Multiple sequence alignment - TraesCS2D01G491200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G491200 chr2D 100.000 6794 0 0 1 6794 589972755 589979548 0.000000e+00 12547.0
1 TraesCS2D01G491200 chr2D 85.487 565 47 11 1670 2228 589904480 589905015 2.140000e-154 556.0
2 TraesCS2D01G491200 chr2D 86.181 398 34 12 1265 1658 610955352 610954972 1.760000e-110 411.0
3 TraesCS2D01G491200 chr2D 86.207 348 32 8 1256 1601 589904159 589904492 5.010000e-96 363.0
4 TraesCS2D01G491200 chr2D 77.692 260 28 14 334 563 589903842 589904101 1.540000e-26 132.0
5 TraesCS2D01G491200 chr2D 91.781 73 6 0 6722 6794 5166747 5166675 1.210000e-17 102.0
6 TraesCS2D01G491200 chr2A 90.297 6431 366 116 530 6794 724297137 724303475 0.000000e+00 8181.0
7 TraesCS2D01G491200 chr2A 84.139 807 68 27 637 1428 724117773 724118534 0.000000e+00 726.0
8 TraesCS2D01G491200 chr2A 86.728 324 32 4 1873 2185 724125054 724125377 3.900000e-92 350.0
9 TraesCS2D01G491200 chr2A 95.370 108 5 0 1762 1869 724124639 724124746 9.060000e-39 172.0
10 TraesCS2D01G491200 chr2A 93.151 73 5 0 6722 6794 3450345 3450273 2.590000e-19 108.0
11 TraesCS2D01G491200 chr2A 84.932 73 11 0 6722 6794 47672424 47672352 2.630000e-09 75.0
12 TraesCS2D01G491200 chr2A 93.750 48 2 1 2181 2228 724125647 724125693 3.400000e-08 71.3
13 TraesCS2D01G491200 chr2A 90.000 50 5 0 6278 6327 631010543 631010494 1.580000e-06 65.8
14 TraesCS2D01G491200 chr2B 92.123 5218 281 64 486 5629 714127583 714132744 0.000000e+00 7239.0
15 TraesCS2D01G491200 chr2B 91.566 498 23 10 5648 6140 714132861 714133344 0.000000e+00 669.0
16 TraesCS2D01G491200 chr2B 86.733 505 9 16 6348 6794 714133727 714134231 6.080000e-140 508.0
17 TraesCS2D01G491200 chr2B 94.521 73 4 0 6722 6794 6307640 6307712 5.570000e-21 113.0
18 TraesCS2D01G491200 chr2B 89.888 89 3 2 35 118 714127133 714127220 7.200000e-20 110.0
19 TraesCS2D01G491200 chr2B 86.301 73 10 0 6722 6794 760146425 760146353 5.650000e-11 80.5
20 TraesCS2D01G491200 chr7B 93.612 1174 35 6 3507 4669 13305471 13304327 0.000000e+00 1716.0
21 TraesCS2D01G491200 chr7D 87.437 398 32 13 1265 1658 19682955 19683338 6.250000e-120 442.0
22 TraesCS2D01G491200 chr7D 85.263 95 10 4 1133 1225 85519867 85519959 2.020000e-15 95.3
23 TraesCS2D01G491200 chr1B 86.683 398 35 12 1265 1658 182652887 182653270 6.300000e-115 425.0
24 TraesCS2D01G491200 chr1B 90.845 142 9 4 1520 1658 44997523 44997383 3.240000e-43 187.0
25 TraesCS2D01G491200 chr4A 86.514 393 37 9 1265 1655 347705453 347705075 1.050000e-112 418.0
26 TraesCS2D01G491200 chr4A 90.411 73 7 0 6722 6794 665636803 665636731 5.610000e-16 97.1
27 TraesCS2D01G491200 chr4A 89.062 64 7 0 6722 6785 628966596 628966659 5.650000e-11 80.5
28 TraesCS2D01G491200 chr7A 85.930 398 37 14 1265 1658 298770294 298770676 2.280000e-109 407.0
29 TraesCS2D01G491200 chr7A 81.690 71 9 3 6719 6785 637319197 637319267 1.000000e-03 56.5
30 TraesCS2D01G491200 chr3B 86.721 369 31 12 1294 1658 787235212 787234858 1.780000e-105 394.0
31 TraesCS2D01G491200 chr3B 90.411 73 7 0 6722 6794 83504585 83504513 5.610000e-16 97.1
32 TraesCS2D01G491200 chr3B 84.694 98 13 2 1133 1229 724737770 724737866 5.610000e-16 97.1
33 TraesCS2D01G491200 chr1D 84.597 422 37 20 1247 1658 239786297 239786700 1.780000e-105 394.0
34 TraesCS2D01G491200 chr6A 89.344 244 20 6 1265 1505 584151929 584151689 1.110000e-77 302.0
35 TraesCS2D01G491200 chr6B 90.698 172 12 4 1520 1688 210083542 210083372 6.860000e-55 226.0
36 TraesCS2D01G491200 chr6B 88.235 102 12 0 1123 1224 140604462 140604361 9.250000e-24 122.0
37 TraesCS2D01G491200 chr4B 90.854 164 12 3 1520 1681 160268744 160268582 4.130000e-52 217.0
38 TraesCS2D01G491200 chr5A 89.697 165 14 3 1520 1682 554115756 554115593 2.480000e-49 207.0
39 TraesCS2D01G491200 chr6D 87.255 102 13 0 1123 1224 65505124 65505023 4.310000e-22 117.0
40 TraesCS2D01G491200 chr3D 84.848 99 13 2 1133 1230 552003063 552002966 1.560000e-16 99.0
41 TraesCS2D01G491200 chr3A 85.417 96 12 2 1133 1227 688693475 688693381 1.560000e-16 99.0
42 TraesCS2D01G491200 chr3A 84.932 73 11 0 6722 6794 548051323 548051251 2.630000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G491200 chr2D 589972755 589979548 6793 False 12547.000000 12547 100.000000 1 6794 1 chr2D.!!$F1 6793
1 TraesCS2D01G491200 chr2D 589903842 589905015 1173 False 350.333333 556 83.128667 334 2228 3 chr2D.!!$F2 1894
2 TraesCS2D01G491200 chr2A 724297137 724303475 6338 False 8181.000000 8181 90.297000 530 6794 1 chr2A.!!$F2 6264
3 TraesCS2D01G491200 chr2A 724117773 724118534 761 False 726.000000 726 84.139000 637 1428 1 chr2A.!!$F1 791
4 TraesCS2D01G491200 chr2B 714127133 714134231 7098 False 2131.500000 7239 90.077500 35 6794 4 chr2B.!!$F2 6759
5 TraesCS2D01G491200 chr7B 13304327 13305471 1144 True 1716.000000 1716 93.612000 3507 4669 1 chr7B.!!$R1 1162

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 622 0.033109 GCCATTTTACTCTGCCCCCT 60.033 55.0 0.00 0.00 0.00 4.79 F
863 1055 0.035630 ACCTGCAGGCACTCTGATTC 60.036 55.0 33.06 0.00 46.18 2.52 F
1508 1736 0.257039 ACCCCTGATGGATGCTTGAC 59.743 55.0 0.00 0.00 35.39 3.18 F
2452 2701 0.035739 TCGGGGCTACAAAGTTGGTC 59.964 55.0 0.00 0.00 0.00 4.02 F
2879 3131 0.391661 ACATAGGTGTTCTGGCTGCG 60.392 55.0 0.00 0.00 34.01 5.18 F
3542 3810 0.247185 CCAACTCCAAATGGCGCAAT 59.753 50.0 10.83 0.00 34.44 3.56 F
4201 4478 0.031857 AGATGCAGAGAGGCGATTCG 59.968 55.0 0.62 0.62 36.28 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1525 1753 0.106708 GTGTCCTTGTCAGCCTGTGA 59.893 55.0 0.00 0.0 0.00 3.58 R
2434 2683 0.250553 TGACCAACTTTGTAGCCCCG 60.251 55.0 0.00 0.0 0.00 5.73 R
3119 3385 0.038892 CAAACCTGCGCTTGCTTGAT 60.039 50.0 9.73 0.0 40.12 2.57 R
3542 3810 0.104671 GAAAGCAAGGCACCTGCAAA 59.895 50.0 11.84 0.0 44.36 3.68 R
4021 4295 0.321996 GACAACTGAGTGGAGTCCCC 59.678 60.0 6.74 0.0 0.00 4.81 R
5465 5753 0.539669 TCCAGTCTGAACTCGCAGGA 60.540 55.0 0.00 0.0 36.55 3.86 R
6168 6735 0.387239 GTCAACCACAAATCCAGCGC 60.387 55.0 0.00 0.0 0.00 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.817063 CTGCCCGTCGCGCATTTG 62.817 66.667 8.75 0.00 42.08 2.32
31 32 3.737172 GTCGCGCATTTGGCACCT 61.737 61.111 8.75 0.00 45.17 4.00
32 33 3.736100 TCGCGCATTTGGCACCTG 61.736 61.111 8.75 0.00 45.17 4.00
44 45 4.748798 CACCTGCCCCCTCCTCCT 62.749 72.222 0.00 0.00 0.00 3.69
45 46 4.423209 ACCTGCCCCCTCCTCCTC 62.423 72.222 0.00 0.00 0.00 3.71
46 47 4.101077 CCTGCCCCCTCCTCCTCT 62.101 72.222 0.00 0.00 0.00 3.69
51 52 0.620700 GCCCCCTCCTCCTCTTTACA 60.621 60.000 0.00 0.00 0.00 2.41
118 124 1.136147 CATTGTTGGCGCTCTGCTC 59.864 57.895 7.64 0.00 45.43 4.26
119 125 2.393768 ATTGTTGGCGCTCTGCTCG 61.394 57.895 7.64 0.00 45.43 5.03
169 175 1.976112 GGTTCTCGACCTCCTGCTT 59.024 57.895 0.00 0.00 45.55 3.91
170 176 0.108567 GGTTCTCGACCTCCTGCTTC 60.109 60.000 0.00 0.00 45.55 3.86
171 177 0.892063 GTTCTCGACCTCCTGCTTCT 59.108 55.000 0.00 0.00 0.00 2.85
172 178 1.273886 GTTCTCGACCTCCTGCTTCTT 59.726 52.381 0.00 0.00 0.00 2.52
174 180 1.181786 CTCGACCTCCTGCTTCTTCT 58.818 55.000 0.00 0.00 0.00 2.85
175 181 2.026169 TCTCGACCTCCTGCTTCTTCTA 60.026 50.000 0.00 0.00 0.00 2.10
176 182 2.955660 CTCGACCTCCTGCTTCTTCTAT 59.044 50.000 0.00 0.00 0.00 1.98
178 184 2.955660 CGACCTCCTGCTTCTTCTATCT 59.044 50.000 0.00 0.00 0.00 1.98
179 185 3.004315 CGACCTCCTGCTTCTTCTATCTC 59.996 52.174 0.00 0.00 0.00 2.75
180 186 2.955660 ACCTCCTGCTTCTTCTATCTCG 59.044 50.000 0.00 0.00 0.00 4.04
181 187 2.288152 CCTCCTGCTTCTTCTATCTCGC 60.288 54.545 0.00 0.00 0.00 5.03
182 188 2.622942 CTCCTGCTTCTTCTATCTCGCT 59.377 50.000 0.00 0.00 0.00 4.93
185 191 3.181482 CCTGCTTCTTCTATCTCGCTTCA 60.181 47.826 0.00 0.00 0.00 3.02
186 192 3.775202 TGCTTCTTCTATCTCGCTTCAC 58.225 45.455 0.00 0.00 0.00 3.18
187 193 3.120041 GCTTCTTCTATCTCGCTTCACC 58.880 50.000 0.00 0.00 0.00 4.02
188 194 3.429547 GCTTCTTCTATCTCGCTTCACCA 60.430 47.826 0.00 0.00 0.00 4.17
189 195 3.784701 TCTTCTATCTCGCTTCACCAC 57.215 47.619 0.00 0.00 0.00 4.16
190 196 3.357203 TCTTCTATCTCGCTTCACCACT 58.643 45.455 0.00 0.00 0.00 4.00
192 198 1.671328 TCTATCTCGCTTCACCACTCG 59.329 52.381 0.00 0.00 0.00 4.18
193 199 0.100682 TATCTCGCTTCACCACTCGC 59.899 55.000 0.00 0.00 0.00 5.03
194 200 1.877576 ATCTCGCTTCACCACTCGCA 61.878 55.000 0.00 0.00 0.00 5.10
195 201 1.664649 CTCGCTTCACCACTCGCAA 60.665 57.895 0.00 0.00 0.00 4.85
198 204 0.370273 CGCTTCACCACTCGCAATAC 59.630 55.000 0.00 0.00 0.00 1.89
199 205 1.726853 GCTTCACCACTCGCAATACT 58.273 50.000 0.00 0.00 0.00 2.12
200 206 2.734175 CGCTTCACCACTCGCAATACTA 60.734 50.000 0.00 0.00 0.00 1.82
201 207 2.860735 GCTTCACCACTCGCAATACTAG 59.139 50.000 0.00 0.00 0.00 2.57
202 208 3.676324 GCTTCACCACTCGCAATACTAGT 60.676 47.826 0.00 0.00 0.00 2.57
203 209 3.503827 TCACCACTCGCAATACTAGTG 57.496 47.619 5.39 0.00 40.80 2.74
206 212 2.961526 CACTCGCAATACTAGTGGGT 57.038 50.000 5.39 0.00 38.19 4.51
208 214 3.966154 CACTCGCAATACTAGTGGGTAG 58.034 50.000 5.39 0.00 38.19 3.18
209 215 3.380637 CACTCGCAATACTAGTGGGTAGT 59.619 47.826 5.39 0.00 44.69 2.73
210 216 3.380637 ACTCGCAATACTAGTGGGTAGTG 59.619 47.826 5.39 0.00 42.37 2.74
212 218 2.802057 CGCAATACTAGTGGGTAGTGGC 60.802 54.545 5.39 0.00 42.37 5.01
215 221 4.694339 CAATACTAGTGGGTAGTGGCTTC 58.306 47.826 5.39 0.00 42.37 3.86
217 223 1.272313 ACTAGTGGGTAGTGGCTTCGA 60.272 52.381 0.00 0.00 40.76 3.71
218 224 1.822990 CTAGTGGGTAGTGGCTTCGAA 59.177 52.381 0.00 0.00 0.00 3.71
219 225 1.276622 AGTGGGTAGTGGCTTCGAAT 58.723 50.000 0.00 0.00 0.00 3.34
220 226 1.066143 AGTGGGTAGTGGCTTCGAATG 60.066 52.381 0.00 0.00 0.00 2.67
221 227 0.251916 TGGGTAGTGGCTTCGAATGG 59.748 55.000 0.00 0.00 0.00 3.16
250 262 2.028190 CCGGCGATCTCGATGCTT 59.972 61.111 9.30 0.00 43.02 3.91
251 263 2.018866 CCGGCGATCTCGATGCTTC 61.019 63.158 9.30 0.00 43.02 3.86
254 266 1.555741 GGCGATCTCGATGCTTCTGC 61.556 60.000 3.33 0.00 43.02 4.26
255 267 0.597118 GCGATCTCGATGCTTCTGCT 60.597 55.000 3.33 0.00 43.02 4.24
256 268 1.407434 CGATCTCGATGCTTCTGCTC 58.593 55.000 0.00 0.00 43.02 4.26
257 269 1.782044 GATCTCGATGCTTCTGCTCC 58.218 55.000 0.00 0.00 40.48 4.70
258 270 0.392336 ATCTCGATGCTTCTGCTCCC 59.608 55.000 0.00 0.00 40.48 4.30
259 271 1.227497 CTCGATGCTTCTGCTCCCC 60.227 63.158 0.00 0.00 40.48 4.81
260 272 2.203126 CGATGCTTCTGCTCCCCC 60.203 66.667 0.00 0.00 40.48 5.40
271 283 3.077556 CTCCCCCAGTCGGAGGTG 61.078 72.222 0.00 0.00 42.85 4.00
315 327 3.637273 GCCCTTCTCCACACGGGT 61.637 66.667 0.00 0.00 38.97 5.28
318 330 1.003718 CCTTCTCCACACGGGTTCC 60.004 63.158 0.00 0.00 38.11 3.62
328 340 2.280524 CGGGTTCCGTTCACTGCA 60.281 61.111 0.00 0.00 42.73 4.41
329 341 2.604174 CGGGTTCCGTTCACTGCAC 61.604 63.158 0.00 0.00 42.73 4.57
330 342 2.258726 GGGTTCCGTTCACTGCACC 61.259 63.158 0.00 0.00 0.00 5.01
331 343 1.227853 GGTTCCGTTCACTGCACCT 60.228 57.895 0.00 0.00 0.00 4.00
332 344 1.507141 GGTTCCGTTCACTGCACCTG 61.507 60.000 0.00 0.00 0.00 4.00
353 365 2.409870 CCTGCATGGGCTTTCGTCC 61.410 63.158 0.00 0.00 41.91 4.79
361 373 0.108089 GGGCTTTCGTCCTCTTCTCC 60.108 60.000 0.00 0.00 30.13 3.71
362 374 0.899019 GGCTTTCGTCCTCTTCTCCT 59.101 55.000 0.00 0.00 0.00 3.69
365 377 2.675603 GCTTTCGTCCTCTTCTCCTTCC 60.676 54.545 0.00 0.00 0.00 3.46
387 411 1.303317 GAAATGCCCCACACCTCGT 60.303 57.895 0.00 0.00 0.00 4.18
388 412 1.303317 AAATGCCCCACACCTCGTC 60.303 57.895 0.00 0.00 0.00 4.20
403 427 2.125350 GTCCCTCGCCTGCTTCAG 60.125 66.667 0.00 0.00 0.00 3.02
423 450 1.887854 GGGACTAGTTCTAGCGATCCC 59.112 57.143 14.20 14.20 37.74 3.85
448 486 4.426313 GGGGGCCTCCTTGTTCCG 62.426 72.222 17.08 0.00 35.33 4.30
450 488 2.359975 GGGCCTCCTTGTTCCGTG 60.360 66.667 0.84 0.00 0.00 4.94
467 505 4.404098 GGTTCGACCCCACGCCAT 62.404 66.667 0.00 0.00 30.04 4.40
476 514 4.457496 CCACGCCATGCTCGACCT 62.457 66.667 11.67 0.00 0.00 3.85
478 516 4.498520 ACGCCATGCTCGACCTCG 62.499 66.667 11.67 0.00 41.45 4.63
480 518 4.819761 GCCATGCTCGACCTCGCA 62.820 66.667 0.00 0.00 40.87 5.10
481 519 2.584418 CCATGCTCGACCTCGCAG 60.584 66.667 3.38 0.00 39.82 5.18
482 520 2.584418 CATGCTCGACCTCGCAGG 60.584 66.667 3.38 0.00 42.49 4.85
483 521 2.755876 ATGCTCGACCTCGCAGGA 60.756 61.111 8.91 0.00 37.67 3.86
484 522 2.780094 ATGCTCGACCTCGCAGGAG 61.780 63.158 8.91 0.00 37.67 3.69
524 578 0.462759 GCACCTAAGCTGGGCTAGTG 60.463 60.000 0.00 10.72 38.25 2.74
528 582 0.807667 CTAAGCTGGGCTAGTGTGCG 60.808 60.000 0.00 0.00 38.25 5.34
546 600 2.698274 TGCGAGTATAGCAAGATTCCCA 59.302 45.455 0.00 0.00 45.91 4.37
562 616 0.734889 CCCAGCGCCATTTTACTCTG 59.265 55.000 2.29 0.00 0.00 3.35
563 617 0.099436 CCAGCGCCATTTTACTCTGC 59.901 55.000 2.29 0.00 0.00 4.26
564 618 0.099436 CAGCGCCATTTTACTCTGCC 59.901 55.000 2.29 0.00 0.00 4.85
565 619 1.032114 AGCGCCATTTTACTCTGCCC 61.032 55.000 2.29 0.00 0.00 5.36
566 620 2.004808 GCGCCATTTTACTCTGCCCC 62.005 60.000 0.00 0.00 0.00 5.80
567 621 1.384222 CGCCATTTTACTCTGCCCCC 61.384 60.000 0.00 0.00 0.00 5.40
568 622 0.033109 GCCATTTTACTCTGCCCCCT 60.033 55.000 0.00 0.00 0.00 4.79
569 623 1.214424 GCCATTTTACTCTGCCCCCTA 59.786 52.381 0.00 0.00 0.00 3.53
570 624 2.749800 GCCATTTTACTCTGCCCCCTAG 60.750 54.545 0.00 0.00 0.00 3.02
571 625 2.576615 CATTTTACTCTGCCCCCTAGC 58.423 52.381 0.00 0.00 0.00 3.42
572 626 1.966845 TTTTACTCTGCCCCCTAGCT 58.033 50.000 0.00 0.00 0.00 3.32
573 627 1.497161 TTTACTCTGCCCCCTAGCTC 58.503 55.000 0.00 0.00 0.00 4.09
574 628 0.398664 TTACTCTGCCCCCTAGCTCC 60.399 60.000 0.00 0.00 0.00 4.70
575 629 1.590339 TACTCTGCCCCCTAGCTCCA 61.590 60.000 0.00 0.00 0.00 3.86
576 630 2.041508 TCTGCCCCCTAGCTCCAG 60.042 66.667 0.00 0.00 0.00 3.86
577 631 3.871395 CTGCCCCCTAGCTCCAGC 61.871 72.222 0.00 0.00 42.49 4.85
581 635 4.505970 CCCCTAGCTCCAGCCCCT 62.506 72.222 0.00 0.00 43.38 4.79
582 636 3.167105 CCCTAGCTCCAGCCCCTG 61.167 72.222 0.00 0.00 43.38 4.45
583 637 2.366167 CCTAGCTCCAGCCCCTGT 60.366 66.667 0.00 0.00 43.38 4.00
584 638 2.439104 CCTAGCTCCAGCCCCTGTC 61.439 68.421 0.00 0.00 43.38 3.51
585 639 2.759973 TAGCTCCAGCCCCTGTCG 60.760 66.667 0.00 0.00 43.38 4.35
616 670 2.925352 GCGTCGCGTGACTGAAAA 59.075 55.556 25.28 0.00 43.21 2.29
617 671 1.436606 GCGTCGCGTGACTGAAAAC 60.437 57.895 25.28 5.62 43.21 2.43
618 672 1.921475 CGTCGCGTGACTGAAAACA 59.079 52.632 25.28 0.00 43.21 2.83
619 673 0.381428 CGTCGCGTGACTGAAAACAC 60.381 55.000 25.28 0.00 43.21 3.32
620 674 0.648441 GTCGCGTGACTGAAAACACA 59.352 50.000 21.55 0.00 42.08 3.72
621 675 1.061421 GTCGCGTGACTGAAAACACAA 59.939 47.619 21.55 0.00 42.08 3.33
622 676 1.732809 TCGCGTGACTGAAAACACAAA 59.267 42.857 5.77 0.00 36.91 2.83
623 677 2.159824 TCGCGTGACTGAAAACACAAAA 59.840 40.909 5.77 0.00 36.91 2.44
624 678 2.525891 CGCGTGACTGAAAACACAAAAG 59.474 45.455 0.00 0.00 36.91 2.27
625 679 2.278875 GCGTGACTGAAAACACAAAAGC 59.721 45.455 0.00 0.00 36.91 3.51
626 680 2.851824 CGTGACTGAAAACACAAAAGCC 59.148 45.455 0.00 0.00 36.91 4.35
627 681 2.851824 GTGACTGAAAACACAAAAGCCG 59.148 45.455 0.00 0.00 37.05 5.52
628 682 1.852280 GACTGAAAACACAAAAGCCGC 59.148 47.619 0.00 0.00 0.00 6.53
629 683 1.208259 CTGAAAACACAAAAGCCGCC 58.792 50.000 0.00 0.00 0.00 6.13
630 684 0.820871 TGAAAACACAAAAGCCGCCT 59.179 45.000 0.00 0.00 0.00 5.52
631 685 1.205893 TGAAAACACAAAAGCCGCCTT 59.794 42.857 0.00 0.00 0.00 4.35
632 686 1.858458 GAAAACACAAAAGCCGCCTTC 59.142 47.619 0.00 0.00 0.00 3.46
633 687 1.111277 AAACACAAAAGCCGCCTTCT 58.889 45.000 0.00 0.00 0.00 2.85
634 688 1.111277 AACACAAAAGCCGCCTTCTT 58.889 45.000 0.00 0.00 0.00 2.52
635 689 1.111277 ACACAAAAGCCGCCTTCTTT 58.889 45.000 0.00 0.00 35.47 2.52
673 822 2.571757 GCGGGTTTTTAGCCAGCC 59.428 61.111 0.00 0.00 40.50 4.85
674 823 2.272447 GCGGGTTTTTAGCCAGCCA 61.272 57.895 0.00 0.00 40.50 4.75
675 824 1.604147 GCGGGTTTTTAGCCAGCCAT 61.604 55.000 0.00 0.00 40.50 4.40
676 825 1.757682 CGGGTTTTTAGCCAGCCATA 58.242 50.000 0.00 0.00 0.00 2.74
677 826 1.676006 CGGGTTTTTAGCCAGCCATAG 59.324 52.381 0.00 0.00 0.00 2.23
678 827 1.409064 GGGTTTTTAGCCAGCCATAGC 59.591 52.381 0.00 0.00 40.32 2.97
682 831 3.874383 TTTTAGCCAGCCATAGCCATA 57.126 42.857 0.00 0.00 41.25 2.74
690 839 1.292223 CCATAGCCATACGGACCCG 59.708 63.158 6.94 6.94 46.03 5.28
763 918 1.419381 TTTTGGGGCCTTCTTGTTCC 58.581 50.000 0.84 0.00 0.00 3.62
764 919 0.471022 TTTGGGGCCTTCTTGTTCCC 60.471 55.000 0.84 0.00 38.03 3.97
766 921 3.181282 GGGCCTTCTTGTTCCCCT 58.819 61.111 0.84 0.00 32.60 4.79
771 926 0.969149 CCTTCTTGTTCCCCTTTGCC 59.031 55.000 0.00 0.00 0.00 4.52
778 933 4.043561 TCTTGTTCCCCTTTGCCTACATAA 59.956 41.667 0.00 0.00 0.00 1.90
787 951 1.150764 GCCTACATAACCCTGCCCC 59.849 63.158 0.00 0.00 0.00 5.80
863 1055 0.035630 ACCTGCAGGCACTCTGATTC 60.036 55.000 33.06 0.00 46.18 2.52
884 1083 4.697514 TCCCGAGAATCTGTGATTGATTC 58.302 43.478 8.02 8.02 45.92 2.52
916 1118 2.508887 CTGGCTGAGCTGCTCGTC 60.509 66.667 23.35 19.07 32.35 4.20
921 1123 1.513800 CTGAGCTGCTCGTCTGACG 60.514 63.158 23.33 23.33 44.19 4.35
926 1128 2.967473 CTGCTCGTCTGACGGTCGT 61.967 63.158 27.69 0.00 42.81 4.34
927 1129 2.502080 GCTCGTCTGACGGTCGTG 60.502 66.667 27.69 14.56 42.81 4.35
928 1130 2.962827 GCTCGTCTGACGGTCGTGA 61.963 63.158 27.69 8.45 42.81 4.35
929 1131 1.572941 CTCGTCTGACGGTCGTGAA 59.427 57.895 27.69 7.75 42.81 3.18
938 1147 1.519455 CGGTCGTGAATCCAGCTCC 60.519 63.158 0.00 0.00 0.00 4.70
972 1181 1.081376 CGGTTCTTCAGCGTCGTCT 60.081 57.895 0.00 0.00 41.69 4.18
973 1182 0.663568 CGGTTCTTCAGCGTCGTCTT 60.664 55.000 0.00 0.00 41.69 3.01
975 1184 0.703466 GTTCTTCAGCGTCGTCTTCG 59.297 55.000 0.00 0.00 38.55 3.79
976 1185 0.309922 TTCTTCAGCGTCGTCTTCGT 59.690 50.000 0.00 0.00 38.33 3.85
1274 1493 2.027745 TCCTGCTCTGTTCATCTGGTTC 60.028 50.000 0.00 0.00 0.00 3.62
1430 1652 4.156373 CACAACATCACCATGCATGTAAGA 59.844 41.667 24.58 18.27 33.65 2.10
1435 1657 6.359804 ACATCACCATGCATGTAAGATTACT 58.640 36.000 24.58 7.27 32.48 2.24
1445 1667 6.037062 TGCATGTAAGATTACTTGGTTCATCG 59.963 38.462 16.05 0.00 38.51 3.84
1484 1709 3.568430 GGGTTAGTGGCCTTATGCATTAC 59.432 47.826 3.54 0.00 43.89 1.89
1499 1727 3.157087 GCATTACCATTACCCCTGATGG 58.843 50.000 1.02 1.02 46.57 3.51
1507 1735 1.891933 TACCCCTGATGGATGCTTGA 58.108 50.000 0.00 0.00 35.39 3.02
1508 1736 0.257039 ACCCCTGATGGATGCTTGAC 59.743 55.000 0.00 0.00 35.39 3.18
1510 1738 1.676746 CCCTGATGGATGCTTGACTG 58.323 55.000 0.00 0.00 35.39 3.51
1516 1744 1.985473 TGGATGCTTGACTGCTTGTT 58.015 45.000 0.00 0.00 0.00 2.83
1517 1745 2.309613 TGGATGCTTGACTGCTTGTTT 58.690 42.857 0.00 0.00 0.00 2.83
1518 1746 2.694628 TGGATGCTTGACTGCTTGTTTT 59.305 40.909 0.00 0.00 0.00 2.43
1519 1747 3.132646 TGGATGCTTGACTGCTTGTTTTT 59.867 39.130 0.00 0.00 0.00 1.94
1614 1842 1.089920 CTGTCGGAAATGGAGCTTGG 58.910 55.000 0.00 0.00 0.00 3.61
1642 1874 2.780065 TTCACAACATGCTGAACTGC 57.220 45.000 2.44 0.00 0.00 4.40
1691 1925 5.298276 TGTGTAAAACTGTCAACCTGATTCC 59.702 40.000 0.00 0.00 0.00 3.01
1767 2002 3.204418 GCCAAGAGCAAGCATCCC 58.796 61.111 0.00 0.00 42.97 3.85
1872 2107 3.845781 CTGTTCCCACAGCTGGTATAT 57.154 47.619 19.93 0.00 44.16 0.86
1901 2136 7.762615 CAGCATCTTGTCCACATTTTCATTTAT 59.237 33.333 0.00 0.00 0.00 1.40
1984 2219 2.103263 GGATTACTCGATGCAACCTCCT 59.897 50.000 0.00 0.00 0.00 3.69
2081 2316 6.019961 CGAATGCTGTTTGACTTGCTTTTAAA 60.020 34.615 0.00 0.00 0.00 1.52
2144 2383 6.766467 TCCCTGTCTTCTAAAAGTTTCTTCAC 59.234 38.462 0.00 0.00 33.95 3.18
2281 2520 3.003394 TGGACCCAACTTGCATGATAG 57.997 47.619 6.60 0.00 0.00 2.08
2282 2521 2.308570 TGGACCCAACTTGCATGATAGT 59.691 45.455 6.60 0.00 0.00 2.12
2283 2522 3.521531 TGGACCCAACTTGCATGATAGTA 59.478 43.478 6.60 0.00 0.00 1.82
2382 2631 9.527157 TGTGAACTCTTAATTATTGGATGGAAA 57.473 29.630 0.00 0.00 0.00 3.13
2434 2683 5.593968 TGCATTCAACTGCCATCATATTTC 58.406 37.500 0.00 0.00 41.58 2.17
2452 2701 0.035739 TCGGGGCTACAAAGTTGGTC 59.964 55.000 0.00 0.00 0.00 4.02
2476 2725 8.173775 GTCACAGTGTAGAATCAATCTCAAATG 58.826 37.037 0.00 0.00 39.71 2.32
2673 2925 5.299279 CACAGACACCAAACCTTTACTCAAT 59.701 40.000 0.00 0.00 0.00 2.57
2700 2952 9.449719 CAGACTGGAAACAACTTATATTACCTT 57.550 33.333 0.00 0.00 42.06 3.50
2701 2953 9.449719 AGACTGGAAACAACTTATATTACCTTG 57.550 33.333 0.00 0.00 42.06 3.61
2730 2982 2.738846 CCACTCGGTGAATTTGTGAGAG 59.261 50.000 5.71 2.50 35.23 3.20
2879 3131 0.391661 ACATAGGTGTTCTGGCTGCG 60.392 55.000 0.00 0.00 34.01 5.18
2900 3152 4.711980 GCTCATGCTGCATCAAGC 57.288 55.556 23.04 23.04 43.82 4.01
2948 3201 8.152023 ACAATCCTAGGTACAAATCTTTCTCT 57.848 34.615 9.08 0.00 0.00 3.10
2980 3245 1.176527 CCTGGTTTACTGGTGGCATG 58.823 55.000 0.00 0.00 33.77 4.06
3023 3289 1.388065 ATCTCTTCAGGACGAGCCCG 61.388 60.000 0.00 0.00 42.50 6.13
3041 3307 1.620413 CGTCGCCGTTTGTAGTTCCC 61.620 60.000 0.00 0.00 0.00 3.97
3119 3385 5.423015 GCTATGATGTTTGAGACAGAGGAA 58.577 41.667 0.00 0.00 42.62 3.36
3228 3495 7.004555 TGCTCTGTATTCTTCTCCAGTAAAA 57.995 36.000 0.00 0.00 0.00 1.52
3239 3506 7.394016 TCTTCTCCAGTAAAATGCAACTGATA 58.606 34.615 16.17 4.92 0.00 2.15
3241 3508 7.792374 TCTCCAGTAAAATGCAACTGATATC 57.208 36.000 16.17 0.00 0.00 1.63
3242 3509 7.568349 TCTCCAGTAAAATGCAACTGATATCT 58.432 34.615 16.17 0.00 0.00 1.98
3303 3570 5.100751 ACTTGTTCTGCAAATCTTTCTCG 57.899 39.130 0.00 0.00 36.53 4.04
3313 3580 5.027099 GCAAATCTTTCTCGCTTTCATCTC 58.973 41.667 0.00 0.00 0.00 2.75
3350 3618 6.101150 ACCATATCAAGCCACCTCTACAATAA 59.899 38.462 0.00 0.00 0.00 1.40
3384 3652 8.492673 AGTATAATGCAATATACCATTCACGG 57.507 34.615 22.67 0.00 38.83 4.94
3414 3682 5.278957 GGTTTAGCACCATCTTTCAATGTGT 60.279 40.000 0.00 0.00 46.42 3.72
3415 3683 6.072175 GGTTTAGCACCATCTTTCAATGTGTA 60.072 38.462 0.00 0.00 46.42 2.90
3503 3771 1.480954 ACAATCGTGGGAGTTAGCGAT 59.519 47.619 0.00 0.00 44.53 4.58
3542 3810 0.247185 CCAACTCCAAATGGCGCAAT 59.753 50.000 10.83 0.00 34.44 3.56
3789 4062 8.107095 AGGTACTTCTCAACCATGCTTTATTAA 58.893 33.333 0.00 0.00 38.30 1.40
3985 4259 1.135721 GCTGTTGGATCAGAATTGGCC 59.864 52.381 0.00 0.00 37.61 5.36
4021 4295 4.823157 TGAATCAATCTGGCCAAAACATG 58.177 39.130 7.01 1.92 0.00 3.21
4201 4478 0.031857 AGATGCAGAGAGGCGATTCG 59.968 55.000 0.62 0.62 36.28 3.34
4226 4503 1.572085 CTGTGAAGTTCAGCCTGCCG 61.572 60.000 5.62 0.00 0.00 5.69
4426 4703 0.165944 CACCTTCACGGATTTGCGAC 59.834 55.000 0.00 0.00 36.31 5.19
4537 4814 2.173519 ACTCATGGTGATTTTGCTGGG 58.826 47.619 0.00 0.00 0.00 4.45
4697 4981 1.139498 TTGGATGGTTCAGCCTCCCA 61.139 55.000 3.82 0.00 41.01 4.37
4930 5214 2.377628 ATGTGCACCACGACGGAAGT 62.378 55.000 15.69 0.00 38.77 3.01
4981 5265 6.524734 TGTACAAATGAGCTTCTCTGAAGAA 58.475 36.000 11.03 0.00 39.22 2.52
5056 5340 0.528470 GCTCTCAACCGCAGACTACT 59.472 55.000 0.00 0.00 0.00 2.57
5107 5391 1.981256 TGCCAAGTTTGAAGGAGTCC 58.019 50.000 0.00 0.00 0.00 3.85
5190 5474 1.589993 CCGCAGAGTACAGCATCGG 60.590 63.158 0.00 0.00 0.00 4.18
5257 5541 6.930068 AAGGTATGGTACTACAACACTTCT 57.070 37.500 0.00 0.00 0.00 2.85
5296 5580 7.149569 TGCTGAAACTTCTTTGATAATGAGG 57.850 36.000 0.00 0.00 0.00 3.86
5301 5585 9.219603 TGAAACTTCTTTGATAATGAGGTAGTG 57.780 33.333 0.00 0.00 0.00 2.74
5323 5611 5.979517 GTGACTTCAAACTTTTGCTATGCTT 59.020 36.000 0.00 0.00 38.05 3.91
5326 5614 8.359642 TGACTTCAAACTTTTGCTATGCTTATT 58.640 29.630 0.00 0.00 38.05 1.40
5369 5657 2.685388 GCAGGTTCAAAAGCTAGGATCC 59.315 50.000 2.48 2.48 37.49 3.36
5372 5660 2.937149 GGTTCAAAAGCTAGGATCCGTC 59.063 50.000 5.98 0.00 0.00 4.79
5402 5690 3.565516 CATCGATGTCACACGGTATAGG 58.434 50.000 17.50 0.00 0.00 2.57
5432 5720 3.933742 CTGAGATCAGCCATCGCG 58.066 61.111 0.00 0.00 41.18 5.87
5435 5723 1.066422 GAGATCAGCCATCGCGTCA 59.934 57.895 5.77 0.00 41.18 4.35
5456 5744 1.155155 GTTTGGGCTCCAGGGGAAA 59.845 57.895 0.00 0.00 33.81 3.13
5465 5753 0.909610 TCCAGGGGAAACTCGAGCAT 60.910 55.000 13.61 0.28 34.16 3.79
5501 5789 2.355132 CTGGAAGCTAGTGTACGTCGAT 59.645 50.000 0.00 0.00 0.00 3.59
5522 5810 4.640805 TTACGAAAATGACGTGCTTCTC 57.359 40.909 0.00 0.00 43.73 2.87
5551 5839 4.067896 GACGATCCGTGGGAGTAAGTATA 58.932 47.826 0.00 0.00 41.37 1.47
5553 5841 5.075493 ACGATCCGTGGGAGTAAGTATATT 58.925 41.667 0.00 0.00 39.18 1.28
5554 5842 5.048224 ACGATCCGTGGGAGTAAGTATATTG 60.048 44.000 0.00 0.00 39.18 1.90
5555 5843 5.621555 CGATCCGTGGGAGTAAGTATATTGG 60.622 48.000 0.00 0.00 34.05 3.16
5556 5844 3.322828 TCCGTGGGAGTAAGTATATTGGC 59.677 47.826 0.00 0.00 0.00 4.52
5557 5845 3.070446 CCGTGGGAGTAAGTATATTGGCA 59.930 47.826 0.00 0.00 0.00 4.92
5558 5846 4.307432 CGTGGGAGTAAGTATATTGGCAG 58.693 47.826 0.00 0.00 0.00 4.85
5559 5847 4.065789 GTGGGAGTAAGTATATTGGCAGC 58.934 47.826 0.00 0.00 0.00 5.25
5560 5848 3.973973 TGGGAGTAAGTATATTGGCAGCT 59.026 43.478 0.00 0.00 0.00 4.24
5561 5849 4.412199 TGGGAGTAAGTATATTGGCAGCTT 59.588 41.667 0.00 0.00 0.00 3.74
5562 5850 5.104109 TGGGAGTAAGTATATTGGCAGCTTT 60.104 40.000 0.00 0.00 0.00 3.51
5563 5851 5.470437 GGGAGTAAGTATATTGGCAGCTTTC 59.530 44.000 0.00 0.00 0.00 2.62
5564 5852 5.470437 GGAGTAAGTATATTGGCAGCTTTCC 59.530 44.000 0.00 0.00 0.00 3.13
5565 5853 6.001449 AGTAAGTATATTGGCAGCTTTCCA 57.999 37.500 0.41 0.41 0.00 3.53
5568 5856 4.067896 AGTATATTGGCAGCTTTCCATCG 58.932 43.478 5.37 0.00 32.92 3.84
5569 5857 2.708216 TATTGGCAGCTTTCCATCGA 57.292 45.000 5.37 0.00 32.92 3.59
5574 5862 1.745087 GGCAGCTTTCCATCGATTTCA 59.255 47.619 0.00 0.00 0.00 2.69
5587 5875 6.321945 TCCATCGATTTCATGACAAAATCCAT 59.678 34.615 11.32 3.81 39.07 3.41
5590 5878 6.554419 TCGATTTCATGACAAAATCCATCAC 58.446 36.000 11.32 0.00 39.07 3.06
5592 5880 6.252015 CGATTTCATGACAAAATCCATCACAC 59.748 38.462 11.32 0.00 39.07 3.82
5595 5883 5.018149 TCATGACAAAATCCATCACACCAT 58.982 37.500 0.00 0.00 0.00 3.55
5608 5896 2.241176 TCACACCATATCCCTTGGGTTC 59.759 50.000 5.51 0.00 38.64 3.62
5615 5903 4.449672 CCATATCCCTTGGGTTCATCCATT 60.450 45.833 5.51 0.00 36.58 3.16
5619 5907 2.559478 CCCTTGGGTTCATCCATTTCCA 60.559 50.000 0.00 0.00 36.58 3.53
5629 5917 7.201821 GGGTTCATCCATTTCCAAATGTAGTAG 60.202 40.741 10.43 0.00 43.24 2.57
5656 6026 8.423906 AGTTCTTAGGAATTCTTCACTCACTA 57.576 34.615 5.23 0.00 33.71 2.74
5657 6027 9.041354 AGTTCTTAGGAATTCTTCACTCACTAT 57.959 33.333 5.23 0.00 33.71 2.12
5658 6028 9.092876 GTTCTTAGGAATTCTTCACTCACTATG 57.907 37.037 5.23 0.00 33.71 2.23
5667 6058 3.319137 TCACTCACTATGTGTGCTTCC 57.681 47.619 6.22 0.00 45.81 3.46
5721 6112 1.534805 CGATGCATCCGGATCCTATCG 60.535 57.143 26.63 26.63 36.67 2.92
5730 6121 0.528470 GGATCCTATCGCCTTCGGAG 59.472 60.000 3.84 0.00 36.13 4.63
5769 6160 1.538047 ACGGCATGCAAGTCTTGAAT 58.462 45.000 21.36 8.63 0.00 2.57
5781 6172 3.607741 AGTCTTGAATGACTGCATCCAG 58.392 45.455 0.00 0.00 44.64 3.86
5898 6290 2.861147 AGTGCCTTCCTTAGTTGACC 57.139 50.000 0.00 0.00 0.00 4.02
5951 6344 7.682628 TGGTAGGGGATTTAGATTTATTACCG 58.317 38.462 0.00 0.00 31.70 4.02
6072 6468 5.229423 GCTTTATAGAGAGAGCCTGATGTG 58.771 45.833 0.00 0.00 0.00 3.21
6098 6494 3.073946 ACACCAGTGTAAATGTTAGGGCT 59.926 43.478 0.54 0.00 42.90 5.19
6116 6514 3.944650 GGGCTGTTGGATTTTGTTTTGTT 59.055 39.130 0.00 0.00 0.00 2.83
6168 6735 1.747355 GATGTGGATCTTGGTTGGCAG 59.253 52.381 0.00 0.00 0.00 4.85
6169 6736 0.895100 TGTGGATCTTGGTTGGCAGC 60.895 55.000 0.00 0.00 0.00 5.25
6171 6738 2.486966 GATCTTGGTTGGCAGCGC 59.513 61.111 0.00 0.00 0.00 5.92
6177 6744 3.064324 GGTTGGCAGCGCTGGATT 61.064 61.111 36.47 0.00 0.00 3.01
6179 6746 1.444895 GTTGGCAGCGCTGGATTTG 60.445 57.895 36.47 13.73 0.00 2.32
6252 6880 2.076100 TCTGGCGCTACATTCTTTGTG 58.924 47.619 7.64 0.00 39.48 3.33
6276 6904 1.263217 GCCTCATGTGTCGTTTTCGTT 59.737 47.619 0.00 0.00 44.46 3.85
6283 6911 5.626543 TCATGTGTCGTTTTCGTTAGTACTC 59.373 40.000 0.00 0.00 44.46 2.59
6284 6912 5.173774 TGTGTCGTTTTCGTTAGTACTCT 57.826 39.130 0.00 0.00 44.46 3.24
6291 6919 5.280214 CGTTTTCGTTAGTACTCTCTTCGTC 59.720 44.000 0.00 0.00 38.65 4.20
6294 6922 2.030213 CGTTAGTACTCTCTTCGTCCGG 59.970 54.545 0.00 0.00 0.00 5.14
6295 6923 2.322355 TAGTACTCTCTTCGTCCGGG 57.678 55.000 0.00 0.00 0.00 5.73
6300 6928 2.022934 ACTCTCTTCGTCCGGGAATAC 58.977 52.381 0.00 0.00 0.00 1.89
6314 6942 4.435425 CGGGAATACTTGTCGGACAAATA 58.565 43.478 22.60 18.16 37.69 1.40
6398 7026 3.498777 GCAGACAGTTTAAGGTTGAGGTC 59.501 47.826 0.00 0.00 0.00 3.85
6432 7065 3.838317 TCCTCGTGCTATAATAATGGGCT 59.162 43.478 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.748798 AGGAGGAGGGGGCAGGTG 62.749 72.222 0.00 0.00 0.00 4.00
28 29 4.423209 GAGGAGGAGGGGGCAGGT 62.423 72.222 0.00 0.00 0.00 4.00
29 30 3.649652 AAGAGGAGGAGGGGGCAGG 62.650 68.421 0.00 0.00 0.00 4.85
30 31 0.326618 TAAAGAGGAGGAGGGGGCAG 60.327 60.000 0.00 0.00 0.00 4.85
31 32 0.620700 GTAAAGAGGAGGAGGGGGCA 60.621 60.000 0.00 0.00 0.00 5.36
32 33 0.620700 TGTAAAGAGGAGGAGGGGGC 60.621 60.000 0.00 0.00 0.00 5.80
33 34 1.205055 GTGTAAAGAGGAGGAGGGGG 58.795 60.000 0.00 0.00 0.00 5.40
34 35 2.112190 GAGTGTAAAGAGGAGGAGGGG 58.888 57.143 0.00 0.00 0.00 4.79
35 36 1.751924 CGAGTGTAAAGAGGAGGAGGG 59.248 57.143 0.00 0.00 0.00 4.30
36 37 1.135333 GCGAGTGTAAAGAGGAGGAGG 59.865 57.143 0.00 0.00 0.00 4.30
37 38 2.096248 AGCGAGTGTAAAGAGGAGGAG 58.904 52.381 0.00 0.00 0.00 3.69
38 39 2.093106 GAGCGAGTGTAAAGAGGAGGA 58.907 52.381 0.00 0.00 0.00 3.71
39 40 1.135333 GGAGCGAGTGTAAAGAGGAGG 59.865 57.143 0.00 0.00 0.00 4.30
40 41 1.202200 CGGAGCGAGTGTAAAGAGGAG 60.202 57.143 0.00 0.00 0.00 3.69
41 42 0.809385 CGGAGCGAGTGTAAAGAGGA 59.191 55.000 0.00 0.00 0.00 3.71
42 43 0.179134 CCGGAGCGAGTGTAAAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
43 44 0.802607 GCCGGAGCGAGTGTAAAGAG 60.803 60.000 5.05 0.00 0.00 2.85
44 45 1.214589 GCCGGAGCGAGTGTAAAGA 59.785 57.895 5.05 0.00 0.00 2.52
45 46 1.080093 TGCCGGAGCGAGTGTAAAG 60.080 57.895 5.05 0.00 44.31 1.85
46 47 1.373748 GTGCCGGAGCGAGTGTAAA 60.374 57.895 5.05 0.00 44.31 2.01
134 140 4.222847 CTACCTTCTCCGGCGGGC 62.223 72.222 27.98 0.00 0.00 6.13
135 141 3.537874 CCTACCTTCTCCGGCGGG 61.538 72.222 27.98 17.02 0.00 6.13
136 142 2.294132 GAACCTACCTTCTCCGGCGG 62.294 65.000 22.51 22.51 0.00 6.13
137 143 1.141234 GAACCTACCTTCTCCGGCG 59.859 63.158 0.00 0.00 0.00 6.46
140 146 1.401199 GTCGAGAACCTACCTTCTCCG 59.599 57.143 3.86 0.00 42.24 4.63
158 164 3.004315 CGAGATAGAAGAAGCAGGAGGTC 59.996 52.174 0.00 0.00 0.00 3.85
164 170 3.796178 GTGAAGCGAGATAGAAGAAGCAG 59.204 47.826 0.00 0.00 0.00 4.24
165 171 3.429547 GGTGAAGCGAGATAGAAGAAGCA 60.430 47.826 0.00 0.00 0.00 3.91
166 172 3.120041 GGTGAAGCGAGATAGAAGAAGC 58.880 50.000 0.00 0.00 0.00 3.86
167 173 4.109050 GTGGTGAAGCGAGATAGAAGAAG 58.891 47.826 0.00 0.00 0.00 2.85
169 175 3.357203 AGTGGTGAAGCGAGATAGAAGA 58.643 45.455 0.00 0.00 0.00 2.87
170 176 3.701241 GAGTGGTGAAGCGAGATAGAAG 58.299 50.000 0.00 0.00 0.00 2.85
171 177 2.097629 CGAGTGGTGAAGCGAGATAGAA 59.902 50.000 0.00 0.00 0.00 2.10
172 178 1.671328 CGAGTGGTGAAGCGAGATAGA 59.329 52.381 0.00 0.00 0.00 1.98
174 180 0.100682 GCGAGTGGTGAAGCGAGATA 59.899 55.000 0.00 0.00 0.00 1.98
175 181 1.153745 GCGAGTGGTGAAGCGAGAT 60.154 57.895 0.00 0.00 0.00 2.75
176 182 2.082629 TTGCGAGTGGTGAAGCGAGA 62.083 55.000 0.00 0.00 0.00 4.04
178 184 0.245266 TATTGCGAGTGGTGAAGCGA 59.755 50.000 0.00 0.00 0.00 4.93
179 185 0.370273 GTATTGCGAGTGGTGAAGCG 59.630 55.000 0.00 0.00 0.00 4.68
180 186 1.726853 AGTATTGCGAGTGGTGAAGC 58.273 50.000 0.00 0.00 0.00 3.86
181 187 3.859961 CACTAGTATTGCGAGTGGTGAAG 59.140 47.826 7.04 0.00 43.96 3.02
182 188 3.845178 CACTAGTATTGCGAGTGGTGAA 58.155 45.455 7.04 0.00 43.96 3.18
187 193 2.961526 ACCCACTAGTATTGCGAGTG 57.038 50.000 7.80 7.80 46.18 3.51
188 194 3.380637 CACTACCCACTAGTATTGCGAGT 59.619 47.826 0.00 0.00 33.53 4.18
189 195 3.243434 CCACTACCCACTAGTATTGCGAG 60.243 52.174 0.00 0.00 33.53 5.03
190 196 2.691526 CCACTACCCACTAGTATTGCGA 59.308 50.000 0.00 0.00 33.53 5.10
192 198 2.434702 AGCCACTACCCACTAGTATTGC 59.565 50.000 0.00 0.00 33.53 3.56
193 199 4.694339 GAAGCCACTACCCACTAGTATTG 58.306 47.826 0.00 0.00 33.53 1.90
194 200 3.383825 CGAAGCCACTACCCACTAGTATT 59.616 47.826 0.00 0.00 33.53 1.89
195 201 2.957006 CGAAGCCACTACCCACTAGTAT 59.043 50.000 0.00 0.00 33.53 2.12
198 204 1.471119 TCGAAGCCACTACCCACTAG 58.529 55.000 0.00 0.00 0.00 2.57
199 205 1.927487 TTCGAAGCCACTACCCACTA 58.073 50.000 0.00 0.00 0.00 2.74
200 206 1.066143 CATTCGAAGCCACTACCCACT 60.066 52.381 3.35 0.00 0.00 4.00
201 207 1.369625 CATTCGAAGCCACTACCCAC 58.630 55.000 3.35 0.00 0.00 4.61
202 208 0.251916 CCATTCGAAGCCACTACCCA 59.748 55.000 3.35 0.00 0.00 4.51
203 209 0.539986 TCCATTCGAAGCCACTACCC 59.460 55.000 3.35 0.00 0.00 3.69
204 210 2.396590 TTCCATTCGAAGCCACTACC 57.603 50.000 3.35 0.00 0.00 3.18
205 211 2.032178 GCATTCCATTCGAAGCCACTAC 59.968 50.000 3.35 0.00 32.78 2.73
206 212 2.288666 GCATTCCATTCGAAGCCACTA 58.711 47.619 3.35 0.00 32.78 2.74
207 213 1.098050 GCATTCCATTCGAAGCCACT 58.902 50.000 3.35 0.00 32.78 4.00
208 214 0.101219 GGCATTCCATTCGAAGCCAC 59.899 55.000 16.49 0.00 41.09 5.01
209 215 1.375853 CGGCATTCCATTCGAAGCCA 61.376 55.000 19.95 0.00 41.30 4.75
210 216 1.356624 CGGCATTCCATTCGAAGCC 59.643 57.895 12.52 12.52 39.49 4.35
212 218 1.356624 GGCGGCATTCCATTCGAAG 59.643 57.895 3.07 0.00 32.78 3.79
215 221 3.952675 CCGGCGGCATTCCATTCG 61.953 66.667 15.42 0.00 0.00 3.34
234 246 1.007964 AGAAGCATCGAGATCGCCG 60.008 57.895 0.00 4.51 39.60 6.46
235 247 1.555741 GCAGAAGCATCGAGATCGCC 61.556 60.000 0.00 0.00 41.58 5.54
236 248 0.597118 AGCAGAAGCATCGAGATCGC 60.597 55.000 0.00 0.00 45.49 4.58
238 250 1.605202 GGGAGCAGAAGCATCGAGATC 60.605 57.143 0.00 0.00 45.49 2.75
241 253 1.227497 GGGGAGCAGAAGCATCGAG 60.227 63.158 0.00 0.00 45.49 4.04
242 254 2.735772 GGGGGAGCAGAAGCATCGA 61.736 63.158 0.00 0.00 45.49 3.59
243 255 2.203126 GGGGGAGCAGAAGCATCG 60.203 66.667 0.00 0.00 45.49 3.84
244 256 1.153005 CTGGGGGAGCAGAAGCATC 60.153 63.158 0.00 0.00 45.49 3.91
245 257 1.919600 GACTGGGGGAGCAGAAGCAT 61.920 60.000 0.00 0.00 45.49 3.79
246 258 2.530151 ACTGGGGGAGCAGAAGCA 60.530 61.111 0.00 0.00 45.49 3.91
250 262 3.965026 CTCCGACTGGGGGAGCAGA 62.965 68.421 3.75 0.00 44.18 4.26
251 263 3.465403 CTCCGACTGGGGGAGCAG 61.465 72.222 3.75 0.00 44.18 4.24
293 305 1.885871 GTGTGGAGAAGGGCAATGC 59.114 57.895 0.00 0.00 0.00 3.56
294 306 1.308069 CCGTGTGGAGAAGGGCAATG 61.308 60.000 0.00 0.00 37.49 2.82
295 307 1.002134 CCGTGTGGAGAAGGGCAAT 60.002 57.895 0.00 0.00 37.49 3.56
296 308 2.429930 CCGTGTGGAGAAGGGCAA 59.570 61.111 0.00 0.00 37.49 4.52
297 309 3.636231 CCCGTGTGGAGAAGGGCA 61.636 66.667 0.00 0.00 37.07 5.36
301 313 1.374252 CGGAACCCGTGTGGAGAAG 60.374 63.158 0.00 0.00 42.73 2.85
315 327 1.891919 GCAGGTGCAGTGAACGGAA 60.892 57.895 0.00 0.00 41.59 4.30
332 344 2.575461 GAAAGCCCATGCAGGTGC 59.425 61.111 0.00 0.00 41.13 5.01
345 357 2.829120 AGGAAGGAGAAGAGGACGAAAG 59.171 50.000 0.00 0.00 0.00 2.62
353 365 3.688673 GCATTTCACAGGAAGGAGAAGAG 59.311 47.826 0.00 0.00 33.82 2.85
361 373 0.890683 GTGGGGCATTTCACAGGAAG 59.109 55.000 0.00 0.00 33.82 3.46
362 374 0.187117 TGTGGGGCATTTCACAGGAA 59.813 50.000 0.00 0.00 38.75 3.36
365 377 0.540365 AGGTGTGGGGCATTTCACAG 60.540 55.000 0.00 0.00 43.45 3.66
387 411 3.393970 CCTGAAGCAGGCGAGGGA 61.394 66.667 0.00 0.00 45.13 4.20
403 427 1.887854 GGGATCGCTAGAACTAGTCCC 59.112 57.143 15.44 15.44 38.22 4.46
423 450 0.773700 AAGGAGGCCCCCATCCTATG 60.774 60.000 11.51 0.00 45.39 2.23
430 462 3.264845 GGAACAAGGAGGCCCCCA 61.265 66.667 5.89 0.00 34.66 4.96
434 466 2.359975 CCACGGAACAAGGAGGCC 60.360 66.667 0.00 0.00 0.00 5.19
436 468 0.949105 CGAACCACGGAACAAGGAGG 60.949 60.000 0.00 0.00 38.46 4.30
437 469 0.032952 TCGAACCACGGAACAAGGAG 59.967 55.000 0.00 0.00 42.82 3.69
438 470 0.249573 GTCGAACCACGGAACAAGGA 60.250 55.000 0.00 0.00 42.82 3.36
450 488 4.404098 ATGGCGTGGGGTCGAACC 62.404 66.667 12.37 12.37 37.60 3.62
467 505 3.443925 CTCCTGCGAGGTCGAGCA 61.444 66.667 18.15 7.16 43.02 4.26
470 508 2.438614 CCTCTCCTGCGAGGTCGA 60.439 66.667 2.94 0.00 44.49 4.20
475 513 3.522731 CGTCCCCTCTCCTGCGAG 61.523 72.222 0.00 0.00 37.48 5.03
479 517 2.317149 GAATGCCGTCCCCTCTCCTG 62.317 65.000 0.00 0.00 0.00 3.86
480 518 2.041265 AATGCCGTCCCCTCTCCT 59.959 61.111 0.00 0.00 0.00 3.69
481 519 2.506472 GAATGCCGTCCCCTCTCC 59.494 66.667 0.00 0.00 0.00 3.71
482 520 2.506472 GGAATGCCGTCCCCTCTC 59.494 66.667 0.00 0.00 0.00 3.20
524 578 3.060602 GGGAATCTTGCTATACTCGCAC 58.939 50.000 0.00 0.00 37.07 5.34
528 582 3.321497 CGCTGGGAATCTTGCTATACTC 58.679 50.000 0.00 0.00 0.00 2.59
546 600 1.032114 GGGCAGAGTAAAATGGCGCT 61.032 55.000 7.64 0.00 42.55 5.92
564 618 4.505970 AGGGGCTGGAGCTAGGGG 62.506 72.222 0.00 0.00 41.70 4.79
565 619 3.167105 CAGGGGCTGGAGCTAGGG 61.167 72.222 0.00 0.00 41.70 3.53
566 620 2.366167 ACAGGGGCTGGAGCTAGG 60.366 66.667 0.00 0.00 41.70 3.02
567 621 2.790791 CGACAGGGGCTGGAGCTAG 61.791 68.421 0.00 0.00 41.70 3.42
568 622 2.759973 CGACAGGGGCTGGAGCTA 60.760 66.667 0.00 0.00 41.70 3.32
601 655 0.648441 TGTGTTTTCAGTCACGCGAC 59.352 50.000 15.93 0.00 42.95 5.19
602 656 1.360820 TTGTGTTTTCAGTCACGCGA 58.639 45.000 15.93 0.00 37.38 5.87
603 657 2.166741 TTTGTGTTTTCAGTCACGCG 57.833 45.000 3.53 3.53 37.38 6.01
604 658 2.278875 GCTTTTGTGTTTTCAGTCACGC 59.721 45.455 0.00 0.00 37.38 5.34
605 659 2.851824 GGCTTTTGTGTTTTCAGTCACG 59.148 45.455 0.00 0.00 37.38 4.35
606 660 2.851824 CGGCTTTTGTGTTTTCAGTCAC 59.148 45.455 0.00 0.00 35.43 3.67
607 661 2.733858 GCGGCTTTTGTGTTTTCAGTCA 60.734 45.455 0.00 0.00 0.00 3.41
608 662 1.852280 GCGGCTTTTGTGTTTTCAGTC 59.148 47.619 0.00 0.00 0.00 3.51
609 663 1.470805 GGCGGCTTTTGTGTTTTCAGT 60.471 47.619 0.00 0.00 0.00 3.41
610 664 1.202405 AGGCGGCTTTTGTGTTTTCAG 60.202 47.619 5.25 0.00 0.00 3.02
611 665 0.820871 AGGCGGCTTTTGTGTTTTCA 59.179 45.000 5.25 0.00 0.00 2.69
612 666 1.858458 GAAGGCGGCTTTTGTGTTTTC 59.142 47.619 26.25 5.69 0.00 2.29
613 667 1.480545 AGAAGGCGGCTTTTGTGTTTT 59.519 42.857 26.25 0.00 0.00 2.43
614 668 1.111277 AGAAGGCGGCTTTTGTGTTT 58.889 45.000 26.25 0.00 0.00 2.83
615 669 1.111277 AAGAAGGCGGCTTTTGTGTT 58.889 45.000 26.25 11.31 0.00 3.32
616 670 1.067060 GAAAGAAGGCGGCTTTTGTGT 59.933 47.619 26.25 8.81 35.83 3.72
617 671 1.338020 AGAAAGAAGGCGGCTTTTGTG 59.662 47.619 26.25 0.00 35.83 3.33
618 672 1.609072 GAGAAAGAAGGCGGCTTTTGT 59.391 47.619 26.25 15.72 35.83 2.83
619 673 1.400242 CGAGAAAGAAGGCGGCTTTTG 60.400 52.381 26.25 9.38 35.83 2.44
620 674 0.875059 CGAGAAAGAAGGCGGCTTTT 59.125 50.000 26.25 17.86 35.83 2.27
621 675 0.955919 CCGAGAAAGAAGGCGGCTTT 60.956 55.000 26.25 10.17 38.22 3.51
622 676 1.376037 CCGAGAAAGAAGGCGGCTT 60.376 57.895 25.83 25.83 37.08 4.35
623 677 2.266055 CCGAGAAAGAAGGCGGCT 59.734 61.111 5.25 5.25 37.08 5.52
624 678 2.798148 TTCCCGAGAAAGAAGGCGGC 62.798 60.000 0.00 0.00 42.29 6.53
625 679 0.321298 TTTCCCGAGAAAGAAGGCGG 60.321 55.000 0.00 0.00 43.20 6.13
626 680 3.226884 TTTCCCGAGAAAGAAGGCG 57.773 52.632 0.00 0.00 37.07 5.52
633 687 1.623811 CTCCCTCACTTTCCCGAGAAA 59.376 52.381 0.00 0.00 39.70 2.52
634 688 1.203137 TCTCCCTCACTTTCCCGAGAA 60.203 52.381 0.00 0.00 0.00 2.87
635 689 0.408309 TCTCCCTCACTTTCCCGAGA 59.592 55.000 0.00 0.00 0.00 4.04
673 822 0.038526 GTCGGGTCCGTATGGCTATG 60.039 60.000 9.36 0.00 40.74 2.23
674 823 1.183676 GGTCGGGTCCGTATGGCTAT 61.184 60.000 9.36 0.00 40.74 2.97
675 824 1.829533 GGTCGGGTCCGTATGGCTA 60.830 63.158 9.36 0.00 40.74 3.93
676 825 3.152400 GGTCGGGTCCGTATGGCT 61.152 66.667 9.36 0.00 40.74 4.75
677 826 4.231439 GGGTCGGGTCCGTATGGC 62.231 72.222 9.36 0.00 40.74 4.40
678 827 3.908081 CGGGTCGGGTCCGTATGG 61.908 72.222 9.36 0.00 42.33 2.74
690 839 1.878953 CTAGAGAGAGAGCTCGGGTC 58.121 60.000 8.37 6.49 45.98 4.46
752 907 0.969149 GGCAAAGGGGAACAAGAAGG 59.031 55.000 0.00 0.00 0.00 3.46
754 909 2.175931 TGTAGGCAAAGGGGAACAAGAA 59.824 45.455 0.00 0.00 0.00 2.52
756 911 2.286365 TGTAGGCAAAGGGGAACAAG 57.714 50.000 0.00 0.00 0.00 3.16
757 912 2.990740 ATGTAGGCAAAGGGGAACAA 57.009 45.000 0.00 0.00 0.00 2.83
758 913 3.562609 GGTTATGTAGGCAAAGGGGAACA 60.563 47.826 0.00 0.00 0.00 3.18
759 914 3.021695 GGTTATGTAGGCAAAGGGGAAC 58.978 50.000 0.00 0.00 0.00 3.62
760 915 2.024751 GGGTTATGTAGGCAAAGGGGAA 60.025 50.000 0.00 0.00 0.00 3.97
761 916 1.567175 GGGTTATGTAGGCAAAGGGGA 59.433 52.381 0.00 0.00 0.00 4.81
762 917 1.569072 AGGGTTATGTAGGCAAAGGGG 59.431 52.381 0.00 0.00 0.00 4.79
763 918 2.654863 CAGGGTTATGTAGGCAAAGGG 58.345 52.381 0.00 0.00 0.00 3.95
764 919 2.024414 GCAGGGTTATGTAGGCAAAGG 58.976 52.381 0.00 0.00 0.00 3.11
765 920 2.024414 GGCAGGGTTATGTAGGCAAAG 58.976 52.381 0.00 0.00 0.00 2.77
766 921 1.341581 GGGCAGGGTTATGTAGGCAAA 60.342 52.381 0.00 0.00 0.00 3.68
771 926 1.227853 GCGGGGCAGGGTTATGTAG 60.228 63.158 0.00 0.00 0.00 2.74
787 951 2.430244 CAAGCAAGCAAGCAGGCG 60.430 61.111 3.19 0.00 39.27 5.52
892 1091 1.447489 CAGCTCAGCCAGACTTCGG 60.447 63.158 0.00 0.00 0.00 4.30
905 1104 2.202544 CCGTCAGACGAGCAGCTC 60.203 66.667 24.88 12.94 46.05 4.09
916 1118 1.078759 GCTGGATTCACGACCGTCAG 61.079 60.000 0.00 0.00 0.00 3.51
921 1123 0.460987 CTGGAGCTGGATTCACGACC 60.461 60.000 0.00 0.00 0.00 4.79
944 1153 1.221466 TGAAGAACCGCTGCTGAACG 61.221 55.000 0.00 0.00 0.00 3.95
945 1154 0.514691 CTGAAGAACCGCTGCTGAAC 59.485 55.000 0.00 0.00 0.00 3.18
966 1175 2.546789 ACCAAATCCAAACGAAGACGAC 59.453 45.455 0.00 0.00 42.66 4.34
972 1181 1.240256 CCCGACCAAATCCAAACGAA 58.760 50.000 0.00 0.00 0.00 3.85
973 1182 0.606944 CCCCGACCAAATCCAAACGA 60.607 55.000 0.00 0.00 0.00 3.85
975 1184 0.251430 TCCCCCGACCAAATCCAAAC 60.251 55.000 0.00 0.00 0.00 2.93
976 1185 0.039035 CTCCCCCGACCAAATCCAAA 59.961 55.000 0.00 0.00 0.00 3.28
1182 1395 1.677052 GGGAAGTAGTAGACGAGGCTG 59.323 57.143 0.00 0.00 0.00 4.85
1274 1493 6.343703 TCCATGTATGAAGTCAAGTGATCTG 58.656 40.000 0.00 0.00 0.00 2.90
1430 1652 4.553330 ACCTGACGATGAACCAAGTAAT 57.447 40.909 0.00 0.00 0.00 1.89
1435 1657 2.549992 CCTGAACCTGACGATGAACCAA 60.550 50.000 0.00 0.00 0.00 3.67
1445 1667 0.613777 CCCCTACACCTGAACCTGAC 59.386 60.000 0.00 0.00 0.00 3.51
1484 1709 1.426598 AGCATCCATCAGGGGTAATGG 59.573 52.381 0.00 0.00 43.22 3.16
1516 1744 4.527509 TGTCAGCCTGTGAAAACAAAAA 57.472 36.364 0.00 0.00 36.74 1.94
1517 1745 4.493547 CTTGTCAGCCTGTGAAAACAAAA 58.506 39.130 0.00 0.00 36.74 2.44
1518 1746 3.119173 CCTTGTCAGCCTGTGAAAACAAA 60.119 43.478 0.00 0.00 36.74 2.83
1519 1747 2.426738 CCTTGTCAGCCTGTGAAAACAA 59.573 45.455 0.00 0.00 36.74 2.83
1520 1748 2.023673 CCTTGTCAGCCTGTGAAAACA 58.976 47.619 0.00 0.00 36.74 2.83
1521 1749 2.033424 GTCCTTGTCAGCCTGTGAAAAC 59.967 50.000 0.00 0.00 36.74 2.43
1525 1753 0.106708 GTGTCCTTGTCAGCCTGTGA 59.893 55.000 0.00 0.00 0.00 3.58
1533 1761 0.608130 CCTCATCGGTGTCCTTGTCA 59.392 55.000 0.00 0.00 0.00 3.58
1660 1892 6.038271 AGGTTGACAGTTTTACACATTCAGTC 59.962 38.462 0.00 0.00 0.00 3.51
1667 1899 5.298276 GGAATCAGGTTGACAGTTTTACACA 59.702 40.000 0.00 0.00 0.00 3.72
1691 1925 6.865205 GGTTTCCTGAAATTGACAGAATCTTG 59.135 38.462 12.56 0.00 37.54 3.02
1767 2002 1.640428 TCTTGCAGAAATACTCCGCG 58.360 50.000 0.00 0.00 0.00 6.46
1770 2005 6.325596 GGTCAAATTCTTGCAGAAATACTCC 58.674 40.000 3.27 1.95 37.82 3.85
1872 2107 5.945191 TGAAAATGTGGACAAGATGCTGATA 59.055 36.000 0.00 0.00 0.00 2.15
1923 2158 2.366916 ACCTATGTATGAGCTGAGGCAC 59.633 50.000 0.00 0.00 41.70 5.01
1984 2219 2.621526 TCGCACGATAAGCTCCTGATTA 59.378 45.455 0.00 0.00 0.00 1.75
2017 2252 2.900122 GACGGAATGTCCACATGTTG 57.100 50.000 0.00 0.00 42.04 3.33
2029 2264 3.869065 ACCACGATAAATGTGACGGAAT 58.131 40.909 0.00 0.00 39.73 3.01
2032 2267 3.120792 CCTACCACGATAAATGTGACGG 58.879 50.000 0.00 0.00 39.73 4.79
2081 2316 9.874205 CAAATTATGTACCCTTGAATGAACAAT 57.126 29.630 0.00 0.00 0.00 2.71
2144 2383 3.589988 CTGTCCTGTAAGTAGCACCAAG 58.410 50.000 0.00 0.00 0.00 3.61
2281 2520 8.514330 TTGGTTAAGATCCCAAACATACATAC 57.486 34.615 0.00 0.00 37.77 2.39
2391 2640 3.499918 GCAGGAATTGTCTCCATAATCCG 59.500 47.826 0.00 0.00 38.02 4.18
2434 2683 0.250553 TGACCAACTTTGTAGCCCCG 60.251 55.000 0.00 0.00 0.00 5.73
2452 2701 8.260270 TCATTTGAGATTGATTCTACACTGTG 57.740 34.615 6.19 6.19 33.74 3.66
2548 2800 6.489700 TGAATTCAGCAAGTTGGAAATGTCTA 59.510 34.615 3.38 0.00 0.00 2.59
2587 2839 5.098211 GTGTAAGTTAAGTACAGCTACGGG 58.902 45.833 0.00 0.00 32.23 5.28
2673 2925 8.822805 AGGTAATATAAGTTGTTTCCAGTCTGA 58.177 33.333 0.00 0.00 0.00 3.27
2700 2952 3.762407 TTCACCGAGTGGAAATCTTCA 57.238 42.857 4.52 0.00 39.21 3.02
2701 2953 5.048713 ACAAATTCACCGAGTGGAAATCTTC 60.049 40.000 4.52 0.00 39.21 2.87
2730 2982 1.336517 TGTCAGGAATGGACGTTCGAC 60.337 52.381 0.00 0.00 38.10 4.20
2900 3152 8.706492 TGTAGTAAATGGTAAATGAACTACCG 57.294 34.615 0.00 0.00 41.60 4.02
2948 3201 5.652014 CAGTAAACCAGGCAAAATGGAGATA 59.348 40.000 0.00 0.00 40.51 1.98
3023 3289 1.620413 CGGGAACTACAAACGGCGAC 61.620 60.000 16.62 0.00 0.00 5.19
3041 3307 2.159435 GGCCTTATTGTACCTTGCAACG 60.159 50.000 0.00 0.00 0.00 4.10
3119 3385 0.038892 CAAACCTGCGCTTGCTTGAT 60.039 50.000 9.73 0.00 40.12 2.57
3228 3495 4.160642 TGCCTTCAGATATCAGTTGCAT 57.839 40.909 5.32 0.00 0.00 3.96
3239 3506 9.388506 GCATAACAGTATATATTGCCTTCAGAT 57.611 33.333 5.22 0.00 0.00 2.90
3241 3508 8.783833 AGCATAACAGTATATATTGCCTTCAG 57.216 34.615 5.22 0.00 0.00 3.02
3242 3509 9.573166 AAAGCATAACAGTATATATTGCCTTCA 57.427 29.630 5.22 0.00 0.00 3.02
3303 3570 6.072286 TGGTCATTTTTCTCAGAGATGAAAGC 60.072 38.462 0.00 1.98 34.29 3.51
3313 3580 6.095860 TGGCTTGATATGGTCATTTTTCTCAG 59.904 38.462 0.00 0.00 36.54 3.35
3414 3682 5.109210 CAGAACAACTTCACCGAGCATATA 58.891 41.667 0.00 0.00 0.00 0.86
3415 3683 3.935203 CAGAACAACTTCACCGAGCATAT 59.065 43.478 0.00 0.00 0.00 1.78
3488 3756 1.134367 TCAGAATCGCTAACTCCCACG 59.866 52.381 0.00 0.00 0.00 4.94
3503 3771 1.345741 GGCCATCTCATCGGATCAGAA 59.654 52.381 0.00 0.00 0.00 3.02
3542 3810 0.104671 GAAAGCAAGGCACCTGCAAA 59.895 50.000 11.84 0.00 44.36 3.68
3967 4241 2.601240 TGGCCAATTCTGATCCAACA 57.399 45.000 0.61 0.00 0.00 3.33
3985 4259 7.862873 CCAGATTGATTCAGAAACATCATCATG 59.137 37.037 7.48 0.00 35.92 3.07
4021 4295 0.321996 GACAACTGAGTGGAGTCCCC 59.678 60.000 6.74 0.00 0.00 4.81
4226 4503 1.201855 CGACGCAGAAACTGAATCAGC 60.202 52.381 10.62 0.00 34.37 4.26
4426 4703 1.872952 TCTGAAACATGCTGTTGGTCG 59.127 47.619 0.00 0.00 40.14 4.79
4666 4950 2.207988 ACCATCCAATCCAGACCATCA 58.792 47.619 0.00 0.00 0.00 3.07
4697 4981 4.046286 TGCCATTGGAGTCTTGGTAATT 57.954 40.909 6.95 0.00 32.90 1.40
4981 5265 6.126390 TGGATTCCATGTGATTTCCACTATCT 60.126 38.462 0.00 0.00 45.86 1.98
5056 5340 1.979809 TCCCCAGATTAAAGCCCTCA 58.020 50.000 0.00 0.00 0.00 3.86
5107 5391 1.345741 TCTGGCAGAGACAGAACTTGG 59.654 52.381 14.43 0.00 45.60 3.61
5173 5457 2.233654 GCCGATGCTGTACTCTGCG 61.234 63.158 0.00 0.00 40.58 5.18
5285 5569 8.375506 AGTTTGAAGTCACTACCTCATTATCAA 58.624 33.333 0.00 0.00 0.00 2.57
5296 5580 6.578919 GCATAGCAAAAGTTTGAAGTCACTAC 59.421 38.462 7.96 0.00 40.55 2.73
5301 5585 8.748380 AATAAGCATAGCAAAAGTTTGAAGTC 57.252 30.769 7.96 0.00 40.55 3.01
5323 5611 9.006839 GCATGTCATGGATCAGAAGATAAAATA 57.993 33.333 14.64 0.00 33.72 1.40
5326 5614 6.358991 TGCATGTCATGGATCAGAAGATAAA 58.641 36.000 14.64 0.00 33.72 1.40
5347 5635 2.949177 TCCTAGCTTTTGAACCTGCA 57.051 45.000 0.00 0.00 0.00 4.41
5369 5657 1.001268 ACATCGATGGATCTTCCGACG 60.001 52.381 28.09 0.00 40.17 5.12
5372 5660 2.223805 TGTGACATCGATGGATCTTCCG 60.224 50.000 28.09 1.14 40.17 4.30
5381 5669 3.565516 CCTATACCGTGTGACATCGATG 58.434 50.000 23.68 23.68 0.00 3.84
5402 5690 2.362397 TGATCTCAGCTCACGGTAATCC 59.638 50.000 0.00 0.00 0.00 3.01
5432 5720 0.890683 CCTGGAGCCCAAACATTGAC 59.109 55.000 0.00 0.00 30.80 3.18
5435 5723 1.079073 CCCCTGGAGCCCAAACATT 59.921 57.895 0.00 0.00 30.80 2.71
5465 5753 0.539669 TCCAGTCTGAACTCGCAGGA 60.540 55.000 0.00 0.00 36.55 3.86
5471 5759 3.257127 ACACTAGCTTCCAGTCTGAACTC 59.743 47.826 0.00 0.00 31.71 3.01
5501 5789 3.120616 CGAGAAGCACGTCATTTTCGTAA 59.879 43.478 11.79 0.00 39.55 3.18
5513 5801 4.753877 TCGCCGACGAGAAGCACG 62.754 66.667 0.00 0.00 45.12 5.34
5537 5825 4.065789 GCTGCCAATATACTTACTCCCAC 58.934 47.826 0.00 0.00 0.00 4.61
5551 5839 2.062971 ATCGATGGAAAGCTGCCAAT 57.937 45.000 12.12 0.09 39.21 3.16
5553 5841 1.745087 GAAATCGATGGAAAGCTGCCA 59.255 47.619 10.67 10.67 40.24 4.92
5554 5842 1.745087 TGAAATCGATGGAAAGCTGCC 59.255 47.619 0.00 0.00 0.00 4.85
5555 5843 3.065786 TCATGAAATCGATGGAAAGCTGC 59.934 43.478 0.00 0.00 0.00 5.25
5556 5844 4.095334 TGTCATGAAATCGATGGAAAGCTG 59.905 41.667 0.00 0.00 0.00 4.24
5557 5845 4.264253 TGTCATGAAATCGATGGAAAGCT 58.736 39.130 0.00 0.00 0.00 3.74
5558 5846 4.621068 TGTCATGAAATCGATGGAAAGC 57.379 40.909 0.00 0.00 0.00 3.51
5559 5847 7.221452 GGATTTTGTCATGAAATCGATGGAAAG 59.779 37.037 0.00 0.00 41.95 2.62
5560 5848 7.035004 GGATTTTGTCATGAAATCGATGGAAA 58.965 34.615 0.00 0.00 41.95 3.13
5561 5849 6.152492 TGGATTTTGTCATGAAATCGATGGAA 59.848 34.615 0.00 0.00 41.95 3.53
5562 5850 5.651576 TGGATTTTGTCATGAAATCGATGGA 59.348 36.000 0.00 0.00 41.95 3.41
5563 5851 5.893687 TGGATTTTGTCATGAAATCGATGG 58.106 37.500 0.00 0.00 41.95 3.51
5564 5852 7.166970 GTGATGGATTTTGTCATGAAATCGATG 59.833 37.037 16.31 0.00 40.03 3.84
5565 5853 7.148035 TGTGATGGATTTTGTCATGAAATCGAT 60.148 33.333 13.02 13.02 41.51 3.59
5568 5856 6.532657 GGTGTGATGGATTTTGTCATGAAATC 59.467 38.462 9.28 9.28 40.88 2.17
5569 5857 6.014413 TGGTGTGATGGATTTTGTCATGAAAT 60.014 34.615 0.00 0.00 0.00 2.17
5574 5862 6.266103 GGATATGGTGTGATGGATTTTGTCAT 59.734 38.462 0.00 0.00 0.00 3.06
5587 5875 1.979809 ACCCAAGGGATATGGTGTGA 58.020 50.000 13.15 0.00 38.96 3.58
5590 5878 3.490348 GATGAACCCAAGGGATATGGTG 58.510 50.000 13.15 0.00 38.96 4.17
5592 5880 2.446666 TGGATGAACCCAAGGGATATGG 59.553 50.000 13.15 0.00 38.96 2.74
5595 5883 4.387437 GGAAATGGATGAACCCAAGGGATA 60.387 45.833 13.15 0.00 40.04 2.59
5615 5903 9.537852 TCCTAAGAACTACTACTACATTTGGAA 57.462 33.333 0.00 0.00 0.00 3.53
5629 5917 8.308207 AGTGAGTGAAGAATTCCTAAGAACTAC 58.692 37.037 0.65 0.00 46.93 2.73
5656 6026 3.087031 CAAGATTCAGGGAAGCACACAT 58.913 45.455 0.00 0.00 29.60 3.21
5657 6027 2.507484 CAAGATTCAGGGAAGCACACA 58.493 47.619 0.00 0.00 29.60 3.72
5658 6028 1.815003 CCAAGATTCAGGGAAGCACAC 59.185 52.381 0.00 0.00 29.60 3.82
5730 6121 0.741326 TCTCGCTCATCTGCTGTACC 59.259 55.000 0.00 0.00 0.00 3.34
5781 6172 1.377333 GTTGGCCTACTGGTCTGCC 60.377 63.158 10.33 0.00 44.27 4.85
5850 6242 6.147821 GTGTTCAGAACAGCAATCTAGCTTAA 59.852 38.462 16.68 0.00 43.70 1.85
5898 6290 3.369147 CACTGTCAGAAAATCAGCCTACG 59.631 47.826 6.91 0.00 33.12 3.51
5946 6339 0.747283 ACCACACAAAACGCCGGTAA 60.747 50.000 1.90 0.00 0.00 2.85
5947 6340 1.153208 ACCACACAAAACGCCGGTA 60.153 52.632 1.90 0.00 0.00 4.02
5948 6341 2.438795 ACCACACAAAACGCCGGT 60.439 55.556 1.90 0.00 0.00 5.28
5951 6344 2.033550 TGATAACACCACACAAAACGCC 59.966 45.455 0.00 0.00 0.00 5.68
6072 6468 5.048991 CCCTAACATTTACACTGGTGTTGAC 60.049 44.000 11.69 0.00 41.83 3.18
6146 6713 1.474077 GCCAACCAAGATCCACATCAC 59.526 52.381 0.00 0.00 0.00 3.06
6168 6735 0.387239 GTCAACCACAAATCCAGCGC 60.387 55.000 0.00 0.00 0.00 5.92
6169 6736 0.950836 TGTCAACCACAAATCCAGCG 59.049 50.000 0.00 0.00 29.30 5.18
6177 6744 3.320256 TGCATAGCATTTGTCAACCACAA 59.680 39.130 0.00 0.00 37.08 3.33
6179 6746 3.574284 TGCATAGCATTTGTCAACCAC 57.426 42.857 0.00 0.00 31.71 4.16
6252 6880 0.949105 AAACGACACATGAGGCGACC 60.949 55.000 25.58 0.00 0.00 4.79
6276 6904 1.833630 TCCCGGACGAAGAGAGTACTA 59.166 52.381 0.73 0.00 0.00 1.82
6283 6911 2.165845 ACAAGTATTCCCGGACGAAGAG 59.834 50.000 0.73 0.00 0.00 2.85
6284 6912 2.165030 GACAAGTATTCCCGGACGAAGA 59.835 50.000 0.73 0.00 0.00 2.87
6291 6919 0.533491 TGTCCGACAAGTATTCCCGG 59.467 55.000 0.00 0.00 40.24 5.73
6294 6922 6.761714 ACATCTATTTGTCCGACAAGTATTCC 59.238 38.462 14.74 0.00 39.53 3.01
6295 6923 7.772332 ACATCTATTTGTCCGACAAGTATTC 57.228 36.000 14.74 0.00 39.53 1.75
6300 6928 8.568794 TCTAGATACATCTATTTGTCCGACAAG 58.431 37.037 13.51 3.46 38.60 3.16
6345 6973 5.667539 TTTTGGGAACACAAACATTCTGA 57.332 34.783 1.52 0.00 42.67 3.27
6415 7043 2.678336 GCCGAGCCCATTATTATAGCAC 59.322 50.000 0.00 0.00 0.00 4.40
6701 7387 2.245438 CTCTTCCCCTTGCCCTCGTC 62.245 65.000 0.00 0.00 0.00 4.20
6702 7388 2.203938 TCTTCCCCTTGCCCTCGT 60.204 61.111 0.00 0.00 0.00 4.18
6704 7390 2.684499 CCCTCTTCCCCTTGCCCTC 61.684 68.421 0.00 0.00 0.00 4.30
6705 7391 2.615288 CCCTCTTCCCCTTGCCCT 60.615 66.667 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.