Multiple sequence alignment - TraesCS2D01G491800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G491800 chr2D 100.000 2925 0 0 1 2925 590073989 590076913 0.000000e+00 5402.0
1 TraesCS2D01G491800 chr2D 94.656 973 43 7 949 1917 590081025 590081992 0.000000e+00 1500.0
2 TraesCS2D01G491800 chr2D 84.545 977 130 17 955 1924 590087007 590086045 0.000000e+00 948.0
3 TraesCS2D01G491800 chr2D 81.009 1011 157 22 930 1924 590091997 590091006 0.000000e+00 771.0
4 TraesCS2D01G491800 chr2D 82.963 270 29 12 627 886 74146851 74147113 8.150000e-56 228.0
5 TraesCS2D01G491800 chr2D 86.517 89 8 3 2201 2285 86081000 86080912 8.630000e-16 95.3
6 TraesCS2D01G491800 chr2D 89.394 66 7 0 565 630 590074192 590074257 1.870000e-12 84.2
7 TraesCS2D01G491800 chr2D 89.394 66 7 0 204 269 590074553 590074618 1.870000e-12 84.2
8 TraesCS2D01G491800 chr2A 87.775 1775 119 50 164 1928 724379866 724381552 0.000000e+00 1986.0
9 TraesCS2D01G491800 chr2A 91.843 1042 60 11 881 1917 724397799 724398820 0.000000e+00 1430.0
10 TraesCS2D01G491800 chr2A 81.095 968 154 19 975 1923 724425578 724424621 0.000000e+00 747.0
11 TraesCS2D01G491800 chr2A 91.716 338 19 7 2022 2354 724381551 724381884 7.390000e-126 460.0
12 TraesCS2D01G491800 chr2A 92.500 320 18 4 2603 2916 724381944 724382263 1.240000e-123 453.0
13 TraesCS2D01G491800 chr2A 94.000 150 6 1 1 147 724379570 724379719 1.050000e-54 224.0
14 TraesCS2D01G491800 chr2A 88.889 162 12 4 472 627 724397643 724397804 8.270000e-46 195.0
15 TraesCS2D01G491800 chr2A 93.443 61 4 0 205 265 724397743 724397803 1.120000e-14 91.6
16 TraesCS2D01G491800 chr2A 85.393 89 9 3 2201 2285 86440630 86440542 4.010000e-14 89.8
17 TraesCS2D01G491800 chr2B 93.201 956 57 5 964 1914 714502156 714503108 0.000000e+00 1399.0
18 TraesCS2D01G491800 chr2B 81.656 954 149 18 975 1920 714519328 714518393 0.000000e+00 769.0
19 TraesCS2D01G491800 chr2B 80.725 965 145 23 975 1923 714523362 714522423 0.000000e+00 713.0
20 TraesCS2D01G491800 chr2B 85.393 89 9 3 2201 2285 139072918 139072830 4.010000e-14 89.8
21 TraesCS2D01G491800 chr6D 81.573 445 58 15 2459 2894 428190303 428190732 2.160000e-91 346.0
22 TraesCS2D01G491800 chr6D 87.719 114 13 1 1917 2030 472719972 472719860 6.580000e-27 132.0
23 TraesCS2D01G491800 chr6D 87.059 85 7 4 2204 2284 88776497 88776581 3.100000e-15 93.5
24 TraesCS2D01G491800 chr4A 83.955 268 27 12 629 886 533320961 533320700 2.910000e-60 243.0
25 TraesCS2D01G491800 chr4A 81.955 266 35 8 628 885 450340620 450340360 2.280000e-51 213.0
26 TraesCS2D01G491800 chr4A 81.716 268 38 7 625 885 467683849 467684112 2.280000e-51 213.0
27 TraesCS2D01G491800 chr3A 83.459 266 32 7 629 886 630925244 630924983 1.350000e-58 237.0
28 TraesCS2D01G491800 chr3A 88.393 112 8 3 1926 2035 723648037 723647929 2.370000e-26 130.0
29 TraesCS2D01G491800 chr3A 87.736 106 8 5 2793 2894 739729087 739729191 5.120000e-23 119.0
30 TraesCS2D01G491800 chr7A 83.459 266 30 11 628 885 515737512 515737771 4.870000e-58 235.0
31 TraesCS2D01G491800 chr7A 82.847 274 33 9 621 885 448119989 448120257 1.750000e-57 233.0
32 TraesCS2D01G491800 chr7A 87.209 86 8 3 2204 2286 634962433 634962348 8.630000e-16 95.3
33 TraesCS2D01G491800 chr5D 80.783 281 40 10 623 894 563407977 563407702 1.060000e-49 207.0
34 TraesCS2D01G491800 chr5D 93.000 100 7 0 1927 2026 461439207 461439108 2.350000e-31 147.0
35 TraesCS2D01G491800 chr5D 88.983 118 7 6 1910 2026 446276446 446276334 1.090000e-29 141.0
36 TraesCS2D01G491800 chr5D 84.746 118 11 6 2779 2892 452491293 452491407 8.570000e-21 111.0
37 TraesCS2D01G491800 chr5D 89.157 83 7 2 2206 2286 357900416 357900498 5.160000e-18 102.0
38 TraesCS2D01G491800 chr4D 90.654 107 7 3 1927 2033 275755119 275755016 3.930000e-29 139.0
39 TraesCS2D01G491800 chr3B 92.857 98 4 3 1926 2023 16891148 16891054 3.930000e-29 139.0
40 TraesCS2D01G491800 chr3B 85.217 115 13 4 2779 2891 411849698 411849810 6.620000e-22 115.0
41 TraesCS2D01G491800 chr1D 90.476 105 9 1 1927 2030 313200908 313201012 1.410000e-28 137.0
42 TraesCS2D01G491800 chr1A 89.189 111 5 6 1919 2026 492431637 492431531 6.580000e-27 132.0
43 TraesCS2D01G491800 chr1A 87.619 105 9 4 2793 2894 62797932 62797829 5.120000e-23 119.0
44 TraesCS2D01G491800 chr1B 88.496 113 5 8 1915 2023 301472063 301472171 2.370000e-26 130.0
45 TraesCS2D01G491800 chr6B 86.087 115 13 3 2779 2891 39777208 39777095 1.420000e-23 121.0
46 TraesCS2D01G491800 chr6B 90.217 92 7 2 2801 2891 39768537 39768447 5.120000e-23 119.0
47 TraesCS2D01G491800 chr6B 90.217 92 7 2 2801 2891 39779383 39779293 5.120000e-23 119.0
48 TraesCS2D01G491800 chr6B 90.217 92 7 2 2801 2891 39783774 39783684 5.120000e-23 119.0
49 TraesCS2D01G491800 chr7D 88.235 85 7 3 2203 2284 427001141 427001225 6.670000e-17 99.0
50 TraesCS2D01G491800 chr6A 86.364 88 9 3 2201 2285 19885458 19885545 3.100000e-15 93.5
51 TraesCS2D01G491800 chrUn 77.717 184 16 14 1 166 81438135 81437959 4.010000e-14 89.8
52 TraesCS2D01G491800 chrUn 100.000 32 0 0 126 157 81438041 81438010 3.150000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G491800 chr2D 590073989 590076913 2924 False 1856.80 5402 92.929333 1 2925 3 chr2D.!!$F3 2924
1 TraesCS2D01G491800 chr2D 590081025 590081992 967 False 1500.00 1500 94.656000 949 1917 1 chr2D.!!$F2 968
2 TraesCS2D01G491800 chr2D 590086045 590091997 5952 True 859.50 948 82.777000 930 1924 2 chr2D.!!$R2 994
3 TraesCS2D01G491800 chr2A 724379570 724382263 2693 False 780.75 1986 91.497750 1 2916 4 chr2A.!!$F1 2915
4 TraesCS2D01G491800 chr2A 724424621 724425578 957 True 747.00 747 81.095000 975 1923 1 chr2A.!!$R2 948
5 TraesCS2D01G491800 chr2A 724397643 724398820 1177 False 572.20 1430 91.391667 205 1917 3 chr2A.!!$F2 1712
6 TraesCS2D01G491800 chr2B 714502156 714503108 952 False 1399.00 1399 93.201000 964 1914 1 chr2B.!!$F1 950
7 TraesCS2D01G491800 chr2B 714518393 714523362 4969 True 741.00 769 81.190500 975 1923 2 chr2B.!!$R2 948

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 371 0.162294 CGACGTGCCGTTACTTTTCC 59.838 55.0 0.0 0.0 41.37 3.13 F
902 1054 0.614979 TATCAGCTATCCCCTCCCGC 60.615 60.0 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1046 1200 1.648504 GTTTAACGTGGGGAGGATCG 58.351 55.0 0.0 0.0 34.37 3.69 R
2750 11924 0.035439 AAATGGGATCGAACGTGCCT 60.035 50.0 0.0 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.331002 TGTGCGTCAAAGCCCATAA 57.669 47.368 0.00 0.00 36.02 1.90
98 102 2.484742 AACGGCGATAGGGTTTTCTT 57.515 45.000 16.62 0.00 0.00 2.52
99 103 1.734163 ACGGCGATAGGGTTTTCTTG 58.266 50.000 16.62 0.00 0.00 3.02
147 151 2.744741 GAGCAGGAAAGGTTGAGCTAAC 59.255 50.000 0.00 0.00 38.60 2.34
148 152 1.464997 GCAGGAAAGGTTGAGCTAACG 59.535 52.381 0.00 0.00 40.28 3.18
150 154 3.399330 CAGGAAAGGTTGAGCTAACGAA 58.601 45.455 0.00 0.00 40.28 3.85
151 155 4.003648 CAGGAAAGGTTGAGCTAACGAAT 58.996 43.478 0.00 0.00 40.28 3.34
152 156 4.093556 CAGGAAAGGTTGAGCTAACGAATC 59.906 45.833 0.00 0.00 40.28 2.52
153 157 4.020128 AGGAAAGGTTGAGCTAACGAATCT 60.020 41.667 0.00 0.00 40.28 2.40
154 158 4.695928 GGAAAGGTTGAGCTAACGAATCTT 59.304 41.667 0.00 0.00 40.28 2.40
158 162 5.305585 AGGTTGAGCTAACGAATCTTCAAA 58.694 37.500 0.00 0.00 40.28 2.69
159 163 5.409826 AGGTTGAGCTAACGAATCTTCAAAG 59.590 40.000 0.00 0.00 40.28 2.77
160 164 5.390991 GGTTGAGCTAACGAATCTTCAAAGG 60.391 44.000 0.00 0.00 40.28 3.11
161 165 5.147330 TGAGCTAACGAATCTTCAAAGGA 57.853 39.130 0.00 0.00 0.00 3.36
162 166 5.547465 TGAGCTAACGAATCTTCAAAGGAA 58.453 37.500 0.00 0.00 0.00 3.36
194 328 1.376037 CCTGAGCTTTCCGTGGACC 60.376 63.158 0.00 0.00 0.00 4.46
196 330 2.154798 CTGAGCTTTCCGTGGACCGA 62.155 60.000 0.00 0.00 39.56 4.69
197 331 1.218316 GAGCTTTCCGTGGACCGAT 59.782 57.895 0.00 0.00 39.56 4.18
198 332 0.806492 GAGCTTTCCGTGGACCGATC 60.806 60.000 0.00 0.00 39.56 3.69
199 333 2.165301 GCTTTCCGTGGACCGATCG 61.165 63.158 8.51 8.51 39.56 3.69
200 334 1.509463 CTTTCCGTGGACCGATCGA 59.491 57.895 18.66 0.00 39.56 3.59
206 340 1.470979 CCGTGGACCGATCGATTTTCT 60.471 52.381 18.66 0.00 39.56 2.52
234 368 4.736165 ACGACGTGCCGTTACTTT 57.264 50.000 0.00 0.00 41.37 2.66
235 369 2.976271 ACGACGTGCCGTTACTTTT 58.024 47.368 0.00 0.00 41.37 2.27
236 370 0.854705 ACGACGTGCCGTTACTTTTC 59.145 50.000 0.00 0.00 41.37 2.29
237 371 0.162294 CGACGTGCCGTTACTTTTCC 59.838 55.000 0.00 0.00 41.37 3.13
238 372 1.219646 GACGTGCCGTTACTTTTCCA 58.780 50.000 0.00 0.00 41.37 3.53
267 401 2.641197 GGTTGACCGGTGAGCAAAT 58.359 52.632 14.63 0.00 0.00 2.32
268 402 1.816074 GGTTGACCGGTGAGCAAATA 58.184 50.000 14.63 0.00 0.00 1.40
269 403 2.156098 GGTTGACCGGTGAGCAAATAA 58.844 47.619 14.63 0.00 0.00 1.40
270 404 2.161609 GGTTGACCGGTGAGCAAATAAG 59.838 50.000 14.63 0.00 0.00 1.73
303 437 1.077501 TCCCCCTACGTACGTCAGG 60.078 63.158 26.53 25.47 0.00 3.86
335 469 6.310941 TCCTCAAATAACATTGTCAGGGAAA 58.689 36.000 0.00 0.00 0.00 3.13
346 480 5.772825 TTGTCAGGGAAACAAATCTTGAG 57.227 39.130 0.00 0.00 33.86 3.02
377 511 1.491670 CGTGGATGATTAGTCCAGCG 58.508 55.000 0.00 0.00 45.91 5.18
380 514 1.138859 TGGATGATTAGTCCAGCGGTG 59.861 52.381 7.86 7.86 40.72 4.94
404 538 3.990469 CGTGTGCAGACTAGTTTTCTCAT 59.010 43.478 12.66 0.00 0.00 2.90
407 541 4.214119 TGTGCAGACTAGTTTTCTCATTGC 59.786 41.667 0.00 0.00 0.00 3.56
417 551 3.490439 TTTCTCATTGCACCTGACTGA 57.510 42.857 0.00 0.00 0.00 3.41
431 565 6.072064 GCACCTGACTGAAACTAGTTAGACTA 60.072 42.308 8.92 0.00 36.66 2.59
432 566 7.363094 GCACCTGACTGAAACTAGTTAGACTAT 60.363 40.741 8.92 0.00 36.66 2.12
434 568 8.110908 ACCTGACTGAAACTAGTTAGACTATCT 58.889 37.037 8.92 0.00 36.66 1.98
442 576 9.169592 GAAACTAGTTAGACTATCTGAGACACT 57.830 37.037 8.92 0.00 29.08 3.55
452 586 9.249053 AGACTATCTGAGACACTTATTTTGAGA 57.751 33.333 0.00 0.00 0.00 3.27
453 587 9.296400 GACTATCTGAGACACTTATTTTGAGAC 57.704 37.037 0.00 0.00 0.00 3.36
454 588 7.971168 ACTATCTGAGACACTTATTTTGAGACG 59.029 37.037 0.00 0.00 0.00 4.18
455 589 6.327279 TCTGAGACACTTATTTTGAGACGA 57.673 37.500 0.00 0.00 0.00 4.20
456 590 6.382608 TCTGAGACACTTATTTTGAGACGAG 58.617 40.000 0.00 0.00 0.00 4.18
459 593 5.715070 AGACACTTATTTTGAGACGAGAGG 58.285 41.667 0.00 0.00 0.00 3.69
460 594 5.477291 AGACACTTATTTTGAGACGAGAGGA 59.523 40.000 0.00 0.00 0.00 3.71
461 595 5.715070 ACACTTATTTTGAGACGAGAGGAG 58.285 41.667 0.00 0.00 0.00 3.69
462 596 5.244178 ACACTTATTTTGAGACGAGAGGAGT 59.756 40.000 0.00 0.00 0.00 3.85
463 597 6.433404 ACACTTATTTTGAGACGAGAGGAGTA 59.567 38.462 0.00 0.00 0.00 2.59
464 598 7.122948 ACACTTATTTTGAGACGAGAGGAGTAT 59.877 37.037 0.00 0.00 0.00 2.12
465 599 8.622157 CACTTATTTTGAGACGAGAGGAGTATA 58.378 37.037 0.00 0.00 0.00 1.47
466 600 8.623030 ACTTATTTTGAGACGAGAGGAGTATAC 58.377 37.037 0.00 0.00 0.00 1.47
467 601 8.749026 TTATTTTGAGACGAGAGGAGTATACT 57.251 34.615 4.68 4.68 0.00 2.12
468 602 9.842775 TTATTTTGAGACGAGAGGAGTATACTA 57.157 33.333 5.09 0.00 0.00 1.82
469 603 8.927675 ATTTTGAGACGAGAGGAGTATACTAT 57.072 34.615 5.09 0.00 0.00 2.12
471 605 9.842775 TTTTGAGACGAGAGGAGTATACTATAA 57.157 33.333 5.09 0.00 0.00 0.98
500 638 7.122948 ACAAACACCAAAGGTAATCTGTACAAA 59.877 33.333 0.00 0.00 32.11 2.83
503 641 7.001674 ACACCAAAGGTAATCTGTACAAATGA 58.998 34.615 0.00 0.00 32.11 2.57
506 644 8.522830 ACCAAAGGTAATCTGTACAAATGATTG 58.477 33.333 15.50 6.31 37.01 2.67
543 682 2.469516 GCGGGCGGTCATACTTTGG 61.470 63.158 0.00 0.00 0.00 3.28
632 772 3.381949 GTTGACCGGTGAGCATATACTC 58.618 50.000 14.63 0.00 37.19 2.59
633 773 1.961394 TGACCGGTGAGCATATACTCC 59.039 52.381 14.63 0.00 35.72 3.85
637 777 3.162666 CCGGTGAGCATATACTCCCTTA 58.837 50.000 0.34 0.00 35.72 2.69
641 781 4.221041 GGTGAGCATATACTCCCTTAGGTC 59.779 50.000 0.34 0.00 35.72 3.85
651 791 5.758790 ACTCCCTTAGGTCCTTTTTACTC 57.241 43.478 0.00 0.00 0.00 2.59
670 816 8.958119 TTTACTCCGCATATTAGATTTGAGTT 57.042 30.769 0.00 0.00 34.07 3.01
800 950 6.783892 ATTTGGCATTGTGAATGTTTGTAC 57.216 33.333 0.00 0.00 41.01 2.90
900 1052 2.462723 GAGTATCAGCTATCCCCTCCC 58.537 57.143 0.00 0.00 33.17 4.30
901 1053 1.187087 GTATCAGCTATCCCCTCCCG 58.813 60.000 0.00 0.00 0.00 5.14
902 1054 0.614979 TATCAGCTATCCCCTCCCGC 60.615 60.000 0.00 0.00 0.00 6.13
932 1084 1.405821 AGTACAAATCTCCTCGGCTCG 59.594 52.381 0.00 0.00 0.00 5.03
944 1096 4.357947 GGCTCGTCCACAGCGTCA 62.358 66.667 0.00 0.00 37.81 4.35
945 1097 2.807045 GCTCGTCCACAGCGTCAG 60.807 66.667 0.00 0.00 0.00 3.51
946 1098 2.126307 CTCGTCCACAGCGTCAGG 60.126 66.667 0.00 0.00 0.00 3.86
1037 1191 5.123979 CCACCTCATGCTTTACTTTCCTAAC 59.876 44.000 0.00 0.00 0.00 2.34
1120 1274 4.570663 CCGCCGCCTTCCTAGACG 62.571 72.222 0.00 0.00 0.00 4.18
1363 6487 2.754658 CCACGACCTACTCCGGCT 60.755 66.667 0.00 0.00 0.00 5.52
1447 6571 1.893919 TTCCATCACCATCGCCGTCA 61.894 55.000 0.00 0.00 0.00 4.35
1521 6648 4.247380 CTGATGGGCGGGCTCTCC 62.247 72.222 0.26 0.00 0.00 3.71
1584 6711 2.291930 CCTCACCTCCCTCTACTTCACT 60.292 54.545 0.00 0.00 0.00 3.41
1807 6937 2.434884 GCTTGTGCTCGCTGGCTA 60.435 61.111 0.00 0.00 36.03 3.93
1928 11092 7.767198 TGCCTTGTGGTTATGTTAGATACTTAC 59.233 37.037 0.00 0.00 35.27 2.34
1929 11093 7.985752 GCCTTGTGGTTATGTTAGATACTTACT 59.014 37.037 0.00 0.00 35.27 2.24
1930 11094 9.530633 CCTTGTGGTTATGTTAGATACTTACTC 57.469 37.037 0.00 0.00 0.00 2.59
1932 11096 8.015185 TGTGGTTATGTTAGATACTTACTCCC 57.985 38.462 0.00 0.00 0.00 4.30
1933 11097 7.842743 TGTGGTTATGTTAGATACTTACTCCCT 59.157 37.037 0.00 0.00 0.00 4.20
1934 11098 8.358895 GTGGTTATGTTAGATACTTACTCCCTC 58.641 40.741 0.00 0.00 0.00 4.30
1935 11099 7.508296 TGGTTATGTTAGATACTTACTCCCTCC 59.492 40.741 0.00 0.00 0.00 4.30
1936 11100 7.309073 GGTTATGTTAGATACTTACTCCCTCCG 60.309 44.444 0.00 0.00 0.00 4.63
1937 11101 5.121380 TGTTAGATACTTACTCCCTCCGT 57.879 43.478 0.00 0.00 0.00 4.69
1938 11102 5.513233 TGTTAGATACTTACTCCCTCCGTT 58.487 41.667 0.00 0.00 0.00 4.44
1939 11103 5.591877 TGTTAGATACTTACTCCCTCCGTTC 59.408 44.000 0.00 0.00 0.00 3.95
1940 11104 4.523168 AGATACTTACTCCCTCCGTTCT 57.477 45.455 0.00 0.00 0.00 3.01
1941 11105 5.643421 AGATACTTACTCCCTCCGTTCTA 57.357 43.478 0.00 0.00 0.00 2.10
1942 11106 6.011122 AGATACTTACTCCCTCCGTTCTAA 57.989 41.667 0.00 0.00 0.00 2.10
1943 11107 6.430007 AGATACTTACTCCCTCCGTTCTAAA 58.570 40.000 0.00 0.00 0.00 1.85
1944 11108 6.894103 AGATACTTACTCCCTCCGTTCTAAAA 59.106 38.462 0.00 0.00 0.00 1.52
1945 11109 7.564292 AGATACTTACTCCCTCCGTTCTAAAAT 59.436 37.037 0.00 0.00 0.00 1.82
1946 11110 8.773033 ATACTTACTCCCTCCGTTCTAAAATA 57.227 34.615 0.00 0.00 0.00 1.40
1947 11111 7.110043 ACTTACTCCCTCCGTTCTAAAATAG 57.890 40.000 0.00 0.00 0.00 1.73
1948 11112 6.894103 ACTTACTCCCTCCGTTCTAAAATAGA 59.106 38.462 0.00 0.00 0.00 1.98
1949 11113 7.564292 ACTTACTCCCTCCGTTCTAAAATAGAT 59.436 37.037 0.00 0.00 34.22 1.98
1950 11114 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
1951 11115 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
1952 11116 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
1953 11117 5.070047 TCCCTCCGTTCTAAAATAGATGACC 59.930 44.000 0.00 0.00 34.22 4.02
1954 11118 5.298347 CCTCCGTTCTAAAATAGATGACCC 58.702 45.833 0.00 0.00 34.22 4.46
1955 11119 5.163343 CCTCCGTTCTAAAATAGATGACCCA 60.163 44.000 0.00 0.00 34.22 4.51
1956 11120 6.302535 TCCGTTCTAAAATAGATGACCCAA 57.697 37.500 0.00 0.00 34.22 4.12
1957 11121 6.895782 TCCGTTCTAAAATAGATGACCCAAT 58.104 36.000 0.00 0.00 34.22 3.16
1958 11122 7.343357 TCCGTTCTAAAATAGATGACCCAATT 58.657 34.615 0.00 0.00 34.22 2.32
1959 11123 7.832187 TCCGTTCTAAAATAGATGACCCAATTT 59.168 33.333 0.00 0.00 34.22 1.82
1960 11124 8.466798 CCGTTCTAAAATAGATGACCCAATTTT 58.533 33.333 0.00 0.00 36.04 1.82
2001 11165 9.227777 ACAAAGTTAGTATAAAGTTGGGTCATC 57.772 33.333 0.00 0.00 0.00 2.92
2002 11166 9.449719 CAAAGTTAGTATAAAGTTGGGTCATCT 57.550 33.333 0.00 0.00 0.00 2.90
2009 11173 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
2010 11174 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
2011 11175 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
2012 11176 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2013 11177 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2014 11178 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2015 11179 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2016 11180 4.263550 TGGGTCATCTATTTTGGAACGGAA 60.264 41.667 0.00 0.00 0.00 4.30
2017 11181 4.335594 GGGTCATCTATTTTGGAACGGAAG 59.664 45.833 0.00 0.00 0.00 3.46
2018 11182 4.335594 GGTCATCTATTTTGGAACGGAAGG 59.664 45.833 0.00 0.00 0.00 3.46
2019 11183 5.183228 GTCATCTATTTTGGAACGGAAGGA 58.817 41.667 0.00 0.00 0.00 3.36
2020 11184 5.294552 GTCATCTATTTTGGAACGGAAGGAG 59.705 44.000 0.00 0.00 0.00 3.69
2021 11185 4.903045 TCTATTTTGGAACGGAAGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
2022 11186 6.155565 TCATCTATTTTGGAACGGAAGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
2023 11187 5.974108 TCTATTTTGGAACGGAAGGAGTAG 58.026 41.667 0.00 0.00 0.00 2.57
2024 11188 4.903045 ATTTTGGAACGGAAGGAGTAGA 57.097 40.909 0.00 0.00 0.00 2.59
2025 11189 4.903045 TTTTGGAACGGAAGGAGTAGAT 57.097 40.909 0.00 0.00 0.00 1.98
2026 11190 4.467198 TTTGGAACGGAAGGAGTAGATC 57.533 45.455 0.00 0.00 0.00 2.75
2027 11191 3.095912 TGGAACGGAAGGAGTAGATCA 57.904 47.619 0.00 0.00 0.00 2.92
2028 11192 2.758979 TGGAACGGAAGGAGTAGATCAC 59.241 50.000 0.00 0.00 0.00 3.06
2149 11314 4.222124 TGCTAGAGGGGTCTTTGATTTC 57.778 45.455 0.00 0.00 0.00 2.17
2162 11327 4.213270 TCTTTGATTTCTCGTGCGACAATT 59.787 37.500 0.00 0.00 0.00 2.32
2164 11329 3.809234 TGATTTCTCGTGCGACAATTTG 58.191 40.909 0.00 0.00 0.00 2.32
2165 11330 3.249799 TGATTTCTCGTGCGACAATTTGT 59.750 39.130 0.63 0.63 0.00 2.83
2167 11332 3.781341 TTCTCGTGCGACAATTTGTAC 57.219 42.857 1.15 0.00 0.00 2.90
2176 11341 6.423862 GTGCGACAATTTGTACTGTCTTTTA 58.576 36.000 1.15 0.00 39.87 1.52
2229 11395 6.070995 ACTCCCTCGTATCAAAATACAAGACA 60.071 38.462 0.00 0.00 38.11 3.41
2311 11477 7.705325 ACACTACATCAAAGAATATACGTCACC 59.295 37.037 0.00 0.00 0.00 4.02
2313 11479 5.898174 ACATCAAAGAATATACGTCACCGA 58.102 37.500 0.00 0.00 37.88 4.69
2335 11503 4.168760 AGTATAAAGTTGTACGCCGTGTC 58.831 43.478 0.00 0.00 31.09 3.67
2342 11510 1.203313 GTACGCCGTGTCAAAGCAC 59.797 57.895 0.00 0.00 36.12 4.40
2354 11522 0.877071 CAAAGCACGAGTTCATGGCT 59.123 50.000 0.00 0.00 36.13 4.75
2355 11523 1.267806 CAAAGCACGAGTTCATGGCTT 59.732 47.619 0.00 0.00 45.92 4.35
2356 11524 2.472695 AAGCACGAGTTCATGGCTTA 57.527 45.000 1.84 0.00 42.51 3.09
2357 11525 2.698855 AGCACGAGTTCATGGCTTAT 57.301 45.000 0.00 0.00 0.00 1.73
2358 11526 2.991250 AGCACGAGTTCATGGCTTATT 58.009 42.857 0.00 0.00 0.00 1.40
2359 11527 3.347216 AGCACGAGTTCATGGCTTATTT 58.653 40.909 0.00 0.00 0.00 1.40
2360 11528 3.127548 AGCACGAGTTCATGGCTTATTTG 59.872 43.478 0.00 0.00 0.00 2.32
2361 11529 3.429085 CACGAGTTCATGGCTTATTTGC 58.571 45.455 0.00 0.00 0.00 3.68
2362 11530 3.081061 ACGAGTTCATGGCTTATTTGCA 58.919 40.909 0.00 0.00 34.04 4.08
2363 11531 3.696051 ACGAGTTCATGGCTTATTTGCAT 59.304 39.130 0.00 0.00 34.04 3.96
2364 11532 4.881273 ACGAGTTCATGGCTTATTTGCATA 59.119 37.500 0.00 0.00 34.04 3.14
2365 11533 5.532406 ACGAGTTCATGGCTTATTTGCATAT 59.468 36.000 0.00 0.00 34.04 1.78
2366 11534 6.710295 ACGAGTTCATGGCTTATTTGCATATA 59.290 34.615 0.00 0.00 34.04 0.86
2367 11535 7.228507 ACGAGTTCATGGCTTATTTGCATATAA 59.771 33.333 8.95 8.95 34.04 0.98
2368 11536 7.747799 CGAGTTCATGGCTTATTTGCATATAAG 59.252 37.037 24.47 24.47 39.84 1.73
2382 11550 9.884636 ATTTGCATATAAGCCGAGTATATACAA 57.115 29.630 15.18 0.00 30.50 2.41
2383 11551 8.697846 TTGCATATAAGCCGAGTATATACAAC 57.302 34.615 15.18 7.64 28.71 3.32
2384 11552 7.832769 TGCATATAAGCCGAGTATATACAACA 58.167 34.615 15.18 0.00 0.00 3.33
2385 11553 7.973944 TGCATATAAGCCGAGTATATACAACAG 59.026 37.037 15.18 2.97 0.00 3.16
2386 11554 7.435488 GCATATAAGCCGAGTATATACAACAGG 59.565 40.741 15.18 12.12 0.00 4.00
2387 11555 8.683615 CATATAAGCCGAGTATATACAACAGGA 58.316 37.037 15.18 0.00 0.00 3.86
2388 11556 4.850347 AGCCGAGTATATACAACAGGAC 57.150 45.455 15.18 8.27 0.00 3.85
2400 11568 4.637483 ACAACAGGACACATGACAAAAG 57.363 40.909 0.00 0.00 0.00 2.27
2427 11595 4.546829 ACCACTCGGCTTATTTCTACAA 57.453 40.909 0.00 0.00 34.57 2.41
2432 11600 5.122396 CACTCGGCTTATTTCTACAAAAGCT 59.878 40.000 5.95 0.00 43.04 3.74
2434 11602 4.098416 CGGCTTATTTCTACAAAAGCTGC 58.902 43.478 5.95 0.00 42.52 5.25
2440 11608 8.348507 GCTTATTTCTACAAAAGCTGCATATCT 58.651 33.333 1.02 0.00 40.87 1.98
2456 11624 6.150738 GCATATCTGCTAAGAAGACATTCG 57.849 41.667 0.00 0.00 45.32 3.34
2457 11625 5.119898 GCATATCTGCTAAGAAGACATTCGG 59.880 44.000 0.00 0.00 45.32 4.30
2458 11626 2.893637 TCTGCTAAGAAGACATTCGGC 58.106 47.619 0.00 0.00 40.58 5.54
2459 11627 2.497675 TCTGCTAAGAAGACATTCGGCT 59.502 45.455 0.00 0.00 40.58 5.52
2460 11628 3.055819 TCTGCTAAGAAGACATTCGGCTT 60.056 43.478 0.00 0.00 40.58 4.35
2461 11629 4.159693 TCTGCTAAGAAGACATTCGGCTTA 59.840 41.667 0.00 0.00 40.58 3.09
2462 11630 5.023533 TGCTAAGAAGACATTCGGCTTAT 57.976 39.130 0.00 0.00 40.58 1.73
2463 11631 6.040504 TCTGCTAAGAAGACATTCGGCTTATA 59.959 38.462 0.00 0.00 40.58 0.98
2464 11632 6.759272 TGCTAAGAAGACATTCGGCTTATAT 58.241 36.000 0.00 0.00 40.58 0.86
2465 11633 7.892609 TGCTAAGAAGACATTCGGCTTATATA 58.107 34.615 0.00 0.00 40.58 0.86
2466 11634 8.364894 TGCTAAGAAGACATTCGGCTTATATAA 58.635 33.333 0.00 0.00 40.58 0.98
2467 11635 9.372369 GCTAAGAAGACATTCGGCTTATATAAT 57.628 33.333 0.00 0.00 40.58 1.28
2514 11682 3.790212 GTGAGGCTCACGAAAAAGTAC 57.210 47.619 29.91 5.31 37.67 2.73
2515 11683 3.391049 GTGAGGCTCACGAAAAAGTACT 58.609 45.455 29.91 0.00 37.67 2.73
2516 11684 3.429207 GTGAGGCTCACGAAAAAGTACTC 59.571 47.826 29.91 4.57 37.67 2.59
2517 11685 2.662156 GAGGCTCACGAAAAAGTACTCG 59.338 50.000 10.25 0.00 40.87 4.18
2518 11686 2.295349 AGGCTCACGAAAAAGTACTCGA 59.705 45.455 8.99 0.00 38.43 4.04
2519 11687 2.407696 GGCTCACGAAAAAGTACTCGAC 59.592 50.000 8.99 0.00 38.43 4.20
2520 11688 3.306818 GCTCACGAAAAAGTACTCGACT 58.693 45.455 8.99 0.00 41.56 4.18
2535 11703 6.965500 AGTACTCGACTTATTGAACATACACG 59.035 38.462 0.00 0.00 33.13 4.49
2536 11704 5.100259 ACTCGACTTATTGAACATACACGG 58.900 41.667 0.00 0.00 0.00 4.94
2537 11705 3.861113 TCGACTTATTGAACATACACGGC 59.139 43.478 0.00 0.00 0.00 5.68
2538 11706 3.615056 CGACTTATTGAACATACACGGCA 59.385 43.478 0.00 0.00 0.00 5.69
2539 11707 4.092237 CGACTTATTGAACATACACGGCAA 59.908 41.667 0.00 0.00 0.00 4.52
2540 11708 5.390040 CGACTTATTGAACATACACGGCAAA 60.390 40.000 0.00 0.00 0.00 3.68
2541 11709 5.695818 ACTTATTGAACATACACGGCAAAC 58.304 37.500 0.00 0.00 0.00 2.93
2551 11719 3.347405 CGGCAAACGTAACCGCCA 61.347 61.111 15.15 0.00 45.14 5.69
2552 11720 2.894565 CGGCAAACGTAACCGCCAA 61.895 57.895 15.15 0.00 45.14 4.52
2553 11721 1.582461 GGCAAACGTAACCGCCAAT 59.418 52.632 11.34 0.00 44.25 3.16
2554 11722 0.038983 GGCAAACGTAACCGCCAATT 60.039 50.000 11.34 0.00 44.25 2.32
2555 11723 1.056869 GCAAACGTAACCGCCAATTG 58.943 50.000 0.00 0.00 37.70 2.32
2556 11724 1.335142 GCAAACGTAACCGCCAATTGA 60.335 47.619 7.12 0.00 37.70 2.57
2557 11725 2.580589 CAAACGTAACCGCCAATTGAG 58.419 47.619 7.12 0.18 37.70 3.02
2558 11726 1.161843 AACGTAACCGCCAATTGAGG 58.838 50.000 7.12 12.34 37.70 3.86
2566 11734 4.798288 CCAATTGAGGCATGCGTG 57.202 55.556 19.15 0.09 0.00 5.34
2576 11744 2.125713 CATGCGTGCCGTCCACTA 60.126 61.111 0.00 0.00 42.42 2.74
2577 11745 1.739929 CATGCGTGCCGTCCACTAA 60.740 57.895 0.00 0.00 42.42 2.24
2578 11746 1.740296 ATGCGTGCCGTCCACTAAC 60.740 57.895 2.59 0.00 42.42 2.34
2579 11747 3.475774 GCGTGCCGTCCACTAACG 61.476 66.667 2.59 0.00 42.42 3.18
2585 11753 2.967397 CGTCCACTAACGGCTCCA 59.033 61.111 0.00 0.00 38.96 3.86
2586 11754 1.515954 CGTCCACTAACGGCTCCAT 59.484 57.895 0.00 0.00 38.96 3.41
2587 11755 0.806102 CGTCCACTAACGGCTCCATG 60.806 60.000 0.00 0.00 38.96 3.66
2588 11756 0.535335 GTCCACTAACGGCTCCATGA 59.465 55.000 0.00 0.00 0.00 3.07
2589 11757 0.535335 TCCACTAACGGCTCCATGAC 59.465 55.000 0.00 0.00 0.00 3.06
2595 11763 4.082523 CGGCTCCATGACGGTGGT 62.083 66.667 0.00 0.00 44.96 4.16
2596 11764 2.436646 GGCTCCATGACGGTGGTG 60.437 66.667 0.00 3.31 40.27 4.17
2597 11765 2.436646 GCTCCATGACGGTGGTGG 60.437 66.667 0.00 2.73 40.27 4.61
2598 11766 2.436646 CTCCATGACGGTGGTGGC 60.437 66.667 0.00 0.00 40.27 5.01
2599 11767 2.927856 TCCATGACGGTGGTGGCT 60.928 61.111 0.00 0.00 40.27 4.75
2600 11768 1.610967 TCCATGACGGTGGTGGCTA 60.611 57.895 0.00 0.00 40.27 3.93
2601 11769 0.980754 TCCATGACGGTGGTGGCTAT 60.981 55.000 0.00 0.00 40.27 2.97
2614 11782 4.363034 GCTATAAGCCGAGCACCC 57.637 61.111 0.00 0.00 38.62 4.61
2627 11795 1.065551 GAGCACCCGATAAATTGCACC 59.934 52.381 0.00 0.00 37.44 5.01
2748 11922 8.103305 TCAGTCATTCTGTCTAGGCTAATTTTT 58.897 33.333 0.00 0.00 43.97 1.94
2750 11924 9.959721 AGTCATTCTGTCTAGGCTAATTTTTAA 57.040 29.630 0.00 0.00 0.00 1.52
2756 11930 5.353123 TGTCTAGGCTAATTTTTAAGGCACG 59.647 40.000 0.00 0.00 40.56 5.34
2776 11950 2.213499 GTTCGATCCCATTTCATCGCT 58.787 47.619 0.00 0.00 41.41 4.93
2777 11951 3.390135 GTTCGATCCCATTTCATCGCTA 58.610 45.455 0.00 0.00 41.41 4.26
2789 11963 8.037758 CCCATTTCATCGCTATTAGAATAGTCT 58.962 37.037 10.27 0.00 40.37 3.24
2800 11974 6.811253 ATTAGAATAGTCTGAGAGGCGTAG 57.189 41.667 2.23 0.00 35.12 3.51
2830 12004 4.062991 ACCGAGGACTAAAACAATCACAC 58.937 43.478 0.00 0.00 0.00 3.82
2834 12008 3.746492 AGGACTAAAACAATCACACGAGC 59.254 43.478 0.00 0.00 0.00 5.03
2841 12015 0.161658 CAATCACACGAGCACGACAC 59.838 55.000 11.40 0.00 42.66 3.67
2861 12035 3.122948 CACCGAGATTGTTAACGAGGTTG 59.877 47.826 1.30 0.00 0.00 3.77
2882 12056 1.511305 CGATCCGGATACATCCCCG 59.489 63.158 19.15 11.11 44.24 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.586792 GCGGCCTCAGACTGGATT 59.413 61.111 0.00 0.00 0.00 3.01
18 19 3.842923 CGCGGCCTCAGACTGGAT 61.843 66.667 0.00 0.00 0.00 3.41
49 50 4.158394 CGACCATGTCCTGAATTTCCAAAT 59.842 41.667 0.00 0.00 0.00 2.32
82 86 2.093128 TCCTCAAGAAAACCCTATCGCC 60.093 50.000 0.00 0.00 0.00 5.54
98 102 0.249197 CAGCGATCGAAGCATCCTCA 60.249 55.000 21.57 0.00 37.01 3.86
99 103 1.555741 GCAGCGATCGAAGCATCCTC 61.556 60.000 21.57 0.00 37.01 3.71
153 157 5.046663 GGCCATTAAACCATCTTCCTTTGAA 60.047 40.000 0.00 0.00 0.00 2.69
154 158 4.466015 GGCCATTAAACCATCTTCCTTTGA 59.534 41.667 0.00 0.00 0.00 2.69
158 162 3.269381 TCAGGCCATTAAACCATCTTCCT 59.731 43.478 5.01 0.00 0.00 3.36
159 163 3.631250 TCAGGCCATTAAACCATCTTCC 58.369 45.455 5.01 0.00 0.00 3.46
160 164 3.067320 GCTCAGGCCATTAAACCATCTTC 59.933 47.826 5.01 0.00 0.00 2.87
161 165 3.026694 GCTCAGGCCATTAAACCATCTT 58.973 45.455 5.01 0.00 0.00 2.40
162 166 2.243221 AGCTCAGGCCATTAAACCATCT 59.757 45.455 5.01 0.00 39.73 2.90
194 328 2.030946 GTGGCCAAGAGAAAATCGATCG 59.969 50.000 7.24 9.36 0.00 3.69
196 330 3.071874 TGTGGCCAAGAGAAAATCGAT 57.928 42.857 7.24 0.00 0.00 3.59
197 331 2.552315 GTTGTGGCCAAGAGAAAATCGA 59.448 45.455 7.24 0.00 0.00 3.59
198 332 2.665519 CGTTGTGGCCAAGAGAAAATCG 60.666 50.000 7.24 0.00 0.00 3.34
199 333 2.552315 TCGTTGTGGCCAAGAGAAAATC 59.448 45.455 7.24 0.00 0.00 2.17
200 334 2.293399 GTCGTTGTGGCCAAGAGAAAAT 59.707 45.455 7.24 0.00 0.00 1.82
206 340 1.885388 CACGTCGTTGTGGCCAAGA 60.885 57.895 7.24 1.51 36.20 3.02
227 361 4.451435 CCGAGGAAGAGTTGGAAAAGTAAC 59.549 45.833 0.00 0.00 0.00 2.50
228 362 4.102054 ACCGAGGAAGAGTTGGAAAAGTAA 59.898 41.667 0.00 0.00 0.00 2.24
229 363 3.644738 ACCGAGGAAGAGTTGGAAAAGTA 59.355 43.478 0.00 0.00 0.00 2.24
230 364 2.438392 ACCGAGGAAGAGTTGGAAAAGT 59.562 45.455 0.00 0.00 0.00 2.66
231 365 3.127425 ACCGAGGAAGAGTTGGAAAAG 57.873 47.619 0.00 0.00 0.00 2.27
232 366 3.118186 TCAACCGAGGAAGAGTTGGAAAA 60.118 43.478 0.00 0.00 40.96 2.29
233 367 2.436542 TCAACCGAGGAAGAGTTGGAAA 59.563 45.455 0.00 0.00 40.96 3.13
234 368 2.043992 TCAACCGAGGAAGAGTTGGAA 58.956 47.619 0.00 0.00 40.96 3.53
235 369 1.343465 GTCAACCGAGGAAGAGTTGGA 59.657 52.381 0.00 0.00 40.96 3.53
236 370 1.608283 GGTCAACCGAGGAAGAGTTGG 60.608 57.143 0.00 0.00 40.96 3.77
237 371 1.797025 GGTCAACCGAGGAAGAGTTG 58.203 55.000 0.00 0.00 41.75 3.16
258 392 6.382869 AATGGCTGATACTTATTTGCTCAC 57.617 37.500 0.00 0.00 0.00 3.51
267 401 3.394606 GGGGAGGAAATGGCTGATACTTA 59.605 47.826 0.00 0.00 0.00 2.24
268 402 2.175715 GGGGAGGAAATGGCTGATACTT 59.824 50.000 0.00 0.00 0.00 2.24
269 403 1.777272 GGGGAGGAAATGGCTGATACT 59.223 52.381 0.00 0.00 0.00 2.12
270 404 1.202940 GGGGGAGGAAATGGCTGATAC 60.203 57.143 0.00 0.00 0.00 2.24
303 437 5.126061 ACAATGTTATTTGAGGATGGACTGC 59.874 40.000 0.00 0.00 0.00 4.40
335 469 2.040544 CGCCGGCCTCAAGATTTGT 61.041 57.895 23.46 0.00 0.00 2.83
365 499 1.883084 CGGCACCGCTGGACTAATC 60.883 63.158 0.00 0.00 0.00 1.75
380 514 1.194772 GAAAACTAGTCTGCACACGGC 59.805 52.381 0.00 0.00 45.13 5.68
404 538 3.838244 ACTAGTTTCAGTCAGGTGCAA 57.162 42.857 0.00 0.00 0.00 4.08
407 541 6.334102 AGTCTAACTAGTTTCAGTCAGGTG 57.666 41.667 14.49 0.00 0.00 4.00
417 551 9.523168 AAGTGTCTCAGATAGTCTAACTAGTTT 57.477 33.333 14.49 0.00 33.66 2.66
431 565 6.925211 TCGTCTCAAAATAAGTGTCTCAGAT 58.075 36.000 0.00 0.00 0.00 2.90
432 566 6.206829 TCTCGTCTCAAAATAAGTGTCTCAGA 59.793 38.462 0.00 0.00 0.00 3.27
434 568 6.327279 TCTCGTCTCAAAATAAGTGTCTCA 57.673 37.500 0.00 0.00 0.00 3.27
442 576 8.749026 AGTATACTCCTCTCGTCTCAAAATAA 57.251 34.615 0.00 0.00 0.00 1.40
469 603 9.357161 ACAGATTACCTTTGGTGTTTGTTATTA 57.643 29.630 0.00 0.00 36.19 0.98
470 604 8.245195 ACAGATTACCTTTGGTGTTTGTTATT 57.755 30.769 0.00 0.00 36.19 1.40
471 605 7.833285 ACAGATTACCTTTGGTGTTTGTTAT 57.167 32.000 0.00 0.00 36.19 1.89
472 606 7.774157 TGTACAGATTACCTTTGGTGTTTGTTA 59.226 33.333 0.00 0.00 36.19 2.41
473 607 6.603997 TGTACAGATTACCTTTGGTGTTTGTT 59.396 34.615 0.00 0.00 36.19 2.83
474 608 6.123651 TGTACAGATTACCTTTGGTGTTTGT 58.876 36.000 0.00 3.22 36.19 2.83
475 609 6.627395 TGTACAGATTACCTTTGGTGTTTG 57.373 37.500 0.00 0.00 36.19 2.93
485 619 6.183360 GCAGCAATCATTTGTACAGATTACCT 60.183 38.462 8.13 5.96 35.17 3.08
486 620 5.973565 GCAGCAATCATTTGTACAGATTACC 59.026 40.000 8.13 4.26 35.17 2.85
487 621 6.554419 TGCAGCAATCATTTGTACAGATTAC 58.446 36.000 8.13 4.17 35.17 1.89
500 638 3.101437 TGGAGGAAATTGCAGCAATCAT 58.899 40.909 21.10 13.01 32.43 2.45
503 641 1.551883 GGTGGAGGAAATTGCAGCAAT 59.448 47.619 15.33 15.33 36.96 3.56
506 644 1.508088 CGGTGGAGGAAATTGCAGC 59.492 57.895 0.00 0.00 34.15 5.25
535 674 7.189079 TGGAAAACCAAAAGAACCAAAGTAT 57.811 32.000 0.00 0.00 0.00 2.12
543 682 5.810587 GGAAGACTTGGAAAACCAAAAGAAC 59.189 40.000 0.00 0.00 0.00 3.01
582 722 6.183360 GGAAGAGTTGAAAAAGAAACGGTACA 60.183 38.462 0.00 0.00 0.00 2.90
632 772 3.870274 CGGAGTAAAAAGGACCTAAGGG 58.130 50.000 0.00 0.00 38.88 3.95
633 773 3.268330 GCGGAGTAAAAAGGACCTAAGG 58.732 50.000 0.00 0.00 0.00 2.69
637 777 4.772886 ATATGCGGAGTAAAAAGGACCT 57.227 40.909 0.00 0.00 0.00 3.85
641 781 8.836413 TCAAATCTAATATGCGGAGTAAAAAGG 58.164 33.333 0.00 0.00 0.00 3.11
651 791 8.365399 TGACTTAACTCAAATCTAATATGCGG 57.635 34.615 0.00 0.00 0.00 5.69
739 889 9.180678 GATTCGTTAAGAAATGTTGTTTCATGT 57.819 29.630 3.68 0.00 42.91 3.21
760 910 8.633075 ATGCCAAATTAACATTGTTAGATTCG 57.367 30.769 9.10 3.87 0.00 3.34
773 923 7.638134 ACAAACATTCACAATGCCAAATTAAC 58.362 30.769 0.00 0.00 42.69 2.01
777 927 6.523840 AGTACAAACATTCACAATGCCAAAT 58.476 32.000 0.00 0.00 42.69 2.32
782 932 8.130307 AGAAAAAGTACAAACATTCACAATGC 57.870 30.769 0.00 0.00 42.69 3.56
856 1008 7.056006 TCCCTCCGGTCCTTTTTAATTTATAC 58.944 38.462 0.00 0.00 0.00 1.47
857 1009 7.092309 ACTCCCTCCGGTCCTTTTTAATTTATA 60.092 37.037 0.00 0.00 0.00 0.98
858 1010 6.082228 TCCCTCCGGTCCTTTTTAATTTAT 57.918 37.500 0.00 0.00 0.00 1.40
859 1011 5.014438 ACTCCCTCCGGTCCTTTTTAATTTA 59.986 40.000 0.00 0.00 0.00 1.40
863 1015 2.341695 ACTCCCTCCGGTCCTTTTTAA 58.658 47.619 0.00 0.00 0.00 1.52
873 1025 2.096248 GATAGCTGATACTCCCTCCGG 58.904 57.143 0.00 0.00 0.00 5.14
875 1027 2.462723 GGGATAGCTGATACTCCCTCC 58.537 57.143 0.00 0.00 43.45 4.30
880 1032 2.462723 GGGAGGGGATAGCTGATACTC 58.537 57.143 0.00 0.00 0.00 2.59
900 1052 0.320596 TTTGTACTACGTTGGGGGCG 60.321 55.000 0.00 0.00 0.00 6.13
901 1053 2.011947 GATTTGTACTACGTTGGGGGC 58.988 52.381 0.00 0.00 0.00 5.80
902 1054 3.528532 GAGATTTGTACTACGTTGGGGG 58.471 50.000 0.00 0.00 0.00 5.40
932 1084 2.740055 CTGCCTGACGCTGTGGAC 60.740 66.667 0.00 0.00 38.78 4.02
943 1095 2.124403 GGATGGACTGCCTGCCTG 60.124 66.667 0.00 0.00 34.31 4.85
944 1096 2.285969 AGGATGGACTGCCTGCCT 60.286 61.111 0.00 0.00 34.80 4.75
945 1097 2.191641 GAGGATGGACTGCCTGCC 59.808 66.667 0.00 0.00 33.84 4.85
946 1098 1.028868 GTTGAGGATGGACTGCCTGC 61.029 60.000 0.00 0.00 33.84 4.85
1046 1200 1.648504 GTTTAACGTGGGGAGGATCG 58.351 55.000 0.00 0.00 34.37 3.69
1116 1270 3.252701 ACACGAAACTGACTATGTCGTCT 59.747 43.478 0.00 0.00 42.63 4.18
1120 1274 3.979495 ACGAACACGAAACTGACTATGTC 59.021 43.478 0.00 0.00 0.00 3.06
1447 6571 2.152699 CGAAGTCAAGCGCGTCGAT 61.153 57.895 8.43 0.00 39.48 3.59
1537 6664 2.657143 GATGAGGTAGACGAGACCCTT 58.343 52.381 0.00 0.00 37.73 3.95
1807 6937 2.230508 CACAGGACAGAAAAGCATGCAT 59.769 45.455 21.98 4.57 0.00 3.96
1928 11092 6.217294 GTCATCTATTTTAGAACGGAGGGAG 58.783 44.000 0.00 0.00 38.50 4.30
1929 11093 5.070047 GGTCATCTATTTTAGAACGGAGGGA 59.930 44.000 0.00 0.00 38.50 4.20
1930 11094 5.298347 GGTCATCTATTTTAGAACGGAGGG 58.702 45.833 0.00 0.00 38.50 4.30
1932 11096 5.914033 TGGGTCATCTATTTTAGAACGGAG 58.086 41.667 0.00 0.00 38.50 4.63
1933 11097 5.943349 TGGGTCATCTATTTTAGAACGGA 57.057 39.130 0.00 0.00 38.50 4.69
1934 11098 7.568199 AATTGGGTCATCTATTTTAGAACGG 57.432 36.000 0.00 0.00 38.50 4.44
1975 11139 9.227777 GATGACCCAACTTTATACTAACTTTGT 57.772 33.333 0.00 0.00 0.00 2.83
1976 11140 9.449719 AGATGACCCAACTTTATACTAACTTTG 57.550 33.333 0.00 0.00 0.00 2.77
1983 11147 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
1984 11148 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
1985 11149 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
1986 11150 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
1987 11151 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
1988 11152 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
1989 11153 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
1990 11154 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
1991 11155 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1992 11156 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1993 11157 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
1994 11158 3.881220 TCCGTTCCAAAATAGATGACCC 58.119 45.455 0.00 0.00 0.00 4.46
1995 11159 4.335594 CCTTCCGTTCCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
1996 11160 5.183228 TCCTTCCGTTCCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
1997 11161 5.045869 ACTCCTTCCGTTCCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
1998 11162 5.186198 ACTCCTTCCGTTCCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
1999 11163 5.437191 ACTCCTTCCGTTCCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
2000 11164 4.903045 ACTCCTTCCGTTCCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
2001 11165 5.974108 TCTACTCCTTCCGTTCCAAAATAG 58.026 41.667 0.00 0.00 0.00 1.73
2002 11166 6.155565 TGATCTACTCCTTCCGTTCCAAAATA 59.844 38.462 0.00 0.00 0.00 1.40
2003 11167 4.903045 TCTACTCCTTCCGTTCCAAAAT 57.097 40.909 0.00 0.00 0.00 1.82
2004 11168 4.285003 TGATCTACTCCTTCCGTTCCAAAA 59.715 41.667 0.00 0.00 0.00 2.44
2005 11169 3.835978 TGATCTACTCCTTCCGTTCCAAA 59.164 43.478 0.00 0.00 0.00 3.28
2006 11170 3.194968 GTGATCTACTCCTTCCGTTCCAA 59.805 47.826 0.00 0.00 0.00 3.53
2007 11171 2.758979 GTGATCTACTCCTTCCGTTCCA 59.241 50.000 0.00 0.00 0.00 3.53
2008 11172 2.758979 TGTGATCTACTCCTTCCGTTCC 59.241 50.000 0.00 0.00 0.00 3.62
2009 11173 4.657436 ATGTGATCTACTCCTTCCGTTC 57.343 45.455 0.00 0.00 0.00 3.95
2010 11174 4.141914 GGAATGTGATCTACTCCTTCCGTT 60.142 45.833 0.00 0.00 0.00 4.44
2011 11175 3.385111 GGAATGTGATCTACTCCTTCCGT 59.615 47.826 0.00 0.00 0.00 4.69
2012 11176 3.639094 AGGAATGTGATCTACTCCTTCCG 59.361 47.826 0.00 0.00 37.74 4.30
2013 11177 5.606505 GAAGGAATGTGATCTACTCCTTCC 58.393 45.833 20.59 15.88 43.35 3.46
2014 11178 5.285651 CGAAGGAATGTGATCTACTCCTTC 58.714 45.833 20.99 20.99 44.76 3.46
2015 11179 5.269505 CGAAGGAATGTGATCTACTCCTT 57.730 43.478 11.39 11.39 38.63 3.36
2016 11180 4.927978 CGAAGGAATGTGATCTACTCCT 57.072 45.455 0.00 0.00 0.00 3.69
2053 11217 4.008330 ACTTGATGAATGAGAGGCACTTG 58.992 43.478 0.00 0.00 41.55 3.16
2123 11288 7.633018 AATCAAAGACCCCTCTAGCATTATA 57.367 36.000 0.00 0.00 0.00 0.98
2149 11314 2.475111 ACAGTACAAATTGTCGCACGAG 59.525 45.455 0.22 0.00 0.00 4.18
2162 11327 7.390440 ACATTGCAGCTATAAAAGACAGTACAA 59.610 33.333 0.00 0.00 0.00 2.41
2164 11329 7.308782 ACATTGCAGCTATAAAAGACAGTAC 57.691 36.000 0.00 0.00 0.00 2.73
2167 11332 9.265901 AGTATACATTGCAGCTATAAAAGACAG 57.734 33.333 5.50 0.00 0.00 3.51
2176 11341 7.531857 ACTGACTAGTATACATTGCAGCTAT 57.468 36.000 5.50 0.00 34.74 2.97
2245 11411 8.592809 ACCAAAATATAAGACATTTTCAAGGCA 58.407 29.630 0.00 0.00 34.22 4.75
2280 11446 9.731819 CGTATATTCTTTGATGTAGTGTGTACT 57.268 33.333 0.00 0.00 40.99 2.73
2311 11477 3.239026 CACGGCGTACAACTTTATACTCG 59.761 47.826 14.22 0.00 0.00 4.18
2313 11479 4.168760 GACACGGCGTACAACTTTATACT 58.831 43.478 14.22 0.00 0.00 2.12
2335 11503 0.877071 AGCCATGAACTCGTGCTTTG 59.123 50.000 0.00 0.00 0.00 2.77
2342 11510 3.763097 TGCAAATAAGCCATGAACTCG 57.237 42.857 0.00 0.00 0.00 4.18
2356 11524 9.884636 TTGTATATACTCGGCTTATATGCAAAT 57.115 29.630 13.89 1.75 39.51 2.32
2357 11525 9.146984 GTTGTATATACTCGGCTTATATGCAAA 57.853 33.333 13.89 0.00 41.82 3.68
2358 11526 8.308207 TGTTGTATATACTCGGCTTATATGCAA 58.692 33.333 13.89 13.26 39.85 4.08
2359 11527 7.832769 TGTTGTATATACTCGGCTTATATGCA 58.167 34.615 13.89 0.00 34.56 3.96
2360 11528 7.435488 CCTGTTGTATATACTCGGCTTATATGC 59.565 40.741 13.89 2.01 0.00 3.14
2361 11529 8.683615 TCCTGTTGTATATACTCGGCTTATATG 58.316 37.037 13.89 0.13 0.00 1.78
2362 11530 8.684520 GTCCTGTTGTATATACTCGGCTTATAT 58.315 37.037 13.89 0.00 0.00 0.86
2363 11531 7.666804 TGTCCTGTTGTATATACTCGGCTTATA 59.333 37.037 13.89 0.00 0.00 0.98
2364 11532 6.492429 TGTCCTGTTGTATATACTCGGCTTAT 59.508 38.462 13.89 0.00 0.00 1.73
2365 11533 5.829391 TGTCCTGTTGTATATACTCGGCTTA 59.171 40.000 13.89 0.00 0.00 3.09
2366 11534 4.647853 TGTCCTGTTGTATATACTCGGCTT 59.352 41.667 13.89 0.00 0.00 4.35
2367 11535 4.037684 GTGTCCTGTTGTATATACTCGGCT 59.962 45.833 13.89 0.00 0.00 5.52
2368 11536 4.202080 TGTGTCCTGTTGTATATACTCGGC 60.202 45.833 13.89 2.85 0.00 5.54
2369 11537 5.509716 TGTGTCCTGTTGTATATACTCGG 57.490 43.478 13.89 11.10 0.00 4.63
2370 11538 6.637254 GTCATGTGTCCTGTTGTATATACTCG 59.363 42.308 13.89 0.54 0.00 4.18
2371 11539 7.489160 TGTCATGTGTCCTGTTGTATATACTC 58.511 38.462 13.89 7.80 0.00 2.59
2372 11540 7.418337 TGTCATGTGTCCTGTTGTATATACT 57.582 36.000 13.89 0.00 0.00 2.12
2373 11541 8.487313 TTTGTCATGTGTCCTGTTGTATATAC 57.513 34.615 5.89 5.89 0.00 1.47
2374 11542 9.161629 CTTTTGTCATGTGTCCTGTTGTATATA 57.838 33.333 0.00 0.00 0.00 0.86
2375 11543 7.882791 TCTTTTGTCATGTGTCCTGTTGTATAT 59.117 33.333 0.00 0.00 0.00 0.86
2376 11544 7.220740 TCTTTTGTCATGTGTCCTGTTGTATA 58.779 34.615 0.00 0.00 0.00 1.47
2377 11545 6.061441 TCTTTTGTCATGTGTCCTGTTGTAT 58.939 36.000 0.00 0.00 0.00 2.29
2378 11546 5.432645 TCTTTTGTCATGTGTCCTGTTGTA 58.567 37.500 0.00 0.00 0.00 2.41
2379 11547 4.269183 TCTTTTGTCATGTGTCCTGTTGT 58.731 39.130 0.00 0.00 0.00 3.32
2380 11548 4.898829 TCTTTTGTCATGTGTCCTGTTG 57.101 40.909 0.00 0.00 0.00 3.33
2381 11549 5.913137 TTTCTTTTGTCATGTGTCCTGTT 57.087 34.783 0.00 0.00 0.00 3.16
2382 11550 5.913137 TTTTCTTTTGTCATGTGTCCTGT 57.087 34.783 0.00 0.00 0.00 4.00
2419 11587 5.649395 AGCAGATATGCAGCTTTTGTAGAAA 59.351 36.000 15.82 0.00 35.63 2.52
2427 11595 5.526846 GTCTTCTTAGCAGATATGCAGCTTT 59.473 40.000 15.82 0.00 40.19 3.51
2432 11600 5.693555 CGAATGTCTTCTTAGCAGATATGCA 59.306 40.000 15.82 0.00 37.25 3.96
2434 11602 5.119898 GCCGAATGTCTTCTTAGCAGATATG 59.880 44.000 0.00 0.00 0.00 1.78
2440 11608 3.334583 AAGCCGAATGTCTTCTTAGCA 57.665 42.857 0.00 0.00 0.00 3.49
2494 11662 3.391049 AGTACTTTTTCGTGAGCCTCAC 58.609 45.455 14.98 14.98 43.65 3.51
2495 11663 3.650139 GAGTACTTTTTCGTGAGCCTCA 58.350 45.455 0.00 0.00 0.00 3.86
2496 11664 2.662156 CGAGTACTTTTTCGTGAGCCTC 59.338 50.000 0.00 0.00 32.44 4.70
2497 11665 2.295349 TCGAGTACTTTTTCGTGAGCCT 59.705 45.455 0.00 0.00 37.99 4.58
2498 11666 2.407696 GTCGAGTACTTTTTCGTGAGCC 59.592 50.000 0.00 0.00 37.99 4.70
2499 11667 3.306818 AGTCGAGTACTTTTTCGTGAGC 58.693 45.455 0.00 0.00 33.35 4.26
2500 11668 7.325338 TCAATAAGTCGAGTACTTTTTCGTGAG 59.675 37.037 0.00 0.00 46.61 3.51
2501 11669 7.140705 TCAATAAGTCGAGTACTTTTTCGTGA 58.859 34.615 0.00 0.00 46.61 4.35
2502 11670 7.329438 TCAATAAGTCGAGTACTTTTTCGTG 57.671 36.000 0.00 0.00 46.61 4.35
2503 11671 7.436080 TGTTCAATAAGTCGAGTACTTTTTCGT 59.564 33.333 0.00 0.00 46.61 3.85
2504 11672 7.780313 TGTTCAATAAGTCGAGTACTTTTTCG 58.220 34.615 0.00 0.00 46.61 3.46
2507 11675 9.701098 TGTATGTTCAATAAGTCGAGTACTTTT 57.299 29.630 0.00 0.00 46.61 2.27
2508 11676 9.136952 GTGTATGTTCAATAAGTCGAGTACTTT 57.863 33.333 0.00 0.00 46.61 2.66
2510 11678 6.965500 CGTGTATGTTCAATAAGTCGAGTACT 59.035 38.462 0.00 0.00 41.49 2.73
2511 11679 6.195983 CCGTGTATGTTCAATAAGTCGAGTAC 59.804 42.308 0.00 0.00 0.00 2.73
2512 11680 6.260377 CCGTGTATGTTCAATAAGTCGAGTA 58.740 40.000 0.00 0.00 0.00 2.59
2513 11681 5.100259 CCGTGTATGTTCAATAAGTCGAGT 58.900 41.667 0.00 0.00 0.00 4.18
2514 11682 4.026804 GCCGTGTATGTTCAATAAGTCGAG 60.027 45.833 0.00 0.00 0.00 4.04
2515 11683 3.861113 GCCGTGTATGTTCAATAAGTCGA 59.139 43.478 0.00 0.00 0.00 4.20
2516 11684 3.615056 TGCCGTGTATGTTCAATAAGTCG 59.385 43.478 0.00 0.00 0.00 4.18
2517 11685 5.539582 TTGCCGTGTATGTTCAATAAGTC 57.460 39.130 0.00 0.00 0.00 3.01
2518 11686 5.615984 CGTTTGCCGTGTATGTTCAATAAGT 60.616 40.000 0.00 0.00 0.00 2.24
2519 11687 4.786068 CGTTTGCCGTGTATGTTCAATAAG 59.214 41.667 0.00 0.00 0.00 1.73
2520 11688 4.713806 CGTTTGCCGTGTATGTTCAATAA 58.286 39.130 0.00 0.00 0.00 1.40
2521 11689 4.329296 CGTTTGCCGTGTATGTTCAATA 57.671 40.909 0.00 0.00 0.00 1.90
2522 11690 3.196007 CGTTTGCCGTGTATGTTCAAT 57.804 42.857 0.00 0.00 0.00 2.57
2523 11691 2.672188 CGTTTGCCGTGTATGTTCAA 57.328 45.000 0.00 0.00 0.00 2.69
2536 11704 1.056869 CAATTGGCGGTTACGTTTGC 58.943 50.000 0.00 0.00 43.45 3.68
2537 11705 2.580589 CTCAATTGGCGGTTACGTTTG 58.419 47.619 5.42 0.00 43.45 2.93
2538 11706 1.538075 CCTCAATTGGCGGTTACGTTT 59.462 47.619 5.42 0.00 43.45 3.60
2539 11707 1.161843 CCTCAATTGGCGGTTACGTT 58.838 50.000 5.42 0.00 43.45 3.99
2540 11708 1.303091 GCCTCAATTGGCGGTTACGT 61.303 55.000 5.42 0.00 43.74 3.57
2541 11709 1.427819 GCCTCAATTGGCGGTTACG 59.572 57.895 5.42 0.00 43.74 3.18
2549 11717 1.517694 GCACGCATGCCTCAATTGG 60.518 57.895 13.15 0.00 46.97 3.16
2550 11718 4.082192 GCACGCATGCCTCAATTG 57.918 55.556 13.15 0.00 46.97 2.32
2568 11736 0.806102 CATGGAGCCGTTAGTGGACG 60.806 60.000 0.00 0.00 42.43 4.79
2569 11737 0.535335 TCATGGAGCCGTTAGTGGAC 59.465 55.000 0.00 0.00 0.00 4.02
2570 11738 0.535335 GTCATGGAGCCGTTAGTGGA 59.465 55.000 0.00 0.00 0.00 4.02
2571 11739 0.806102 CGTCATGGAGCCGTTAGTGG 60.806 60.000 0.00 0.00 0.00 4.00
2572 11740 0.806102 CCGTCATGGAGCCGTTAGTG 60.806 60.000 0.00 0.00 42.00 2.74
2573 11741 1.255667 ACCGTCATGGAGCCGTTAGT 61.256 55.000 0.00 0.00 42.00 2.24
2574 11742 0.806102 CACCGTCATGGAGCCGTTAG 60.806 60.000 0.00 0.00 42.00 2.34
2575 11743 1.216977 CACCGTCATGGAGCCGTTA 59.783 57.895 0.00 0.00 42.00 3.18
2576 11744 2.047274 CACCGTCATGGAGCCGTT 60.047 61.111 0.00 0.00 42.00 4.44
2577 11745 4.082523 CCACCGTCATGGAGCCGT 62.083 66.667 0.00 0.00 43.02 5.68
2578 11746 4.082523 ACCACCGTCATGGAGCCG 62.083 66.667 4.73 0.00 43.02 5.52
2579 11747 2.436646 CACCACCGTCATGGAGCC 60.437 66.667 4.73 0.00 43.02 4.70
2580 11748 2.436646 CCACCACCGTCATGGAGC 60.437 66.667 4.73 0.00 43.02 4.70
2581 11749 1.613317 TAGCCACCACCGTCATGGAG 61.613 60.000 4.73 0.00 43.02 3.86
2582 11750 0.980754 ATAGCCACCACCGTCATGGA 60.981 55.000 4.73 0.00 43.02 3.41
2583 11751 0.756294 TATAGCCACCACCGTCATGG 59.244 55.000 0.00 0.00 46.10 3.66
2584 11752 2.483876 CTTATAGCCACCACCGTCATG 58.516 52.381 0.00 0.00 0.00 3.07
2585 11753 1.202651 GCTTATAGCCACCACCGTCAT 60.203 52.381 0.00 0.00 34.48 3.06
2586 11754 0.177141 GCTTATAGCCACCACCGTCA 59.823 55.000 0.00 0.00 34.48 4.35
2587 11755 2.987752 GCTTATAGCCACCACCGTC 58.012 57.895 0.00 0.00 34.48 4.79
2597 11765 1.664965 CGGGTGCTCGGCTTATAGC 60.665 63.158 0.00 0.00 41.46 2.97
2598 11766 0.603569 ATCGGGTGCTCGGCTTATAG 59.396 55.000 0.00 0.00 0.00 1.31
2599 11767 1.913778 TATCGGGTGCTCGGCTTATA 58.086 50.000 0.00 0.00 0.00 0.98
2600 11768 1.045407 TTATCGGGTGCTCGGCTTAT 58.955 50.000 0.00 0.00 0.00 1.73
2601 11769 0.825410 TTTATCGGGTGCTCGGCTTA 59.175 50.000 0.00 0.00 0.00 3.09
2614 11782 0.738389 AAGCCGGGTGCAATTTATCG 59.262 50.000 7.07 0.00 44.83 2.92
2627 11795 1.643868 TTTGTGCATCGCTAAGCCGG 61.644 55.000 0.00 0.00 0.00 6.13
2673 11841 9.278978 TGCAACAAGTAATTATAAGTCAACTCA 57.721 29.630 0.00 0.00 0.00 3.41
2748 11922 0.828022 ATGGGATCGAACGTGCCTTA 59.172 50.000 0.00 0.00 0.00 2.69
2750 11924 0.035439 AAATGGGATCGAACGTGCCT 60.035 50.000 0.00 0.00 0.00 4.75
2756 11930 2.213499 AGCGATGAAATGGGATCGAAC 58.787 47.619 0.00 0.00 43.36 3.95
2776 11950 7.451732 ACTACGCCTCTCAGACTATTCTAATA 58.548 38.462 0.00 0.00 0.00 0.98
2777 11951 6.300703 ACTACGCCTCTCAGACTATTCTAAT 58.699 40.000 0.00 0.00 0.00 1.73
2789 11963 2.481854 GTAGATCGACTACGCCTCTCA 58.518 52.381 8.68 0.00 41.36 3.27
2800 11974 4.095483 TGTTTTAGTCCTCGGTAGATCGAC 59.905 45.833 0.00 0.00 35.18 4.20
2830 12004 1.154016 AATCTCGGTGTCGTGCTCG 60.154 57.895 0.81 0.81 37.69 5.03
2834 12008 2.090041 CGTTAACAATCTCGGTGTCGTG 59.910 50.000 6.39 0.00 37.69 4.35
2841 12015 3.367025 GTCAACCTCGTTAACAATCTCGG 59.633 47.826 6.39 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.