Multiple sequence alignment - TraesCS2D01G492900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G492900 chr2D 100.000 6829 0 0 1 6829 590373911 590367083 0.000000e+00 12611.0
1 TraesCS2D01G492900 chr2D 98.587 283 3 1 4381 4663 540821228 540821509 3.680000e-137 499.0
2 TraesCS2D01G492900 chr2D 94.000 150 9 0 4664 4813 647763212 647763361 1.920000e-55 228.0
3 TraesCS2D01G492900 chr2D 94.697 132 5 2 4252 4382 406639766 406639896 3.230000e-48 204.0
4 TraesCS2D01G492900 chr2A 91.310 3878 195 63 460 4281 724752866 724749075 0.000000e+00 5164.0
5 TraesCS2D01G492900 chr2A 94.914 1927 72 11 4811 6718 724749089 724747170 0.000000e+00 2992.0
6 TraesCS2D01G492900 chr2A 90.618 437 31 7 24 453 724753252 724752819 7.680000e-159 571.0
7 TraesCS2D01G492900 chr2A 99.346 306 2 0 6524 6829 724746930 724746625 7.740000e-154 555.0
8 TraesCS2D01G492900 chr2A 98.974 195 2 0 6524 6718 724747148 724746954 3.920000e-92 350.0
9 TraesCS2D01G492900 chr2B 92.496 2732 129 29 829 3535 715606520 715603840 0.000000e+00 3840.0
10 TraesCS2D01G492900 chr2B 94.922 2048 66 11 4811 6829 715602260 715600222 0.000000e+00 3171.0
11 TraesCS2D01G492900 chr2B 95.045 444 16 4 3581 4022 715603841 715603402 0.000000e+00 693.0
12 TraesCS2D01G492900 chr2B 92.222 270 10 4 4022 4281 715602514 715602246 8.360000e-99 372.0
13 TraesCS2D01G492900 chr3A 85.934 1365 126 28 4816 6139 145621592 145620253 0.000000e+00 1397.0
14 TraesCS2D01G492900 chr3A 83.155 1591 154 56 2395 3936 145624089 145622564 0.000000e+00 1349.0
15 TraesCS2D01G492900 chr3A 83.676 974 116 11 998 1968 145625065 145624132 0.000000e+00 878.0
16 TraesCS2D01G492900 chr3A 88.760 258 15 9 4022 4271 145621847 145621596 3.090000e-78 303.0
17 TraesCS2D01G492900 chr3B 84.323 1027 117 25 2038 3044 188736898 188735896 0.000000e+00 965.0
18 TraesCS2D01G492900 chr3B 82.988 676 91 16 5611 6267 188702585 188701915 2.120000e-164 590.0
19 TraesCS2D01G492900 chr3B 85.682 447 34 7 4820 5246 188712463 188712027 1.750000e-120 444.0
20 TraesCS2D01G492900 chr3B 81.441 555 76 12 1395 1940 188737435 188736899 4.890000e-116 429.0
21 TraesCS2D01G492900 chr3B 79.969 654 70 24 3090 3741 188735887 188735293 6.330000e-115 425.0
22 TraesCS2D01G492900 chr3B 97.917 48 1 0 6697 6744 188614992 188614945 4.390000e-12 84.2
23 TraesCS2D01G492900 chr5D 97.902 286 5 1 4382 4667 450608769 450609053 1.710000e-135 494.0
24 TraesCS2D01G492900 chr5D 97.552 286 4 3 4382 4667 430510221 430510503 2.860000e-133 486.0
25 TraesCS2D01G492900 chr5D 98.000 150 3 0 4664 4813 216099688 216099539 1.890000e-65 261.0
26 TraesCS2D01G492900 chr5D 94.000 150 9 0 4664 4813 485912470 485912321 1.920000e-55 228.0
27 TraesCS2D01G492900 chr5D 100.000 115 0 0 4268 4382 353750372 353750258 5.370000e-51 213.0
28 TraesCS2D01G492900 chr4A 97.880 283 5 1 4381 4663 11842762 11843043 7.960000e-134 488.0
29 TraesCS2D01G492900 chr4A 93.333 150 10 0 4664 4813 165816396 165816545 8.910000e-54 222.0
30 TraesCS2D01G492900 chr4A 93.333 150 10 0 4664 4813 374622404 374622553 8.910000e-54 222.0
31 TraesCS2D01G492900 chr3D 97.222 288 8 0 4381 4668 536025587 536025874 7.960000e-134 488.0
32 TraesCS2D01G492900 chr3D 96.259 294 9 2 4382 4675 454197403 454197112 1.330000e-131 481.0
33 TraesCS2D01G492900 chr1D 96.886 289 7 2 4381 4669 316011054 316011340 3.700000e-132 483.0
34 TraesCS2D01G492900 chr5B 95.652 299 9 4 4371 4668 439263699 439263994 1.720000e-130 477.0
35 TraesCS2D01G492900 chr5B 99.130 115 1 0 4268 4382 61502791 61502905 2.500000e-49 207.0
36 TraesCS2D01G492900 chr5B 99.130 115 1 0 4268 4382 273258509 273258395 2.500000e-49 207.0
37 TraesCS2D01G492900 chr1B 95.638 298 9 4 4375 4672 121564352 121564645 6.200000e-130 475.0
38 TraesCS2D01G492900 chr7D 100.000 149 0 0 4664 4812 205550093 205550241 6.750000e-70 276.0
39 TraesCS2D01G492900 chr7D 100.000 115 0 0 4268 4382 205549981 205550095 5.370000e-51 213.0
40 TraesCS2D01G492900 chr7D 97.500 120 3 0 4263 4382 78042679 78042560 8.980000e-49 206.0
41 TraesCS2D01G492900 chr7D 98.276 116 2 0 4267 4382 96378914 96378799 3.230000e-48 204.0
42 TraesCS2D01G492900 chrUn 94.000 150 9 0 4664 4813 24269983 24270132 1.920000e-55 228.0
43 TraesCS2D01G492900 chrUn 93.960 149 9 0 4664 4812 92971019 92970871 6.890000e-55 226.0
44 TraesCS2D01G492900 chr6D 91.358 162 13 1 4664 4824 141141608 141141769 3.210000e-53 220.0
45 TraesCS2D01G492900 chr6D 98.305 118 2 0 4265 4382 35975585 35975702 2.500000e-49 207.0
46 TraesCS2D01G492900 chr6D 98.276 116 2 0 4267 4382 203349389 203349274 3.230000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G492900 chr2D 590367083 590373911 6828 True 12611.000000 12611 100.00000 1 6829 1 chr2D.!!$R1 6828
1 TraesCS2D01G492900 chr2A 724746625 724753252 6627 True 1926.400000 5164 95.03240 24 6829 5 chr2A.!!$R1 6805
2 TraesCS2D01G492900 chr2B 715600222 715606520 6298 True 2019.000000 3840 93.67125 829 6829 4 chr2B.!!$R1 6000
3 TraesCS2D01G492900 chr3A 145620253 145625065 4812 True 981.750000 1397 85.38125 998 6139 4 chr3A.!!$R1 5141
4 TraesCS2D01G492900 chr3B 188735293 188737435 2142 True 606.333333 965 81.91100 1395 3741 3 chr3B.!!$R4 2346
5 TraesCS2D01G492900 chr3B 188701915 188702585 670 True 590.000000 590 82.98800 5611 6267 1 chr3B.!!$R2 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 220 0.036483 GGCGACAATTGGGCCATTTT 60.036 50.000 28.00 0.93 46.13 1.82 F
1359 1381 0.110419 CTTCCGCACGCGATTTTCAA 60.110 50.000 15.93 0.00 42.83 2.69 F
2331 2382 0.325933 TGGCCTCAATCCAGTCACTG 59.674 55.000 3.32 0.00 0.00 3.66 F
2578 2634 3.274288 GAAGAGAACCTCCATGCGATTT 58.726 45.455 0.00 0.00 0.00 2.17 F
4027 4811 0.383231 CGGCCCTCATCATTTTGAGC 59.617 55.000 0.00 0.00 41.50 4.26 F
4477 6165 0.478507 CCTGTTTGGTTCCTGGGACT 59.521 55.000 4.84 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1886 1922 1.338973 AGCAGAACAAATGTGGTGCTG 59.661 47.619 17.48 10.23 42.70 4.41 R
3247 3320 1.325355 TGGACGACCGGATATCCTTC 58.675 55.000 19.61 13.87 39.42 3.46 R
3839 4009 1.408702 CCAAAAAGGATATGGGTGCCG 59.591 52.381 0.00 0.00 41.22 5.69 R
4458 6146 0.478507 AGTCCCAGGAACCAAACAGG 59.521 55.000 0.00 0.00 45.67 4.00 R
4835 6524 1.480137 CAAAATGCCCCGCAAATCCTA 59.520 47.619 0.00 0.00 43.62 2.94 R
6274 8018 0.037419 GGGCCACAACATTCGCAAAT 60.037 50.000 4.39 0.00 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 4.196193 TGAATACTTTGTCCCTTATGGCG 58.804 43.478 0.00 0.00 0.00 5.69
86 87 0.119561 TAGCCCCTACAGGTTCCCAA 59.880 55.000 0.00 0.00 0.00 4.12
117 118 4.467082 TCTTTTATGGTCTAACCCACGCTA 59.533 41.667 0.00 0.00 37.50 4.26
118 119 5.129815 TCTTTTATGGTCTAACCCACGCTAT 59.870 40.000 0.00 0.00 37.50 2.97
125 126 2.034179 TCTAACCCACGCTATGACGATG 59.966 50.000 0.00 0.00 36.70 3.84
137 139 0.320334 TGACGATGCCTTTCGCTCAA 60.320 50.000 0.00 0.00 42.82 3.02
185 188 4.424711 GGAGGCAATGTGGGGCGA 62.425 66.667 0.00 0.00 35.71 5.54
217 220 0.036483 GGCGACAATTGGGCCATTTT 60.036 50.000 28.00 0.93 46.13 1.82
227 230 1.846439 TGGGCCATTTTGTTTTTGGGA 59.154 42.857 0.00 0.00 0.00 4.37
228 231 2.242196 TGGGCCATTTTGTTTTTGGGAA 59.758 40.909 0.00 0.00 0.00 3.97
235 238 6.917477 GCCATTTTGTTTTTGGGAAAAGATTC 59.083 34.615 0.00 0.00 35.53 2.52
239 242 8.956533 TTTTGTTTTTGGGAAAAGATTCTAGG 57.043 30.769 0.00 0.00 35.53 3.02
267 270 7.173390 GCTTCTAGTCTGGCTTTTCTTTTTCTA 59.827 37.037 0.00 0.00 0.00 2.10
351 358 8.977267 AAATTCTTGAACCATTTTCATTTCCA 57.023 26.923 0.00 0.00 0.00 3.53
472 480 9.820725 TCATGAAAATTTCAAACTCATGAACTT 57.179 25.926 21.76 0.00 45.70 2.66
540 548 6.902341 TCACGAAAATTCTCTCAAATTCAGG 58.098 36.000 0.00 0.00 0.00 3.86
629 638 6.638873 TGCACGTTCAAATTCGTTATCATTTT 59.361 30.769 0.00 0.00 38.23 1.82
799 808 4.102210 CCAATAAGAGAGGAATGAGCAGGA 59.898 45.833 0.00 0.00 0.00 3.86
824 835 0.798776 AAAGCCGATCAAGCGAACTG 59.201 50.000 0.00 0.00 34.64 3.16
826 837 3.093278 CCGATCAAGCGAACTGGC 58.907 61.111 0.00 0.00 0.00 4.85
850 861 1.167155 TAGCGAGCCTTCCTAGCGAG 61.167 60.000 0.00 0.00 45.57 5.03
851 862 2.482333 GCGAGCCTTCCTAGCGAGA 61.482 63.158 0.00 0.00 32.51 4.04
852 863 2.005960 GCGAGCCTTCCTAGCGAGAA 62.006 60.000 0.00 0.00 32.51 2.87
857 868 0.179097 CCTTCCTAGCGAGAACCAGC 60.179 60.000 0.00 0.00 0.00 4.85
899 911 1.597027 CGGCCCCGCTAAATGGTAG 60.597 63.158 0.00 0.00 0.00 3.18
900 912 1.530283 GGCCCCGCTAAATGGTAGT 59.470 57.895 0.00 0.00 0.00 2.73
901 913 0.760572 GGCCCCGCTAAATGGTAGTA 59.239 55.000 0.00 0.00 0.00 1.82
902 914 1.270678 GGCCCCGCTAAATGGTAGTAG 60.271 57.143 0.00 0.00 0.00 2.57
903 915 1.876837 GCCCCGCTAAATGGTAGTAGC 60.877 57.143 0.00 0.00 39.50 3.58
904 916 1.692519 CCCCGCTAAATGGTAGTAGCT 59.307 52.381 0.35 0.00 40.51 3.32
905 917 2.104281 CCCCGCTAAATGGTAGTAGCTT 59.896 50.000 0.00 0.00 40.51 3.74
906 918 3.391049 CCCGCTAAATGGTAGTAGCTTC 58.609 50.000 0.00 0.00 40.51 3.86
907 919 3.181469 CCCGCTAAATGGTAGTAGCTTCA 60.181 47.826 0.00 0.00 40.51 3.02
908 920 4.439057 CCGCTAAATGGTAGTAGCTTCAA 58.561 43.478 0.00 0.00 40.51 2.69
991 1013 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
992 1014 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
993 1015 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1140 1162 3.866582 CCGCCTCCTCATCCCCAC 61.867 72.222 0.00 0.00 0.00 4.61
1197 1219 1.490693 GGCACTACGCGTCATCCATG 61.491 60.000 18.63 7.49 43.84 3.66
1205 1227 0.811616 GCGTCATCCATGTCCAGACC 60.812 60.000 0.00 0.00 0.00 3.85
1351 1373 0.435008 GATAATAGCTTCCGCACGCG 59.565 55.000 3.53 3.53 39.10 6.01
1358 1380 1.495509 CTTCCGCACGCGATTTTCA 59.504 52.632 15.93 0.00 42.83 2.69
1359 1381 0.110419 CTTCCGCACGCGATTTTCAA 60.110 50.000 15.93 0.00 42.83 2.69
1363 1385 0.861450 CGCACGCGATTTTCAATCCC 60.861 55.000 15.93 0.00 42.83 3.85
1389 1411 2.877097 TGTTGAATTCCTAGCCTGCA 57.123 45.000 2.27 0.00 0.00 4.41
1393 1416 3.204306 TGAATTCCTAGCCTGCATCTG 57.796 47.619 2.27 0.00 0.00 2.90
1399 1422 4.077300 TCCTAGCCTGCATCTGTAATTG 57.923 45.455 0.00 0.00 0.00 2.32
1405 1428 3.489738 GCCTGCATCTGTAATTGCGAATT 60.490 43.478 0.00 0.00 41.80 2.17
1453 1476 3.976701 AACGGATGCTGGGAAGGCG 62.977 63.158 0.00 0.00 0.00 5.52
1709 1735 6.525121 TTCTGTCGATGTTGAACTAGTTTG 57.475 37.500 10.02 0.00 0.00 2.93
1710 1736 4.447724 TCTGTCGATGTTGAACTAGTTTGC 59.552 41.667 10.02 4.04 0.00 3.68
1886 1922 5.179533 GGTTGGTCTCTCTGACTTATTTCC 58.820 45.833 0.00 0.00 44.74 3.13
1904 1940 1.955778 TCCAGCACCACATTTGTTCTG 59.044 47.619 0.00 0.00 0.00 3.02
2045 2083 7.081349 TGAACGGTCACAATAGCAAAATTAAG 58.919 34.615 0.00 0.00 0.00 1.85
2064 2102 4.644103 AAGCATGAAGGAAATTGGATCG 57.356 40.909 0.00 0.00 0.00 3.69
2113 2152 5.415701 GGATCAATATTGACAACACACCAGT 59.584 40.000 20.19 0.00 40.49 4.00
2204 2243 4.219033 CAATGTCGAAACTTGCCAGTAAC 58.781 43.478 0.00 0.00 30.68 2.50
2270 2321 6.460676 GCAAATCAACTTTGGCTATGAGCTAT 60.461 38.462 0.00 0.00 43.73 2.97
2331 2382 0.325933 TGGCCTCAATCCAGTCACTG 59.674 55.000 3.32 0.00 0.00 3.66
2422 2475 9.520515 AGGTGTGTATTTACTTCATGAGATTTT 57.479 29.630 0.00 0.00 0.00 1.82
2460 2513 7.653311 GTCCTATGCTTGAAAGTTGAAATTTGT 59.347 33.333 0.00 0.00 0.00 2.83
2578 2634 3.274288 GAAGAGAACCTCCATGCGATTT 58.726 45.455 0.00 0.00 0.00 2.17
2579 2635 3.356529 AGAGAACCTCCATGCGATTTT 57.643 42.857 0.00 0.00 0.00 1.82
2608 2667 4.523943 TGTTGGAATAGCTTTGCTGATTGT 59.476 37.500 0.00 0.00 40.10 2.71
2800 2859 7.090808 GCGTATCATTTCAGTACTGATATGGA 58.909 38.462 35.68 27.49 44.05 3.41
2851 2918 4.630111 CCCTTGCACATTATTGTTGTGTT 58.370 39.130 5.78 0.00 44.96 3.32
2890 2957 3.565307 TGGTTGCCATCTGTTTCTTCTT 58.435 40.909 0.00 0.00 0.00 2.52
2898 2965 5.569630 GCCATCTGTTTCTTCTTACTGGAGA 60.570 44.000 0.00 0.00 0.00 3.71
3016 3089 7.071071 TGTGATATAGATGGTGAGGTGATGAAA 59.929 37.037 0.00 0.00 0.00 2.69
3041 3114 9.448438 AACATCAAGAAGTATACTGTTTATGCA 57.552 29.630 6.06 0.00 0.00 3.96
3042 3115 9.448438 ACATCAAGAAGTATACTGTTTATGCAA 57.552 29.630 6.06 0.00 0.00 4.08
3043 3116 9.926751 CATCAAGAAGTATACTGTTTATGCAAG 57.073 33.333 6.06 0.00 0.00 4.01
3044 3117 9.672673 ATCAAGAAGTATACTGTTTATGCAAGT 57.327 29.630 6.06 0.00 0.00 3.16
3055 3128 6.918022 ACTGTTTATGCAAGTAACTTCTTTGC 59.082 34.615 0.00 1.75 0.00 3.68
3056 3129 5.912396 TGTTTATGCAAGTAACTTCTTTGCG 59.088 36.000 0.00 0.00 0.00 4.85
3057 3130 5.682943 TTATGCAAGTAACTTCTTTGCGT 57.317 34.783 8.06 8.06 0.00 5.24
3058 3131 4.568152 ATGCAAGTAACTTCTTTGCGTT 57.432 36.364 0.00 0.00 0.00 4.84
3059 3132 5.682943 ATGCAAGTAACTTCTTTGCGTTA 57.317 34.783 0.00 0.00 0.00 3.18
3060 3133 5.487153 TGCAAGTAACTTCTTTGCGTTAA 57.513 34.783 4.28 0.00 0.00 2.01
3061 3134 5.507077 TGCAAGTAACTTCTTTGCGTTAAG 58.493 37.500 4.28 0.00 0.00 1.85
3062 3135 4.909880 GCAAGTAACTTCTTTGCGTTAAGG 59.090 41.667 0.00 0.00 0.00 2.69
3063 3136 4.744136 AGTAACTTCTTTGCGTTAAGGC 57.256 40.909 13.14 13.14 0.00 4.35
3067 3140 4.004196 ACTTCTTTGCGTTAAGGCTAGT 57.996 40.909 19.89 12.15 0.00 2.57
3182 3255 4.089361 TCTTTGAGAGAGGCAGTATCACA 58.911 43.478 0.00 0.00 0.00 3.58
3313 3387 6.456501 GTTAAGGCTAGTTCTCAGTCTTTCA 58.543 40.000 0.00 0.00 38.79 2.69
3500 3588 9.793252 ATAAGCAATATGATTTCAACTTGTGAC 57.207 29.630 0.00 0.00 35.39 3.67
3559 3647 8.431910 AAGTACACTATGAAGTTTCCTAAGGA 57.568 34.615 0.00 0.00 31.97 3.36
3560 3648 8.431910 AGTACACTATGAAGTTTCCTAAGGAA 57.568 34.615 0.00 0.00 40.27 3.36
3561 3649 9.047947 AGTACACTATGAAGTTTCCTAAGGAAT 57.952 33.333 0.00 0.00 41.71 3.01
3562 3650 9.099454 GTACACTATGAAGTTTCCTAAGGAATG 57.901 37.037 0.00 0.00 41.71 2.67
3563 3651 7.690256 ACACTATGAAGTTTCCTAAGGAATGT 58.310 34.615 0.00 0.00 41.71 2.71
3564 3652 8.822805 ACACTATGAAGTTTCCTAAGGAATGTA 58.177 33.333 0.00 0.00 41.71 2.29
3565 3653 9.319143 CACTATGAAGTTTCCTAAGGAATGTAG 57.681 37.037 0.00 0.00 41.71 2.74
3566 3654 9.268282 ACTATGAAGTTTCCTAAGGAATGTAGA 57.732 33.333 0.00 0.00 41.71 2.59
3569 3657 6.879458 TGAAGTTTCCTAAGGAATGTAGAAGC 59.121 38.462 0.00 0.00 41.71 3.86
3570 3658 6.374417 AGTTTCCTAAGGAATGTAGAAGCA 57.626 37.500 0.00 0.00 41.71 3.91
3571 3659 6.779860 AGTTTCCTAAGGAATGTAGAAGCAA 58.220 36.000 0.00 0.00 41.71 3.91
3572 3660 7.231467 AGTTTCCTAAGGAATGTAGAAGCAAA 58.769 34.615 0.00 0.00 41.71 3.68
3573 3661 7.391833 AGTTTCCTAAGGAATGTAGAAGCAAAG 59.608 37.037 0.00 0.00 41.71 2.77
3574 3662 5.186198 TCCTAAGGAATGTAGAAGCAAAGC 58.814 41.667 0.00 0.00 0.00 3.51
3575 3663 4.943705 CCTAAGGAATGTAGAAGCAAAGCA 59.056 41.667 0.00 0.00 0.00 3.91
3576 3664 5.591877 CCTAAGGAATGTAGAAGCAAAGCAT 59.408 40.000 0.00 0.00 0.00 3.79
3577 3665 6.767902 CCTAAGGAATGTAGAAGCAAAGCATA 59.232 38.462 0.00 0.00 0.00 3.14
3578 3666 7.446625 CCTAAGGAATGTAGAAGCAAAGCATAT 59.553 37.037 0.00 0.00 0.00 1.78
3579 3667 9.494271 CTAAGGAATGTAGAAGCAAAGCATATA 57.506 33.333 0.00 0.00 0.00 0.86
3761 3924 6.098409 CCTGGTGTATTTCTACAGGTACATCT 59.902 42.308 0.00 0.00 42.83 2.90
3800 3963 9.706691 CTTGAATAGTTGTAGAAGTTGGAAGTA 57.293 33.333 0.00 0.00 0.00 2.24
3839 4009 2.860136 GGCTTTGTGCAAGTGTTCTTTC 59.140 45.455 0.00 0.00 45.15 2.62
3853 4023 1.507140 TCTTTCGGCACCCATATCCT 58.493 50.000 0.00 0.00 0.00 3.24
3858 4028 2.374184 TCGGCACCCATATCCTTTTTG 58.626 47.619 0.00 0.00 0.00 2.44
3938 4114 4.677182 ACTGAATCAGGCACCCTAATTTT 58.323 39.130 15.38 0.00 35.51 1.82
3939 4115 5.826643 ACTGAATCAGGCACCCTAATTTTA 58.173 37.500 15.38 0.00 35.51 1.52
3940 4116 6.252995 ACTGAATCAGGCACCCTAATTTTAA 58.747 36.000 15.38 0.00 35.51 1.52
3985 4768 4.082679 TGTTTATTTTTCAATCGACGGGGG 60.083 41.667 0.00 0.00 0.00 5.40
4022 4806 0.620556 AGTGTCGGCCCTCATCATTT 59.379 50.000 0.00 0.00 0.00 2.32
4024 4808 1.133025 GTGTCGGCCCTCATCATTTTG 59.867 52.381 0.00 0.00 0.00 2.44
4027 4811 0.383231 CGGCCCTCATCATTTTGAGC 59.617 55.000 0.00 0.00 41.50 4.26
4028 4812 1.477553 GGCCCTCATCATTTTGAGCA 58.522 50.000 0.00 0.00 41.50 4.26
4029 4813 1.826720 GGCCCTCATCATTTTGAGCAA 59.173 47.619 0.00 0.00 41.50 3.91
4212 5900 4.645535 TGTCAGCTGATTACTTTCTGCTT 58.354 39.130 21.47 0.00 45.26 3.91
4265 5953 4.154737 TGCTCATCTTCCATCGAACTTTTG 59.845 41.667 0.00 0.00 0.00 2.44
4267 5955 5.065731 GCTCATCTTCCATCGAACTTTTGAT 59.934 40.000 0.00 0.00 0.00 2.57
4268 5956 6.258727 GCTCATCTTCCATCGAACTTTTGATA 59.741 38.462 0.00 0.00 30.21 2.15
4269 5957 7.539712 TCATCTTCCATCGAACTTTTGATAC 57.460 36.000 0.00 0.00 30.21 2.24
4270 5958 7.331026 TCATCTTCCATCGAACTTTTGATACT 58.669 34.615 0.00 0.00 30.21 2.12
4271 5959 7.492669 TCATCTTCCATCGAACTTTTGATACTC 59.507 37.037 0.00 0.00 30.21 2.59
4272 5960 6.106673 TCTTCCATCGAACTTTTGATACTCC 58.893 40.000 0.00 0.00 30.21 3.85
4273 5961 4.766375 TCCATCGAACTTTTGATACTCCC 58.234 43.478 0.00 0.00 30.21 4.30
4274 5962 4.469945 TCCATCGAACTTTTGATACTCCCT 59.530 41.667 0.00 0.00 30.21 4.20
4275 5963 4.811557 CCATCGAACTTTTGATACTCCCTC 59.188 45.833 0.00 0.00 30.21 4.30
4276 5964 4.467198 TCGAACTTTTGATACTCCCTCC 57.533 45.455 0.00 0.00 0.00 4.30
4277 5965 3.119245 TCGAACTTTTGATACTCCCTCCG 60.119 47.826 0.00 0.00 0.00 4.63
4278 5966 3.368116 CGAACTTTTGATACTCCCTCCGT 60.368 47.826 0.00 0.00 0.00 4.69
4279 5967 4.576879 GAACTTTTGATACTCCCTCCGTT 58.423 43.478 0.00 0.00 0.00 4.44
4280 5968 4.203654 ACTTTTGATACTCCCTCCGTTC 57.796 45.455 0.00 0.00 0.00 3.95
4281 5969 3.055312 ACTTTTGATACTCCCTCCGTTCC 60.055 47.826 0.00 0.00 0.00 3.62
4282 5970 2.241281 TTGATACTCCCTCCGTTCCA 57.759 50.000 0.00 0.00 0.00 3.53
4283 5971 2.471815 TGATACTCCCTCCGTTCCAT 57.528 50.000 0.00 0.00 0.00 3.41
4284 5972 3.605726 TGATACTCCCTCCGTTCCATA 57.394 47.619 0.00 0.00 0.00 2.74
4285 5973 3.918566 TGATACTCCCTCCGTTCCATAA 58.081 45.455 0.00 0.00 0.00 1.90
4286 5974 4.489737 TGATACTCCCTCCGTTCCATAAT 58.510 43.478 0.00 0.00 0.00 1.28
4287 5975 4.283467 TGATACTCCCTCCGTTCCATAATG 59.717 45.833 0.00 0.00 0.00 1.90
4288 5976 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
4289 5977 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
4290 5978 3.641906 ACTCCCTCCGTTCCATAATGTAG 59.358 47.826 0.00 0.00 0.00 2.74
4291 5979 3.641906 CTCCCTCCGTTCCATAATGTAGT 59.358 47.826 0.00 0.00 0.00 2.73
4292 5980 3.386726 TCCCTCCGTTCCATAATGTAGTG 59.613 47.826 0.00 0.00 0.00 2.74
4293 5981 3.131396 CCTCCGTTCCATAATGTAGTGC 58.869 50.000 0.00 0.00 0.00 4.40
4294 5982 3.131396 CTCCGTTCCATAATGTAGTGCC 58.869 50.000 0.00 0.00 0.00 5.01
4295 5983 2.769663 TCCGTTCCATAATGTAGTGCCT 59.230 45.455 0.00 0.00 0.00 4.75
4296 5984 3.962063 TCCGTTCCATAATGTAGTGCCTA 59.038 43.478 0.00 0.00 0.00 3.93
4297 5985 4.591498 TCCGTTCCATAATGTAGTGCCTAT 59.409 41.667 0.00 0.00 0.00 2.57
4298 5986 5.776208 TCCGTTCCATAATGTAGTGCCTATA 59.224 40.000 0.00 0.00 0.00 1.31
4299 5987 6.071560 TCCGTTCCATAATGTAGTGCCTATAG 60.072 42.308 0.00 0.00 0.00 1.31
4300 5988 6.071560 CCGTTCCATAATGTAGTGCCTATAGA 60.072 42.308 0.00 0.00 0.00 1.98
4301 5989 7.363880 CCGTTCCATAATGTAGTGCCTATAGAT 60.364 40.741 0.00 0.00 0.00 1.98
4302 5990 8.035394 CGTTCCATAATGTAGTGCCTATAGATT 58.965 37.037 0.00 0.00 0.00 2.40
4303 5991 9.726438 GTTCCATAATGTAGTGCCTATAGATTT 57.274 33.333 0.00 0.00 0.00 2.17
4327 6015 6.704512 TTTGAGAAGTCAAACTTTGCAAAC 57.295 33.333 8.05 0.00 45.82 2.93
4328 6016 5.643379 TGAGAAGTCAAACTTTGCAAACT 57.357 34.783 8.05 0.00 38.80 2.66
4329 6017 6.024552 TGAGAAGTCAAACTTTGCAAACTT 57.975 33.333 8.05 9.72 38.80 2.66
4330 6018 6.454795 TGAGAAGTCAAACTTTGCAAACTTT 58.545 32.000 8.05 9.26 38.80 2.66
4331 6019 6.365789 TGAGAAGTCAAACTTTGCAAACTTTG 59.634 34.615 25.88 25.88 38.80 2.77
4332 6020 6.454795 AGAAGTCAAACTTTGCAAACTTTGA 58.545 32.000 28.34 28.34 38.80 2.69
4333 6021 6.366061 AGAAGTCAAACTTTGCAAACTTTGAC 59.634 34.615 37.83 37.83 43.81 3.18
4334 6022 4.929211 AGTCAAACTTTGCAAACTTTGACC 59.071 37.500 39.05 30.33 44.13 4.02
4335 6023 4.688413 GTCAAACTTTGCAAACTTTGACCA 59.312 37.500 36.59 21.78 41.10 4.02
4336 6024 5.178438 GTCAAACTTTGCAAACTTTGACCAA 59.822 36.000 36.59 21.55 41.10 3.67
4337 6025 5.407995 TCAAACTTTGCAAACTTTGACCAAG 59.592 36.000 28.34 12.42 38.64 3.61
4350 6038 7.696992 ACTTTGACCAAGTTTGTAGAGAAAA 57.303 32.000 0.00 0.00 43.89 2.29
4351 6039 8.117813 ACTTTGACCAAGTTTGTAGAGAAAAA 57.882 30.769 0.00 0.00 43.89 1.94
4352 6040 8.749354 ACTTTGACCAAGTTTGTAGAGAAAAAT 58.251 29.630 0.00 0.00 43.89 1.82
4386 6074 9.681062 TCTACAATAGCAAAAATATATAGGCCC 57.319 33.333 0.00 0.00 0.00 5.80
4387 6075 9.686683 CTACAATAGCAAAAATATATAGGCCCT 57.313 33.333 0.00 0.00 0.00 5.19
4388 6076 8.353423 ACAATAGCAAAAATATATAGGCCCTG 57.647 34.615 0.00 0.00 0.00 4.45
4389 6077 7.950124 ACAATAGCAAAAATATATAGGCCCTGT 59.050 33.333 0.00 0.00 0.00 4.00
4390 6078 8.806146 CAATAGCAAAAATATATAGGCCCTGTT 58.194 33.333 0.00 0.00 0.00 3.16
4391 6079 8.956446 ATAGCAAAAATATATAGGCCCTGTTT 57.044 30.769 0.00 0.00 0.00 2.83
4392 6080 7.054491 AGCAAAAATATATAGGCCCTGTTTG 57.946 36.000 0.00 0.61 0.00 2.93
4393 6081 6.041979 AGCAAAAATATATAGGCCCTGTTTGG 59.958 38.462 0.00 0.00 0.00 3.28
4394 6082 6.183360 GCAAAAATATATAGGCCCTGTTTGGT 60.183 38.462 0.00 0.00 0.00 3.67
4395 6083 7.634869 GCAAAAATATATAGGCCCTGTTTGGTT 60.635 37.037 0.00 0.00 0.00 3.67
4396 6084 7.597288 AAAATATATAGGCCCTGTTTGGTTC 57.403 36.000 0.00 0.00 0.00 3.62
4397 6085 5.922960 ATATATAGGCCCTGTTTGGTTCA 57.077 39.130 0.00 0.00 0.00 3.18
4398 6086 4.814224 ATATAGGCCCTGTTTGGTTCAT 57.186 40.909 0.00 0.00 0.00 2.57
4399 6087 5.922960 ATATAGGCCCTGTTTGGTTCATA 57.077 39.130 0.00 0.00 0.00 2.15
4400 6088 2.990740 AGGCCCTGTTTGGTTCATAA 57.009 45.000 0.00 0.00 0.00 1.90
4401 6089 2.807676 AGGCCCTGTTTGGTTCATAAG 58.192 47.619 0.00 0.00 0.00 1.73
4402 6090 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
4403 6091 2.492088 GGCCCTGTTTGGTTCATAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
4404 6092 2.492088 GCCCTGTTTGGTTCATAAGTCC 59.508 50.000 0.00 0.00 0.00 3.85
4405 6093 3.814316 GCCCTGTTTGGTTCATAAGTCCT 60.814 47.826 0.00 0.00 0.00 3.85
4406 6094 4.566907 GCCCTGTTTGGTTCATAAGTCCTA 60.567 45.833 0.00 0.00 0.00 2.94
4407 6095 5.186198 CCCTGTTTGGTTCATAAGTCCTAG 58.814 45.833 0.00 0.00 0.00 3.02
4408 6096 5.186198 CCTGTTTGGTTCATAAGTCCTAGG 58.814 45.833 0.82 0.82 0.00 3.02
4409 6097 5.045869 CCTGTTTGGTTCATAAGTCCTAGGA 60.046 44.000 7.62 7.62 0.00 2.94
4410 6098 5.801380 TGTTTGGTTCATAAGTCCTAGGAC 58.199 41.667 31.29 31.29 44.86 3.85
4438 6126 6.956102 TTTAGTCCCAACTTATAAGTCCCA 57.044 37.500 18.28 1.06 38.57 4.37
4439 6127 6.956102 TTAGTCCCAACTTATAAGTCCCAA 57.044 37.500 18.28 3.05 38.57 4.12
4440 6128 5.437191 AGTCCCAACTTATAAGTCCCAAG 57.563 43.478 18.28 6.66 38.57 3.61
4441 6129 4.850386 AGTCCCAACTTATAAGTCCCAAGT 59.150 41.667 18.28 5.74 38.57 3.16
4442 6130 5.045797 AGTCCCAACTTATAAGTCCCAAGTC 60.046 44.000 18.28 6.78 38.57 3.01
4443 6131 4.226620 TCCCAACTTATAAGTCCCAAGTCC 59.773 45.833 18.28 0.00 38.57 3.85
4444 6132 4.524053 CCAACTTATAAGTCCCAAGTCCC 58.476 47.826 18.28 0.00 38.57 4.46
4445 6133 4.227527 CCAACTTATAAGTCCCAAGTCCCT 59.772 45.833 18.28 0.00 38.57 4.20
4446 6134 5.427481 CCAACTTATAAGTCCCAAGTCCCTA 59.573 44.000 18.28 0.00 38.57 3.53
4447 6135 6.069847 CCAACTTATAAGTCCCAAGTCCCTAA 60.070 42.308 18.28 0.00 38.57 2.69
4448 6136 7.399634 CAACTTATAAGTCCCAAGTCCCTAAA 58.600 38.462 18.28 0.00 38.57 1.85
4449 6137 7.578458 ACTTATAAGTCCCAAGTCCCTAAAA 57.422 36.000 12.50 0.00 32.86 1.52
4450 6138 7.992295 ACTTATAAGTCCCAAGTCCCTAAAAA 58.008 34.615 12.50 0.00 32.86 1.94
4451 6139 8.107729 ACTTATAAGTCCCAAGTCCCTAAAAAG 58.892 37.037 12.50 0.00 32.86 2.27
4452 6140 4.808767 AAGTCCCAAGTCCCTAAAAAGT 57.191 40.909 0.00 0.00 0.00 2.66
4453 6141 4.368565 AGTCCCAAGTCCCTAAAAAGTC 57.631 45.455 0.00 0.00 0.00 3.01
4454 6142 3.074094 AGTCCCAAGTCCCTAAAAAGTCC 59.926 47.826 0.00 0.00 0.00 3.85
4455 6143 2.377531 TCCCAAGTCCCTAAAAAGTCCC 59.622 50.000 0.00 0.00 0.00 4.46
4456 6144 2.378886 CCCAAGTCCCTAAAAAGTCCCT 59.621 50.000 0.00 0.00 0.00 4.20
4457 6145 3.590182 CCCAAGTCCCTAAAAAGTCCCTA 59.410 47.826 0.00 0.00 0.00 3.53
4458 6146 4.567116 CCCAAGTCCCTAAAAAGTCCCTAC 60.567 50.000 0.00 0.00 0.00 3.18
4459 6147 4.567116 CCAAGTCCCTAAAAAGTCCCTACC 60.567 50.000 0.00 0.00 0.00 3.18
4460 6148 4.157668 AGTCCCTAAAAAGTCCCTACCT 57.842 45.455 0.00 0.00 0.00 3.08
4461 6149 3.844804 AGTCCCTAAAAAGTCCCTACCTG 59.155 47.826 0.00 0.00 0.00 4.00
4462 6150 3.586174 GTCCCTAAAAAGTCCCTACCTGT 59.414 47.826 0.00 0.00 0.00 4.00
4463 6151 4.042560 GTCCCTAAAAAGTCCCTACCTGTT 59.957 45.833 0.00 0.00 0.00 3.16
4464 6152 4.666431 TCCCTAAAAAGTCCCTACCTGTTT 59.334 41.667 0.00 0.00 0.00 2.83
4465 6153 4.765339 CCCTAAAAAGTCCCTACCTGTTTG 59.235 45.833 0.00 0.00 0.00 2.93
4466 6154 4.765339 CCTAAAAAGTCCCTACCTGTTTGG 59.235 45.833 0.00 0.00 42.93 3.28
4476 6164 3.036431 CCTGTTTGGTTCCTGGGAC 57.964 57.895 0.00 0.00 0.00 4.46
4477 6165 0.478507 CCTGTTTGGTTCCTGGGACT 59.521 55.000 4.84 0.00 0.00 3.85
4478 6166 1.133482 CCTGTTTGGTTCCTGGGACTT 60.133 52.381 4.84 0.00 0.00 3.01
4479 6167 2.107552 CCTGTTTGGTTCCTGGGACTTA 59.892 50.000 4.84 0.00 0.00 2.24
4480 6168 3.245264 CCTGTTTGGTTCCTGGGACTTAT 60.245 47.826 4.84 0.00 0.00 1.73
4481 6169 4.018779 CCTGTTTGGTTCCTGGGACTTATA 60.019 45.833 4.84 0.00 0.00 0.98
4482 6170 5.515886 CCTGTTTGGTTCCTGGGACTTATAA 60.516 44.000 4.84 0.00 0.00 0.98
4483 6171 5.566469 TGTTTGGTTCCTGGGACTTATAAG 58.434 41.667 11.05 11.05 0.00 1.73
4484 6172 5.073965 TGTTTGGTTCCTGGGACTTATAAGT 59.926 40.000 18.05 18.05 43.16 2.24
4507 6195 9.448587 AAGTCCCTATAAGACCATATTACAACT 57.551 33.333 0.09 0.00 34.67 3.16
4517 6205 9.448587 AAGACCATATTACAACTATAAGTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
4528 6216 9.577222 ACAACTATAAGTCCCTATAAGACTCTC 57.423 37.037 5.74 0.00 43.77 3.20
4529 6217 9.016438 CAACTATAAGTCCCTATAAGACTCTCC 57.984 40.741 5.74 0.00 43.77 3.71
4530 6218 8.528543 ACTATAAGTCCCTATAAGACTCTCCT 57.471 38.462 5.74 0.00 43.77 3.69
4531 6219 8.962205 ACTATAAGTCCCTATAAGACTCTCCTT 58.038 37.037 5.74 0.00 43.77 3.36
4532 6220 9.238368 CTATAAGTCCCTATAAGACTCTCCTTG 57.762 40.741 5.74 0.00 43.77 3.61
4533 6221 5.735733 AGTCCCTATAAGACTCTCCTTGA 57.264 43.478 0.24 0.00 40.61 3.02
4534 6222 5.701224 AGTCCCTATAAGACTCTCCTTGAG 58.299 45.833 0.24 0.00 40.61 3.02
4535 6223 5.433712 AGTCCCTATAAGACTCTCCTTGAGA 59.566 44.000 0.00 0.00 45.39 3.27
4551 6239 9.261035 TCTCCTTGAGAGTCTTATTTCATAAGT 57.739 33.333 0.00 0.00 43.71 2.24
4552 6240 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
4553 6241 8.478877 TCCTTGAGAGTCTTATTTCATAAGTCC 58.521 37.037 0.00 0.00 42.21 3.85
4554 6242 7.713073 CCTTGAGAGTCTTATTTCATAAGTCCC 59.287 40.741 0.00 0.00 42.21 4.46
4555 6243 7.733773 TGAGAGTCTTATTTCATAAGTCCCA 57.266 36.000 0.00 0.00 42.21 4.37
4556 6244 8.146053 TGAGAGTCTTATTTCATAAGTCCCAA 57.854 34.615 0.00 0.00 42.21 4.12
4557 6245 8.602424 TGAGAGTCTTATTTCATAAGTCCCAAA 58.398 33.333 0.00 0.00 42.21 3.28
4558 6246 9.620259 GAGAGTCTTATTTCATAAGTCCCAAAT 57.380 33.333 0.00 0.00 42.21 2.32
4559 6247 9.401058 AGAGTCTTATTTCATAAGTCCCAAATG 57.599 33.333 3.93 0.00 42.21 2.32
4560 6248 8.000780 AGTCTTATTTCATAAGTCCCAAATGC 57.999 34.615 3.93 0.00 42.21 3.56
4561 6249 7.068716 AGTCTTATTTCATAAGTCCCAAATGCC 59.931 37.037 3.93 0.00 42.21 4.40
4562 6250 6.323739 TCTTATTTCATAAGTCCCAAATGCCC 59.676 38.462 3.93 0.00 42.21 5.36
4563 6251 3.464720 TTCATAAGTCCCAAATGCCCA 57.535 42.857 0.00 0.00 0.00 5.36
4564 6252 2.733956 TCATAAGTCCCAAATGCCCAC 58.266 47.619 0.00 0.00 0.00 4.61
4565 6253 2.311542 TCATAAGTCCCAAATGCCCACT 59.688 45.455 0.00 0.00 0.00 4.00
4566 6254 2.990740 TAAGTCCCAAATGCCCACTT 57.009 45.000 0.00 0.00 0.00 3.16
4567 6255 2.101640 AAGTCCCAAATGCCCACTTT 57.898 45.000 0.00 0.00 0.00 2.66
4568 6256 2.990740 AGTCCCAAATGCCCACTTTA 57.009 45.000 0.00 0.00 0.00 1.85
4569 6257 3.252554 AGTCCCAAATGCCCACTTTAA 57.747 42.857 0.00 0.00 0.00 1.52
4570 6258 3.582164 AGTCCCAAATGCCCACTTTAAA 58.418 40.909 0.00 0.00 0.00 1.52
4571 6259 4.167319 AGTCCCAAATGCCCACTTTAAAT 58.833 39.130 0.00 0.00 0.00 1.40
4572 6260 4.222810 AGTCCCAAATGCCCACTTTAAATC 59.777 41.667 0.00 0.00 0.00 2.17
4573 6261 3.517500 TCCCAAATGCCCACTTTAAATCC 59.482 43.478 0.00 0.00 0.00 3.01
4574 6262 3.370421 CCCAAATGCCCACTTTAAATCCC 60.370 47.826 0.00 0.00 0.00 3.85
4575 6263 3.519107 CCAAATGCCCACTTTAAATCCCT 59.481 43.478 0.00 0.00 0.00 4.20
4576 6264 4.714308 CCAAATGCCCACTTTAAATCCCTA 59.286 41.667 0.00 0.00 0.00 3.53
4577 6265 5.366477 CCAAATGCCCACTTTAAATCCCTAT 59.634 40.000 0.00 0.00 0.00 2.57
4578 6266 6.553100 CCAAATGCCCACTTTAAATCCCTATA 59.447 38.462 0.00 0.00 0.00 1.31
4579 6267 7.070571 CCAAATGCCCACTTTAAATCCCTATAA 59.929 37.037 0.00 0.00 0.00 0.98
4580 6268 7.839680 AATGCCCACTTTAAATCCCTATAAG 57.160 36.000 0.00 0.00 0.00 1.73
4581 6269 6.335781 TGCCCACTTTAAATCCCTATAAGT 57.664 37.500 0.00 0.00 0.00 2.24
4582 6270 6.362248 TGCCCACTTTAAATCCCTATAAGTC 58.638 40.000 0.00 0.00 0.00 3.01
4583 6271 5.768662 GCCCACTTTAAATCCCTATAAGTCC 59.231 44.000 0.00 0.00 0.00 3.85
4584 6272 6.304624 CCCACTTTAAATCCCTATAAGTCCC 58.695 44.000 0.00 0.00 0.00 4.46
4585 6273 6.102762 CCCACTTTAAATCCCTATAAGTCCCT 59.897 42.308 0.00 0.00 0.00 4.20
4586 6274 7.225011 CCACTTTAAATCCCTATAAGTCCCTC 58.775 42.308 0.00 0.00 0.00 4.30
4587 6275 7.147373 CCACTTTAAATCCCTATAAGTCCCTCA 60.147 40.741 0.00 0.00 0.00 3.86
4588 6276 8.440771 CACTTTAAATCCCTATAAGTCCCTCAT 58.559 37.037 0.00 0.00 0.00 2.90
4589 6277 8.440771 ACTTTAAATCCCTATAAGTCCCTCATG 58.559 37.037 0.00 0.00 0.00 3.07
4590 6278 7.947782 TTAAATCCCTATAAGTCCCTCATGT 57.052 36.000 0.00 0.00 0.00 3.21
4591 6279 6.848562 AAATCCCTATAAGTCCCTCATGTT 57.151 37.500 0.00 0.00 0.00 2.71
4592 6280 6.848562 AATCCCTATAAGTCCCTCATGTTT 57.151 37.500 0.00 0.00 0.00 2.83
4593 6281 5.630415 TCCCTATAAGTCCCTCATGTTTG 57.370 43.478 0.00 0.00 0.00 2.93
4594 6282 4.412199 TCCCTATAAGTCCCTCATGTTTGG 59.588 45.833 0.00 0.00 0.00 3.28
4595 6283 4.166144 CCCTATAAGTCCCTCATGTTTGGT 59.834 45.833 0.00 0.00 0.00 3.67
4596 6284 5.340027 CCCTATAAGTCCCTCATGTTTGGTT 60.340 44.000 0.00 0.00 0.00 3.67
4597 6285 6.187682 CCTATAAGTCCCTCATGTTTGGTTT 58.812 40.000 0.00 0.00 0.00 3.27
4598 6286 7.343357 CCTATAAGTCCCTCATGTTTGGTTTA 58.657 38.462 0.00 0.00 0.00 2.01
4599 6287 7.499232 CCTATAAGTCCCTCATGTTTGGTTTAG 59.501 40.741 0.00 0.00 0.00 1.85
4600 6288 4.993705 AGTCCCTCATGTTTGGTTTAGA 57.006 40.909 0.00 0.00 0.00 2.10
4601 6289 5.520748 AGTCCCTCATGTTTGGTTTAGAT 57.479 39.130 0.00 0.00 0.00 1.98
4602 6290 5.256474 AGTCCCTCATGTTTGGTTTAGATG 58.744 41.667 0.00 0.00 0.00 2.90
4603 6291 4.399303 GTCCCTCATGTTTGGTTTAGATGG 59.601 45.833 0.00 0.00 0.00 3.51
4604 6292 3.701040 CCCTCATGTTTGGTTTAGATGGG 59.299 47.826 0.00 0.00 0.00 4.00
4605 6293 4.569653 CCCTCATGTTTGGTTTAGATGGGA 60.570 45.833 0.00 0.00 31.98 4.37
4606 6294 4.399303 CCTCATGTTTGGTTTAGATGGGAC 59.601 45.833 0.00 0.00 0.00 4.46
4607 6295 5.255397 TCATGTTTGGTTTAGATGGGACT 57.745 39.130 0.00 0.00 0.00 3.85
4608 6296 5.640147 TCATGTTTGGTTTAGATGGGACTT 58.360 37.500 0.00 0.00 0.00 3.01
4609 6297 6.785076 TCATGTTTGGTTTAGATGGGACTTA 58.215 36.000 0.00 0.00 0.00 2.24
4610 6298 7.410174 TCATGTTTGGTTTAGATGGGACTTAT 58.590 34.615 0.00 0.00 0.00 1.73
4611 6299 8.553153 TCATGTTTGGTTTAGATGGGACTTATA 58.447 33.333 0.00 0.00 0.00 0.98
4612 6300 8.840321 CATGTTTGGTTTAGATGGGACTTATAG 58.160 37.037 0.00 0.00 0.00 1.31
4613 6301 7.343357 TGTTTGGTTTAGATGGGACTTATAGG 58.657 38.462 0.00 0.00 0.00 2.57
4614 6302 6.509523 TTGGTTTAGATGGGACTTATAGGG 57.490 41.667 0.00 0.00 0.00 3.53
4615 6303 5.795079 TGGTTTAGATGGGACTTATAGGGA 58.205 41.667 0.00 0.00 0.00 4.20
4616 6304 5.605488 TGGTTTAGATGGGACTTATAGGGAC 59.395 44.000 0.00 0.00 0.00 4.46
4617 6305 5.845065 GGTTTAGATGGGACTTATAGGGACT 59.155 44.000 0.00 0.00 46.37 3.85
4618 6306 6.329460 GGTTTAGATGGGACTTATAGGGACTT 59.671 42.308 0.00 0.00 41.75 3.01
4619 6307 7.147355 GGTTTAGATGGGACTTATAGGGACTTT 60.147 40.741 0.00 0.00 41.75 2.66
4620 6308 8.272889 GTTTAGATGGGACTTATAGGGACTTTT 58.727 37.037 0.00 0.00 41.75 2.27
4621 6309 6.910259 AGATGGGACTTATAGGGACTTTTT 57.090 37.500 0.00 0.00 41.75 1.94
4644 6332 8.640063 TTTTAAGTCCCTAAACCAATAAGTCC 57.360 34.615 0.00 0.00 0.00 3.85
4645 6333 4.857130 AGTCCCTAAACCAATAAGTCCC 57.143 45.455 0.00 0.00 0.00 4.46
4646 6334 4.445564 AGTCCCTAAACCAATAAGTCCCT 58.554 43.478 0.00 0.00 0.00 4.20
4647 6335 4.227527 AGTCCCTAAACCAATAAGTCCCTG 59.772 45.833 0.00 0.00 0.00 4.45
4648 6336 3.526019 TCCCTAAACCAATAAGTCCCTGG 59.474 47.826 0.00 0.00 36.24 4.45
4649 6337 3.526019 CCCTAAACCAATAAGTCCCTGGA 59.474 47.826 0.00 0.00 34.16 3.86
4650 6338 4.017867 CCCTAAACCAATAAGTCCCTGGAA 60.018 45.833 0.00 0.00 34.16 3.53
4651 6339 5.517655 CCCTAAACCAATAAGTCCCTGGAAA 60.518 44.000 0.00 0.00 34.16 3.13
4652 6340 5.417894 CCTAAACCAATAAGTCCCTGGAAAC 59.582 44.000 0.00 0.00 34.16 2.78
4653 6341 4.463050 AACCAATAAGTCCCTGGAAACA 57.537 40.909 0.00 0.00 39.59 2.83
4654 6342 4.463050 ACCAATAAGTCCCTGGAAACAA 57.537 40.909 0.00 0.00 42.06 2.83
4655 6343 4.810345 ACCAATAAGTCCCTGGAAACAAA 58.190 39.130 0.00 0.00 42.06 2.83
4656 6344 4.587262 ACCAATAAGTCCCTGGAAACAAAC 59.413 41.667 0.00 0.00 42.06 2.93
4657 6345 4.586841 CCAATAAGTCCCTGGAAACAAACA 59.413 41.667 0.00 0.00 42.06 2.83
4658 6346 5.508994 CCAATAAGTCCCTGGAAACAAACAC 60.509 44.000 0.00 0.00 42.06 3.32
4659 6347 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
4660 6348 1.037493 GTCCCTGGAAACAAACACCC 58.963 55.000 0.00 0.00 42.06 4.61
4661 6349 0.930726 TCCCTGGAAACAAACACCCT 59.069 50.000 0.00 0.00 42.06 4.34
4662 6350 1.133606 TCCCTGGAAACAAACACCCTC 60.134 52.381 0.00 0.00 42.06 4.30
4663 6351 1.410932 CCCTGGAAACAAACACCCTCA 60.411 52.381 0.00 0.00 42.06 3.86
4664 6352 2.597455 CCTGGAAACAAACACCCTCAT 58.403 47.619 0.00 0.00 42.06 2.90
4665 6353 3.499563 CCCTGGAAACAAACACCCTCATA 60.500 47.826 0.00 0.00 42.06 2.15
4666 6354 4.148838 CCTGGAAACAAACACCCTCATAA 58.851 43.478 0.00 0.00 42.06 1.90
4667 6355 4.772100 CCTGGAAACAAACACCCTCATAAT 59.228 41.667 0.00 0.00 42.06 1.28
4668 6356 5.336690 CCTGGAAACAAACACCCTCATAATG 60.337 44.000 0.00 0.00 42.06 1.90
4669 6357 5.144100 TGGAAACAAACACCCTCATAATGT 58.856 37.500 0.00 0.00 37.44 2.71
4670 6358 5.010516 TGGAAACAAACACCCTCATAATGTG 59.989 40.000 0.00 0.00 37.44 3.21
4671 6359 5.242838 GGAAACAAACACCCTCATAATGTGA 59.757 40.000 0.00 0.00 34.18 3.58
4672 6360 6.239176 GGAAACAAACACCCTCATAATGTGAA 60.239 38.462 0.00 0.00 36.14 3.18
4673 6361 6.723298 AACAAACACCCTCATAATGTGAAA 57.277 33.333 0.00 0.00 36.14 2.69
4674 6362 6.084326 ACAAACACCCTCATAATGTGAAAC 57.916 37.500 0.00 0.00 36.14 2.78
4675 6363 5.833131 ACAAACACCCTCATAATGTGAAACT 59.167 36.000 0.00 0.00 38.04 2.66
4676 6364 7.001674 ACAAACACCCTCATAATGTGAAACTA 58.998 34.615 0.00 0.00 38.04 2.24
4677 6365 7.040686 ACAAACACCCTCATAATGTGAAACTAC 60.041 37.037 0.00 0.00 38.04 2.73
4678 6366 6.121776 ACACCCTCATAATGTGAAACTACA 57.878 37.500 0.00 0.00 38.04 2.74
4679 6367 6.721318 ACACCCTCATAATGTGAAACTACAT 58.279 36.000 0.00 0.00 42.82 2.29
4680 6368 6.823689 ACACCCTCATAATGTGAAACTACATC 59.176 38.462 0.00 0.00 40.24 3.06
4681 6369 7.050377 CACCCTCATAATGTGAAACTACATCT 58.950 38.462 0.00 0.00 40.24 2.90
4682 6370 7.554118 CACCCTCATAATGTGAAACTACATCTT 59.446 37.037 0.00 0.00 40.24 2.40
4683 6371 8.768397 ACCCTCATAATGTGAAACTACATCTTA 58.232 33.333 0.00 0.00 40.24 2.10
4684 6372 9.046296 CCCTCATAATGTGAAACTACATCTTAC 57.954 37.037 0.00 0.00 40.24 2.34
4685 6373 9.599866 CCTCATAATGTGAAACTACATCTTACA 57.400 33.333 0.00 0.00 40.24 2.41
4693 6381 9.725019 TGTGAAACTACATCTTACAATGAATCT 57.275 29.630 0.00 0.00 38.04 2.40
4748 6436 5.930837 AAAATTCTCCACAAACTTGGTCA 57.069 34.783 0.00 0.00 37.93 4.02
4749 6437 5.930837 AAATTCTCCACAAACTTGGTCAA 57.069 34.783 0.00 0.00 37.93 3.18
4750 6438 5.930837 AATTCTCCACAAACTTGGTCAAA 57.069 34.783 0.00 0.00 37.93 2.69
4751 6439 4.981806 TTCTCCACAAACTTGGTCAAAG 57.018 40.909 0.00 0.00 42.07 2.77
4764 6452 6.817270 CTTGGTCAAAGTTTGTGAGATTTG 57.183 37.500 15.08 0.00 34.66 2.32
4765 6453 6.522625 TTGGTCAAAGTTTGTGAGATTTGA 57.477 33.333 15.08 0.00 38.85 2.69
4771 6459 8.687824 TCAAAGTTTGTGAGATTTGACTTTTC 57.312 30.769 15.08 0.00 36.89 2.29
4772 6460 8.303156 TCAAAGTTTGTGAGATTTGACTTTTCA 58.697 29.630 15.08 0.00 36.89 2.69
4773 6461 8.924691 CAAAGTTTGTGAGATTTGACTTTTCAA 58.075 29.630 7.48 0.00 40.14 2.69
4803 6491 3.194005 AGGCACTACATTATGGAACGG 57.806 47.619 0.00 0.00 36.02 4.44
4804 6492 2.769663 AGGCACTACATTATGGAACGGA 59.230 45.455 0.00 0.00 36.02 4.69
4805 6493 3.131396 GGCACTACATTATGGAACGGAG 58.869 50.000 0.00 0.00 0.00 4.63
4806 6494 3.131396 GCACTACATTATGGAACGGAGG 58.869 50.000 0.00 0.00 0.00 4.30
4807 6495 3.728845 CACTACATTATGGAACGGAGGG 58.271 50.000 0.00 0.00 0.00 4.30
4808 6496 3.386726 CACTACATTATGGAACGGAGGGA 59.613 47.826 0.00 0.00 0.00 4.20
4809 6497 3.641906 ACTACATTATGGAACGGAGGGAG 59.358 47.826 0.00 0.00 0.00 4.30
4854 6543 1.480545 GTAGGATTTGCGGGGCATTTT 59.519 47.619 0.00 0.00 38.76 1.82
4865 6554 1.335872 GGGGCATTTTGTGTCTTGTCG 60.336 52.381 0.00 0.00 31.47 4.35
4873 6566 4.349663 TTTGTGTCTTGTCGGTTCTTTG 57.650 40.909 0.00 0.00 0.00 2.77
4962 6657 2.028130 CTTGTTAAGGTTGTGTGCCCA 58.972 47.619 0.00 0.00 0.00 5.36
4993 6688 9.110502 AGCGATGTATAAGATCGTCAGATATTA 57.889 33.333 13.95 0.00 43.74 0.98
5194 6905 8.732746 TCCTTTCCAACTATATTAAGCAGTTC 57.267 34.615 0.00 0.00 30.20 3.01
5246 6957 2.575279 AGTGATGCCTTCAGTTGAGGAT 59.425 45.455 0.00 0.00 34.14 3.24
5282 6993 5.879237 TCATCGATTCAGGTTTGTTATTGC 58.121 37.500 0.00 0.00 0.00 3.56
5336 7047 9.135189 CCATTTATAAGGATGATGAGTTTTCCA 57.865 33.333 0.00 0.00 0.00 3.53
5384 7095 6.427150 AGTGAACTTACATTGTTTACTTGCG 58.573 36.000 0.00 0.00 39.94 4.85
5454 7165 0.320683 TCACACAGCATTGGTCGGAG 60.321 55.000 0.00 0.00 0.00 4.63
5521 7232 6.213195 TGCAATTGAGATTGTTCCCCTTAATT 59.787 34.615 10.34 0.00 43.67 1.40
5532 7243 5.011635 TGTTCCCCTTAATTCTTCAAAAGGC 59.988 40.000 0.00 0.00 37.71 4.35
5543 7254 4.850680 TCTTCAAAAGGCGGTGGTATAAT 58.149 39.130 0.00 0.00 0.00 1.28
5629 7341 5.627780 GCATTTTTACTGTTCCTTTGTACCG 59.372 40.000 0.00 0.00 0.00 4.02
5651 7364 8.574196 ACCGTATTTCATCTTCTTTGTTTTTG 57.426 30.769 0.00 0.00 0.00 2.44
5844 7568 4.067192 CAAGTGATCCAACTGACATGACA 58.933 43.478 0.00 0.00 0.00 3.58
5932 7665 8.106247 TGGAATGTACAAAAGACAAGGTATTC 57.894 34.615 0.00 0.00 0.00 1.75
5934 7667 8.793592 GGAATGTACAAAAGACAAGGTATTCTT 58.206 33.333 0.00 0.00 35.79 2.52
5996 7729 2.209690 TTAGGGCTGGCTACCAAAAC 57.790 50.000 0.00 0.00 30.80 2.43
6039 7774 2.593026 GAAAAGGGATGTGGGTGTTGA 58.407 47.619 0.00 0.00 0.00 3.18
6181 7921 5.261216 TGGAGGTGAACAGAAAAGAAAACT 58.739 37.500 0.00 0.00 0.00 2.66
6269 8013 1.915141 ATTCTTGTGGCCCTTGACTG 58.085 50.000 0.00 0.00 0.00 3.51
6271 8015 1.228367 CTTGTGGCCCTTGACTGCT 60.228 57.895 0.00 0.00 0.00 4.24
6274 8018 0.476338 TGTGGCCCTTGACTGCTTTA 59.524 50.000 0.00 0.00 0.00 1.85
6313 8058 4.330250 CCCTTGACTCTGATGAACATGTT 58.670 43.478 11.78 11.78 0.00 2.71
6315 8060 5.352569 CCCTTGACTCTGATGAACATGTTAC 59.647 44.000 11.95 6.98 0.00 2.50
6316 8061 6.169094 CCTTGACTCTGATGAACATGTTACT 58.831 40.000 11.95 1.14 0.00 2.24
6405 8150 9.689501 TTCCTATCGTTCCTTAATAAATGGTTT 57.310 29.630 0.00 0.00 0.00 3.27
6419 8164 3.895704 ATGGTTTCCCTAACTTGTGGT 57.104 42.857 0.00 0.00 36.93 4.16
6422 8167 3.293337 GGTTTCCCTAACTTGTGGTGTT 58.707 45.455 0.00 0.00 36.93 3.32
6423 8168 3.067601 GGTTTCCCTAACTTGTGGTGTTG 59.932 47.826 0.00 0.00 36.93 3.33
6424 8169 3.655615 TTCCCTAACTTGTGGTGTTGT 57.344 42.857 0.00 0.00 0.00 3.32
6425 8170 2.925724 TCCCTAACTTGTGGTGTTGTG 58.074 47.619 0.00 0.00 0.00 3.33
6426 8171 2.240160 TCCCTAACTTGTGGTGTTGTGT 59.760 45.455 0.00 0.00 0.00 3.72
6441 8186 5.526111 GGTGTTGTGTGTGTGTATAAGAAGT 59.474 40.000 0.00 0.00 0.00 3.01
6513 8265 9.613428 TGTCTATTGAGTTTTTCCGATTATGAT 57.387 29.630 0.00 0.00 0.00 2.45
6521 8273 6.607198 AGTTTTTCCGATTATGATTGGACCAT 59.393 34.615 5.94 0.00 44.06 3.55
6522 8274 6.633500 TTTTCCGATTATGATTGGACCATC 57.367 37.500 5.94 0.00 44.06 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.723299 GTATTCAATGCTATAAACGTCGAATAC 57.277 33.333 0.00 0.00 36.94 1.89
2 3 9.687210 AGTATTCAATGCTATAAACGTCGAATA 57.313 29.630 0.00 0.00 0.00 1.75
3 4 8.589335 AGTATTCAATGCTATAAACGTCGAAT 57.411 30.769 0.00 0.00 0.00 3.34
4 5 7.997107 AGTATTCAATGCTATAAACGTCGAA 57.003 32.000 0.00 0.00 0.00 3.71
5 6 7.997107 AAGTATTCAATGCTATAAACGTCGA 57.003 32.000 0.00 0.00 0.00 4.20
6 7 8.114290 ACAAAGTATTCAATGCTATAAACGTCG 58.886 33.333 0.00 0.00 0.00 5.12
7 8 9.422196 GACAAAGTATTCAATGCTATAAACGTC 57.578 33.333 0.00 0.00 0.00 4.34
8 9 8.395633 GGACAAAGTATTCAATGCTATAAACGT 58.604 33.333 0.00 0.00 0.00 3.99
9 10 7.855904 GGGACAAAGTATTCAATGCTATAAACG 59.144 37.037 0.00 0.00 0.00 3.60
10 11 8.903820 AGGGACAAAGTATTCAATGCTATAAAC 58.096 33.333 0.00 0.00 0.00 2.01
11 12 9.474313 AAGGGACAAAGTATTCAATGCTATAAA 57.526 29.630 0.00 0.00 0.00 1.40
14 15 9.071276 CATAAGGGACAAAGTATTCAATGCTAT 57.929 33.333 0.00 0.00 0.00 2.97
15 16 7.502226 CCATAAGGGACAAAGTATTCAATGCTA 59.498 37.037 0.00 0.00 40.01 3.49
16 17 6.322201 CCATAAGGGACAAAGTATTCAATGCT 59.678 38.462 0.00 0.00 40.01 3.79
17 18 6.507023 CCATAAGGGACAAAGTATTCAATGC 58.493 40.000 0.00 0.00 40.01 3.56
18 19 6.507023 GCCATAAGGGACAAAGTATTCAATG 58.493 40.000 0.00 0.00 40.01 2.82
19 20 5.299279 CGCCATAAGGGACAAAGTATTCAAT 59.701 40.000 0.00 0.00 40.01 2.57
20 21 4.638421 CGCCATAAGGGACAAAGTATTCAA 59.362 41.667 0.00 0.00 40.01 2.69
21 22 4.196193 CGCCATAAGGGACAAAGTATTCA 58.804 43.478 0.00 0.00 40.01 2.57
22 23 3.003378 GCGCCATAAGGGACAAAGTATTC 59.997 47.826 0.00 0.00 40.01 1.75
86 87 6.433093 GGGTTAGACCATAAAAGACACATGTT 59.567 38.462 0.00 0.00 41.02 2.71
137 139 5.234752 GCGTGATCCCCAAAGTTTATTTTT 58.765 37.500 0.00 0.00 0.00 1.94
168 171 3.936772 TTCGCCCCACATTGCCTCC 62.937 63.158 0.00 0.00 0.00 4.30
201 204 5.280164 CAAAAACAAAATGGCCCAATTGTC 58.720 37.500 15.95 0.00 35.09 3.18
217 220 6.462347 GCACCTAGAATCTTTTCCCAAAAACA 60.462 38.462 0.00 0.00 31.23 2.83
227 230 7.327214 CAGACTAGAAGCACCTAGAATCTTTT 58.673 38.462 16.26 0.00 38.68 2.27
228 231 6.127196 CCAGACTAGAAGCACCTAGAATCTTT 60.127 42.308 16.26 0.00 38.68 2.52
235 238 2.383855 AGCCAGACTAGAAGCACCTAG 58.616 52.381 0.00 9.89 41.36 3.02
239 242 3.669536 AGAAAAGCCAGACTAGAAGCAC 58.330 45.455 0.00 0.00 0.00 4.40
328 335 8.377034 TCATGGAAATGAAAATGGTTCAAGAAT 58.623 29.630 0.00 0.00 31.55 2.40
331 338 7.441760 TGTTCATGGAAATGAAAATGGTTCAAG 59.558 33.333 2.86 0.00 41.61 3.02
520 528 9.755804 AAAGTTCCTGAATTTGAGAGAATTTTC 57.244 29.630 0.00 0.00 29.75 2.29
525 533 8.292444 TGAAAAAGTTCCTGAATTTGAGAGAA 57.708 30.769 0.00 0.00 32.28 2.87
599 608 7.965655 TGATAACGAATTTGAACGTGCATTTAT 59.034 29.630 0.00 0.00 42.43 1.40
692 701 5.163652 GGTGATTTCTAAGAATTGTTCGGGG 60.164 44.000 0.00 0.00 34.02 5.73
807 816 1.448540 CCAGTTCGCTTGATCGGCT 60.449 57.895 8.48 0.00 0.00 5.52
808 817 3.093278 CCAGTTCGCTTGATCGGC 58.907 61.111 1.03 1.03 0.00 5.54
810 819 1.746727 CTCGCCAGTTCGCTTGATCG 61.747 60.000 0.00 0.00 0.00 3.69
812 821 2.103042 GCTCGCCAGTTCGCTTGAT 61.103 57.895 0.00 0.00 0.00 2.57
813 822 1.873270 TAGCTCGCCAGTTCGCTTGA 61.873 55.000 0.00 0.00 34.14 3.02
814 823 1.416813 CTAGCTCGCCAGTTCGCTTG 61.417 60.000 0.00 0.00 34.14 4.01
818 829 2.951745 CGCTAGCTCGCCAGTTCG 60.952 66.667 13.93 0.00 0.00 3.95
991 1013 2.630317 GCGCGCCATTGATGAGAG 59.370 61.111 23.24 0.00 0.00 3.20
992 1014 2.896854 GGCGCGCCATTGATGAGA 60.897 61.111 43.55 0.00 35.81 3.27
1089 1111 3.997064 CTGCGAGTGAAGCGGGAGG 62.997 68.421 0.00 0.00 37.34 4.30
1120 1142 3.237741 GGGATGAGGAGGCGGAGG 61.238 72.222 0.00 0.00 0.00 4.30
1121 1143 3.237741 GGGGATGAGGAGGCGGAG 61.238 72.222 0.00 0.00 0.00 4.63
1122 1144 4.088351 TGGGGATGAGGAGGCGGA 62.088 66.667 0.00 0.00 0.00 5.54
1226 1248 2.920645 CGCCTCGGATACATCGGCT 61.921 63.158 0.00 0.00 39.76 5.52
1351 1373 5.243730 TCAACAAGTCCAGGGATTGAAAATC 59.756 40.000 10.57 0.00 0.00 2.17
1358 1380 4.089361 GGAATTCAACAAGTCCAGGGATT 58.911 43.478 7.93 0.00 44.81 3.01
1359 1381 3.701664 GGAATTCAACAAGTCCAGGGAT 58.298 45.455 7.93 0.00 44.81 3.85
1389 1411 4.591202 CGAAGCAATTCGCAATTACAGAT 58.409 39.130 0.00 0.00 46.13 2.90
1692 1715 5.095691 ACAAGCAAACTAGTTCAACATCG 57.904 39.130 8.95 0.00 0.00 3.84
1709 1735 7.834068 TCTGATAGAAACATCTGTAACAAGC 57.166 36.000 0.00 0.00 0.00 4.01
1710 1736 9.814899 AGATCTGATAGAAACATCTGTAACAAG 57.185 33.333 0.00 0.00 0.00 3.16
1886 1922 1.338973 AGCAGAACAAATGTGGTGCTG 59.661 47.619 17.48 10.23 42.70 4.41
1922 1958 3.886123 ACACAACTACAAACAGAAGCCT 58.114 40.909 0.00 0.00 0.00 4.58
1923 1959 4.213482 CCTACACAACTACAAACAGAAGCC 59.787 45.833 0.00 0.00 0.00 4.35
2045 2083 4.843220 ATCGATCCAATTTCCTTCATGC 57.157 40.909 0.00 0.00 0.00 4.06
2113 2152 5.933617 AGCACATCTCCATCTTGCTATTAA 58.066 37.500 0.00 0.00 41.72 1.40
2270 2321 2.042464 TGTTGCCTACCATTTGCCAAA 58.958 42.857 0.00 0.00 0.00 3.28
2423 2476 9.912634 CTTTCAAGCATAGGACTAATTCAAAAA 57.087 29.630 0.00 0.00 0.00 1.94
2436 2489 7.951530 ACAAATTTCAACTTTCAAGCATAGG 57.048 32.000 0.00 0.00 0.00 2.57
2540 2593 8.468720 GTTCTCTTCATAAGAACCAGAAGTAC 57.531 38.462 4.97 0.00 44.41 2.73
2578 2634 5.068987 AGCAAAGCTATTCCAACACTGAAAA 59.931 36.000 0.00 0.00 36.99 2.29
2579 2635 4.584325 AGCAAAGCTATTCCAACACTGAAA 59.416 37.500 0.00 0.00 36.99 2.69
2608 2667 4.901197 TGGTTAACACAGAATAGGCTCA 57.099 40.909 8.10 0.00 0.00 4.26
2869 2936 3.228188 AGAAGAAACAGATGGCAACCA 57.772 42.857 0.00 0.00 38.19 3.67
2890 2957 5.888982 AAAAGTTCAGAGGTTCTCCAGTA 57.111 39.130 0.00 0.00 35.89 2.74
2898 2965 9.892130 CCTCTACATATTAAAAGTTCAGAGGTT 57.108 33.333 0.00 0.00 41.05 3.50
3016 3089 9.448438 TTGCATAAACAGTATACTTCTTGATGT 57.552 29.630 1.56 0.00 0.00 3.06
3041 3114 4.820173 AGCCTTAACGCAAAGAAGTTACTT 59.180 37.500 0.00 0.00 33.18 2.24
3042 3115 4.386711 AGCCTTAACGCAAAGAAGTTACT 58.613 39.130 0.00 0.00 33.18 2.24
3043 3116 4.744136 AGCCTTAACGCAAAGAAGTTAC 57.256 40.909 0.00 0.00 33.18 2.50
3044 3117 5.544650 ACTAGCCTTAACGCAAAGAAGTTA 58.455 37.500 0.00 0.00 0.00 2.24
3045 3118 4.386711 ACTAGCCTTAACGCAAAGAAGTT 58.613 39.130 0.00 0.00 0.00 2.66
3046 3119 4.004196 ACTAGCCTTAACGCAAAGAAGT 57.996 40.909 0.00 0.00 0.00 3.01
3047 3120 4.691216 AGAACTAGCCTTAACGCAAAGAAG 59.309 41.667 0.00 0.00 0.00 2.85
3048 3121 4.638304 AGAACTAGCCTTAACGCAAAGAA 58.362 39.130 0.00 0.00 0.00 2.52
3049 3122 4.267349 AGAACTAGCCTTAACGCAAAGA 57.733 40.909 0.00 0.00 0.00 2.52
3050 3123 5.163884 GGTAAGAACTAGCCTTAACGCAAAG 60.164 44.000 6.73 0.00 0.00 2.77
3051 3124 4.692155 GGTAAGAACTAGCCTTAACGCAAA 59.308 41.667 6.73 0.00 0.00 3.68
3052 3125 4.248058 GGTAAGAACTAGCCTTAACGCAA 58.752 43.478 6.73 0.00 0.00 4.85
3053 3126 3.258872 TGGTAAGAACTAGCCTTAACGCA 59.741 43.478 12.91 0.00 36.78 5.24
3054 3127 3.853475 TGGTAAGAACTAGCCTTAACGC 58.147 45.455 12.91 0.00 36.78 4.84
3055 3128 5.476614 AGTTGGTAAGAACTAGCCTTAACG 58.523 41.667 12.91 0.00 36.78 3.18
3056 3129 7.160049 AGAAGTTGGTAAGAACTAGCCTTAAC 58.840 38.462 11.56 11.56 35.01 2.01
3057 3130 7.312415 AGAAGTTGGTAAGAACTAGCCTTAA 57.688 36.000 6.73 0.00 35.01 1.85
3058 3131 6.930068 AGAAGTTGGTAAGAACTAGCCTTA 57.070 37.500 0.00 0.00 35.01 2.69
3059 3132 5.827326 AGAAGTTGGTAAGAACTAGCCTT 57.173 39.130 0.00 0.00 35.01 4.35
3060 3133 5.105269 GCTAGAAGTTGGTAAGAACTAGCCT 60.105 44.000 0.00 0.00 42.73 4.58
3061 3134 5.110598 GCTAGAAGTTGGTAAGAACTAGCC 58.889 45.833 0.00 0.00 42.73 3.93
3062 3135 5.721232 TGCTAGAAGTTGGTAAGAACTAGC 58.279 41.667 0.46 0.46 46.16 3.42
3063 3136 7.379750 ACTTGCTAGAAGTTGGTAAGAACTAG 58.620 38.462 1.04 0.00 35.01 2.57
3067 3140 7.732996 AGTTACTTGCTAGAAGTTGGTAAGAA 58.267 34.615 1.04 0.00 34.39 2.52
3182 3255 5.700402 AAGCATGATAACAGTTACTCCCT 57.300 39.130 0.00 0.00 0.00 4.20
3243 3316 1.618837 ACGACCGGATATCCTTCCATG 59.381 52.381 19.61 7.04 35.34 3.66
3247 3320 1.325355 TGGACGACCGGATATCCTTC 58.675 55.000 19.61 13.87 39.42 3.46
3500 3588 5.161358 TCACAAATAGTCAGCTGTAACTCG 58.839 41.667 14.67 3.62 0.00 4.18
3533 3621 9.537852 TCCTTAGGAAACTTCATAGTGTACTTA 57.462 33.333 0.00 0.00 43.67 2.24
3534 3622 8.431910 TCCTTAGGAAACTTCATAGTGTACTT 57.568 34.615 0.00 0.00 43.67 2.24
3535 3623 8.431910 TTCCTTAGGAAACTTCATAGTGTACT 57.568 34.615 11.81 0.00 38.93 2.73
3536 3624 9.099454 CATTCCTTAGGAAACTTCATAGTGTAC 57.901 37.037 18.34 0.00 45.41 2.90
3537 3625 8.822805 ACATTCCTTAGGAAACTTCATAGTGTA 58.177 33.333 18.34 0.00 45.41 2.90
3538 3626 7.690256 ACATTCCTTAGGAAACTTCATAGTGT 58.310 34.615 18.34 11.03 45.41 3.55
3539 3627 9.319143 CTACATTCCTTAGGAAACTTCATAGTG 57.681 37.037 18.34 10.40 45.41 2.74
3540 3628 9.268282 TCTACATTCCTTAGGAAACTTCATAGT 57.732 33.333 18.34 8.77 45.41 2.12
3543 3631 7.554476 GCTTCTACATTCCTTAGGAAACTTCAT 59.446 37.037 18.34 0.00 45.41 2.57
3544 3632 6.879458 GCTTCTACATTCCTTAGGAAACTTCA 59.121 38.462 18.34 0.00 45.41 3.02
3545 3633 6.879458 TGCTTCTACATTCCTTAGGAAACTTC 59.121 38.462 18.34 3.27 45.41 3.01
3546 3634 6.779860 TGCTTCTACATTCCTTAGGAAACTT 58.220 36.000 18.34 7.60 45.41 2.66
3547 3635 6.374417 TGCTTCTACATTCCTTAGGAAACT 57.626 37.500 18.34 8.26 45.41 2.66
3548 3636 7.448748 TTTGCTTCTACATTCCTTAGGAAAC 57.551 36.000 18.34 1.58 45.41 2.78
3549 3637 6.151144 GCTTTGCTTCTACATTCCTTAGGAAA 59.849 38.462 18.34 0.49 45.41 3.13
3550 3638 5.648092 GCTTTGCTTCTACATTCCTTAGGAA 59.352 40.000 16.73 16.73 46.39 3.36
3551 3639 5.186198 GCTTTGCTTCTACATTCCTTAGGA 58.814 41.667 0.00 0.00 0.00 2.94
3552 3640 4.943705 TGCTTTGCTTCTACATTCCTTAGG 59.056 41.667 0.00 0.00 0.00 2.69
3553 3641 6.690194 ATGCTTTGCTTCTACATTCCTTAG 57.310 37.500 0.00 0.00 0.00 2.18
3555 3643 8.930846 ATATATGCTTTGCTTCTACATTCCTT 57.069 30.769 0.00 0.00 0.00 3.36
3646 3808 3.376234 GCACGGGTCTAATTAAAAGGGAC 59.624 47.826 0.00 0.00 0.00 4.46
3791 3954 6.819397 AAGCTTTGATAACCTACTTCCAAC 57.181 37.500 0.00 0.00 0.00 3.77
3839 4009 1.408702 CCAAAAAGGATATGGGTGCCG 59.591 52.381 0.00 0.00 41.22 5.69
3853 4023 7.286546 TCCAGATGTGTCTAATTCAACCAAAAA 59.713 33.333 0.00 0.00 32.09 1.94
3858 4028 5.245531 TGTCCAGATGTGTCTAATTCAACC 58.754 41.667 0.00 0.00 32.09 3.77
3899 4069 3.664107 TCAGTAGAGCAATTGGACACAC 58.336 45.455 7.72 0.00 0.00 3.82
3985 4768 7.194962 CCGACACTTACTTCCTTCTATCTTAC 58.805 42.308 0.00 0.00 0.00 2.34
4093 5766 2.281761 AAGTGAACCCTGCAGCGG 60.282 61.111 8.66 13.80 0.00 5.52
4212 5900 7.307989 GCAGCACTAAAATTCTGACAGAAGTAA 60.308 37.037 21.78 11.14 37.69 2.24
4265 5953 4.283722 ACATTATGGAACGGAGGGAGTATC 59.716 45.833 0.00 0.00 0.00 2.24
4267 5955 3.649843 ACATTATGGAACGGAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
4268 5956 2.478292 ACATTATGGAACGGAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
4269 5957 3.641906 ACTACATTATGGAACGGAGGGAG 59.358 47.826 0.00 0.00 0.00 4.30
4270 5958 3.386726 CACTACATTATGGAACGGAGGGA 59.613 47.826 0.00 0.00 0.00 4.20
4271 5959 3.728845 CACTACATTATGGAACGGAGGG 58.271 50.000 0.00 0.00 0.00 4.30
4272 5960 3.131396 GCACTACATTATGGAACGGAGG 58.869 50.000 0.00 0.00 0.00 4.30
4273 5961 3.131396 GGCACTACATTATGGAACGGAG 58.869 50.000 0.00 0.00 0.00 4.63
4274 5962 2.769663 AGGCACTACATTATGGAACGGA 59.230 45.455 0.00 0.00 36.02 4.69
4275 5963 3.194005 AGGCACTACATTATGGAACGG 57.806 47.619 0.00 0.00 36.02 4.44
4302 5990 7.440856 AGTTTGCAAAGTTTGACTTCTCAAAAA 59.559 29.630 19.82 3.43 45.89 1.94
4303 5991 6.928492 AGTTTGCAAAGTTTGACTTCTCAAAA 59.072 30.769 19.82 4.02 45.89 2.44
4304 5992 6.454795 AGTTTGCAAAGTTTGACTTCTCAAA 58.545 32.000 19.82 14.41 42.93 2.69
4305 5993 6.024552 AGTTTGCAAAGTTTGACTTCTCAA 57.975 33.333 19.82 9.48 37.47 3.02
4306 5994 5.643379 AGTTTGCAAAGTTTGACTTCTCA 57.357 34.783 19.82 3.64 37.47 3.27
4307 5995 6.951256 AAAGTTTGCAAAGTTTGACTTCTC 57.049 33.333 33.55 11.11 37.47 2.87
4315 6003 5.861222 CTTGGTCAAAGTTTGCAAAGTTT 57.139 34.783 30.47 30.47 41.01 2.66
4360 6048 9.681062 GGGCCTATATATTTTTGCTATTGTAGA 57.319 33.333 0.84 0.00 0.00 2.59
4361 6049 9.686683 AGGGCCTATATATTTTTGCTATTGTAG 57.313 33.333 2.82 0.00 0.00 2.74
4362 6050 9.461312 CAGGGCCTATATATTTTTGCTATTGTA 57.539 33.333 5.28 0.00 0.00 2.41
4363 6051 7.950124 ACAGGGCCTATATATTTTTGCTATTGT 59.050 33.333 5.28 0.00 0.00 2.71
4364 6052 8.353423 ACAGGGCCTATATATTTTTGCTATTG 57.647 34.615 5.28 0.00 0.00 1.90
4365 6053 8.956446 AACAGGGCCTATATATTTTTGCTATT 57.044 30.769 5.28 0.00 0.00 1.73
4366 6054 8.806146 CAAACAGGGCCTATATATTTTTGCTAT 58.194 33.333 5.28 0.00 0.00 2.97
4367 6055 7.232534 CCAAACAGGGCCTATATATTTTTGCTA 59.767 37.037 5.28 0.00 0.00 3.49
4368 6056 6.041979 CCAAACAGGGCCTATATATTTTTGCT 59.958 38.462 5.28 0.00 0.00 3.91
4369 6057 6.183360 ACCAAACAGGGCCTATATATTTTTGC 60.183 38.462 5.28 0.00 43.89 3.68
4370 6058 7.360113 ACCAAACAGGGCCTATATATTTTTG 57.640 36.000 5.28 7.33 43.89 2.44
4371 6059 7.621683 TGAACCAAACAGGGCCTATATATTTTT 59.378 33.333 5.28 0.00 43.89 1.94
4372 6060 7.129425 TGAACCAAACAGGGCCTATATATTTT 58.871 34.615 5.28 0.00 43.89 1.82
4373 6061 6.678547 TGAACCAAACAGGGCCTATATATTT 58.321 36.000 5.28 0.00 43.89 1.40
4374 6062 6.274322 TGAACCAAACAGGGCCTATATATT 57.726 37.500 5.28 0.00 43.89 1.28
4375 6063 5.922960 TGAACCAAACAGGGCCTATATAT 57.077 39.130 5.28 0.00 43.89 0.86
4376 6064 5.922960 ATGAACCAAACAGGGCCTATATA 57.077 39.130 5.28 0.00 43.89 0.86
4377 6065 4.814224 ATGAACCAAACAGGGCCTATAT 57.186 40.909 5.28 0.00 43.89 0.86
4378 6066 5.192923 ACTTATGAACCAAACAGGGCCTATA 59.807 40.000 5.28 0.00 43.89 1.31
4379 6067 4.017499 ACTTATGAACCAAACAGGGCCTAT 60.017 41.667 5.28 0.00 43.89 2.57
4380 6068 3.332485 ACTTATGAACCAAACAGGGCCTA 59.668 43.478 5.28 0.00 43.89 3.93
4381 6069 2.110011 ACTTATGAACCAAACAGGGCCT 59.890 45.455 0.00 0.00 43.89 5.19
4382 6070 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
4383 6071 2.492088 GGACTTATGAACCAAACAGGGC 59.508 50.000 0.00 0.00 43.89 5.19
4384 6072 4.034285 AGGACTTATGAACCAAACAGGG 57.966 45.455 0.00 0.00 43.89 4.45
4385 6073 5.045869 TCCTAGGACTTATGAACCAAACAGG 60.046 44.000 7.62 0.00 45.67 4.00
4386 6074 5.875359 GTCCTAGGACTTATGAACCAAACAG 59.125 44.000 31.12 0.00 41.57 3.16
4387 6075 5.801380 GTCCTAGGACTTATGAACCAAACA 58.199 41.667 31.12 0.00 41.57 2.83
4413 6101 7.757611 TGGGACTTATAAGTTGGGACTAAAAA 58.242 34.615 18.96 0.00 39.88 1.94
4414 6102 7.332433 TGGGACTTATAAGTTGGGACTAAAA 57.668 36.000 18.96 0.00 39.88 1.52
4415 6103 6.956102 TGGGACTTATAAGTTGGGACTAAA 57.044 37.500 18.96 0.00 39.88 1.85
4416 6104 6.502863 ACTTGGGACTTATAAGTTGGGACTAA 59.497 38.462 18.96 10.32 39.88 2.24
4417 6105 6.027482 ACTTGGGACTTATAAGTTGGGACTA 58.973 40.000 18.96 3.96 39.88 2.59
4418 6106 4.850386 ACTTGGGACTTATAAGTTGGGACT 59.150 41.667 18.96 0.00 39.88 3.85
4419 6107 5.175388 ACTTGGGACTTATAAGTTGGGAC 57.825 43.478 18.96 6.19 39.88 4.46
4420 6108 4.226620 GGACTTGGGACTTATAAGTTGGGA 59.773 45.833 18.96 6.15 39.88 4.37
4421 6109 4.524053 GGACTTGGGACTTATAAGTTGGG 58.476 47.826 18.96 10.37 39.88 4.12
4422 6110 4.227527 AGGGACTTGGGACTTATAAGTTGG 59.772 45.833 18.96 10.07 34.84 3.77
4423 6111 5.437191 AGGGACTTGGGACTTATAAGTTG 57.563 43.478 18.96 9.81 34.84 3.16
4424 6112 7.578458 TTTAGGGACTTGGGACTTATAAGTT 57.422 36.000 18.96 2.29 38.78 2.66
4425 6113 7.578458 TTTTAGGGACTTGGGACTTATAAGT 57.422 36.000 18.05 18.05 40.66 2.24
4426 6114 8.107729 ACTTTTTAGGGACTTGGGACTTATAAG 58.892 37.037 11.05 11.05 41.75 1.73
4427 6115 7.992295 ACTTTTTAGGGACTTGGGACTTATAA 58.008 34.615 0.00 0.00 41.75 0.98
4428 6116 7.311486 GGACTTTTTAGGGACTTGGGACTTATA 60.311 40.741 0.00 0.00 41.75 0.98
4429 6117 6.464530 ACTTTTTAGGGACTTGGGACTTAT 57.535 37.500 0.00 0.00 41.75 1.73
4430 6118 5.221986 GGACTTTTTAGGGACTTGGGACTTA 60.222 44.000 0.00 0.00 41.75 2.24
4431 6119 4.447325 GGACTTTTTAGGGACTTGGGACTT 60.447 45.833 0.00 0.00 41.75 3.01
4432 6120 3.074094 GGACTTTTTAGGGACTTGGGACT 59.926 47.826 0.00 0.00 41.75 3.85
4433 6121 3.418995 GGACTTTTTAGGGACTTGGGAC 58.581 50.000 0.00 0.00 41.75 4.46
4434 6122 2.377531 GGGACTTTTTAGGGACTTGGGA 59.622 50.000 0.00 0.00 41.75 4.37
4435 6123 2.378886 AGGGACTTTTTAGGGACTTGGG 59.621 50.000 0.00 0.00 34.75 4.12
4436 6124 3.808834 AGGGACTTTTTAGGGACTTGG 57.191 47.619 0.00 0.00 34.75 3.61
4437 6125 4.288887 AGGTAGGGACTTTTTAGGGACTTG 59.711 45.833 0.00 0.00 39.49 3.16
4438 6126 4.288887 CAGGTAGGGACTTTTTAGGGACTT 59.711 45.833 0.00 0.00 39.49 3.01
4439 6127 3.844804 CAGGTAGGGACTTTTTAGGGACT 59.155 47.826 0.00 0.00 41.75 3.85
4440 6128 3.586174 ACAGGTAGGGACTTTTTAGGGAC 59.414 47.826 0.00 0.00 41.75 4.46
4441 6129 3.878086 ACAGGTAGGGACTTTTTAGGGA 58.122 45.455 0.00 0.00 41.75 4.20
4442 6130 4.652679 AACAGGTAGGGACTTTTTAGGG 57.347 45.455 0.00 0.00 41.75 3.53
4443 6131 4.765339 CCAAACAGGTAGGGACTTTTTAGG 59.235 45.833 0.00 0.00 41.75 2.69
4444 6132 5.959618 CCAAACAGGTAGGGACTTTTTAG 57.040 43.478 0.00 0.00 41.75 1.85
4458 6146 0.478507 AGTCCCAGGAACCAAACAGG 59.521 55.000 0.00 0.00 45.67 4.00
4459 6147 2.364972 AAGTCCCAGGAACCAAACAG 57.635 50.000 0.00 0.00 0.00 3.16
4460 6148 5.073965 ACTTATAAGTCCCAGGAACCAAACA 59.926 40.000 12.50 0.00 32.86 2.83
4461 6149 5.567430 ACTTATAAGTCCCAGGAACCAAAC 58.433 41.667 12.50 0.00 32.86 2.93
4462 6150 5.853572 ACTTATAAGTCCCAGGAACCAAA 57.146 39.130 12.50 0.00 32.86 3.28
4481 6169 9.448587 AGTTGTAATATGGTCTTATAGGGACTT 57.551 33.333 7.52 0.00 41.75 3.01
4491 6179 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
4502 6190 9.577222 GAGAGTCTTATAGGGACTTATAGTTGT 57.423 37.037 10.43 0.00 43.13 3.32
4503 6191 9.016438 GGAGAGTCTTATAGGGACTTATAGTTG 57.984 40.741 10.43 0.00 43.13 3.16
4504 6192 8.962205 AGGAGAGTCTTATAGGGACTTATAGTT 58.038 37.037 10.43 0.00 43.13 2.24
4505 6193 8.528543 AGGAGAGTCTTATAGGGACTTATAGT 57.471 38.462 10.43 0.00 43.13 2.12
4506 6194 9.238368 CAAGGAGAGTCTTATAGGGACTTATAG 57.762 40.741 10.43 0.00 43.13 1.31
4507 6195 8.956860 TCAAGGAGAGTCTTATAGGGACTTATA 58.043 37.037 10.43 0.00 43.13 0.98
4508 6196 7.827787 TCAAGGAGAGTCTTATAGGGACTTAT 58.172 38.462 10.43 4.90 43.13 1.73
4509 6197 7.129038 TCTCAAGGAGAGTCTTATAGGGACTTA 59.871 40.741 10.43 0.00 43.13 2.24
4510 6198 6.068735 TCTCAAGGAGAGTCTTATAGGGACTT 60.069 42.308 10.43 3.61 43.13 3.01
4511 6199 5.433712 TCTCAAGGAGAGTCTTATAGGGACT 59.566 44.000 9.30 9.30 45.37 3.85
4512 6200 5.697067 TCTCAAGGAGAGTCTTATAGGGAC 58.303 45.833 0.00 0.00 44.98 4.46
4513 6201 5.996271 TCTCAAGGAGAGTCTTATAGGGA 57.004 43.478 0.00 0.00 44.98 4.20
4539 6227 5.960811 TGGGCATTTGGGACTTATGAAATAA 59.039 36.000 0.00 0.00 36.20 1.40
4540 6228 5.362430 GTGGGCATTTGGGACTTATGAAATA 59.638 40.000 0.00 0.00 0.00 1.40
4541 6229 4.162131 GTGGGCATTTGGGACTTATGAAAT 59.838 41.667 0.00 0.00 0.00 2.17
4542 6230 3.513515 GTGGGCATTTGGGACTTATGAAA 59.486 43.478 0.00 0.00 0.00 2.69
4543 6231 3.096092 GTGGGCATTTGGGACTTATGAA 58.904 45.455 0.00 0.00 0.00 2.57
4544 6232 2.311542 AGTGGGCATTTGGGACTTATGA 59.688 45.455 0.00 0.00 0.00 2.15
4545 6233 2.738743 AGTGGGCATTTGGGACTTATG 58.261 47.619 0.00 0.00 0.00 1.90
4546 6234 3.473113 AAGTGGGCATTTGGGACTTAT 57.527 42.857 0.00 0.00 0.00 1.73
4547 6235 2.990740 AAGTGGGCATTTGGGACTTA 57.009 45.000 0.00 0.00 0.00 2.24
4548 6236 2.101640 AAAGTGGGCATTTGGGACTT 57.898 45.000 0.00 0.00 0.00 3.01
4549 6237 2.990740 TAAAGTGGGCATTTGGGACT 57.009 45.000 0.00 0.00 0.00 3.85
4550 6238 4.503910 GATTTAAAGTGGGCATTTGGGAC 58.496 43.478 0.00 0.00 0.00 4.46
4551 6239 3.517500 GGATTTAAAGTGGGCATTTGGGA 59.482 43.478 0.00 0.00 0.00 4.37
4552 6240 3.370421 GGGATTTAAAGTGGGCATTTGGG 60.370 47.826 0.00 0.00 0.00 4.12
4553 6241 3.519107 AGGGATTTAAAGTGGGCATTTGG 59.481 43.478 0.00 0.00 0.00 3.28
4554 6242 4.824479 AGGGATTTAAAGTGGGCATTTG 57.176 40.909 0.00 0.00 0.00 2.32
4555 6243 7.844269 ACTTATAGGGATTTAAAGTGGGCATTT 59.156 33.333 0.00 0.00 0.00 2.32
4556 6244 7.362234 ACTTATAGGGATTTAAAGTGGGCATT 58.638 34.615 0.00 0.00 0.00 3.56
4557 6245 6.922540 ACTTATAGGGATTTAAAGTGGGCAT 58.077 36.000 0.00 0.00 0.00 4.40
4558 6246 6.335781 ACTTATAGGGATTTAAAGTGGGCA 57.664 37.500 0.00 0.00 0.00 5.36
4559 6247 5.768662 GGACTTATAGGGATTTAAAGTGGGC 59.231 44.000 0.00 0.00 30.83 5.36
4560 6248 6.102762 AGGGACTTATAGGGATTTAAAGTGGG 59.897 42.308 0.00 0.00 27.25 4.61
4561 6249 7.147373 TGAGGGACTTATAGGGATTTAAAGTGG 60.147 40.741 0.00 0.00 41.55 4.00
4562 6250 7.802117 TGAGGGACTTATAGGGATTTAAAGTG 58.198 38.462 0.00 0.00 41.55 3.16
4563 6251 8.440771 CATGAGGGACTTATAGGGATTTAAAGT 58.559 37.037 0.00 0.00 41.55 2.66
4564 6252 8.440771 ACATGAGGGACTTATAGGGATTTAAAG 58.559 37.037 0.00 0.00 41.55 1.85
4565 6253 8.344939 ACATGAGGGACTTATAGGGATTTAAA 57.655 34.615 0.00 0.00 41.55 1.52
4566 6254 7.947782 ACATGAGGGACTTATAGGGATTTAA 57.052 36.000 0.00 0.00 41.55 1.52
4567 6255 7.947782 AACATGAGGGACTTATAGGGATTTA 57.052 36.000 0.00 0.00 41.55 1.40
4568 6256 6.848562 AACATGAGGGACTTATAGGGATTT 57.151 37.500 0.00 0.00 41.55 2.17
4569 6257 6.410853 CCAAACATGAGGGACTTATAGGGATT 60.411 42.308 0.00 0.00 41.55 3.01
4570 6258 5.073691 CCAAACATGAGGGACTTATAGGGAT 59.926 44.000 0.00 0.00 41.55 3.85
4571 6259 4.412199 CCAAACATGAGGGACTTATAGGGA 59.588 45.833 0.00 0.00 41.55 4.20
4572 6260 4.166144 ACCAAACATGAGGGACTTATAGGG 59.834 45.833 0.00 0.00 41.55 3.53
4573 6261 5.373812 ACCAAACATGAGGGACTTATAGG 57.626 43.478 0.00 0.00 41.55 2.57
4574 6262 8.265055 TCTAAACCAAACATGAGGGACTTATAG 58.735 37.037 0.00 0.53 41.55 1.31
4575 6263 8.153221 TCTAAACCAAACATGAGGGACTTATA 57.847 34.615 0.00 0.00 41.55 0.98
4576 6264 7.027874 TCTAAACCAAACATGAGGGACTTAT 57.972 36.000 0.00 0.00 41.55 1.73
4577 6265 6.442541 TCTAAACCAAACATGAGGGACTTA 57.557 37.500 0.00 1.55 41.55 2.24
4578 6266 5.319043 TCTAAACCAAACATGAGGGACTT 57.681 39.130 0.00 0.49 41.55 3.01
4580 6268 4.399303 CCATCTAAACCAAACATGAGGGAC 59.601 45.833 0.00 0.00 0.00 4.46
4581 6269 4.569653 CCCATCTAAACCAAACATGAGGGA 60.570 45.833 0.00 0.00 33.23 4.20
4582 6270 3.701040 CCCATCTAAACCAAACATGAGGG 59.299 47.826 0.00 0.00 0.00 4.30
4583 6271 4.399303 GTCCCATCTAAACCAAACATGAGG 59.601 45.833 0.00 0.35 0.00 3.86
4584 6272 5.256474 AGTCCCATCTAAACCAAACATGAG 58.744 41.667 0.00 0.00 0.00 2.90
4585 6273 5.255397 AGTCCCATCTAAACCAAACATGA 57.745 39.130 0.00 0.00 0.00 3.07
4586 6274 5.982890 AAGTCCCATCTAAACCAAACATG 57.017 39.130 0.00 0.00 0.00 3.21
4587 6275 7.998964 CCTATAAGTCCCATCTAAACCAAACAT 59.001 37.037 0.00 0.00 0.00 2.71
4588 6276 7.343357 CCTATAAGTCCCATCTAAACCAAACA 58.657 38.462 0.00 0.00 0.00 2.83
4589 6277 6.771267 CCCTATAAGTCCCATCTAAACCAAAC 59.229 42.308 0.00 0.00 0.00 2.93
4590 6278 6.679303 TCCCTATAAGTCCCATCTAAACCAAA 59.321 38.462 0.00 0.00 0.00 3.28
4591 6279 6.100714 GTCCCTATAAGTCCCATCTAAACCAA 59.899 42.308 0.00 0.00 0.00 3.67
4592 6280 5.605488 GTCCCTATAAGTCCCATCTAAACCA 59.395 44.000 0.00 0.00 0.00 3.67
4593 6281 5.845065 AGTCCCTATAAGTCCCATCTAAACC 59.155 44.000 0.00 0.00 0.00 3.27
4594 6282 6.997942 AGTCCCTATAAGTCCCATCTAAAC 57.002 41.667 0.00 0.00 0.00 2.01
4595 6283 8.401955 AAAAGTCCCTATAAGTCCCATCTAAA 57.598 34.615 0.00 0.00 0.00 1.85
4596 6284 8.401955 AAAAAGTCCCTATAAGTCCCATCTAA 57.598 34.615 0.00 0.00 0.00 2.10
4598 6286 6.910259 AAAAAGTCCCTATAAGTCCCATCT 57.090 37.500 0.00 0.00 0.00 2.90
4618 6306 9.081204 GGACTTATTGGTTTAGGGACTTAAAAA 57.919 33.333 0.00 0.00 41.75 1.94
4619 6307 7.670979 GGGACTTATTGGTTTAGGGACTTAAAA 59.329 37.037 0.00 0.00 41.75 1.52
4620 6308 7.018851 AGGGACTTATTGGTTTAGGGACTTAAA 59.981 37.037 0.00 0.00 34.75 1.52
4621 6309 6.506413 AGGGACTTATTGGTTTAGGGACTTAA 59.494 38.462 0.00 0.00 34.75 1.85
4622 6310 6.034003 AGGGACTTATTGGTTTAGGGACTTA 58.966 40.000 0.00 0.00 34.75 2.24
4623 6311 4.856182 AGGGACTTATTGGTTTAGGGACTT 59.144 41.667 0.00 0.00 34.75 3.01
4624 6312 4.227527 CAGGGACTTATTGGTTTAGGGACT 59.772 45.833 0.00 0.00 39.39 3.85
4625 6313 4.524053 CAGGGACTTATTGGTTTAGGGAC 58.476 47.826 0.00 0.00 34.60 4.46
4626 6314 3.526019 CCAGGGACTTATTGGTTTAGGGA 59.474 47.826 0.00 0.00 34.60 4.20
4627 6315 3.526019 TCCAGGGACTTATTGGTTTAGGG 59.474 47.826 0.00 0.00 34.60 3.53
4628 6316 4.855298 TCCAGGGACTTATTGGTTTAGG 57.145 45.455 0.00 0.00 34.60 2.69
4629 6317 6.007703 TGTTTCCAGGGACTTATTGGTTTAG 58.992 40.000 0.00 0.00 34.60 1.85
4630 6318 5.954757 TGTTTCCAGGGACTTATTGGTTTA 58.045 37.500 0.00 0.00 34.60 2.01
4631 6319 4.810345 TGTTTCCAGGGACTTATTGGTTT 58.190 39.130 0.00 0.00 34.60 3.27
4632 6320 4.463050 TGTTTCCAGGGACTTATTGGTT 57.537 40.909 0.00 0.00 34.60 3.67
4633 6321 4.463050 TTGTTTCCAGGGACTTATTGGT 57.537 40.909 0.00 0.00 34.60 3.67
4634 6322 4.586841 TGTTTGTTTCCAGGGACTTATTGG 59.413 41.667 0.00 0.00 34.60 3.16
4635 6323 5.508994 GGTGTTTGTTTCCAGGGACTTATTG 60.509 44.000 0.00 0.00 34.60 1.90
4636 6324 4.587262 GGTGTTTGTTTCCAGGGACTTATT 59.413 41.667 0.00 0.00 34.60 1.40
4637 6325 4.149598 GGTGTTTGTTTCCAGGGACTTAT 58.850 43.478 0.00 0.00 34.60 1.73
4638 6326 3.558033 GGTGTTTGTTTCCAGGGACTTA 58.442 45.455 0.00 0.00 34.60 2.24
4639 6327 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
4640 6328 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
4641 6329 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
4642 6330 0.930726 AGGGTGTTTGTTTCCAGGGA 59.069 50.000 0.00 0.00 0.00 4.20
4643 6331 1.328279 GAGGGTGTTTGTTTCCAGGG 58.672 55.000 0.00 0.00 0.00 4.45
4644 6332 2.065899 TGAGGGTGTTTGTTTCCAGG 57.934 50.000 0.00 0.00 0.00 4.45
4645 6333 5.243730 ACATTATGAGGGTGTTTGTTTCCAG 59.756 40.000 0.00 0.00 0.00 3.86
4646 6334 5.010516 CACATTATGAGGGTGTTTGTTTCCA 59.989 40.000 0.00 0.00 0.00 3.53
4647 6335 5.242838 TCACATTATGAGGGTGTTTGTTTCC 59.757 40.000 0.00 0.00 34.27 3.13
4648 6336 6.325919 TCACATTATGAGGGTGTTTGTTTC 57.674 37.500 0.00 0.00 34.27 2.78
4649 6337 6.723298 TTCACATTATGAGGGTGTTTGTTT 57.277 33.333 0.00 0.00 38.99 2.83
4650 6338 6.323739 AGTTTCACATTATGAGGGTGTTTGTT 59.676 34.615 0.00 0.00 38.99 2.83
4651 6339 5.833131 AGTTTCACATTATGAGGGTGTTTGT 59.167 36.000 0.00 0.00 38.99 2.83
4652 6340 6.331369 AGTTTCACATTATGAGGGTGTTTG 57.669 37.500 0.00 0.00 38.99 2.93
4653 6341 7.001674 TGTAGTTTCACATTATGAGGGTGTTT 58.998 34.615 0.00 0.00 38.99 2.83
4654 6342 6.539173 TGTAGTTTCACATTATGAGGGTGTT 58.461 36.000 0.00 0.00 38.99 3.32
4655 6343 6.121776 TGTAGTTTCACATTATGAGGGTGT 57.878 37.500 0.00 0.00 38.99 4.16
4656 6344 7.050377 AGATGTAGTTTCACATTATGAGGGTG 58.950 38.462 0.00 0.00 39.25 4.61
4657 6345 7.200434 AGATGTAGTTTCACATTATGAGGGT 57.800 36.000 0.00 0.00 39.25 4.34
4658 6346 9.046296 GTAAGATGTAGTTTCACATTATGAGGG 57.954 37.037 0.00 0.00 39.25 4.30
4659 6347 9.599866 TGTAAGATGTAGTTTCACATTATGAGG 57.400 33.333 0.00 0.00 39.25 3.86
4667 6355 9.725019 AGATTCATTGTAAGATGTAGTTTCACA 57.275 29.630 0.00 0.00 0.00 3.58
4725 6413 6.293004 TGACCAAGTTTGTGGAGAATTTTT 57.707 33.333 0.00 0.00 41.65 1.94
4726 6414 5.930837 TGACCAAGTTTGTGGAGAATTTT 57.069 34.783 0.00 0.00 41.65 1.82
4727 6415 5.930837 TTGACCAAGTTTGTGGAGAATTT 57.069 34.783 0.00 0.00 41.65 1.82
4728 6416 5.422012 ACTTTGACCAAGTTTGTGGAGAATT 59.578 36.000 0.00 0.00 43.89 2.17
4729 6417 4.956075 ACTTTGACCAAGTTTGTGGAGAAT 59.044 37.500 0.00 0.00 43.89 2.40
4730 6418 4.340617 ACTTTGACCAAGTTTGTGGAGAA 58.659 39.130 0.00 0.00 43.89 2.87
4731 6419 3.963129 ACTTTGACCAAGTTTGTGGAGA 58.037 40.909 0.00 0.00 43.89 3.71
4741 6429 6.473455 GTCAAATCTCACAAACTTTGACCAAG 59.527 38.462 8.55 0.96 45.88 3.61
4742 6430 6.329496 GTCAAATCTCACAAACTTTGACCAA 58.671 36.000 8.55 0.00 45.88 3.67
4743 6431 5.890334 GTCAAATCTCACAAACTTTGACCA 58.110 37.500 8.55 0.00 45.88 4.02
4746 6434 8.303156 TGAAAAGTCAAATCTCACAAACTTTGA 58.697 29.630 8.55 0.00 37.12 2.69
4747 6435 8.464770 TGAAAAGTCAAATCTCACAAACTTTG 57.535 30.769 0.00 0.00 37.12 2.77
4748 6436 9.487790 TTTGAAAAGTCAAATCTCACAAACTTT 57.512 25.926 0.00 0.00 46.48 2.66
4775 6463 9.726438 GTTCCATAATGTAGTGCCTATAGATTT 57.274 33.333 0.00 0.00 0.00 2.17
4776 6464 8.035394 CGTTCCATAATGTAGTGCCTATAGATT 58.965 37.037 0.00 0.00 0.00 2.40
4777 6465 7.363880 CCGTTCCATAATGTAGTGCCTATAGAT 60.364 40.741 0.00 0.00 0.00 1.98
4778 6466 6.071560 CCGTTCCATAATGTAGTGCCTATAGA 60.072 42.308 0.00 0.00 0.00 1.98
4779 6467 6.071560 TCCGTTCCATAATGTAGTGCCTATAG 60.072 42.308 0.00 0.00 0.00 1.31
4780 6468 5.776208 TCCGTTCCATAATGTAGTGCCTATA 59.224 40.000 0.00 0.00 0.00 1.31
4781 6469 4.591498 TCCGTTCCATAATGTAGTGCCTAT 59.409 41.667 0.00 0.00 0.00 2.57
4782 6470 3.962063 TCCGTTCCATAATGTAGTGCCTA 59.038 43.478 0.00 0.00 0.00 3.93
4783 6471 2.769663 TCCGTTCCATAATGTAGTGCCT 59.230 45.455 0.00 0.00 0.00 4.75
4784 6472 3.131396 CTCCGTTCCATAATGTAGTGCC 58.869 50.000 0.00 0.00 0.00 5.01
4785 6473 3.131396 CCTCCGTTCCATAATGTAGTGC 58.869 50.000 0.00 0.00 0.00 4.40
4786 6474 3.386726 TCCCTCCGTTCCATAATGTAGTG 59.613 47.826 0.00 0.00 0.00 2.74
4787 6475 3.641906 CTCCCTCCGTTCCATAATGTAGT 59.358 47.826 0.00 0.00 0.00 2.73
4788 6476 3.641906 ACTCCCTCCGTTCCATAATGTAG 59.358 47.826 0.00 0.00 0.00 2.74
4789 6477 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
4790 6478 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
4791 6479 4.891992 ATACTCCCTCCGTTCCATAATG 57.108 45.455 0.00 0.00 0.00 1.90
4792 6480 5.247792 GGTAATACTCCCTCCGTTCCATAAT 59.752 44.000 0.00 0.00 0.00 1.28
4793 6481 4.590222 GGTAATACTCCCTCCGTTCCATAA 59.410 45.833 0.00 0.00 0.00 1.90
4794 6482 4.140853 AGGTAATACTCCCTCCGTTCCATA 60.141 45.833 0.00 0.00 0.00 2.74
4795 6483 2.970640 GGTAATACTCCCTCCGTTCCAT 59.029 50.000 0.00 0.00 0.00 3.41
4796 6484 2.023695 AGGTAATACTCCCTCCGTTCCA 60.024 50.000 0.00 0.00 0.00 3.53
4797 6485 2.675583 AGGTAATACTCCCTCCGTTCC 58.324 52.381 0.00 0.00 0.00 3.62
4798 6486 4.277921 CAGTAGGTAATACTCCCTCCGTTC 59.722 50.000 0.00 0.00 43.13 3.95
4799 6487 4.213513 CAGTAGGTAATACTCCCTCCGTT 58.786 47.826 0.00 0.00 43.13 4.44
4800 6488 3.203934 ACAGTAGGTAATACTCCCTCCGT 59.796 47.826 0.00 0.00 43.13 4.69
4801 6489 3.830121 ACAGTAGGTAATACTCCCTCCG 58.170 50.000 0.00 0.00 43.13 4.63
4802 6490 5.456779 AGAACAGTAGGTAATACTCCCTCC 58.543 45.833 0.00 0.00 43.13 4.30
4803 6491 7.421087 AAAGAACAGTAGGTAATACTCCCTC 57.579 40.000 0.00 0.00 43.13 4.30
4804 6492 7.809880 AAAAGAACAGTAGGTAATACTCCCT 57.190 36.000 0.00 0.00 43.13 4.20
4835 6524 1.480137 CAAAATGCCCCGCAAATCCTA 59.520 47.619 0.00 0.00 43.62 2.94
4854 6543 2.933906 GACAAAGAACCGACAAGACACA 59.066 45.455 0.00 0.00 0.00 3.72
4865 6554 2.875933 TCCACATTCACGACAAAGAACC 59.124 45.455 0.00 0.00 0.00 3.62
4873 6566 2.351726 GCCTAACATCCACATTCACGAC 59.648 50.000 0.00 0.00 0.00 4.34
4916 6610 9.055248 GTCAAAACTGATACGAAAATGATTCAG 57.945 33.333 0.00 0.00 37.27 3.02
4962 6657 8.297426 TCTGACGATCTTATACATCGCTAAAAT 58.703 33.333 11.53 0.00 45.83 1.82
5194 6905 3.181477 TGACAAAACCTCAATGTTGGCTG 60.181 43.478 0.00 0.00 29.97 4.85
5246 6957 7.157347 CCTGAATCGATGAATATTCCAAGAGA 58.843 38.462 12.90 5.96 32.25 3.10
5282 6993 3.680937 CCACTTTGCATTTGCCATAGTTG 59.319 43.478 0.00 0.00 41.18 3.16
5336 7047 9.136323 ACTCTAAACAAAACTGATCCAAAGATT 57.864 29.630 0.00 0.00 30.90 2.40
5454 7165 3.084786 ACATGCTTTCCCTTCTGTTAGC 58.915 45.455 0.00 0.00 0.00 3.09
5521 7232 2.871096 ATACCACCGCCTTTTGAAGA 57.129 45.000 0.00 0.00 0.00 2.87
5532 7243 5.909477 TCAAGTAGAACCATTATACCACCG 58.091 41.667 0.00 0.00 0.00 4.94
5543 7254 4.278310 TCCGAGATGATCAAGTAGAACCA 58.722 43.478 0.00 0.00 0.00 3.67
5651 7364 5.230323 GGATTCCCCTACTACATTCCTTC 57.770 47.826 0.00 0.00 0.00 3.46
5730 7443 7.703621 GCTTGTAAATACATTCTAGTCGTGGTA 59.296 37.037 0.00 0.00 35.89 3.25
5844 7568 5.335504 GCACTCTCTTGCTAAAGAATGCTTT 60.336 40.000 3.62 3.62 41.89 3.51
5932 7665 3.772025 ACTCTCCATAGTTCCCAGACAAG 59.228 47.826 0.00 0.00 0.00 3.16
5934 7667 3.366396 GACTCTCCATAGTTCCCAGACA 58.634 50.000 0.00 0.00 0.00 3.41
6039 7774 4.834496 TGAAGGAGATCAAATTTGCCACTT 59.166 37.500 13.54 13.88 0.00 3.16
6139 7879 5.500234 CTCCATGAAGGACCATCTGTTAAA 58.500 41.667 0.00 0.00 43.07 1.52
6168 7908 6.018669 ACAAGCTCGTCTAGTTTTCTTTTCTG 60.019 38.462 0.00 0.00 0.00 3.02
6269 8013 3.181531 GCCACAACATTCGCAAATAAAGC 60.182 43.478 0.00 0.00 0.00 3.51
6271 8015 3.321497 GGCCACAACATTCGCAAATAAA 58.679 40.909 0.00 0.00 0.00 1.40
6274 8018 0.037419 GGGCCACAACATTCGCAAAT 60.037 50.000 4.39 0.00 0.00 2.32
6313 8058 8.210265 TCAGTATTGCCATGAATGATTACAGTA 58.790 33.333 0.00 0.00 0.00 2.74
6315 8060 7.500720 TCAGTATTGCCATGAATGATTACAG 57.499 36.000 0.00 0.00 0.00 2.74
6316 8061 8.467963 AATCAGTATTGCCATGAATGATTACA 57.532 30.769 5.52 0.00 34.94 2.41
6405 8150 2.240160 ACACAACACCACAAGTTAGGGA 59.760 45.455 0.00 0.00 0.00 4.20
6419 8164 6.342111 TCACTTCTTATACACACACACAACA 58.658 36.000 0.00 0.00 0.00 3.33
6422 8167 8.581578 TCTATTCACTTCTTATACACACACACA 58.418 33.333 0.00 0.00 0.00 3.72
6423 8168 8.981724 TCTATTCACTTCTTATACACACACAC 57.018 34.615 0.00 0.00 0.00 3.82
6424 8169 9.586435 CATCTATTCACTTCTTATACACACACA 57.414 33.333 0.00 0.00 0.00 3.72
6425 8170 9.035607 CCATCTATTCACTTCTTATACACACAC 57.964 37.037 0.00 0.00 0.00 3.82
6426 8171 8.758829 ACCATCTATTCACTTCTTATACACACA 58.241 33.333 0.00 0.00 0.00 3.72
6513 8265 5.875224 TGAATAAAGTGACAGATGGTCCAA 58.125 37.500 0.00 0.00 46.38 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.