAACAGTACAGCTCTGAAGATG 59.630 47.826 7.84 0.00 44.61 2.90
2957 6632 2.759191 TGCAACAGTACAGCTCTGAAG 58.241 47.619 7.84 1.57 36.81 3.02
2958 6633 2.908688 TGCAACAGTACAGCTCTGAA 57.091 45.000 7.84 0.00 36.81 3.02
2959 6634 2.672195 CGATGCAACAGTACAGCTCTGA 60.672 50.000 7.84 0.00 36.81 3.27
2960 6635 1.657594 CGATGCAACAGTACAGCTCTG 59.342 52.381 0.00 0.00 38.68 3.35
2961 6636 1.546029 TCGATGCAACAGTACAGCTCT 59.454 47.619 0.00 0.00 0.00 4.09
2962 6637 1.656095 GTCGATGCAACAGTACAGCTC 59.344 52.381 0.00 0.00 0.00 4.09
2964 6639 0.721718 GGTCGATGCAACAGTACAGC 59.278 55.000 0.00 0.00 0.00 4.40
2965 6640 2.370281 AGGTCGATGCAACAGTACAG 57.630 50.000 0.00 0.00 0.00 2.74
2966 6641 2.412870 CAAGGTCGATGCAACAGTACA 58.587 47.619 0.00 0.00 0.00 2.90
2967 6642 1.128692 GCAAGGTCGATGCAACAGTAC 59.871 52.381 4.64 0.00 43.29 2.73
2969 6644 1.237285 GGCAAGGTCGATGCAACAGT 61.237 55.000 11.32 0.00 45.60 3.55
2970 6645 1.503542 GGCAAGGTCGATGCAACAG 59.496 57.895 11.32 0.00 45.60 3.16
2971 6646 1.971167 GGGCAAGGTCGATGCAACA 60.971 57.895 11.32 0.00 45.60 3.33
2972 6647 2.877691 GGGCAAGGTCGATGCAAC 59.122 61.111 11.32 0.52 45.60 4.17
2982 6657 2.187946 CAGCTAGACCGGGCAAGG 59.812 66.667 11.69 0.00 37.30 3.61
2983 6658 2.512515 GCAGCTAGACCGGGCAAG 60.513 66.667 11.69 1.80 0.00 4.01
2987 6662 4.537433 GGCAGCAGCTAGACCGGG 62.537 72.222 6.32 0.00 41.70 5.73



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.