Multiple sequence alignment - TraesCS2D01G492400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G492400 chr2D 100.000 7311 0 0 1 7311 590156143 590163453 0.000000e+00 13501.0
1 TraesCS2D01G492400 chr2D 80.576 278 44 10 6601 6874 395940184 395940455 9.610000e-49 206.0
2 TraesCS2D01G492400 chr2D 94.545 55 2 1 6419 6473 627260978 627260925 4.700000e-12 84.2
3 TraesCS2D01G492400 chr2B 90.975 5784 309 110 12 5637 714785759 714791487 0.000000e+00 7592.0
4 TraesCS2D01G492400 chr2B 95.648 1011 36 3 5424 6433 714791211 714792214 0.000000e+00 1616.0
5 TraesCS2D01G492400 chr2B 92.780 554 27 8 6477 7030 714792213 714792753 0.000000e+00 789.0
6 TraesCS2D01G492400 chr2A 96.166 2295 60 8 4157 6433 724527870 724530154 0.000000e+00 3725.0
7 TraesCS2D01G492400 chr2A 87.240 1395 71 54 12 1344 724523533 724524882 0.000000e+00 1491.0
8 TraesCS2D01G492400 chr2A 86.671 1418 66 36 2702 4069 724526503 724527847 0.000000e+00 1458.0
9 TraesCS2D01G492400 chr2A 91.181 635 36 8 6477 7107 724530153 724530771 0.000000e+00 845.0
10 TraesCS2D01G492400 chr2A 88.842 708 23 11 1991 2666 724525831 724526514 0.000000e+00 819.0
11 TraesCS2D01G492400 chr2A 87.066 317 9 5 1706 1995 724525441 724525752 5.470000e-86 329.0
12 TraesCS2D01G492400 chr2A 87.726 277 31 2 5424 5700 724529082 724529355 3.290000e-83 320.0
13 TraesCS2D01G492400 chr2A 86.935 199 17 6 1454 1652 724525244 724525433 1.600000e-51 215.0
14 TraesCS2D01G492400 chr2A 91.525 59 2 3 6421 6479 498099536 498099481 2.190000e-10 78.7
15 TraesCS2D01G492400 chr5B 83.268 257 39 4 6625 6879 428579555 428579809 4.410000e-57 233.0
16 TraesCS2D01G492400 chr5B 90.370 135 13 0 7158 7292 605313962 605314096 2.100000e-40 178.0
17 TraesCS2D01G492400 chr5B 96.078 51 2 0 6423 6473 296852671 296852621 4.700000e-12 84.2
18 TraesCS2D01G492400 chr3D 83.730 252 36 5 6624 6874 305497162 305497409 4.410000e-57 233.0
19 TraesCS2D01G492400 chr3D 86.667 75 6 3 6432 6506 27949912 27949842 6.080000e-11 80.5
20 TraesCS2D01G492400 chr7B 83.333 252 36 6 6624 6872 705488200 705487952 2.050000e-55 228.0
21 TraesCS2D01G492400 chr1A 82.625 259 40 5 6625 6880 539684011 539684267 2.650000e-54 224.0
22 TraesCS2D01G492400 chr6D 81.550 271 45 4 6606 6874 25991436 25991703 1.230000e-52 219.0
23 TraesCS2D01G492400 chr6D 82.677 254 37 6 6624 6874 68074978 68075227 1.230000e-52 219.0
24 TraesCS2D01G492400 chr6D 91.111 135 12 0 7158 7292 153869259 153869393 4.500000e-42 183.0
25 TraesCS2D01G492400 chr6D 88.710 62 5 2 6418 6479 412759770 412759711 2.830000e-09 75.0
26 TraesCS2D01G492400 chr7A 82.171 258 35 11 6623 6874 718287768 718287516 2.070000e-50 211.0
27 TraesCS2D01G492400 chr7A 91.667 60 0 3 6416 6473 501073864 501073920 2.190000e-10 78.7
28 TraesCS2D01G492400 chr4B 91.852 135 11 0 7158 7292 429242064 429241930 9.680000e-44 189.0
29 TraesCS2D01G492400 chr4D 91.111 135 12 0 7158 7292 274467661 274467527 4.500000e-42 183.0
30 TraesCS2D01G492400 chr4D 94.643 56 1 2 6417 6472 379132077 379132024 1.310000e-12 86.1
31 TraesCS2D01G492400 chr1B 91.111 135 12 0 7158 7292 593011474 593011340 4.500000e-42 183.0
32 TraesCS2D01G492400 chr7D 90.370 135 13 0 7158 7292 5492065 5492199 2.100000e-40 178.0
33 TraesCS2D01G492400 chr7D 88.158 152 14 3 7158 7307 89521266 89521117 2.100000e-40 178.0
34 TraesCS2D01G492400 chr3B 90.370 135 13 0 7158 7292 26586732 26586598 2.100000e-40 178.0
35 TraesCS2D01G492400 chr3B 86.957 69 5 4 6420 6488 236508031 236507967 2.830000e-09 75.0
36 TraesCS2D01G492400 chr1D 90.370 135 13 0 7158 7292 50704407 50704541 2.100000e-40 178.0
37 TraesCS2D01G492400 chr6A 94.545 55 2 1 6425 6479 610518786 610518839 4.700000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G492400 chr2D 590156143 590163453 7310 False 13501.000000 13501 100.000000 1 7311 1 chr2D.!!$F2 7310
1 TraesCS2D01G492400 chr2B 714785759 714792753 6994 False 3332.333333 7592 93.134333 12 7030 3 chr2B.!!$F1 7018
2 TraesCS2D01G492400 chr2A 724523533 724530771 7238 False 1150.250000 3725 88.978375 12 7107 8 chr2A.!!$F1 7095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 513 0.179200 GAAAATACAGTGCCGCCACG 60.179 55.000 0.00 0.0 46.62 4.94 F
705 747 0.720590 TGGTAAAATTACGCGCCGTC 59.279 50.000 5.73 0.0 41.54 4.79 F
1423 1782 0.516877 GCCTTTTGCGGATTTTTGGC 59.483 50.000 0.00 0.0 0.00 4.52 F
1675 2042 0.318699 GCGCTGCTGACACGGATATA 60.319 55.000 0.00 0.0 0.00 0.86 F
1677 2044 1.269051 CGCTGCTGACACGGATATACA 60.269 52.381 0.00 0.0 0.00 2.29 F
1679 2046 2.034685 GCTGCTGACACGGATATACAGA 59.965 50.000 0.00 0.0 0.00 3.41 F
3142 3684 2.178912 TGTACTCTCCCCGCAAAAAG 57.821 50.000 0.00 0.0 0.00 2.27 F
4044 4623 0.317479 ACAGTCAGCCGTACACCTTC 59.683 55.000 0.00 0.0 0.00 3.46 F
5506 6113 0.036306 GTCGTCCACCAGGTTCCAAT 59.964 55.000 0.00 0.0 35.89 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1348 1443 0.810031 CGCCCGGTGGATTGAACTAG 60.810 60.000 0.00 0.00 0.00 2.57 R
1597 1963 0.940126 CATTCTATTCCGCTGCGCTT 59.060 50.000 18.00 5.69 0.00 4.68 R
2314 2815 2.105993 TCCCTGCTGGAGATCATGAATG 59.894 50.000 11.88 0.00 38.61 2.67 R
3125 3667 2.370849 ACTTCTTTTTGCGGGGAGAGTA 59.629 45.455 0.00 0.00 0.00 2.59 R
3417 3974 3.782889 AGTGAAGGCTTTCAACAACAC 57.217 42.857 13.42 2.91 44.49 3.32 R
3723 4294 2.038426 TGAGATTTTGAGGAGCGGTTCA 59.962 45.455 0.00 0.00 0.00 3.18 R
4364 4962 0.461548 CATCTGAACTCGGGCTAGCA 59.538 55.000 18.24 0.00 0.00 3.49 R
5570 6177 0.034059 CCCGGTGGATGACTCATAGC 59.966 60.000 0.00 0.00 0.00 2.97 R
7123 7798 0.665835 TTCTGAAATTGGCGTGCGTT 59.334 45.000 0.00 0.00 0.00 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.422303 GCATGCGCCGTGACTTGA 61.422 61.111 4.18 0.00 0.00 3.02
126 127 1.885163 AATGAAGCAAGCTGGCAGCC 61.885 55.000 34.33 20.06 43.77 4.85
232 242 1.328680 CACTTGTAGCGCTTAGGCATG 59.671 52.381 18.68 14.04 38.60 4.06
264 274 2.995939 TGTATCGCAGCTTTCAGAACTG 59.004 45.455 0.00 0.00 34.48 3.16
277 287 3.320626 TCAGAACTGTGAAGATGCTTCG 58.679 45.455 0.00 0.00 0.00 3.79
285 295 2.152013 GAAGATGCTTCGCGGCGATC 62.152 60.000 26.95 19.74 35.23 3.69
370 381 0.798776 CCTCTGTTACCAGCAAAGCG 59.201 55.000 0.00 0.00 38.66 4.68
383 394 2.096819 AGCAAAGCGTTCGAAAGTTGAA 59.903 40.909 15.25 0.00 0.00 2.69
384 395 3.042887 GCAAAGCGTTCGAAAGTTGAAT 58.957 40.909 15.25 0.00 0.00 2.57
385 396 3.121696 GCAAAGCGTTCGAAAGTTGAATG 60.122 43.478 15.25 9.99 35.83 2.67
387 398 4.545823 AAGCGTTCGAAAGTTGAATGAA 57.454 36.364 12.65 0.00 34.92 2.57
388 399 4.545823 AGCGTTCGAAAGTTGAATGAAA 57.454 36.364 12.65 0.00 34.92 2.69
389 400 4.527564 AGCGTTCGAAAGTTGAATGAAAG 58.472 39.130 12.65 0.00 34.92 2.62
390 401 3.664025 GCGTTCGAAAGTTGAATGAAAGG 59.336 43.478 12.65 0.00 34.92 3.11
450 462 2.975851 GCACAAAGTCAGCGAATCAAAG 59.024 45.455 0.00 0.00 0.00 2.77
453 465 3.876914 ACAAAGTCAGCGAATCAAAGTCA 59.123 39.130 0.00 0.00 0.00 3.41
454 466 4.024556 ACAAAGTCAGCGAATCAAAGTCAG 60.025 41.667 0.00 0.00 0.00 3.51
455 467 2.693069 AGTCAGCGAATCAAAGTCAGG 58.307 47.619 0.00 0.00 0.00 3.86
456 468 1.734465 GTCAGCGAATCAAAGTCAGGG 59.266 52.381 0.00 0.00 0.00 4.45
457 469 1.089920 CAGCGAATCAAAGTCAGGGG 58.910 55.000 0.00 0.00 0.00 4.79
497 513 0.179200 GAAAATACAGTGCCGCCACG 60.179 55.000 0.00 0.00 46.62 4.94
530 546 1.000993 AACCCACCCAAACTGTGCA 59.999 52.632 0.00 0.00 32.30 4.57
535 551 1.202405 CCACCCAAACTGTGCACTTTC 60.202 52.381 19.41 0.00 32.30 2.62
545 561 4.329392 ACTGTGCACTTTCATCATCATCA 58.671 39.130 19.41 0.00 0.00 3.07
620 645 2.643933 AACGCTAACCTCCGACTAAC 57.356 50.000 0.00 0.00 0.00 2.34
646 671 5.897050 GCTTCTGTCAAGCAGTATAGTACT 58.103 41.667 0.00 0.00 45.23 2.73
662 687 3.015327 AGTACTGTACGTCTCATGGACC 58.985 50.000 11.97 0.00 41.64 4.46
685 710 4.551702 TGCTCAATCTGCTAACCAACTA 57.448 40.909 0.00 0.00 0.00 2.24
687 712 4.877823 TGCTCAATCTGCTAACCAACTATG 59.122 41.667 0.00 0.00 0.00 2.23
705 747 0.720590 TGGTAAAATTACGCGCCGTC 59.279 50.000 5.73 0.00 41.54 4.79
801 846 1.263217 GCAACCTGGTAACTTCACACG 59.737 52.381 0.00 0.00 37.61 4.49
802 847 2.828877 CAACCTGGTAACTTCACACGA 58.171 47.619 0.00 0.00 37.61 4.35
803 848 3.399330 CAACCTGGTAACTTCACACGAT 58.601 45.455 0.00 0.00 37.61 3.73
817 863 1.837439 ACACGATCTGGCCTGGATTTA 59.163 47.619 10.07 0.00 0.00 1.40
823 869 0.918983 CTGGCCTGGATTTAGGGTCA 59.081 55.000 3.32 0.00 38.32 4.02
866 925 3.942115 TCGGATTAAATCAAATCGTGGCA 59.058 39.130 0.00 0.00 36.84 4.92
875 934 1.421410 AAATCGTGGCAGCGTCGATC 61.421 55.000 18.88 0.00 42.22 3.69
876 935 2.284798 AATCGTGGCAGCGTCGATCT 62.285 55.000 18.88 9.99 42.22 2.75
877 936 2.669808 ATCGTGGCAGCGTCGATCTC 62.670 60.000 14.74 0.00 39.58 2.75
878 937 2.951745 GTGGCAGCGTCGATCTCG 60.952 66.667 0.00 0.00 41.45 4.04
879 938 4.193334 TGGCAGCGTCGATCTCGG 62.193 66.667 0.00 0.00 40.29 4.63
920 979 2.343101 AGCTGCACGCGAACTTATAAA 58.657 42.857 15.93 0.00 45.59 1.40
922 981 2.536928 GCTGCACGCGAACTTATAAAGG 60.537 50.000 15.93 0.00 0.00 3.11
923 982 2.927477 CTGCACGCGAACTTATAAAGGA 59.073 45.455 15.93 0.00 0.00 3.36
924 983 2.927477 TGCACGCGAACTTATAAAGGAG 59.073 45.455 15.93 0.00 0.00 3.69
931 990 6.013689 CGCGAACTTATAAAGGAGAAAACAC 58.986 40.000 0.00 0.00 0.00 3.32
932 991 6.347079 CGCGAACTTATAAAGGAGAAAACACA 60.347 38.462 0.00 0.00 0.00 3.72
976 1036 0.976963 TCGACGCGACGACAAATAAC 59.023 50.000 28.22 0.00 37.37 1.89
1021 1082 4.722700 ACGCCAGCCACCACATCC 62.723 66.667 0.00 0.00 0.00 3.51
1025 1086 2.605607 CCAGCCACCACATCCTCCA 61.606 63.158 0.00 0.00 0.00 3.86
1035 1107 4.095400 ATCCTCCACCCCGCCTCT 62.095 66.667 0.00 0.00 0.00 3.69
1054 1126 3.391382 CACCACCTCCCGTCTCCC 61.391 72.222 0.00 0.00 0.00 4.30
1153 1241 4.698625 AGCCCTCCCGTCCGTTCT 62.699 66.667 0.00 0.00 0.00 3.01
1168 1256 2.351244 TTCTGTCGATCGCCCTGCT 61.351 57.895 11.09 0.00 0.00 4.24
1336 1431 2.021457 GTACTGCCACCAACAAACACT 58.979 47.619 0.00 0.00 0.00 3.55
1344 1439 4.740334 GCCACCAACAAACACTTGATGATT 60.740 41.667 0.00 0.00 37.48 2.57
1348 1443 6.857964 CACCAACAAACACTTGATGATTCTAC 59.142 38.462 0.00 0.00 37.48 2.59
1350 1445 7.936847 ACCAACAAACACTTGATGATTCTACTA 59.063 33.333 0.00 0.00 37.48 1.82
1351 1446 8.446273 CCAACAAACACTTGATGATTCTACTAG 58.554 37.037 0.00 0.00 37.48 2.57
1352 1447 8.993121 CAACAAACACTTGATGATTCTACTAGT 58.007 33.333 0.00 0.00 37.48 2.57
1353 1448 9.561069 AACAAACACTTGATGATTCTACTAGTT 57.439 29.630 0.00 0.00 36.33 2.24
1354 1449 9.209175 ACAAACACTTGATGATTCTACTAGTTC 57.791 33.333 0.00 0.00 36.33 3.01
1355 1450 9.208022 CAAACACTTGATGATTCTACTAGTTCA 57.792 33.333 0.00 0.00 34.14 3.18
1356 1451 9.778741 AAACACTTGATGATTCTACTAGTTCAA 57.221 29.630 0.00 2.10 0.00 2.69
1357 1452 9.950496 AACACTTGATGATTCTACTAGTTCAAT 57.050 29.630 0.00 0.00 0.00 2.57
1358 1453 9.593134 ACACTTGATGATTCTACTAGTTCAATC 57.407 33.333 0.00 9.80 0.00 2.67
1359 1454 9.039870 CACTTGATGATTCTACTAGTTCAATCC 57.960 37.037 17.59 8.67 0.00 3.01
1360 1455 8.762645 ACTTGATGATTCTACTAGTTCAATCCA 58.237 33.333 17.59 10.38 0.00 3.41
1363 1458 5.902681 TGATTCTACTAGTTCAATCCACCG 58.097 41.667 17.59 0.00 0.00 4.94
1364 1459 4.730949 TTCTACTAGTTCAATCCACCGG 57.269 45.455 0.00 0.00 0.00 5.28
1367 1708 0.810031 CTAGTTCAATCCACCGGGCG 60.810 60.000 6.32 0.00 0.00 6.13
1389 1730 3.255379 GACACGGATTCGCGCTCC 61.255 66.667 15.25 15.25 40.63 4.70
1395 1754 2.586357 GATTCGCGCTCCAGGACC 60.586 66.667 5.56 0.00 0.00 4.46
1408 1767 4.368543 GGACCCGTTCGTCGCCTT 62.369 66.667 0.00 0.00 38.35 4.35
1423 1782 0.516877 GCCTTTTGCGGATTTTTGGC 59.483 50.000 0.00 0.00 0.00 4.52
1427 1786 2.898729 TTTGCGGATTTTTGGCTTGA 57.101 40.000 0.00 0.00 0.00 3.02
1431 1790 1.394572 GCGGATTTTTGGCTTGATTGC 59.605 47.619 0.00 0.00 0.00 3.56
1432 1791 1.655099 CGGATTTTTGGCTTGATTGCG 59.345 47.619 0.00 0.00 0.00 4.85
1434 1793 2.412770 GGATTTTTGGCTTGATTGCGTG 59.587 45.455 0.00 0.00 0.00 5.34
1436 1795 0.938637 TTTTGGCTTGATTGCGTGCG 60.939 50.000 0.00 0.00 0.00 5.34
1439 1798 2.555782 GCTTGATTGCGTGCGTCA 59.444 55.556 0.00 0.00 0.00 4.35
1440 1799 1.793613 GCTTGATTGCGTGCGTCAC 60.794 57.895 0.05 0.58 0.00 3.67
1451 1810 1.394697 GTGCGTCACGATTTGTTTGG 58.605 50.000 0.00 0.00 0.00 3.28
1472 1831 5.879237 TGGCGAATGATTTAATCTGTTGTC 58.121 37.500 6.50 0.88 0.00 3.18
1478 1837 3.991121 TGATTTAATCTGTTGTCGCGTGA 59.009 39.130 5.77 0.00 0.00 4.35
1498 1859 3.057245 TGAGATACGATCCTGCTGTATGC 60.057 47.826 0.00 0.00 43.25 3.14
1499 1860 3.161067 AGATACGATCCTGCTGTATGCT 58.839 45.455 0.00 0.00 43.37 3.79
1501 1862 2.698855 ACGATCCTGCTGTATGCTTT 57.301 45.000 0.00 0.00 43.37 3.51
1502 1863 2.991250 ACGATCCTGCTGTATGCTTTT 58.009 42.857 0.00 0.00 43.37 2.27
1503 1864 2.679837 ACGATCCTGCTGTATGCTTTTG 59.320 45.455 0.00 0.00 43.37 2.44
1504 1865 2.679837 CGATCCTGCTGTATGCTTTTGT 59.320 45.455 0.00 0.00 43.37 2.83
1546 1907 2.279120 GCGAGATGCGTGGAGGAG 60.279 66.667 0.00 0.00 43.41 3.69
1548 1909 2.780094 CGAGATGCGTGGAGGAGCT 61.780 63.158 0.00 0.00 40.46 4.09
1549 1910 1.227205 GAGATGCGTGGAGGAGCTG 60.227 63.158 0.00 0.00 36.94 4.24
1550 1911 1.954362 GAGATGCGTGGAGGAGCTGT 61.954 60.000 0.00 0.00 36.94 4.40
1588 1954 2.066262 ACGACGCATCTAGGTTTTGTG 58.934 47.619 0.00 0.00 0.00 3.33
1589 1955 2.066262 CGACGCATCTAGGTTTTGTGT 58.934 47.619 0.00 0.00 36.84 3.72
1595 1961 4.271049 CGCATCTAGGTTTTGTGTATCCAG 59.729 45.833 0.00 0.00 0.00 3.86
1597 1963 6.346096 GCATCTAGGTTTTGTGTATCCAGTA 58.654 40.000 0.00 0.00 0.00 2.74
1673 2040 2.202743 GCGCTGCTGACACGGATA 60.203 61.111 0.00 0.00 0.00 2.59
1674 2041 1.592669 GCGCTGCTGACACGGATAT 60.593 57.895 0.00 0.00 0.00 1.63
1675 2042 0.318699 GCGCTGCTGACACGGATATA 60.319 55.000 0.00 0.00 0.00 0.86
1676 2043 1.409412 CGCTGCTGACACGGATATAC 58.591 55.000 0.00 0.00 0.00 1.47
1677 2044 1.269051 CGCTGCTGACACGGATATACA 60.269 52.381 0.00 0.00 0.00 2.29
1678 2045 2.398498 GCTGCTGACACGGATATACAG 58.602 52.381 0.00 0.00 0.00 2.74
1679 2046 2.034685 GCTGCTGACACGGATATACAGA 59.965 50.000 0.00 0.00 0.00 3.41
1680 2047 3.305676 GCTGCTGACACGGATATACAGAT 60.306 47.826 0.00 0.00 0.00 2.90
1681 2048 4.233005 CTGCTGACACGGATATACAGATG 58.767 47.826 0.00 0.00 0.00 2.90
1683 2050 3.305676 GCTGACACGGATATACAGATGCT 60.306 47.826 0.00 0.00 0.00 3.79
1684 2051 4.480541 CTGACACGGATATACAGATGCTC 58.519 47.826 0.00 0.00 0.00 4.26
1685 2052 3.888930 TGACACGGATATACAGATGCTCA 59.111 43.478 0.00 0.00 0.00 4.26
1686 2053 4.524328 TGACACGGATATACAGATGCTCAT 59.476 41.667 0.00 0.00 0.00 2.90
1687 2054 5.710099 TGACACGGATATACAGATGCTCATA 59.290 40.000 0.00 0.00 0.00 2.15
1688 2055 6.127897 TGACACGGATATACAGATGCTCATAG 60.128 42.308 0.00 0.00 0.00 2.23
1689 2056 5.039984 CACGGATATACAGATGCTCATAGC 58.960 45.833 0.00 0.00 42.82 2.97
2006 2484 8.089597 TGTGGTTAACGAGTAGTTGATTGATTA 58.910 33.333 0.00 0.00 44.01 1.75
2009 2487 9.750882 GGTTAACGAGTAGTTGATTGATTAAAC 57.249 33.333 0.00 0.00 44.01 2.01
2067 2545 8.949177 CAATGCCAACATATATCAAGCAGTATA 58.051 33.333 0.00 0.00 34.62 1.47
2204 2682 4.997395 AGCCTGTTCAAACTACAGTGTATG 59.003 41.667 2.82 0.00 41.08 2.39
2210 2688 6.937465 TGTTCAAACTACAGTGTATGCCATAA 59.063 34.615 2.82 0.00 0.00 1.90
2314 2815 7.148086 TGGCTGACAATCATTTCATAGTTTACC 60.148 37.037 0.00 0.00 0.00 2.85
2361 2862 5.473066 AAGCCTTGAGTAAACATTGCAAT 57.527 34.783 5.99 5.99 0.00 3.56
2366 2868 7.041848 AGCCTTGAGTAAACATTGCAATTTTTC 60.042 33.333 23.13 16.54 0.00 2.29
2444 2967 8.777413 TCATGCTTCACTTCTACATAATAATGC 58.223 33.333 0.00 0.00 36.50 3.56
2445 2968 7.496529 TGCTTCACTTCTACATAATAATGCC 57.503 36.000 0.00 0.00 36.50 4.40
2446 2969 7.053498 TGCTTCACTTCTACATAATAATGCCA 58.947 34.615 0.00 0.00 36.50 4.92
2447 2970 7.227314 TGCTTCACTTCTACATAATAATGCCAG 59.773 37.037 0.00 0.00 36.50 4.85
2448 2971 7.227512 GCTTCACTTCTACATAATAATGCCAGT 59.772 37.037 0.00 0.00 36.50 4.00
2449 2972 9.113838 CTTCACTTCTACATAATAATGCCAGTT 57.886 33.333 0.00 0.00 36.50 3.16
2450 2973 8.662781 TCACTTCTACATAATAATGCCAGTTC 57.337 34.615 0.00 0.00 36.50 3.01
2451 2974 8.264347 TCACTTCTACATAATAATGCCAGTTCA 58.736 33.333 0.00 0.00 36.50 3.18
2452 2975 9.060347 CACTTCTACATAATAATGCCAGTTCAT 57.940 33.333 0.00 0.00 36.50 2.57
2453 2976 9.277783 ACTTCTACATAATAATGCCAGTTCATC 57.722 33.333 0.00 0.00 36.50 2.92
2454 2977 9.276590 CTTCTACATAATAATGCCAGTTCATCA 57.723 33.333 0.00 0.00 36.50 3.07
2455 2978 9.625747 TTCTACATAATAATGCCAGTTCATCAA 57.374 29.630 0.00 0.00 36.50 2.57
2456 2979 9.625747 TCTACATAATAATGCCAGTTCATCAAA 57.374 29.630 0.00 0.00 36.50 2.69
2616 3143 4.141711 TGTTCTGGAGGACTGGTAATATGC 60.142 45.833 0.00 0.00 0.00 3.14
2673 3202 7.531857 TGCAGAAAACAAAAGATATGGGTAA 57.468 32.000 0.00 0.00 0.00 2.85
2692 3221 6.544564 TGGGTAAATGCAGCCTATAGTAAAAC 59.455 38.462 0.00 0.00 36.99 2.43
2776 3305 5.130477 TCACTAGGTTCTCCTGTTTTCTGTT 59.870 40.000 0.00 0.00 44.81 3.16
2785 3314 6.110707 TCTCCTGTTTTCTGTTAAAGAACGT 58.889 36.000 0.00 0.00 44.77 3.99
3054 3596 5.484998 ACCATCCCTAAGTGATTGCATTTTT 59.515 36.000 0.00 0.00 0.00 1.94
3070 3612 7.593875 TGCATTTTTATATCTGCAAAACCAC 57.406 32.000 0.00 0.00 41.33 4.16
3125 3667 9.337396 TGATTATTGTCTTGTCAGTTACTTTGT 57.663 29.630 0.00 0.00 0.00 2.83
3142 3684 2.178912 TGTACTCTCCCCGCAAAAAG 57.821 50.000 0.00 0.00 0.00 2.27
3270 3818 4.560739 AGTCATTGACTCCCTGGATCATA 58.439 43.478 13.61 0.00 38.71 2.15
3503 4060 7.122055 TCCATATAAAAATCTCAAGCGGTTGTT 59.878 33.333 25.18 14.17 34.98 2.83
3615 4184 8.578308 TTGATTGAGCTACATTTCTTTTGTTG 57.422 30.769 0.00 0.00 0.00 3.33
3723 4294 8.322091 AGGTCTAAACTGCACTAATATTTCACT 58.678 33.333 0.00 0.00 0.00 3.41
3790 4361 6.546484 AGTGCCCTGATTGTGCTAATATTAT 58.454 36.000 0.00 0.00 0.00 1.28
3909 4483 7.443302 AAATCATCTCTCTTACCTGATTCCA 57.557 36.000 0.00 0.00 35.96 3.53
4033 4612 9.712305 ATATTGTTAGTTGGATATACAGTCAGC 57.288 33.333 0.00 0.00 0.00 4.26
4044 4623 0.317479 ACAGTCAGCCGTACACCTTC 59.683 55.000 0.00 0.00 0.00 3.46
4045 4624 0.603569 CAGTCAGCCGTACACCTTCT 59.396 55.000 0.00 0.00 0.00 2.85
4046 4625 1.000955 CAGTCAGCCGTACACCTTCTT 59.999 52.381 0.00 0.00 0.00 2.52
4050 4632 1.447314 GCCGTACACCTTCTTCCCG 60.447 63.158 0.00 0.00 0.00 5.14
4087 4669 7.440505 TTTTATGGGTAGTGCTATAGGTTCA 57.559 36.000 1.04 0.00 0.00 3.18
4088 4670 7.440505 TTTATGGGTAGTGCTATAGGTTCAA 57.559 36.000 1.04 0.00 0.00 2.69
4089 4671 5.552870 ATGGGTAGTGCTATAGGTTCAAG 57.447 43.478 1.04 0.00 0.00 3.02
4094 4676 4.207891 AGTGCTATAGGTTCAAGGTGTG 57.792 45.455 1.04 0.00 0.00 3.82
4095 4677 2.678336 GTGCTATAGGTTCAAGGTGTGC 59.322 50.000 1.04 0.00 0.00 4.57
4096 4678 2.571653 TGCTATAGGTTCAAGGTGTGCT 59.428 45.455 1.04 0.00 0.00 4.40
4098 4680 4.010349 GCTATAGGTTCAAGGTGTGCTTT 58.990 43.478 1.04 0.00 0.00 3.51
4189 4783 0.666274 CCGAACGCAGTGAGTTAGCA 60.666 55.000 12.50 0.00 45.00 3.49
4199 4793 6.183360 ACGCAGTGAGTTAGCATAGATTTTTC 60.183 38.462 0.00 0.00 42.51 2.29
4319 4917 4.080638 CCTTCTCAAGCTGGATTAAGACCT 60.081 45.833 12.77 0.00 0.00 3.85
4419 5017 1.405105 GTTTTGAGTCACTGCAGCCAA 59.595 47.619 15.27 7.73 0.00 4.52
4715 5313 7.564793 TCCAAAGTAAGCAAGCTTCTCATATA 58.435 34.615 11.05 0.00 37.47 0.86
4813 5411 4.543590 TTCTCCTGATGTGAAAGACTCC 57.456 45.455 0.00 0.00 0.00 3.85
4926 5524 5.067273 TCAACCAAACGATTACCATCAGTT 58.933 37.500 0.00 0.00 31.58 3.16
4956 5554 0.462789 GGCCCTGCAGAAATCAATGG 59.537 55.000 17.39 6.12 0.00 3.16
5210 5808 2.092103 AGTAGTTCTGTTGTTGCCCCAA 60.092 45.455 0.00 0.00 0.00 4.12
5309 5907 0.251787 AAATTCCACCCTGCCACCTC 60.252 55.000 0.00 0.00 0.00 3.85
5310 5908 2.155197 AATTCCACCCTGCCACCTCC 62.155 60.000 0.00 0.00 0.00 4.30
5311 5909 4.590553 TCCACCCTGCCACCTCCA 62.591 66.667 0.00 0.00 0.00 3.86
5312 5910 3.341629 CCACCCTGCCACCTCCAT 61.342 66.667 0.00 0.00 0.00 3.41
5313 5911 2.273449 CACCCTGCCACCTCCATC 59.727 66.667 0.00 0.00 0.00 3.51
5314 5912 2.204136 ACCCTGCCACCTCCATCA 60.204 61.111 0.00 0.00 0.00 3.07
5328 5926 1.000739 CATCACCAATGGCCCCACT 59.999 57.895 0.00 0.00 0.00 4.00
5427 6034 0.107703 CTTCCACCGGCAGCTATGAA 60.108 55.000 0.00 0.00 0.00 2.57
5490 6097 3.871594 GGTTCAAATCCACCTATGAGTCG 59.128 47.826 0.00 0.00 0.00 4.18
5491 6098 4.504858 GTTCAAATCCACCTATGAGTCGT 58.495 43.478 0.00 0.00 0.00 4.34
5492 6099 4.386867 TCAAATCCACCTATGAGTCGTC 57.613 45.455 0.00 0.00 0.00 4.20
5493 6100 3.132289 TCAAATCCACCTATGAGTCGTCC 59.868 47.826 0.00 0.00 0.00 4.79
5494 6101 2.454336 ATCCACCTATGAGTCGTCCA 57.546 50.000 0.00 0.00 0.00 4.02
5495 6102 1.471119 TCCACCTATGAGTCGTCCAC 58.529 55.000 0.00 0.00 0.00 4.02
5496 6103 0.460311 CCACCTATGAGTCGTCCACC 59.540 60.000 0.00 0.00 0.00 4.61
5497 6104 1.182667 CACCTATGAGTCGTCCACCA 58.817 55.000 0.00 0.00 0.00 4.17
5498 6105 1.135139 CACCTATGAGTCGTCCACCAG 59.865 57.143 0.00 0.00 0.00 4.00
5499 6106 0.747255 CCTATGAGTCGTCCACCAGG 59.253 60.000 0.00 0.00 0.00 4.45
5500 6107 1.475403 CTATGAGTCGTCCACCAGGT 58.525 55.000 0.00 0.00 35.89 4.00
5501 6108 1.825474 CTATGAGTCGTCCACCAGGTT 59.175 52.381 0.00 0.00 35.89 3.50
5502 6109 0.608640 ATGAGTCGTCCACCAGGTTC 59.391 55.000 0.00 0.00 35.89 3.62
5503 6110 1.292541 GAGTCGTCCACCAGGTTCC 59.707 63.158 0.00 0.00 35.89 3.62
5504 6111 1.458777 AGTCGTCCACCAGGTTCCA 60.459 57.895 0.00 0.00 35.89 3.53
5505 6112 1.052124 AGTCGTCCACCAGGTTCCAA 61.052 55.000 0.00 0.00 35.89 3.53
5506 6113 0.036306 GTCGTCCACCAGGTTCCAAT 59.964 55.000 0.00 0.00 35.89 3.16
5507 6114 0.323629 TCGTCCACCAGGTTCCAATC 59.676 55.000 0.00 0.00 35.89 2.67
5508 6115 0.676782 CGTCCACCAGGTTCCAATCC 60.677 60.000 0.00 0.00 35.89 3.01
5509 6116 0.404040 GTCCACCAGGTTCCAATCCA 59.596 55.000 0.00 0.00 35.89 3.41
5510 6117 0.404040 TCCACCAGGTTCCAATCCAC 59.596 55.000 0.00 0.00 35.89 4.02
5511 6118 0.611896 CCACCAGGTTCCAATCCACC 60.612 60.000 0.00 0.00 0.00 4.61
5512 6119 0.405585 CACCAGGTTCCAATCCACCT 59.594 55.000 0.00 0.00 44.88 4.00
5513 6120 1.633432 CACCAGGTTCCAATCCACCTA 59.367 52.381 0.00 0.00 41.86 3.08
5514 6121 2.242196 CACCAGGTTCCAATCCACCTAT 59.758 50.000 0.00 0.00 41.86 2.57
5515 6122 2.242196 ACCAGGTTCCAATCCACCTATG 59.758 50.000 0.00 0.00 41.86 2.23
5516 6123 2.509548 CCAGGTTCCAATCCACCTATGA 59.490 50.000 0.00 0.00 41.86 2.15
5517 6124 3.434167 CCAGGTTCCAATCCACCTATGAG 60.434 52.174 0.00 0.00 41.86 2.90
5518 6125 3.200825 CAGGTTCCAATCCACCTATGAGT 59.799 47.826 0.00 0.00 41.86 3.41
5519 6126 3.456277 AGGTTCCAATCCACCTATGAGTC 59.544 47.826 0.00 0.00 41.97 3.36
5520 6127 3.458189 GTTCCAATCCACCTATGAGTCG 58.542 50.000 0.00 0.00 0.00 4.18
5556 6163 0.460311 CCACCTATGAGTCGTCCACC 59.540 60.000 0.00 0.00 0.00 4.61
5557 6164 0.100682 CACCTATGAGTCGTCCACCG 59.899 60.000 0.00 0.00 38.13 4.94
5558 6165 1.035932 ACCTATGAGTCGTCCACCGG 61.036 60.000 0.00 0.00 37.11 5.28
5559 6166 1.734137 CTATGAGTCGTCCACCGGG 59.266 63.158 6.32 0.00 37.11 5.73
5560 6167 1.735376 CTATGAGTCGTCCACCGGGG 61.735 65.000 6.32 0.00 37.11 5.73
5561 6168 2.503846 TATGAGTCGTCCACCGGGGT 62.504 60.000 6.32 0.00 38.11 4.95
5562 6169 3.756727 GAGTCGTCCACCGGGGTC 61.757 72.222 6.32 0.95 38.11 4.46
5563 6170 4.608774 AGTCGTCCACCGGGGTCA 62.609 66.667 6.32 0.00 38.11 4.02
5564 6171 3.618750 GTCGTCCACCGGGGTCAA 61.619 66.667 6.32 0.00 38.11 3.18
5565 6172 2.843411 TCGTCCACCGGGGTCAAA 60.843 61.111 6.32 0.00 38.11 2.69
5566 6173 2.218454 TCGTCCACCGGGGTCAAAT 61.218 57.895 6.32 0.00 38.11 2.32
5567 6174 1.743995 CGTCCACCGGGGTCAAATC 60.744 63.158 6.32 0.00 38.11 2.17
5568 6175 1.378119 GTCCACCGGGGTCAAATCC 60.378 63.158 6.32 0.00 38.11 3.01
5569 6176 1.848431 TCCACCGGGGTCAAATCCA 60.848 57.895 6.32 0.00 38.11 3.41
5570 6177 1.378514 CCACCGGGGTCAAATCCAG 60.379 63.158 6.32 0.00 0.00 3.86
5571 6178 2.046285 CACCGGGGTCAAATCCAGC 61.046 63.158 6.32 0.00 0.00 4.85
5572 6179 2.231380 ACCGGGGTCAAATCCAGCT 61.231 57.895 6.32 0.00 0.00 4.24
5573 6180 0.912487 ACCGGGGTCAAATCCAGCTA 60.912 55.000 6.32 0.00 0.00 3.32
5574 6181 0.474184 CCGGGGTCAAATCCAGCTAT 59.526 55.000 0.00 0.00 0.00 2.97
5575 6182 1.597742 CGGGGTCAAATCCAGCTATG 58.402 55.000 0.00 0.00 0.00 2.23
5576 6183 1.140852 CGGGGTCAAATCCAGCTATGA 59.859 52.381 0.00 0.00 0.00 2.15
5577 6184 2.808202 CGGGGTCAAATCCAGCTATGAG 60.808 54.545 0.00 0.00 0.00 2.90
5578 6185 2.173569 GGGGTCAAATCCAGCTATGAGT 59.826 50.000 0.00 0.00 0.00 3.41
5579 6186 3.471680 GGGTCAAATCCAGCTATGAGTC 58.528 50.000 0.00 0.00 0.00 3.36
5580 6187 3.118261 GGGTCAAATCCAGCTATGAGTCA 60.118 47.826 0.00 0.00 0.00 3.41
5581 6188 4.445448 GGGTCAAATCCAGCTATGAGTCAT 60.445 45.833 11.12 11.12 0.00 3.06
5582 6189 4.754114 GGTCAAATCCAGCTATGAGTCATC 59.246 45.833 9.42 0.00 0.00 2.92
5583 6190 4.754114 GTCAAATCCAGCTATGAGTCATCC 59.246 45.833 9.42 2.19 0.00 3.51
5584 6191 4.409901 TCAAATCCAGCTATGAGTCATCCA 59.590 41.667 9.42 0.00 0.00 3.41
5585 6192 4.348863 AATCCAGCTATGAGTCATCCAC 57.651 45.455 9.42 0.27 0.00 4.02
5746 6413 6.605995 GGGCTATCAACTATTACAAAACCCTT 59.394 38.462 0.00 0.00 0.00 3.95
5823 6490 6.151648 CAGTTTGGAATGTACCATCAATCTGT 59.848 38.462 12.86 0.00 39.82 3.41
6001 6668 1.602888 AAGGCAGCAGGAGCAACAG 60.603 57.895 0.00 0.00 45.49 3.16
6058 6725 2.851195 ACTGGTCGAAATTGAGCTGTT 58.149 42.857 0.00 0.00 43.16 3.16
6127 6794 7.030075 TCACATGCATGGTTCAGTAAATATG 57.970 36.000 29.41 14.02 0.00 1.78
6128 6795 6.602803 TCACATGCATGGTTCAGTAAATATGT 59.397 34.615 29.41 1.98 0.00 2.29
6418 7089 9.995003 TTTCTTACGGGACAGTTTTAACTTATA 57.005 29.630 0.00 0.00 37.08 0.98
6441 7112 8.904099 ATATGAAAACTTAATTACTCCCTCCG 57.096 34.615 0.00 0.00 0.00 4.63
6442 7113 6.117975 TGAAAACTTAATTACTCCCTCCGT 57.882 37.500 0.00 0.00 0.00 4.69
6443 7114 6.168389 TGAAAACTTAATTACTCCCTCCGTC 58.832 40.000 0.00 0.00 0.00 4.79
6444 7115 4.750021 AACTTAATTACTCCCTCCGTCC 57.250 45.455 0.00 0.00 0.00 4.79
6445 7116 3.036819 ACTTAATTACTCCCTCCGTCCC 58.963 50.000 0.00 0.00 0.00 4.46
6446 7117 2.852714 TAATTACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
6447 7118 2.191981 AATTACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
6448 7119 3.339713 AATTACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
6449 7120 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
6450 7121 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
6451 7122 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
6452 7123 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
6453 7124 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
6454 7125 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
6455 7126 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
6456 7127 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
6457 7128 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
6458 7129 5.024118 CCCTCCGTCCCATAATATAAGAGT 58.976 45.833 0.00 0.00 0.00 3.24
6459 7130 5.105310 CCCTCCGTCCCATAATATAAGAGTG 60.105 48.000 0.00 0.00 0.00 3.51
6460 7131 5.480772 CCTCCGTCCCATAATATAAGAGTGT 59.519 44.000 0.00 0.00 0.00 3.55
6461 7132 6.014499 CCTCCGTCCCATAATATAAGAGTGTT 60.014 42.308 0.00 0.00 0.00 3.32
6462 7133 7.369551 TCCGTCCCATAATATAAGAGTGTTT 57.630 36.000 0.00 0.00 0.00 2.83
6463 7134 7.798071 TCCGTCCCATAATATAAGAGTGTTTT 58.202 34.615 0.00 0.00 0.00 2.43
6464 7135 8.269317 TCCGTCCCATAATATAAGAGTGTTTTT 58.731 33.333 0.00 0.00 0.00 1.94
6465 7136 8.342634 CCGTCCCATAATATAAGAGTGTTTTTG 58.657 37.037 0.00 0.00 0.00 2.44
6466 7137 9.104965 CGTCCCATAATATAAGAGTGTTTTTGA 57.895 33.333 0.00 0.00 0.00 2.69
6468 7139 9.967451 TCCCATAATATAAGAGTGTTTTTGACA 57.033 29.630 0.00 0.00 35.42 3.58
6524 7195 9.383519 TGATAATTGCTTACTTCAAGGAACTAG 57.616 33.333 0.00 0.00 45.94 2.57
6612 7283 7.126268 TCTCCTGTGCCATAATATAGTGCATAT 59.874 37.037 0.00 0.00 34.04 1.78
6887 7558 8.383175 ACAGGAGGAAGTAGATATTTTGTGAAA 58.617 33.333 0.00 0.00 0.00 2.69
7069 7744 9.424319 AGACGAAACTATAATGGTAATATGCAG 57.576 33.333 0.00 0.00 0.00 4.41
7081 7756 3.899052 AATATGCAGCATGTTTTGGCT 57.101 38.095 18.81 0.00 42.06 4.75
7107 7782 6.151817 GGAAGAAAGTAAATCATGTTCTGGCT 59.848 38.462 0.00 0.00 0.00 4.75
7108 7783 6.749923 AGAAAGTAAATCATGTTCTGGCTC 57.250 37.500 0.00 0.00 0.00 4.70
7109 7784 6.240894 AGAAAGTAAATCATGTTCTGGCTCA 58.759 36.000 0.00 0.00 0.00 4.26
7110 7785 6.716628 AGAAAGTAAATCATGTTCTGGCTCAA 59.283 34.615 0.00 0.00 0.00 3.02
7111 7786 6.899393 AAGTAAATCATGTTCTGGCTCAAA 57.101 33.333 0.00 0.00 0.00 2.69
7112 7787 6.506500 AGTAAATCATGTTCTGGCTCAAAG 57.493 37.500 0.00 0.00 0.00 2.77
7113 7788 6.240894 AGTAAATCATGTTCTGGCTCAAAGA 58.759 36.000 0.00 0.00 0.00 2.52
7114 7789 6.716628 AGTAAATCATGTTCTGGCTCAAAGAA 59.283 34.615 0.00 0.00 0.00 2.52
7115 7790 6.409524 AAATCATGTTCTGGCTCAAAGAAA 57.590 33.333 0.00 0.00 35.50 2.52
7116 7791 6.409524 AATCATGTTCTGGCTCAAAGAAAA 57.590 33.333 0.00 0.00 35.50 2.29
7117 7792 6.600882 ATCATGTTCTGGCTCAAAGAAAAT 57.399 33.333 0.00 0.00 35.50 1.82
7118 7793 7.707624 ATCATGTTCTGGCTCAAAGAAAATA 57.292 32.000 0.00 0.00 35.50 1.40
7119 7794 6.913170 TCATGTTCTGGCTCAAAGAAAATAC 58.087 36.000 0.00 0.00 35.50 1.89
7120 7795 6.716628 TCATGTTCTGGCTCAAAGAAAATACT 59.283 34.615 0.00 0.00 35.50 2.12
7121 7796 7.882791 TCATGTTCTGGCTCAAAGAAAATACTA 59.117 33.333 0.00 0.00 35.50 1.82
7122 7797 8.680903 CATGTTCTGGCTCAAAGAAAATACTAT 58.319 33.333 0.00 0.00 35.50 2.12
7123 7798 9.905713 ATGTTCTGGCTCAAAGAAAATACTATA 57.094 29.630 0.00 0.00 35.50 1.31
7124 7799 9.733556 TGTTCTGGCTCAAAGAAAATACTATAA 57.266 29.630 0.00 0.00 35.50 0.98
7125 7800 9.989869 GTTCTGGCTCAAAGAAAATACTATAAC 57.010 33.333 0.00 0.00 35.50 1.89
7126 7801 8.420374 TCTGGCTCAAAGAAAATACTATAACG 57.580 34.615 0.00 0.00 0.00 3.18
7127 7802 7.011109 TCTGGCTCAAAGAAAATACTATAACGC 59.989 37.037 0.00 0.00 0.00 4.84
7128 7803 6.596106 TGGCTCAAAGAAAATACTATAACGCA 59.404 34.615 0.00 0.00 0.00 5.24
7129 7804 6.905609 GGCTCAAAGAAAATACTATAACGCAC 59.094 38.462 0.00 0.00 0.00 5.34
7130 7805 6.623743 GCTCAAAGAAAATACTATAACGCACG 59.376 38.462 0.00 0.00 0.00 5.34
7131 7806 6.471839 TCAAAGAAAATACTATAACGCACGC 58.528 36.000 0.00 0.00 0.00 5.34
7132 7807 5.399604 AAGAAAATACTATAACGCACGCC 57.600 39.130 0.00 0.00 0.00 5.68
7133 7808 4.435425 AGAAAATACTATAACGCACGCCA 58.565 39.130 0.00 0.00 0.00 5.69
7134 7809 4.871557 AGAAAATACTATAACGCACGCCAA 59.128 37.500 0.00 0.00 0.00 4.52
7135 7810 5.526111 AGAAAATACTATAACGCACGCCAAT 59.474 36.000 0.00 0.00 0.00 3.16
7136 7811 5.744666 AAATACTATAACGCACGCCAATT 57.255 34.783 0.00 0.00 0.00 2.32
7137 7812 5.744666 AATACTATAACGCACGCCAATTT 57.255 34.783 0.00 0.00 0.00 1.82
7138 7813 3.668596 ACTATAACGCACGCCAATTTC 57.331 42.857 0.00 0.00 0.00 2.17
7139 7814 3.004171 ACTATAACGCACGCCAATTTCA 58.996 40.909 0.00 0.00 0.00 2.69
7140 7815 2.542766 ATAACGCACGCCAATTTCAG 57.457 45.000 0.00 0.00 0.00 3.02
7141 7816 1.514003 TAACGCACGCCAATTTCAGA 58.486 45.000 0.00 0.00 0.00 3.27
7142 7817 0.665835 AACGCACGCCAATTTCAGAA 59.334 45.000 0.00 0.00 0.00 3.02
7143 7818 0.665835 ACGCACGCCAATTTCAGAAA 59.334 45.000 0.00 0.00 0.00 2.52
7144 7819 1.269448 ACGCACGCCAATTTCAGAAAT 59.731 42.857 2.20 2.20 0.00 2.17
7145 7820 2.486203 ACGCACGCCAATTTCAGAAATA 59.514 40.909 8.88 0.00 0.00 1.40
7146 7821 3.128589 ACGCACGCCAATTTCAGAAATAT 59.871 39.130 8.88 0.00 0.00 1.28
7147 7822 3.483196 CGCACGCCAATTTCAGAAATATG 59.517 43.478 8.88 9.22 0.00 1.78
7148 7823 4.423732 GCACGCCAATTTCAGAAATATGT 58.576 39.130 8.88 3.21 0.00 2.29
7149 7824 5.577835 GCACGCCAATTTCAGAAATATGTA 58.422 37.500 8.88 0.00 0.00 2.29
7150 7825 6.208644 GCACGCCAATTTCAGAAATATGTAT 58.791 36.000 8.88 0.00 0.00 2.29
7151 7826 7.359595 GCACGCCAATTTCAGAAATATGTATA 58.640 34.615 8.88 0.00 0.00 1.47
7152 7827 7.323656 GCACGCCAATTTCAGAAATATGTATAC 59.676 37.037 8.88 0.00 0.00 1.47
7153 7828 8.559536 CACGCCAATTTCAGAAATATGTATACT 58.440 33.333 8.88 0.00 0.00 2.12
7154 7829 9.772973 ACGCCAATTTCAGAAATATGTATACTA 57.227 29.630 8.88 0.00 0.00 1.82
7199 7874 5.880332 TCCAACAAGGAACTACATATGAAGC 59.120 40.000 10.38 0.00 45.65 3.86
7200 7875 5.647658 CCAACAAGGAACTACATATGAAGCA 59.352 40.000 10.38 0.00 38.49 3.91
7201 7876 6.150976 CCAACAAGGAACTACATATGAAGCAA 59.849 38.462 10.38 0.00 38.49 3.91
7202 7877 7.309133 CCAACAAGGAACTACATATGAAGCAAA 60.309 37.037 10.38 0.00 38.49 3.68
7203 7878 7.759489 ACAAGGAACTACATATGAAGCAAAA 57.241 32.000 10.38 0.00 38.49 2.44
7204 7879 8.353423 ACAAGGAACTACATATGAAGCAAAAT 57.647 30.769 10.38 0.00 38.49 1.82
7205 7880 9.461312 ACAAGGAACTACATATGAAGCAAAATA 57.539 29.630 10.38 0.00 38.49 1.40
7208 7883 9.686683 AGGAACTACATATGAAGCAAAATAAGT 57.313 29.630 10.38 0.00 36.02 2.24
7209 7884 9.722056 GGAACTACATATGAAGCAAAATAAGTG 57.278 33.333 10.38 0.00 0.00 3.16
7278 7953 9.190317 AGTTCATTTGAAACCTCTAAAAAGACT 57.810 29.630 0.00 0.00 35.58 3.24
7279 7954 9.803315 GTTCATTTGAAACCTCTAAAAAGACTT 57.197 29.630 0.00 0.00 35.58 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.456594 TTTCAAGTCACGGCGCATGC 62.457 55.000 10.83 7.91 41.71 4.06
2 3 0.168788 ATTTCAAGTCACGGCGCATG 59.831 50.000 10.83 7.22 0.00 4.06
3 4 0.168788 CATTTCAAGTCACGGCGCAT 59.831 50.000 10.83 0.00 0.00 4.73
4 5 1.163420 ACATTTCAAGTCACGGCGCA 61.163 50.000 10.83 0.00 0.00 6.09
5 6 0.725784 CACATTTCAAGTCACGGCGC 60.726 55.000 6.90 0.00 0.00 6.53
6 7 0.110238 CCACATTTCAAGTCACGGCG 60.110 55.000 4.80 4.80 0.00 6.46
7 8 1.234821 TCCACATTTCAAGTCACGGC 58.765 50.000 0.00 0.00 0.00 5.68
8 9 2.094258 CGATCCACATTTCAAGTCACGG 59.906 50.000 0.00 0.00 0.00 4.94
9 10 2.993220 TCGATCCACATTTCAAGTCACG 59.007 45.455 0.00 0.00 0.00 4.35
10 11 4.245660 TCTCGATCCACATTTCAAGTCAC 58.754 43.478 0.00 0.00 0.00 3.67
18 19 3.801698 CCAGTCATCTCGATCCACATTT 58.198 45.455 0.00 0.00 0.00 2.32
80 81 1.214367 AACAACCATGTCACGTCGTC 58.786 50.000 0.00 0.00 39.40 4.20
81 82 2.512485 TAACAACCATGTCACGTCGT 57.488 45.000 0.00 0.00 39.40 4.34
126 127 3.264897 GCACACTAGGCGCCATCG 61.265 66.667 31.54 18.43 39.07 3.84
150 154 1.744741 GCACTTCCAGCTGGCTCTC 60.745 63.158 28.91 11.57 34.44 3.20
216 226 0.179084 GGACATGCCTAAGCGCTACA 60.179 55.000 12.05 7.66 44.31 2.74
232 242 2.748605 CTGCGATACAGGATTCTGGAC 58.251 52.381 5.84 0.00 44.99 4.02
370 381 4.912187 GCTCCTTTCATTCAACTTTCGAAC 59.088 41.667 0.00 0.00 0.00 3.95
383 394 2.685999 GCCTGGGGCTCCTTTCAT 59.314 61.111 3.07 0.00 46.69 2.57
475 491 0.179163 GGCGGCACTGTATTTTCAGC 60.179 55.000 3.07 0.00 38.84 4.26
497 513 0.753111 GGGTTCCTGCCATCATCACC 60.753 60.000 0.00 0.00 0.00 4.02
530 546 7.308649 GCTGCTTATGATGATGATGATGAAAGT 60.309 37.037 0.00 0.00 0.00 2.66
535 551 5.163713 CCTGCTGCTTATGATGATGATGATG 60.164 44.000 0.00 0.00 0.00 3.07
545 561 1.142465 CAGGGACCTGCTGCTTATGAT 59.858 52.381 5.27 0.00 37.24 2.45
662 687 3.755378 AGTTGGTTAGCAGATTGAGCAAG 59.245 43.478 0.00 0.00 31.11 4.01
685 710 1.328374 GACGGCGCGTAATTTTACCAT 59.672 47.619 6.90 0.00 41.37 3.55
687 712 1.001624 AGACGGCGCGTAATTTTACC 58.998 50.000 6.90 0.00 41.37 2.85
699 741 1.153647 TAGGTCATGCAAGACGGCG 60.154 57.895 15.31 4.80 39.42 6.46
758 803 3.227276 ACCTATCAGCTCGCCCCG 61.227 66.667 0.00 0.00 0.00 5.73
765 810 0.621571 TTGCCCTCCACCTATCAGCT 60.622 55.000 0.00 0.00 0.00 4.24
793 838 0.742281 CCAGGCCAGATCGTGTGAAG 60.742 60.000 5.01 0.00 0.00 3.02
801 846 1.777272 ACCCTAAATCCAGGCCAGATC 59.223 52.381 5.01 0.00 34.02 2.75
802 847 1.777272 GACCCTAAATCCAGGCCAGAT 59.223 52.381 5.01 3.53 34.02 2.90
803 848 1.213296 GACCCTAAATCCAGGCCAGA 58.787 55.000 5.01 0.45 34.02 3.86
817 863 3.286871 ACCTAAACCTAACCTGACCCT 57.713 47.619 0.00 0.00 0.00 4.34
823 869 4.818005 CGAACACAAACCTAAACCTAACCT 59.182 41.667 0.00 0.00 0.00 3.50
866 925 3.943034 CGAGCCGAGATCGACGCT 61.943 66.667 3.31 4.75 44.55 5.07
900 959 2.004583 TTATAAGTTCGCGTGCAGCT 57.995 45.000 5.77 0.00 45.59 4.24
920 979 1.529744 TCCCCCTTGTGTTTTCTCCT 58.470 50.000 0.00 0.00 0.00 3.69
922 981 3.958147 TCTTTTCCCCCTTGTGTTTTCTC 59.042 43.478 0.00 0.00 0.00 2.87
923 982 3.989056 TCTTTTCCCCCTTGTGTTTTCT 58.011 40.909 0.00 0.00 0.00 2.52
924 983 4.746535 TTCTTTTCCCCCTTGTGTTTTC 57.253 40.909 0.00 0.00 0.00 2.29
931 990 3.798889 GCGTTTCTTTCTTTTCCCCCTTG 60.799 47.826 0.00 0.00 0.00 3.61
932 991 2.364324 GCGTTTCTTTCTTTTCCCCCTT 59.636 45.455 0.00 0.00 0.00 3.95
1018 1079 3.642741 AAGAGGCGGGGTGGAGGAT 62.643 63.158 0.00 0.00 0.00 3.24
1019 1080 4.332543 AAGAGGCGGGGTGGAGGA 62.333 66.667 0.00 0.00 0.00 3.71
1021 1082 3.003173 TGAAGAGGCGGGGTGGAG 61.003 66.667 0.00 0.00 0.00 3.86
1025 1086 3.637273 GTGGTGAAGAGGCGGGGT 61.637 66.667 0.00 0.00 0.00 4.95
1035 1107 1.911766 GGAGACGGGAGGTGGTGAA 60.912 63.158 0.00 0.00 0.00 3.18
1096 1171 4.853142 TATCCCCTGCCTCCGCGT 62.853 66.667 4.92 0.00 38.08 6.01
1098 1173 2.111251 GTTATCCCCTGCCTCCGC 59.889 66.667 0.00 0.00 0.00 5.54
1099 1174 2.829592 GGTTATCCCCTGCCTCCG 59.170 66.667 0.00 0.00 0.00 4.63
1111 1195 2.852564 GGGGCCGCCTAGGGTTAT 60.853 66.667 11.72 0.00 41.48 1.89
1139 1223 2.572284 GACAGAACGGACGGGAGG 59.428 66.667 0.00 0.00 0.00 4.30
1153 1241 4.819761 GCAGCAGGGCGATCGACA 62.820 66.667 24.83 0.00 0.00 4.35
1198 1292 1.072116 AGACGAGACGAGACGAGACG 61.072 60.000 0.00 0.00 0.00 4.18
1199 1293 1.847999 CTAGACGAGACGAGACGAGAC 59.152 57.143 0.00 0.00 0.00 3.36
1200 1294 1.742268 TCTAGACGAGACGAGACGAGA 59.258 52.381 0.00 0.00 0.00 4.04
1201 1295 2.191815 TCTAGACGAGACGAGACGAG 57.808 55.000 0.00 0.00 0.00 4.18
1202 1296 2.730069 GATCTAGACGAGACGAGACGA 58.270 52.381 0.00 0.00 36.87 4.20
1203 1297 1.449048 CGATCTAGACGAGACGAGACG 59.551 57.143 0.00 0.00 36.87 4.18
1204 1298 1.788308 CCGATCTAGACGAGACGAGAC 59.212 57.143 13.90 0.00 36.87 3.36
1336 1431 7.987458 GGTGGATTGAACTAGTAGAATCATCAA 59.013 37.037 20.44 14.40 0.00 2.57
1344 1439 3.028850 CCCGGTGGATTGAACTAGTAGA 58.971 50.000 3.59 0.00 0.00 2.59
1348 1443 0.810031 CGCCCGGTGGATTGAACTAG 60.810 60.000 0.00 0.00 0.00 2.57
1350 1445 2.046314 CGCCCGGTGGATTGAACT 60.046 61.111 0.00 0.00 0.00 3.01
1351 1446 3.810896 GCGCCCGGTGGATTGAAC 61.811 66.667 0.00 0.00 0.00 3.18
1364 1459 4.814294 AATCCGTGTCCTCGCGCC 62.814 66.667 0.00 0.00 44.80 6.53
1370 1711 3.701604 GAGCGCGAATCCGTGTCCT 62.702 63.158 12.10 0.00 46.98 3.85
1371 1712 3.255379 GAGCGCGAATCCGTGTCC 61.255 66.667 12.10 0.00 46.98 4.02
1395 1754 2.127383 GCAAAAGGCGACGAACGG 60.127 61.111 0.00 0.00 42.83 4.44
1408 1767 2.898729 TCAAGCCAAAAATCCGCAAA 57.101 40.000 0.00 0.00 0.00 3.68
1419 1778 2.254951 CGCACGCAATCAAGCCAA 59.745 55.556 0.00 0.00 0.00 4.52
1422 1781 1.793613 GTGACGCACGCAATCAAGC 60.794 57.895 0.00 0.00 0.00 4.01
1423 1782 4.422506 GTGACGCACGCAATCAAG 57.577 55.556 0.00 0.00 0.00 3.02
1432 1791 1.394697 CCAAACAAATCGTGACGCAC 58.605 50.000 0.00 0.58 0.00 5.34
1434 1793 1.327292 CGCCAAACAAATCGTGACGC 61.327 55.000 0.00 0.00 0.00 5.19
1436 1795 2.392933 TTCGCCAAACAAATCGTGAC 57.607 45.000 0.00 0.00 0.00 3.67
1439 1798 3.848272 ATCATTCGCCAAACAAATCGT 57.152 38.095 0.00 0.00 0.00 3.73
1440 1799 6.624710 TTAAATCATTCGCCAAACAAATCG 57.375 33.333 0.00 0.00 0.00 3.34
1442 1801 7.818930 ACAGATTAAATCATTCGCCAAACAAAT 59.181 29.630 0.00 0.00 0.00 2.32
1449 1808 5.447144 CGACAACAGATTAAATCATTCGCCA 60.447 40.000 0.00 0.00 0.00 5.69
1450 1809 4.963953 CGACAACAGATTAAATCATTCGCC 59.036 41.667 0.00 0.00 0.00 5.54
1451 1810 4.434588 GCGACAACAGATTAAATCATTCGC 59.565 41.667 0.00 0.00 0.00 4.70
1478 1837 3.584406 GCATACAGCAGGATCGTATCT 57.416 47.619 0.00 0.00 44.79 1.98
1523 1884 1.953138 CCACGCATCTCGCATCTCC 60.953 63.158 0.00 0.00 42.60 3.71
1544 1905 4.267357 TCGTTTGTTTTACACACAGCTC 57.733 40.909 0.00 0.00 33.98 4.09
1545 1906 4.334203 TCATCGTTTGTTTTACACACAGCT 59.666 37.500 0.00 0.00 33.98 4.24
1546 1907 4.436523 GTCATCGTTTGTTTTACACACAGC 59.563 41.667 0.00 0.00 33.98 4.40
1548 1909 4.329256 TCGTCATCGTTTGTTTTACACACA 59.671 37.500 0.00 0.00 35.09 3.72
1549 1910 4.663091 GTCGTCATCGTTTGTTTTACACAC 59.337 41.667 0.00 0.00 35.09 3.82
1550 1911 4.548536 CGTCGTCATCGTTTGTTTTACACA 60.549 41.667 0.00 0.00 38.33 3.72
1588 1954 1.215655 CCGCTGCGCTTACTGGATAC 61.216 60.000 18.00 0.00 0.00 2.24
1589 1955 1.067416 CCGCTGCGCTTACTGGATA 59.933 57.895 18.00 0.00 0.00 2.59
1595 1961 1.567504 TTCTATTCCGCTGCGCTTAC 58.432 50.000 18.00 0.00 0.00 2.34
1597 1963 0.940126 CATTCTATTCCGCTGCGCTT 59.060 50.000 18.00 5.69 0.00 4.68
1659 2026 3.990318 TCTGTATATCCGTGTCAGCAG 57.010 47.619 0.00 0.00 0.00 4.24
1681 2048 7.459486 CACCGAAATTATTATCTGCTATGAGC 58.541 38.462 0.00 0.00 42.82 4.26
1683 2050 6.090763 CGCACCGAAATTATTATCTGCTATGA 59.909 38.462 0.00 0.00 0.00 2.15
1684 2051 6.128553 ACGCACCGAAATTATTATCTGCTATG 60.129 38.462 0.00 0.00 0.00 2.23
1685 2052 5.932303 ACGCACCGAAATTATTATCTGCTAT 59.068 36.000 0.00 0.00 0.00 2.97
1686 2053 5.176774 CACGCACCGAAATTATTATCTGCTA 59.823 40.000 0.00 0.00 0.00 3.49
1687 2054 4.024893 CACGCACCGAAATTATTATCTGCT 60.025 41.667 0.00 0.00 0.00 4.24
1688 2055 4.025229 TCACGCACCGAAATTATTATCTGC 60.025 41.667 0.00 0.00 0.00 4.26
1689 2056 5.651172 TCACGCACCGAAATTATTATCTG 57.349 39.130 0.00 0.00 0.00 2.90
1690 2057 6.861065 AATCACGCACCGAAATTATTATCT 57.139 33.333 0.00 0.00 0.00 1.98
1691 2058 8.065407 TGTTAATCACGCACCGAAATTATTATC 58.935 33.333 0.00 0.00 0.00 1.75
1692 2059 7.921787 TGTTAATCACGCACCGAAATTATTAT 58.078 30.769 0.00 0.00 0.00 1.28
1693 2060 7.278203 TCTGTTAATCACGCACCGAAATTATTA 59.722 33.333 0.00 0.00 0.00 0.98
1694 2061 6.092944 TCTGTTAATCACGCACCGAAATTATT 59.907 34.615 0.00 0.00 0.00 1.40
1699 2066 2.477375 GTCTGTTAATCACGCACCGAAA 59.523 45.455 0.00 0.00 0.00 3.46
1703 2070 1.389106 GTCGTCTGTTAATCACGCACC 59.611 52.381 0.00 0.00 0.00 5.01
1921 2312 9.529325 CGAAGGAAGATTAAATGTGATACTGTA 57.471 33.333 0.00 0.00 0.00 2.74
1922 2313 7.011482 GCGAAGGAAGATTAAATGTGATACTGT 59.989 37.037 0.00 0.00 0.00 3.55
1923 2314 7.225538 AGCGAAGGAAGATTAAATGTGATACTG 59.774 37.037 0.00 0.00 0.00 2.74
1924 2315 7.275920 AGCGAAGGAAGATTAAATGTGATACT 58.724 34.615 0.00 0.00 0.00 2.12
1925 2316 7.484035 AGCGAAGGAAGATTAAATGTGATAC 57.516 36.000 0.00 0.00 0.00 2.24
2006 2484 8.181904 ACAGGATAATGTTGAATTGACAGTTT 57.818 30.769 0.00 0.00 0.00 2.66
2009 2487 8.298854 TGAAACAGGATAATGTTGAATTGACAG 58.701 33.333 0.00 0.00 42.49 3.51
2067 2545 7.503566 AGCAATATTCAGCATAATACTGTGGTT 59.496 33.333 1.12 0.00 36.50 3.67
2104 2582 1.722011 ACCACGTGCTATACTGTTGC 58.278 50.000 10.91 0.00 0.00 4.17
2314 2815 2.105993 TCCCTGCTGGAGATCATGAATG 59.894 50.000 11.88 0.00 38.61 2.67
2361 2862 4.037089 GGAACAACTCCCGCTTAAGAAAAA 59.963 41.667 6.67 0.00 38.44 1.94
2366 2868 2.474410 AGGAACAACTCCCGCTTAAG 57.526 50.000 0.00 0.00 46.81 1.85
2441 2964 4.708421 AGTGCTAATTTGATGAACTGGCAT 59.292 37.500 0.00 0.00 0.00 4.40
2442 2965 4.081406 AGTGCTAATTTGATGAACTGGCA 58.919 39.130 0.00 0.00 0.00 4.92
2443 2966 4.082571 ACAGTGCTAATTTGATGAACTGGC 60.083 41.667 0.00 0.00 38.25 4.85
2444 2967 5.413833 AGACAGTGCTAATTTGATGAACTGG 59.586 40.000 0.00 0.00 38.25 4.00
2445 2968 6.072838 ACAGACAGTGCTAATTTGATGAACTG 60.073 38.462 0.00 0.00 39.49 3.16
2446 2969 6.000219 ACAGACAGTGCTAATTTGATGAACT 59.000 36.000 0.00 0.00 0.00 3.01
2447 2970 6.148480 AGACAGACAGTGCTAATTTGATGAAC 59.852 38.462 0.00 0.00 0.00 3.18
2448 2971 6.233434 AGACAGACAGTGCTAATTTGATGAA 58.767 36.000 0.00 0.00 0.00 2.57
2449 2972 5.798132 AGACAGACAGTGCTAATTTGATGA 58.202 37.500 0.00 0.00 0.00 2.92
2450 2973 6.591448 TGTAGACAGACAGTGCTAATTTGATG 59.409 38.462 0.00 0.00 0.00 3.07
2451 2974 6.591834 GTGTAGACAGACAGTGCTAATTTGAT 59.408 38.462 0.00 0.00 0.00 2.57
2452 2975 5.926542 GTGTAGACAGACAGTGCTAATTTGA 59.073 40.000 0.00 0.00 0.00 2.69
2453 2976 5.696270 TGTGTAGACAGACAGTGCTAATTTG 59.304 40.000 0.00 0.00 0.00 2.32
2454 2977 5.853936 TGTGTAGACAGACAGTGCTAATTT 58.146 37.500 0.00 0.00 0.00 1.82
2455 2978 5.468540 TGTGTAGACAGACAGTGCTAATT 57.531 39.130 0.00 0.00 0.00 1.40
2456 2979 5.468540 TTGTGTAGACAGACAGTGCTAAT 57.531 39.130 0.00 0.00 32.26 1.73
2457 2980 4.929819 TTGTGTAGACAGACAGTGCTAA 57.070 40.909 0.00 0.00 32.26 3.09
2458 2981 4.929819 TTTGTGTAGACAGACAGTGCTA 57.070 40.909 0.00 0.00 32.26 3.49
2459 2982 3.819564 TTTGTGTAGACAGACAGTGCT 57.180 42.857 0.00 0.00 32.26 4.40
2460 2983 6.202954 ACTTAATTTGTGTAGACAGACAGTGC 59.797 38.462 0.00 0.00 32.26 4.40
2616 3143 7.104043 TCAATTTCCAATGATTAAGCTCAGG 57.896 36.000 0.00 0.00 0.00 3.86
2673 3202 7.938140 TTCTTGTTTTACTATAGGCTGCATT 57.062 32.000 4.43 0.00 0.00 3.56
2692 3221 4.328983 GCCATCTGATTGTTTGCATTCTTG 59.671 41.667 0.00 0.00 0.00 3.02
2707 3236 9.995003 AACTTAAATTAAAATTGTGCCATCTGA 57.005 25.926 0.00 0.00 0.00 3.27
2776 3305 5.883503 AACAGGACAAACAACGTTCTTTA 57.116 34.783 0.00 0.00 0.00 1.85
2785 3314 5.419155 TCACATGGTTTAACAGGACAAACAA 59.581 36.000 0.00 0.00 36.56 2.83
2838 3367 3.055963 CCATCTAATGCCTCTAGCTCCAG 60.056 52.174 0.00 0.00 44.23 3.86
3070 3612 6.525121 TGACAAGTACGAACAAGAAATCTG 57.475 37.500 0.00 0.00 0.00 2.90
3125 3667 2.370849 ACTTCTTTTTGCGGGGAGAGTA 59.629 45.455 0.00 0.00 0.00 2.59
3270 3818 5.295292 CGAATGTGAGCCAAGAAAGATATGT 59.705 40.000 0.00 0.00 0.00 2.29
3417 3974 3.782889 AGTGAAGGCTTTCAACAACAC 57.217 42.857 13.42 2.91 44.49 3.32
3723 4294 2.038426 TGAGATTTTGAGGAGCGGTTCA 59.962 45.455 0.00 0.00 0.00 3.18
3790 4361 4.074970 GGGCACTCTGATCTCAAGAAAAA 58.925 43.478 0.00 0.00 0.00 1.94
4033 4612 0.822164 ATCGGGAAGAAGGTGTACGG 59.178 55.000 0.00 0.00 0.00 4.02
4078 4660 4.980573 ACAAAGCACACCTTGAACCTATA 58.019 39.130 0.00 0.00 33.01 1.31
4079 4661 3.832527 ACAAAGCACACCTTGAACCTAT 58.167 40.909 0.00 0.00 33.01 2.57
4082 4664 3.568007 TGATACAAAGCACACCTTGAACC 59.432 43.478 0.00 0.00 33.01 3.62
4084 4666 4.460263 ACTGATACAAAGCACACCTTGAA 58.540 39.130 0.00 0.00 33.01 2.69
4085 4667 4.065088 GACTGATACAAAGCACACCTTGA 58.935 43.478 0.00 0.00 33.01 3.02
4086 4668 3.189287 GGACTGATACAAAGCACACCTTG 59.811 47.826 0.00 0.00 33.01 3.61
4087 4669 3.073062 AGGACTGATACAAAGCACACCTT 59.927 43.478 0.00 0.00 34.51 3.50
4088 4670 2.639839 AGGACTGATACAAAGCACACCT 59.360 45.455 0.00 0.00 0.00 4.00
4089 4671 2.744202 CAGGACTGATACAAAGCACACC 59.256 50.000 0.00 0.00 0.00 4.16
4094 4676 5.078411 TCTCTTCAGGACTGATACAAAGC 57.922 43.478 2.42 0.00 39.64 3.51
4095 4677 8.474025 ACTATTCTCTTCAGGACTGATACAAAG 58.526 37.037 2.42 0.00 39.64 2.77
4096 4678 8.367660 ACTATTCTCTTCAGGACTGATACAAA 57.632 34.615 2.42 0.00 39.64 2.83
4098 4680 7.962995 AACTATTCTCTTCAGGACTGATACA 57.037 36.000 2.42 0.00 39.64 2.29
4189 4783 8.842358 TTAGTGACAGGAAACGAAAAATCTAT 57.158 30.769 0.00 0.00 0.00 1.98
4199 4793 5.816919 ACAATGTTTTAGTGACAGGAAACG 58.183 37.500 0.00 0.00 35.36 3.60
4319 4917 4.279169 CCTTTTGCTTGGAGATTGTCTTGA 59.721 41.667 0.00 0.00 0.00 3.02
4364 4962 0.461548 CATCTGAACTCGGGCTAGCA 59.538 55.000 18.24 0.00 0.00 3.49
4419 5017 7.616935 AGATATGTCAATTTTGAGGTCATTGGT 59.383 33.333 0.00 0.00 37.98 3.67
4715 5313 7.584987 CGTCAAAAAGGAGAATCTGTAAACAT 58.415 34.615 0.00 0.00 33.73 2.71
4813 5411 3.403038 GGTTCCGGAGTCATCATAATGG 58.597 50.000 3.34 0.00 33.42 3.16
4926 5524 1.344438 CTGCAGGGCCATAGTTATCGA 59.656 52.381 6.18 0.00 0.00 3.59
4956 5554 2.162408 GGAGTATTTGACACTTGCAGCC 59.838 50.000 0.00 0.00 0.00 4.85
5210 5808 4.344865 GGGTGGACACGGTGGCAT 62.345 66.667 17.13 0.00 0.00 4.40
5310 5908 1.000739 AGTGGGGCCATTGGTGATG 59.999 57.895 4.39 0.00 35.42 3.07
5311 5909 1.000739 CAGTGGGGCCATTGGTGAT 59.999 57.895 4.39 0.00 31.27 3.06
5312 5910 2.440147 CAGTGGGGCCATTGGTGA 59.560 61.111 4.39 0.00 31.27 4.02
5313 5911 3.384532 GCAGTGGGGCCATTGGTG 61.385 66.667 4.39 0.00 34.77 4.17
5328 5926 1.298602 CGGTCGATTCATCATTGGCA 58.701 50.000 0.00 0.00 0.00 4.92
5427 6034 3.054434 TGGATTTGAACCTGGTCGATGAT 60.054 43.478 0.00 0.00 0.00 2.45
5490 6097 0.404040 TGGATTGGAACCTGGTGGAC 59.596 55.000 0.00 0.00 37.04 4.02
5491 6098 0.404040 GTGGATTGGAACCTGGTGGA 59.596 55.000 0.00 0.00 37.04 4.02
5492 6099 0.611896 GGTGGATTGGAACCTGGTGG 60.612 60.000 0.00 0.00 39.83 4.61
5493 6100 0.405585 AGGTGGATTGGAACCTGGTG 59.594 55.000 0.00 0.00 45.26 4.17
5494 6101 2.053747 TAGGTGGATTGGAACCTGGT 57.946 50.000 4.61 0.00 46.42 4.00
5495 6102 2.509548 TCATAGGTGGATTGGAACCTGG 59.490 50.000 4.61 0.00 46.42 4.45
5496 6103 3.200825 ACTCATAGGTGGATTGGAACCTG 59.799 47.826 4.61 0.00 46.42 4.00
5498 6105 3.741388 CGACTCATAGGTGGATTGGAACC 60.741 52.174 0.00 0.00 36.66 3.62
5499 6106 3.118738 ACGACTCATAGGTGGATTGGAAC 60.119 47.826 0.00 0.00 0.00 3.62
5500 6107 3.104512 ACGACTCATAGGTGGATTGGAA 58.895 45.455 0.00 0.00 0.00 3.53
5501 6108 2.693591 GACGACTCATAGGTGGATTGGA 59.306 50.000 0.00 0.00 0.00 3.53
5502 6109 2.224066 GGACGACTCATAGGTGGATTGG 60.224 54.545 0.00 0.00 0.00 3.16
5503 6110 2.430694 TGGACGACTCATAGGTGGATTG 59.569 50.000 0.00 0.00 0.00 2.67
5504 6111 2.431057 GTGGACGACTCATAGGTGGATT 59.569 50.000 0.00 0.00 0.00 3.01
5505 6112 2.032620 GTGGACGACTCATAGGTGGAT 58.967 52.381 0.00 0.00 0.00 3.41
5506 6113 1.471119 GTGGACGACTCATAGGTGGA 58.529 55.000 0.00 0.00 0.00 4.02
5507 6114 0.460311 GGTGGACGACTCATAGGTGG 59.540 60.000 0.00 0.00 0.00 4.61
5508 6115 1.135139 CTGGTGGACGACTCATAGGTG 59.865 57.143 0.00 0.00 0.00 4.00
5509 6116 1.475403 CTGGTGGACGACTCATAGGT 58.525 55.000 0.00 0.00 0.00 3.08
5510 6117 0.747255 CCTGGTGGACGACTCATAGG 59.253 60.000 0.00 0.00 34.57 2.57
5511 6118 1.475403 ACCTGGTGGACGACTCATAG 58.525 55.000 0.00 0.00 37.04 2.23
5512 6119 1.822990 GAACCTGGTGGACGACTCATA 59.177 52.381 0.00 0.00 37.04 2.15
5513 6120 0.608640 GAACCTGGTGGACGACTCAT 59.391 55.000 0.00 0.00 37.04 2.90
5514 6121 0.757561 TGAACCTGGTGGACGACTCA 60.758 55.000 0.00 0.00 37.04 3.41
5515 6122 0.391597 TTGAACCTGGTGGACGACTC 59.608 55.000 0.00 0.00 37.04 3.36
5516 6123 0.834612 TTTGAACCTGGTGGACGACT 59.165 50.000 0.00 0.00 37.04 4.18
5517 6124 1.804748 GATTTGAACCTGGTGGACGAC 59.195 52.381 0.00 0.00 37.04 4.34
5518 6125 1.271163 GGATTTGAACCTGGTGGACGA 60.271 52.381 0.00 0.00 37.04 4.20
5519 6126 1.165270 GGATTTGAACCTGGTGGACG 58.835 55.000 0.00 0.00 37.04 4.79
5520 6127 1.886542 GTGGATTTGAACCTGGTGGAC 59.113 52.381 0.00 0.00 37.04 4.02
5556 6163 1.140852 TCATAGCTGGATTTGACCCCG 59.859 52.381 0.00 0.00 0.00 5.73
5557 6164 2.173569 ACTCATAGCTGGATTTGACCCC 59.826 50.000 0.00 0.00 0.00 4.95
5558 6165 3.118261 TGACTCATAGCTGGATTTGACCC 60.118 47.826 0.00 0.00 0.00 4.46
5559 6166 4.142609 TGACTCATAGCTGGATTTGACC 57.857 45.455 0.00 0.00 0.00 4.02
5560 6167 4.754114 GGATGACTCATAGCTGGATTTGAC 59.246 45.833 0.00 0.00 0.00 3.18
5561 6168 4.409901 TGGATGACTCATAGCTGGATTTGA 59.590 41.667 0.00 0.00 0.00 2.69
5562 6169 4.514441 GTGGATGACTCATAGCTGGATTTG 59.486 45.833 0.00 0.00 0.00 2.32
5563 6170 4.445448 GGTGGATGACTCATAGCTGGATTT 60.445 45.833 0.00 0.00 0.00 2.17
5564 6171 3.072184 GGTGGATGACTCATAGCTGGATT 59.928 47.826 0.00 0.00 0.00 3.01
5565 6172 2.636893 GGTGGATGACTCATAGCTGGAT 59.363 50.000 0.00 0.00 0.00 3.41
5566 6173 2.042464 GGTGGATGACTCATAGCTGGA 58.958 52.381 0.00 0.00 0.00 3.86
5567 6174 1.269988 CGGTGGATGACTCATAGCTGG 60.270 57.143 0.00 0.00 0.00 4.85
5568 6175 1.269988 CCGGTGGATGACTCATAGCTG 60.270 57.143 0.00 0.00 0.00 4.24
5569 6176 1.043816 CCGGTGGATGACTCATAGCT 58.956 55.000 0.00 0.00 0.00 3.32
5570 6177 0.034059 CCCGGTGGATGACTCATAGC 59.966 60.000 0.00 0.00 0.00 2.97
5571 6178 1.414158 ACCCGGTGGATGACTCATAG 58.586 55.000 0.00 0.00 34.81 2.23
5572 6179 1.760613 GAACCCGGTGGATGACTCATA 59.239 52.381 0.00 0.00 34.81 2.15
5573 6180 0.541863 GAACCCGGTGGATGACTCAT 59.458 55.000 0.00 0.00 34.81 2.90
5574 6181 0.834261 TGAACCCGGTGGATGACTCA 60.834 55.000 0.00 0.00 34.81 3.41
5575 6182 0.323629 TTGAACCCGGTGGATGACTC 59.676 55.000 0.00 0.00 34.81 3.36
5576 6183 0.768622 TTTGAACCCGGTGGATGACT 59.231 50.000 0.00 0.00 34.81 3.41
5577 6184 1.743394 GATTTGAACCCGGTGGATGAC 59.257 52.381 0.00 0.00 34.81 3.06
5578 6185 1.340600 GGATTTGAACCCGGTGGATGA 60.341 52.381 0.00 0.00 34.81 2.92
5579 6186 1.102978 GGATTTGAACCCGGTGGATG 58.897 55.000 0.00 0.00 34.81 3.51
5580 6187 0.701731 TGGATTTGAACCCGGTGGAT 59.298 50.000 0.00 0.00 34.81 3.41
5581 6188 0.037590 CTGGATTTGAACCCGGTGGA 59.962 55.000 0.00 0.00 34.81 4.02
5582 6189 1.595093 GCTGGATTTGAACCCGGTGG 61.595 60.000 0.00 0.00 37.80 4.61
5583 6190 0.609131 AGCTGGATTTGAACCCGGTG 60.609 55.000 0.00 0.00 0.00 4.94
5584 6191 0.988832 TAGCTGGATTTGAACCCGGT 59.011 50.000 0.00 0.00 0.00 5.28
5585 6192 1.949525 CATAGCTGGATTTGAACCCGG 59.050 52.381 0.00 0.00 0.00 5.73
5823 6490 5.254267 TCAATACCATTAGTTTGGGGAGGAA 59.746 40.000 0.00 0.00 41.35 3.36
6001 6668 3.683340 ACTTTATCCTTTTCGAGCCGTTC 59.317 43.478 0.00 0.00 0.00 3.95
6058 6725 4.523943 AGTCAAAAACATGAATAGCAGCCA 59.476 37.500 0.00 0.00 0.00 4.75
6071 6738 6.090483 TGAACCAAAGAACAGTCAAAAACA 57.910 33.333 0.00 0.00 0.00 2.83
6127 6794 3.386237 AGGGAGCTGGCGTCTGAC 61.386 66.667 0.00 0.00 0.00 3.51
6128 6795 3.385384 CAGGGAGCTGGCGTCTGA 61.385 66.667 0.00 0.00 0.00 3.27
6379 7050 7.073883 GTCCCGTAAGAAACTATTTTTCACAC 58.926 38.462 0.00 0.00 43.02 3.82
6418 7089 6.718294 ACGGAGGGAGTAATTAAGTTTTCAT 58.282 36.000 0.00 0.00 0.00 2.57
6433 7104 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
6434 7105 5.222484 ACTCTTATATTATGGGACGGAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
6435 7106 5.024118 ACTCTTATATTATGGGACGGAGGG 58.976 45.833 0.00 0.00 0.00 4.30
6436 7107 5.480772 ACACTCTTATATTATGGGACGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
6437 7108 6.591750 ACACTCTTATATTATGGGACGGAG 57.408 41.667 0.00 0.00 0.00 4.63
6438 7109 6.989155 AACACTCTTATATTATGGGACGGA 57.011 37.500 0.00 0.00 0.00 4.69
6439 7110 8.342634 CAAAAACACTCTTATATTATGGGACGG 58.657 37.037 0.00 0.00 0.00 4.79
6440 7111 9.104965 TCAAAAACACTCTTATATTATGGGACG 57.895 33.333 0.00 0.00 0.00 4.79
6442 7113 9.967451 TGTCAAAAACACTCTTATATTATGGGA 57.033 29.630 0.00 0.00 31.20 4.37
6458 7129 5.893687 TGTCTACTCGTAGTGTCAAAAACA 58.106 37.500 4.19 0.00 35.24 2.83
6459 7130 6.254157 TGTTGTCTACTCGTAGTGTCAAAAAC 59.746 38.462 4.19 0.00 35.24 2.43
6460 7131 6.331845 TGTTGTCTACTCGTAGTGTCAAAAA 58.668 36.000 4.19 0.80 35.24 1.94
6461 7132 5.893687 TGTTGTCTACTCGTAGTGTCAAAA 58.106 37.500 4.19 2.59 35.24 2.44
6462 7133 5.503662 TGTTGTCTACTCGTAGTGTCAAA 57.496 39.130 4.19 0.44 35.24 2.69
6463 7134 5.503662 TTGTTGTCTACTCGTAGTGTCAA 57.496 39.130 4.19 6.17 35.24 3.18
6464 7135 5.503662 TTTGTTGTCTACTCGTAGTGTCA 57.496 39.130 4.19 1.22 35.24 3.58
6465 7136 4.916249 CCTTTGTTGTCTACTCGTAGTGTC 59.084 45.833 4.19 0.00 35.24 3.67
6466 7137 4.581824 TCCTTTGTTGTCTACTCGTAGTGT 59.418 41.667 4.19 0.00 38.10 3.55
6467 7138 5.117355 TCCTTTGTTGTCTACTCGTAGTG 57.883 43.478 4.19 0.00 34.84 2.74
6468 7139 5.508657 GGTTCCTTTGTTGTCTACTCGTAGT 60.509 44.000 4.19 0.00 34.84 2.73
6469 7140 4.922103 GGTTCCTTTGTTGTCTACTCGTAG 59.078 45.833 0.00 0.00 34.56 3.51
6470 7141 4.341806 TGGTTCCTTTGTTGTCTACTCGTA 59.658 41.667 0.00 0.00 0.00 3.43
6471 7142 3.133362 TGGTTCCTTTGTTGTCTACTCGT 59.867 43.478 0.00 0.00 0.00 4.18
6472 7143 3.724374 TGGTTCCTTTGTTGTCTACTCG 58.276 45.455 0.00 0.00 0.00 4.18
6473 7144 7.739498 TTATTGGTTCCTTTGTTGTCTACTC 57.261 36.000 0.00 0.00 0.00 2.59
6474 7145 7.942341 TCATTATTGGTTCCTTTGTTGTCTACT 59.058 33.333 0.00 0.00 0.00 2.57
6475 7146 8.106247 TCATTATTGGTTCCTTTGTTGTCTAC 57.894 34.615 0.00 0.00 0.00 2.59
6476 7147 8.877864 ATCATTATTGGTTCCTTTGTTGTCTA 57.122 30.769 0.00 0.00 0.00 2.59
6477 7148 7.781324 ATCATTATTGGTTCCTTTGTTGTCT 57.219 32.000 0.00 0.00 0.00 3.41
6863 7534 9.620259 GATTTCACAAAATATCTACTTCCTCCT 57.380 33.333 0.00 0.00 35.21 3.69
6887 7558 6.959639 ATAAAGTTGGTCAGTGTGTTTGAT 57.040 33.333 0.00 0.00 0.00 2.57
7047 7722 9.778993 CATGCTGCATATTACCATTATAGTTTC 57.221 33.333 15.78 0.00 0.00 2.78
7058 7733 3.803778 GCCAAAACATGCTGCATATTACC 59.196 43.478 15.78 2.83 0.00 2.85
7059 7734 4.685924 AGCCAAAACATGCTGCATATTAC 58.314 39.130 15.78 7.17 36.23 1.89
7069 7744 2.818130 TTCTTCCAGCCAAAACATGC 57.182 45.000 0.00 0.00 0.00 4.06
7081 7756 6.071952 GCCAGAACATGATTTACTTTCTTCCA 60.072 38.462 0.00 0.00 0.00 3.53
7107 7782 6.455913 GGCGTGCGTTATAGTATTTTCTTTGA 60.456 38.462 0.00 0.00 0.00 2.69
7108 7783 5.675444 GGCGTGCGTTATAGTATTTTCTTTG 59.325 40.000 0.00 0.00 0.00 2.77
7109 7784 5.352016 TGGCGTGCGTTATAGTATTTTCTTT 59.648 36.000 0.00 0.00 0.00 2.52
7110 7785 4.871557 TGGCGTGCGTTATAGTATTTTCTT 59.128 37.500 0.00 0.00 0.00 2.52
7111 7786 4.435425 TGGCGTGCGTTATAGTATTTTCT 58.565 39.130 0.00 0.00 0.00 2.52
7112 7787 4.782252 TGGCGTGCGTTATAGTATTTTC 57.218 40.909 0.00 0.00 0.00 2.29
7113 7788 5.744666 ATTGGCGTGCGTTATAGTATTTT 57.255 34.783 0.00 0.00 0.00 1.82
7114 7789 5.744666 AATTGGCGTGCGTTATAGTATTT 57.255 34.783 0.00 0.00 0.00 1.40
7115 7790 5.294799 TGAAATTGGCGTGCGTTATAGTATT 59.705 36.000 0.00 0.00 0.00 1.89
7116 7791 4.812091 TGAAATTGGCGTGCGTTATAGTAT 59.188 37.500 0.00 0.00 0.00 2.12
7117 7792 4.182339 TGAAATTGGCGTGCGTTATAGTA 58.818 39.130 0.00 0.00 0.00 1.82
7118 7793 3.004171 TGAAATTGGCGTGCGTTATAGT 58.996 40.909 0.00 0.00 0.00 2.12
7119 7794 3.308595 TCTGAAATTGGCGTGCGTTATAG 59.691 43.478 0.00 0.00 0.00 1.31
7120 7795 3.263261 TCTGAAATTGGCGTGCGTTATA 58.737 40.909 0.00 0.00 0.00 0.98
7121 7796 2.080693 TCTGAAATTGGCGTGCGTTAT 58.919 42.857 0.00 0.00 0.00 1.89
7122 7797 1.514003 TCTGAAATTGGCGTGCGTTA 58.486 45.000 0.00 0.00 0.00 3.18
7123 7798 0.665835 TTCTGAAATTGGCGTGCGTT 59.334 45.000 0.00 0.00 0.00 4.84
7124 7799 0.665835 TTTCTGAAATTGGCGTGCGT 59.334 45.000 0.00 0.00 0.00 5.24
7125 7800 1.981254 ATTTCTGAAATTGGCGTGCG 58.019 45.000 9.76 0.00 0.00 5.34
7126 7801 4.423732 ACATATTTCTGAAATTGGCGTGC 58.576 39.130 19.68 0.00 32.38 5.34
7127 7802 8.559536 AGTATACATATTTCTGAAATTGGCGTG 58.440 33.333 19.68 13.09 32.38 5.34
7128 7803 8.677148 AGTATACATATTTCTGAAATTGGCGT 57.323 30.769 19.68 13.67 32.38 5.68
7159 7834 8.977412 TCCTTGTTGGAATTTCTAAAAAGACTT 58.023 29.630 20.96 0.00 42.94 3.01
7160 7835 8.533569 TCCTTGTTGGAATTTCTAAAAAGACT 57.466 30.769 20.96 0.00 42.94 3.24
7175 7850 5.880332 GCTTCATATGTAGTTCCTTGTTGGA 59.120 40.000 10.61 0.00 44.51 3.53
7176 7851 5.647658 TGCTTCATATGTAGTTCCTTGTTGG 59.352 40.000 10.61 0.00 37.10 3.77
7177 7852 6.741992 TGCTTCATATGTAGTTCCTTGTTG 57.258 37.500 10.61 0.00 0.00 3.33
7178 7853 7.759489 TTTGCTTCATATGTAGTTCCTTGTT 57.241 32.000 10.61 0.00 0.00 2.83
7179 7854 7.759489 TTTTGCTTCATATGTAGTTCCTTGT 57.241 32.000 10.61 0.00 0.00 3.16
7182 7857 9.686683 ACTTATTTTGCTTCATATGTAGTTCCT 57.313 29.630 10.61 0.00 0.00 3.36
7183 7858 9.722056 CACTTATTTTGCTTCATATGTAGTTCC 57.278 33.333 10.61 0.00 0.00 3.62
7193 7868 9.236006 AGTGTAGATTCACTTATTTTGCTTCAT 57.764 29.630 0.00 0.00 44.92 2.57
7194 7869 8.621532 AGTGTAGATTCACTTATTTTGCTTCA 57.378 30.769 0.00 0.00 44.92 3.02
7252 7927 9.190317 AGTCTTTTTAGAGGTTTCAAATGAACT 57.810 29.630 0.00 0.00 33.13 3.01
7253 7928 9.803315 AAGTCTTTTTAGAGGTTTCAAATGAAC 57.197 29.630 0.00 0.00 33.13 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.