Multiple sequence alignment - TraesCS2D01G490700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G490700 chr2D 100.000 6897 0 0 1 6897 589499906 589506802 0.000000e+00 12737.0
1 TraesCS2D01G490700 chr2D 77.106 843 143 35 2691 3506 13723230 13724049 6.350000e-120 442.0
2 TraesCS2D01G490700 chr4A 88.970 3690 277 51 595 4209 684980238 684976604 0.000000e+00 4440.0
3 TraesCS2D01G490700 chr4A 90.644 1678 92 27 4677 6327 684976113 684974474 0.000000e+00 2169.0
4 TraesCS2D01G490700 chr4A 83.315 911 134 10 2961 3867 602260793 602259897 0.000000e+00 824.0
5 TraesCS2D01G490700 chr4A 81.537 1002 171 10 2597 3585 602864252 602863252 0.000000e+00 813.0
6 TraesCS2D01G490700 chr4A 91.906 383 20 6 4303 4675 684976576 684976195 6.130000e-145 525.0
7 TraesCS2D01G490700 chr2A 93.404 2456 102 37 4083 6512 723828866 723831287 0.000000e+00 3583.0
8 TraesCS2D01G490700 chr2A 90.240 1957 164 13 2106 4042 723826919 723828868 0.000000e+00 2531.0
9 TraesCS2D01G490700 chr2A 87.752 1290 69 27 567 1827 723825692 723826921 0.000000e+00 1424.0
10 TraesCS2D01G490700 chr2A 90.597 904 71 7 326 1228 691568320 691569210 0.000000e+00 1186.0
11 TraesCS2D01G490700 chr2A 84.490 490 34 11 115 564 723825152 723825639 4.910000e-121 446.0
12 TraesCS2D01G490700 chr2A 86.908 359 16 9 5817 6174 723848070 723848398 2.350000e-99 374.0
13 TraesCS2D01G490700 chr2A 86.824 296 27 10 6508 6797 723831396 723831685 3.100000e-83 320.0
14 TraesCS2D01G490700 chr2A 88.306 248 15 7 6171 6414 723848332 723848569 1.130000e-72 285.0
15 TraesCS2D01G490700 chr2A 94.805 154 7 1 5671 5823 723836725 723836878 8.940000e-59 239.0
16 TraesCS2D01G490700 chr2A 90.286 175 13 4 6632 6804 723848639 723848811 6.960000e-55 226.0
17 TraesCS2D01G490700 chr2B 91.356 2198 106 31 4258 6414 713695958 713698112 0.000000e+00 2929.0
18 TraesCS2D01G490700 chr2B 89.403 1925 164 19 2175 4067 713693583 713695499 0.000000e+00 2388.0
19 TraesCS2D01G490700 chr2B 89.127 1260 76 20 595 1827 713692327 713693552 0.000000e+00 1511.0
20 TraesCS2D01G490700 chr2B 86.264 182 17 5 6627 6804 713698258 713698435 2.540000e-44 191.0
21 TraesCS2D01G490700 chr2B 94.444 108 6 0 4152 4259 713695691 713695798 4.280000e-37 167.0
22 TraesCS2D01G490700 chr2B 96.629 89 3 0 2 90 765195358 765195270 1.550000e-31 148.0
23 TraesCS2D01G490700 chr2B 95.556 90 3 1 2 90 681399049 681398960 7.210000e-30 143.0
24 TraesCS2D01G490700 chr2B 95.349 43 2 0 4110 4152 713695489 713695531 1.240000e-07 69.4
25 TraesCS2D01G490700 chr6A 90.099 909 70 10 326 1228 36679407 36680301 0.000000e+00 1162.0
26 TraesCS2D01G490700 chr6A 89.845 906 73 9 326 1228 584585021 584585910 0.000000e+00 1146.0
27 TraesCS2D01G490700 chr6A 89.159 904 78 11 326 1228 64724826 64723942 0.000000e+00 1109.0
28 TraesCS2D01G490700 chr4B 82.444 1350 200 26 2595 3925 3785997 3784666 0.000000e+00 1146.0
29 TraesCS2D01G490700 chr4B 82.345 776 115 12 3172 3946 3855614 3856368 0.000000e+00 654.0
30 TraesCS2D01G490700 chr4B 95.402 87 3 1 2 88 378035649 378035734 3.350000e-28 137.0
31 TraesCS2D01G490700 chr1A 88.546 908 82 13 326 1228 573145330 573146220 0.000000e+00 1081.0
32 TraesCS2D01G490700 chr4D 81.077 1300 194 31 2597 3858 3259649 3260934 0.000000e+00 990.0
33 TraesCS2D01G490700 chr4D 81.654 1161 182 17 2596 3746 2072102 2070963 0.000000e+00 935.0
34 TraesCS2D01G490700 chrUn 81.807 786 131 8 3145 3925 47780298 47781076 0.000000e+00 649.0
35 TraesCS2D01G490700 chrUn 83.942 137 18 3 5742 5875 248996162 248996297 2.020000e-25 128.0
36 TraesCS2D01G490700 chrUn 84.733 131 16 3 5748 5875 332781607 332781478 2.020000e-25 128.0
37 TraesCS2D01G490700 chr3D 78.505 1070 163 37 2645 3694 529495455 529496477 2.100000e-179 640.0
38 TraesCS2D01G490700 chr3D 95.455 88 4 0 1 88 136571800 136571887 2.590000e-29 141.0
39 TraesCS2D01G490700 chr3A 77.980 1099 174 41 2645 3724 663440757 663441806 1.630000e-175 627.0
40 TraesCS2D01G490700 chr5B 77.902 982 165 27 2769 3733 710609446 710608500 1.300000e-156 564.0
41 TraesCS2D01G490700 chr5B 77.222 900 163 15 2617 3492 711857920 711858801 8.040000e-134 488.0
42 TraesCS2D01G490700 chr5B 84.375 256 26 7 3838 4090 533386666 533386910 8.940000e-59 239.0
43 TraesCS2D01G490700 chr5B 94.382 89 5 0 1 89 466435012 466435100 3.350000e-28 137.0
44 TraesCS2D01G490700 chr5B 84.733 131 16 3 5748 5875 672433898 672433769 2.020000e-25 128.0
45 TraesCS2D01G490700 chr5B 84.733 131 16 3 5748 5875 672467313 672467184 2.020000e-25 128.0
46 TraesCS2D01G490700 chr7D 78.026 851 152 20 2645 3485 624770163 624769338 2.870000e-138 503.0
47 TraesCS2D01G490700 chr5D 85.227 352 43 8 2479 2824 438518897 438519245 3.060000e-93 353.0
48 TraesCS2D01G490700 chr5D 81.818 286 28 11 3808 4090 438554782 438555046 1.160000e-52 219.0
49 TraesCS2D01G490700 chr5D 84.831 178 15 9 5740 5916 532281101 532280935 1.190000e-37 169.0
50 TraesCS2D01G490700 chr7B 84.122 296 45 2 2596 2890 385434996 385435290 1.130000e-72 285.0
51 TraesCS2D01G490700 chr7B 94.382 89 5 0 1 89 213482702 213482790 3.350000e-28 137.0
52 TraesCS2D01G490700 chr7A 96.667 90 2 1 1 89 127592858 127592769 1.550000e-31 148.0
53 TraesCS2D01G490700 chr1D 95.455 88 4 0 1 88 322129257 322129170 2.590000e-29 141.0
54 TraesCS2D01G490700 chr1B 93.478 92 4 2 3 93 652266629 652266719 1.210000e-27 135.0
55 TraesCS2D01G490700 chr5A 96.000 75 3 0 2100 2174 554058118 554058192 9.390000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G490700 chr2D 589499906 589506802 6896 False 12737.000000 12737 100.000000 1 6897 1 chr2D.!!$F2 6896
1 TraesCS2D01G490700 chr2D 13723230 13724049 819 False 442.000000 442 77.106000 2691 3506 1 chr2D.!!$F1 815
2 TraesCS2D01G490700 chr4A 684974474 684980238 5764 True 2378.000000 4440 90.506667 595 6327 3 chr4A.!!$R3 5732
3 TraesCS2D01G490700 chr4A 602259897 602260793 896 True 824.000000 824 83.315000 2961 3867 1 chr4A.!!$R1 906
4 TraesCS2D01G490700 chr4A 602863252 602864252 1000 True 813.000000 813 81.537000 2597 3585 1 chr4A.!!$R2 988
5 TraesCS2D01G490700 chr2A 723825152 723831685 6533 False 1660.800000 3583 88.542000 115 6797 5 chr2A.!!$F3 6682
6 TraesCS2D01G490700 chr2A 691568320 691569210 890 False 1186.000000 1186 90.597000 326 1228 1 chr2A.!!$F1 902
7 TraesCS2D01G490700 chr2A 723848070 723848811 741 False 295.000000 374 88.500000 5817 6804 3 chr2A.!!$F4 987
8 TraesCS2D01G490700 chr2B 713692327 713698435 6108 False 1209.233333 2929 90.990500 595 6804 6 chr2B.!!$F1 6209
9 TraesCS2D01G490700 chr6A 36679407 36680301 894 False 1162.000000 1162 90.099000 326 1228 1 chr6A.!!$F1 902
10 TraesCS2D01G490700 chr6A 584585021 584585910 889 False 1146.000000 1146 89.845000 326 1228 1 chr6A.!!$F2 902
11 TraesCS2D01G490700 chr6A 64723942 64724826 884 True 1109.000000 1109 89.159000 326 1228 1 chr6A.!!$R1 902
12 TraesCS2D01G490700 chr4B 3784666 3785997 1331 True 1146.000000 1146 82.444000 2595 3925 1 chr4B.!!$R1 1330
13 TraesCS2D01G490700 chr4B 3855614 3856368 754 False 654.000000 654 82.345000 3172 3946 1 chr4B.!!$F1 774
14 TraesCS2D01G490700 chr1A 573145330 573146220 890 False 1081.000000 1081 88.546000 326 1228 1 chr1A.!!$F1 902
15 TraesCS2D01G490700 chr4D 3259649 3260934 1285 False 990.000000 990 81.077000 2597 3858 1 chr4D.!!$F1 1261
16 TraesCS2D01G490700 chr4D 2070963 2072102 1139 True 935.000000 935 81.654000 2596 3746 1 chr4D.!!$R1 1150
17 TraesCS2D01G490700 chrUn 47780298 47781076 778 False 649.000000 649 81.807000 3145 3925 1 chrUn.!!$F1 780
18 TraesCS2D01G490700 chr3D 529495455 529496477 1022 False 640.000000 640 78.505000 2645 3694 1 chr3D.!!$F2 1049
19 TraesCS2D01G490700 chr3A 663440757 663441806 1049 False 627.000000 627 77.980000 2645 3724 1 chr3A.!!$F1 1079
20 TraesCS2D01G490700 chr5B 710608500 710609446 946 True 564.000000 564 77.902000 2769 3733 1 chr5B.!!$R3 964
21 TraesCS2D01G490700 chr5B 711857920 711858801 881 False 488.000000 488 77.222000 2617 3492 1 chr5B.!!$F3 875
22 TraesCS2D01G490700 chr7D 624769338 624770163 825 True 503.000000 503 78.026000 2645 3485 1 chr7D.!!$R1 840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.039035 AAATGCCCTTACCGCCTCAA 59.961 50.000 0.00 0.0 0.00 3.02 F
852 985 0.107312 GAGTCCTGCTGCCATCATGT 60.107 55.000 0.00 0.0 0.00 3.21 F
1210 1364 0.461961 GATGAGAAGGTCCTCCACGG 59.538 60.000 0.00 0.0 35.89 4.94 F
2338 2532 0.248289 GGCCTGTAACGAACCTGCTA 59.752 55.000 0.00 0.0 0.00 3.49 F
3417 3703 0.179089 GCGAGCATCTCTGACATGGT 60.179 55.000 0.00 0.0 34.65 3.55 F
3985 4305 2.057922 TCCCTATCAAAGATCAGGCCC 58.942 52.381 0.00 0.0 0.00 5.80 F
4873 5643 0.546122 TAATCTCGCTTGCCATGGGT 59.454 50.000 15.13 0.0 0.00 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1044 1198 0.982704 ACACTGGCTTCTCTGCAGAT 59.017 50.000 18.63 0.0 34.04 2.90 R
2250 2436 0.112218 ACATGGCTGGCTTGTTGGTA 59.888 50.000 15.55 0.0 0.00 3.25 R
2861 3080 0.165944 GTGAACATTGGCGACTTCCG 59.834 55.000 0.00 0.0 42.21 4.30 R
3698 3999 0.679960 TCCGACTCTGATCGCCTTCA 60.680 55.000 0.00 0.0 40.87 3.02 R
4733 5501 3.760151 TGGAAGCATGAGACCAAAATCTG 59.240 43.478 0.00 0.0 0.00 2.90 R
5714 6508 0.111089 CTGCAAGTCTCGCGTTCAAC 60.111 55.000 5.77 0.1 0.00 3.18 R
6536 7488 0.105964 TGTTCAAGTGGTCACGAGGG 59.894 55.000 0.00 0.0 36.20 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.733024 CGTTTGCGGAAACAGCTATAA 57.267 42.857 28.38 0.00 41.48 0.98
57 58 3.413558 CGTTTGCGGAAACAGCTATAAC 58.586 45.455 28.38 3.03 41.48 1.89
58 59 3.726782 CGTTTGCGGAAACAGCTATAACC 60.727 47.826 28.38 1.75 41.48 2.85
59 60 2.772077 TGCGGAAACAGCTATAACCA 57.228 45.000 0.00 0.00 35.28 3.67
60 61 2.627945 TGCGGAAACAGCTATAACCAG 58.372 47.619 0.00 0.00 35.28 4.00
61 62 1.330829 GCGGAAACAGCTATAACCAGC 59.669 52.381 0.00 0.00 42.12 4.85
62 63 1.593006 CGGAAACAGCTATAACCAGCG 59.407 52.381 0.00 0.00 46.52 5.18
63 64 1.330829 GGAAACAGCTATAACCAGCGC 59.669 52.381 0.00 0.00 46.52 5.92
64 65 1.330829 GAAACAGCTATAACCAGCGCC 59.669 52.381 2.29 0.00 46.52 6.53
65 66 0.541863 AACAGCTATAACCAGCGCCT 59.458 50.000 2.29 0.00 46.52 5.52
66 67 0.179073 ACAGCTATAACCAGCGCCTG 60.179 55.000 2.29 3.03 46.52 4.85
67 68 1.227674 AGCTATAACCAGCGCCTGC 60.228 57.895 2.29 0.00 46.52 4.85
68 69 1.523711 GCTATAACCAGCGCCTGCA 60.524 57.895 2.29 0.00 46.23 4.41
69 70 1.502163 GCTATAACCAGCGCCTGCAG 61.502 60.000 6.78 6.78 46.23 4.41
70 71 1.502163 CTATAACCAGCGCCTGCAGC 61.502 60.000 8.66 2.87 46.23 5.25
79 80 2.410469 GCCTGCAGCGCCAAATAG 59.590 61.111 8.66 0.00 0.00 1.73
80 81 3.113745 CCTGCAGCGCCAAATAGG 58.886 61.111 8.66 1.07 41.84 2.57
81 82 1.451927 CCTGCAGCGCCAAATAGGA 60.452 57.895 8.66 0.00 41.22 2.94
82 83 1.031571 CCTGCAGCGCCAAATAGGAA 61.032 55.000 8.66 0.00 41.22 3.36
83 84 0.810648 CTGCAGCGCCAAATAGGAAA 59.189 50.000 2.29 0.00 41.22 3.13
84 85 1.406539 CTGCAGCGCCAAATAGGAAAT 59.593 47.619 2.29 0.00 41.22 2.17
85 86 1.134753 TGCAGCGCCAAATAGGAAATG 59.865 47.619 2.29 0.00 41.22 2.32
86 87 1.843992 CAGCGCCAAATAGGAAATGC 58.156 50.000 2.29 0.00 41.22 3.56
87 88 0.746659 AGCGCCAAATAGGAAATGCC 59.253 50.000 2.29 0.00 41.22 4.40
88 89 0.249447 GCGCCAAATAGGAAATGCCC 60.249 55.000 0.00 0.00 41.22 5.36
89 90 1.402787 CGCCAAATAGGAAATGCCCT 58.597 50.000 0.00 0.00 41.22 5.19
90 91 1.756538 CGCCAAATAGGAAATGCCCTT 59.243 47.619 0.00 0.00 41.22 3.95
91 92 2.955660 CGCCAAATAGGAAATGCCCTTA 59.044 45.455 0.00 0.00 41.22 2.69
92 93 3.243401 CGCCAAATAGGAAATGCCCTTAC 60.243 47.826 0.00 0.00 41.22 2.34
93 94 3.069586 GCCAAATAGGAAATGCCCTTACC 59.930 47.826 0.00 0.00 41.22 2.85
94 95 3.317993 CCAAATAGGAAATGCCCTTACCG 59.682 47.826 0.00 0.00 41.22 4.02
95 96 2.271944 ATAGGAAATGCCCTTACCGC 57.728 50.000 0.00 0.00 37.74 5.68
96 97 0.181824 TAGGAAATGCCCTTACCGCC 59.818 55.000 0.00 0.00 37.74 6.13
97 98 1.076995 GGAAATGCCCTTACCGCCT 60.077 57.895 0.00 0.00 0.00 5.52
98 99 1.101635 GGAAATGCCCTTACCGCCTC 61.102 60.000 0.00 0.00 0.00 4.70
99 100 0.393808 GAAATGCCCTTACCGCCTCA 60.394 55.000 0.00 0.00 0.00 3.86
100 101 0.039035 AAATGCCCTTACCGCCTCAA 59.961 50.000 0.00 0.00 0.00 3.02
101 102 0.394352 AATGCCCTTACCGCCTCAAG 60.394 55.000 0.00 0.00 0.00 3.02
102 103 2.124695 GCCCTTACCGCCTCAAGG 60.125 66.667 0.00 0.00 40.93 3.61
116 117 4.102035 CCTCAAGGCTTATTGCAGAAAC 57.898 45.455 0.00 0.00 45.15 2.78
117 118 3.119352 CCTCAAGGCTTATTGCAGAAACC 60.119 47.826 0.00 0.00 45.15 3.27
118 119 3.495331 TCAAGGCTTATTGCAGAAACCA 58.505 40.909 0.00 0.00 45.15 3.67
119 120 3.894427 TCAAGGCTTATTGCAGAAACCAA 59.106 39.130 0.00 0.00 45.15 3.67
127 128 1.028905 TGCAGAAACCAAACTTCGGG 58.971 50.000 0.00 0.00 0.00 5.14
174 175 2.060383 CGAGCCCCTCAGTCCATCA 61.060 63.158 0.00 0.00 0.00 3.07
181 182 1.556373 CCTCAGTCCATCACAGGCCA 61.556 60.000 5.01 0.00 0.00 5.36
188 189 0.812811 CCATCACAGGCCACATCTCG 60.813 60.000 5.01 0.00 0.00 4.04
199 200 1.519455 ACATCTCGGCGCTGCTTAC 60.519 57.895 12.58 0.00 0.00 2.34
208 231 0.675522 GCGCTGCTTACACCCCTAAA 60.676 55.000 0.00 0.00 0.00 1.85
233 256 3.533606 ATAATCTCTGTGCTGCTTCGT 57.466 42.857 0.00 0.00 0.00 3.85
236 259 1.534729 TCTCTGTGCTGCTTCGTCTA 58.465 50.000 0.00 0.00 0.00 2.59
440 481 1.943340 GTGCTCCCTTGATTCCGATTC 59.057 52.381 0.00 0.00 0.00 2.52
469 510 1.479389 CCTCATAATCCCTTGGTGCCC 60.479 57.143 0.00 0.00 0.00 5.36
504 545 4.443034 GGGTTAGCTATCCTTCGATGTGTT 60.443 45.833 18.29 0.00 0.00 3.32
511 552 5.581085 GCTATCCTTCGATGTGTTGTTAGTT 59.419 40.000 0.00 0.00 0.00 2.24
609 705 9.066892 TCATGCAATACTATTAGGGTTCAATTC 57.933 33.333 0.00 0.00 0.00 2.17
610 706 8.849168 CATGCAATACTATTAGGGTTCAATTCA 58.151 33.333 0.00 0.00 0.00 2.57
611 707 8.995027 TGCAATACTATTAGGGTTCAATTCAT 57.005 30.769 0.00 0.00 0.00 2.57
612 708 9.420118 TGCAATACTATTAGGGTTCAATTCATT 57.580 29.630 0.00 0.00 0.00 2.57
615 723 8.848474 ATACTATTAGGGTTCAATTCATTCGG 57.152 34.615 0.00 0.00 0.00 4.30
617 725 7.116736 ACTATTAGGGTTCAATTCATTCGGTT 58.883 34.615 0.00 0.00 0.00 4.44
643 753 8.417106 TGGTTCAGTTTCATTGCAATACTAAAA 58.583 29.630 12.53 7.82 0.00 1.52
644 754 8.699749 GGTTCAGTTTCATTGCAATACTAAAAC 58.300 33.333 12.53 17.77 0.00 2.43
733 861 1.511850 TTCACATCAACTGCACCTCG 58.488 50.000 0.00 0.00 0.00 4.63
762 894 7.807907 CCCATACTTCTTTTTATGTCACACAAC 59.192 37.037 0.00 0.00 0.00 3.32
786 919 3.064931 GTGTGCTGTGGGTAGTTTACTC 58.935 50.000 0.00 0.00 0.00 2.59
787 920 2.969950 TGTGCTGTGGGTAGTTTACTCT 59.030 45.455 0.00 0.00 0.00 3.24
788 921 3.389983 TGTGCTGTGGGTAGTTTACTCTT 59.610 43.478 0.00 0.00 0.00 2.85
813 946 5.837829 TGGTTAATTTTCAGCCTAGGGATT 58.162 37.500 11.72 0.00 0.00 3.01
826 959 8.448008 TCAGCCTAGGGATTTATATTGTTTCAT 58.552 33.333 11.72 0.00 0.00 2.57
828 961 9.660544 AGCCTAGGGATTTATATTGTTTCATTT 57.339 29.630 11.72 0.00 0.00 2.32
852 985 0.107312 GAGTCCTGCTGCCATCATGT 60.107 55.000 0.00 0.00 0.00 3.21
865 998 1.671328 CATCATGTGCAGCTTCTCTGG 59.329 52.381 0.00 0.00 43.06 3.86
901 1044 2.275253 CACGTTTTGTTCGCTTTGTCAC 59.725 45.455 0.00 0.00 0.00 3.67
902 1045 2.095668 ACGTTTTGTTCGCTTTGTCACA 60.096 40.909 0.00 0.00 0.00 3.58
905 1048 1.080298 TTGTTCGCTTTGTCACACGT 58.920 45.000 0.00 0.00 0.00 4.49
909 1052 1.360820 TCGCTTTGTCACACGTCAAA 58.639 45.000 0.90 0.90 33.44 2.69
1042 1196 5.348997 AGTTGCTGCTACTCGTAATTCTTTC 59.651 40.000 10.93 0.00 0.00 2.62
1044 1198 6.203808 TGCTGCTACTCGTAATTCTTTCTA 57.796 37.500 0.00 0.00 0.00 2.10
1049 1203 6.918569 TGCTACTCGTAATTCTTTCTATCTGC 59.081 38.462 0.00 0.00 0.00 4.26
1210 1364 0.461961 GATGAGAAGGTCCTCCACGG 59.538 60.000 0.00 0.00 35.89 4.94
1211 1365 1.617947 ATGAGAAGGTCCTCCACGGC 61.618 60.000 0.00 0.00 35.89 5.68
1286 1446 7.579589 TGTTCAATACATTGCTAACATTTGC 57.420 32.000 5.54 0.00 37.68 3.68
1348 1508 1.369091 GCAAGGGTATGCACTCCGTG 61.369 60.000 11.44 11.44 45.70 4.94
1400 1560 7.880160 AGCCTTACTGTTATTATCATGCAAA 57.120 32.000 0.00 0.00 0.00 3.68
1515 1675 2.551032 CGTCTTGGTAAAACCCAGGTTC 59.449 50.000 1.78 0.00 37.50 3.62
1624 1810 9.209175 GGCGTGATTTCTTCTTATGTATATCTT 57.791 33.333 0.00 0.00 0.00 2.40
1632 1818 7.497595 TCTTCTTATGTATATCTTGCGTGGTT 58.502 34.615 0.00 0.00 0.00 3.67
1638 1824 6.117911 TGTATATCTTGCGTGGTTCATTTG 57.882 37.500 0.00 0.00 0.00 2.32
1668 1854 9.923143 GTTCCTTATTTAGGTTAATTTGCAACT 57.077 29.630 0.00 0.00 45.03 3.16
1703 1889 8.114331 AGACTTCATGTTTATGCTTGATTTGA 57.886 30.769 0.00 0.00 34.21 2.69
1704 1890 8.579006 AGACTTCATGTTTATGCTTGATTTGAA 58.421 29.630 0.00 0.00 34.21 2.69
1705 1891 9.362539 GACTTCATGTTTATGCTTGATTTGAAT 57.637 29.630 0.00 0.00 34.21 2.57
1706 1892 9.715121 ACTTCATGTTTATGCTTGATTTGAATT 57.285 25.926 0.00 0.00 34.21 2.17
1799 1985 5.651576 TGGCATTGTATGTTCTTTATGCTGA 59.348 36.000 0.00 0.00 38.64 4.26
1812 1998 9.899226 GTTCTTTATGCTGATATTTTCCCATAC 57.101 33.333 0.00 0.00 0.00 2.39
1840 2026 5.179533 TGTCAAACAGCCGTATATGCTTAA 58.820 37.500 0.00 0.00 36.81 1.85
1850 2036 5.681105 GCCGTATATGCTTAATGTTGTGTTG 59.319 40.000 0.00 0.00 0.00 3.33
1858 2044 4.261825 GCTTAATGTTGTGTTGGGCAGTTA 60.262 41.667 0.00 0.00 0.00 2.24
1869 2055 4.041075 TGTTGGGCAGTTATAGACAGACAA 59.959 41.667 0.00 0.00 0.00 3.18
1874 2060 6.099701 TGGGCAGTTATAGACAGACAACATAT 59.900 38.462 0.00 0.00 0.00 1.78
2029 2215 6.314018 TGTCGATGATGTTTGTTTATCTTGC 58.686 36.000 0.00 0.00 0.00 4.01
2053 2239 8.156165 TGCCCTCATGAAATTTGAATTTTAGTT 58.844 29.630 0.00 0.00 38.64 2.24
2086 2272 5.516339 GCCAAAAAGGATACAAATGTCATCG 59.484 40.000 0.00 0.00 41.22 3.84
2087 2273 5.516339 CCAAAAAGGATACAAATGTCATCGC 59.484 40.000 0.00 0.00 41.22 4.58
2088 2274 5.895636 AAAAGGATACAAATGTCATCGCA 57.104 34.783 0.00 0.00 41.41 5.10
2089 2275 5.895636 AAAGGATACAAATGTCATCGCAA 57.104 34.783 0.00 0.00 41.41 4.85
2091 2277 4.517285 AGGATACAAATGTCATCGCAACT 58.483 39.130 0.00 0.00 41.41 3.16
2219 2405 4.074970 ACTATAATGTTGCCATGGCTAGC 58.925 43.478 35.53 24.40 42.51 3.42
2250 2436 2.219458 CGCTCTCTGCAATTCATGGAT 58.781 47.619 0.00 0.00 43.06 3.41
2281 2469 1.542915 CAGCCATGTTTCAGGTTCTGG 59.457 52.381 0.00 0.00 31.51 3.86
2328 2522 7.241376 GCGACATATATAATTTGGCCTGTAAC 58.759 38.462 3.32 0.00 0.00 2.50
2338 2532 0.248289 GGCCTGTAACGAACCTGCTA 59.752 55.000 0.00 0.00 0.00 3.49
2344 2538 4.142687 CCTGTAACGAACCTGCTAAAATGG 60.143 45.833 0.00 0.00 0.00 3.16
2374 2573 1.003696 GGGTTCCCTGACTTCTCTTGG 59.996 57.143 0.00 0.00 0.00 3.61
2434 2639 3.742369 CCTGTTTCATTTGTGTTGGATGC 59.258 43.478 0.00 0.00 0.00 3.91
2506 2713 7.276794 GCATCTTGCATTGCTTGGATACATAC 61.277 42.308 10.49 0.00 45.99 2.39
2543 2750 5.860941 ACCACAAACACAATCCAAACATA 57.139 34.783 0.00 0.00 0.00 2.29
2615 2822 6.260050 GCTTGTAGTTTTGATCGGATGGATTA 59.740 38.462 0.00 0.00 34.82 1.75
2623 2830 3.648067 TGATCGGATGGATTAAGAGCCTT 59.352 43.478 0.00 0.00 34.82 4.35
2628 2835 4.202367 CGGATGGATTAAGAGCCTTAGGTT 60.202 45.833 0.00 0.00 30.79 3.50
2637 2844 1.279271 GAGCCTTAGGTTCTGGAGCAA 59.721 52.381 7.90 0.00 30.11 3.91
2705 2912 0.615331 CATGGTGGTGCTCCTGTACT 59.385 55.000 6.34 0.00 34.23 2.73
2922 3141 3.918977 CACGTCCACCCACACGGA 61.919 66.667 0.00 0.00 40.43 4.69
2924 3143 2.109387 CGTCCACCCACACGGAAA 59.891 61.111 0.00 0.00 31.67 3.13
2950 3175 3.246619 CTTCTTGTCGTCTTCCTGTAGC 58.753 50.000 0.00 0.00 0.00 3.58
2971 3220 1.579932 GTCGACGAGCACTTGGAGA 59.420 57.895 0.00 0.00 0.00 3.71
3079 3328 0.620410 ATGGGTAGTAGTGGCCAGCA 60.620 55.000 5.11 0.00 0.00 4.41
3156 3438 1.478510 CTCCGACAACAGCTCCAGTAT 59.521 52.381 0.00 0.00 0.00 2.12
3268 3554 1.948611 GCCGTCTGCATGAAAAGGGTA 60.949 52.381 0.00 0.00 40.77 3.69
3386 3672 3.121030 CTGGCGCCTCGTGAAAGG 61.121 66.667 29.70 2.51 39.62 3.11
3394 3680 2.203224 TCGTGAAAGGCCCGCAAA 60.203 55.556 0.00 0.00 0.00 3.68
3417 3703 0.179089 GCGAGCATCTCTGACATGGT 60.179 55.000 0.00 0.00 34.65 3.55
3525 3814 4.467769 TGGGATGGTGTAGTAGTAGTAGC 58.532 47.826 0.00 0.00 0.00 3.58
3811 4127 2.143122 TCGTGCGAGATTGAAAAGCTT 58.857 42.857 0.00 0.00 41.66 3.74
3816 4132 4.005650 TGCGAGATTGAAAAGCTTGATCT 58.994 39.130 0.00 7.14 41.66 2.75
3821 4137 7.010552 GCGAGATTGAAAAGCTTGATCTACTAA 59.989 37.037 0.00 0.00 41.66 2.24
3903 4223 9.502091 AACTTGCAGTTCTTTATGTAATCAGTA 57.498 29.630 0.00 0.00 31.77 2.74
3984 4304 2.439507 TGTCCCTATCAAAGATCAGGCC 59.560 50.000 0.00 0.00 0.00 5.19
3985 4305 2.057922 TCCCTATCAAAGATCAGGCCC 58.942 52.381 0.00 0.00 0.00 5.80
4099 4429 3.181474 GGTGTGGCTAGATTGACTCTACC 60.181 52.174 0.00 0.00 35.28 3.18
4238 4728 4.320275 GCCTTTAAACACTTGTGAGTAGCC 60.320 45.833 7.83 0.00 33.90 3.93
4243 4733 8.685838 TTTAAACACTTGTGAGTAGCCTAATT 57.314 30.769 7.83 0.00 33.90 1.40
4345 4998 8.256611 TGAGTATTGCAAAAGATGAGTAACTC 57.743 34.615 1.71 4.90 32.48 3.01
4569 5228 5.562890 GCAGGTTTGTCCTAAAATCTCACAC 60.563 44.000 0.00 0.00 46.24 3.82
4664 5331 5.930135 ACCAGAGTATGTGACTTCTTGTTT 58.070 37.500 0.00 0.00 39.06 2.83
4667 5334 7.134815 CCAGAGTATGTGACTTCTTGTTTTTG 58.865 38.462 0.00 0.00 39.06 2.44
4670 5337 8.184192 AGAGTATGTGACTTCTTGTTTTTGTTG 58.816 33.333 0.00 0.00 39.06 3.33
4733 5501 8.474006 AAAACCTGTTTTATGTGTTGTTCTTC 57.526 30.769 6.22 0.00 40.61 2.87
4750 5518 5.048504 TGTTCTTCAGATTTTGGTCTCATGC 60.049 40.000 0.00 0.00 0.00 4.06
4873 5643 0.546122 TAATCTCGCTTGCCATGGGT 59.454 50.000 15.13 0.00 0.00 4.51
4881 5651 1.229145 TTGCCATGGGTTTGGAGGG 60.229 57.895 15.13 0.00 39.25 4.30
4926 5696 5.900425 ACTAGATACTGTTCATGCTCAGTG 58.100 41.667 23.22 13.63 43.46 3.66
5283 6054 6.472163 GTGCTGGTTATTTCATTGGTTTATCG 59.528 38.462 0.00 0.00 0.00 2.92
5298 6074 7.323046 TGGTTTATCGTCGCAAATTTAAAAC 57.677 32.000 0.00 0.00 0.00 2.43
5467 6248 4.096382 AGGTGATACAATGCGAAAACATCC 59.904 41.667 0.00 0.00 0.00 3.51
5545 6326 8.907222 ATTGCTGTCTGAAATTTAAAATTGGT 57.093 26.923 0.00 0.00 0.00 3.67
5587 6370 8.155510 TCAGATTTGGATGAGAGAATATGGAAG 58.844 37.037 0.00 0.00 0.00 3.46
5713 6507 6.152932 TCCTGTTTCTACTACGTGTTTTCT 57.847 37.500 0.00 0.00 0.00 2.52
5714 6508 5.981315 TCCTGTTTCTACTACGTGTTTTCTG 59.019 40.000 0.00 0.00 0.00 3.02
5981 6792 0.321919 GTGCACCTGGATCTCAGCAA 60.322 55.000 5.22 0.00 42.05 3.91
6072 6904 7.197703 TGATAATGTCAGCGAAACGATACTTA 58.802 34.615 0.00 0.00 31.80 2.24
6234 7066 5.260027 ACTAATTCGTTTACACGCTGTTC 57.740 39.130 0.00 0.00 46.70 3.18
6282 7114 3.192541 TGCTCTGTTTGCAGTCTGTTA 57.807 42.857 0.93 0.00 43.05 2.41
6283 7115 3.743521 TGCTCTGTTTGCAGTCTGTTAT 58.256 40.909 0.93 0.00 43.05 1.89
6286 7118 5.067674 TGCTCTGTTTGCAGTCTGTTATTTT 59.932 36.000 0.93 0.00 43.05 1.82
6287 7119 6.262049 TGCTCTGTTTGCAGTCTGTTATTTTA 59.738 34.615 0.93 0.00 43.05 1.52
6288 7120 7.040478 TGCTCTGTTTGCAGTCTGTTATTTTAT 60.040 33.333 0.93 0.00 43.05 1.40
6289 7121 7.272084 GCTCTGTTTGCAGTCTGTTATTTTATG 59.728 37.037 0.93 0.00 43.05 1.90
6290 7122 7.083858 TCTGTTTGCAGTCTGTTATTTTATGC 58.916 34.615 0.93 0.00 43.05 3.14
6336 7170 8.699749 CCGTTTTGGAAAAGAAAATAATGAGTC 58.300 33.333 0.00 0.00 42.00 3.36
6423 7260 7.289587 AGACAATTTTCTTTCGGTTTTGTTG 57.710 32.000 0.00 0.00 0.00 3.33
6434 7271 3.309410 TCGGTTTTGTTGTCGTTACCTTC 59.691 43.478 0.00 0.00 0.00 3.46
6436 7273 3.243168 GGTTTTGTTGTCGTTACCTTCCC 60.243 47.826 0.00 0.00 0.00 3.97
6439 7276 1.004679 TTGTCGTTACCTTCCCGCC 60.005 57.895 0.00 0.00 0.00 6.13
6440 7277 2.507769 GTCGTTACCTTCCCGCCG 60.508 66.667 0.00 0.00 0.00 6.46
6441 7278 3.762247 TCGTTACCTTCCCGCCGG 61.762 66.667 0.00 0.00 0.00 6.13
6507 7344 0.606401 AACGGAGCCACTGGATTGTG 60.606 55.000 0.00 0.00 37.66 3.33
6535 7487 4.873746 TGAATCGGATAAGAGATGGGAC 57.126 45.455 0.00 0.00 0.00 4.46
6536 7488 3.578716 TGAATCGGATAAGAGATGGGACC 59.421 47.826 0.00 0.00 0.00 4.46
6559 7511 3.865745 CCTCGTGACCACTTGAACATATC 59.134 47.826 0.00 0.00 0.00 1.63
6574 7527 9.442047 CTTGAACATATCTTACAGAAACTCCTT 57.558 33.333 0.00 0.00 0.00 3.36
6575 7528 9.436957 TTGAACATATCTTACAGAAACTCCTTC 57.563 33.333 0.00 0.00 0.00 3.46
6593 7546 0.191064 TCCTCTCCCTTGACCTGTGT 59.809 55.000 0.00 0.00 0.00 3.72
6599 7552 4.422057 TCTCCCTTGACCTGTGTTATACA 58.578 43.478 0.00 0.00 37.78 2.29
6612 7565 0.906066 TTATACACGGCAAGCCCAGA 59.094 50.000 5.34 0.00 0.00 3.86
6618 7571 3.984732 GGCAAGCCCAGACCCCTT 61.985 66.667 0.00 0.00 0.00 3.95
6619 7572 2.361737 GCAAGCCCAGACCCCTTC 60.362 66.667 0.00 0.00 0.00 3.46
6637 7590 5.888724 CCCCTTCTTCTTCCTTAGGAATTTC 59.111 44.000 14.70 0.00 41.23 2.17
6642 7595 9.594478 CTTCTTCTTCCTTAGGAATTTCTCTAC 57.406 37.037 14.70 0.00 41.23 2.59
6650 7603 6.042208 CCTTAGGAATTTCTCTACGAGGGAAT 59.958 42.308 0.00 0.00 0.00 3.01
6789 7748 5.789710 ATAAGCTGTTTCATTTGCATTGC 57.210 34.783 0.46 0.46 0.00 3.56
6804 7763 8.618677 CATTTGCATTGCTATAGTCCTATATGG 58.381 37.037 10.49 0.00 37.10 2.74
6805 7764 6.239217 TGCATTGCTATAGTCCTATATGGG 57.761 41.667 10.49 0.00 36.20 4.00
6806 7765 5.130975 TGCATTGCTATAGTCCTATATGGGG 59.869 44.000 10.49 0.00 36.20 4.96
6807 7766 5.366768 GCATTGCTATAGTCCTATATGGGGA 59.633 44.000 5.12 0.23 36.20 4.81
6808 7767 6.126768 GCATTGCTATAGTCCTATATGGGGAA 60.127 42.308 5.12 0.00 34.35 3.97
6809 7768 7.420680 GCATTGCTATAGTCCTATATGGGGAAT 60.421 40.741 5.12 5.17 34.35 3.01
6810 7769 8.497745 CATTGCTATAGTCCTATATGGGGAATT 58.502 37.037 5.12 0.00 34.35 2.17
6811 7770 9.744125 ATTGCTATAGTCCTATATGGGGAATTA 57.256 33.333 5.12 1.16 34.35 1.40
6812 7771 9.744125 TTGCTATAGTCCTATATGGGGAATTAT 57.256 33.333 5.12 7.38 34.35 1.28
6817 7776 7.067496 AGTCCTATATGGGGAATTATATGCG 57.933 40.000 5.12 0.00 34.35 4.73
6818 7777 6.043243 AGTCCTATATGGGGAATTATATGCGG 59.957 42.308 5.12 0.00 34.35 5.69
6819 7778 5.003804 CCTATATGGGGAATTATATGCGGC 58.996 45.833 0.00 0.00 0.00 6.53
6820 7779 4.796110 ATATGGGGAATTATATGCGGCT 57.204 40.909 0.00 0.00 0.00 5.52
6821 7780 2.198827 TGGGGAATTATATGCGGCTG 57.801 50.000 0.00 0.00 0.00 4.85
6822 7781 0.811281 GGGGAATTATATGCGGCTGC 59.189 55.000 11.65 11.65 43.20 5.25
6837 7796 1.382522 GCTGCAAGGCTAGCATAACA 58.617 50.000 18.24 10.42 41.82 2.41
6838 7797 1.952296 GCTGCAAGGCTAGCATAACAT 59.048 47.619 18.24 0.00 41.82 2.71
6839 7798 3.141398 GCTGCAAGGCTAGCATAACATA 58.859 45.455 18.24 0.00 41.82 2.29
6840 7799 3.565482 GCTGCAAGGCTAGCATAACATAA 59.435 43.478 18.24 0.00 41.82 1.90
6841 7800 4.320057 GCTGCAAGGCTAGCATAACATAAG 60.320 45.833 18.24 3.81 41.82 1.73
6842 7801 4.136796 TGCAAGGCTAGCATAACATAAGG 58.863 43.478 18.24 0.00 37.02 2.69
6843 7802 3.057946 GCAAGGCTAGCATAACATAAGGC 60.058 47.826 18.24 0.71 0.00 4.35
6844 7803 4.136796 CAAGGCTAGCATAACATAAGGCA 58.863 43.478 18.24 0.00 35.36 4.75
6845 7804 4.437682 AGGCTAGCATAACATAAGGCAA 57.562 40.909 18.24 0.00 35.36 4.52
6846 7805 4.792068 AGGCTAGCATAACATAAGGCAAA 58.208 39.130 18.24 0.00 35.36 3.68
6847 7806 4.823989 AGGCTAGCATAACATAAGGCAAAG 59.176 41.667 18.24 0.00 35.36 2.77
6848 7807 4.580580 GGCTAGCATAACATAAGGCAAAGT 59.419 41.667 18.24 0.00 33.30 2.66
6849 7808 5.506317 GGCTAGCATAACATAAGGCAAAGTG 60.506 44.000 18.24 0.00 33.30 3.16
6850 7809 4.989279 AGCATAACATAAGGCAAAGTGG 57.011 40.909 0.00 0.00 0.00 4.00
6851 7810 3.131046 AGCATAACATAAGGCAAAGTGGC 59.869 43.478 0.00 0.00 44.10 5.01
6859 7818 3.549730 GCAAAGTGGCCAAGGGTT 58.450 55.556 7.24 0.00 0.00 4.11
6860 7819 1.367471 GCAAAGTGGCCAAGGGTTC 59.633 57.895 7.24 0.00 0.00 3.62
6861 7820 2.049435 CAAAGTGGCCAAGGGTTCC 58.951 57.895 7.24 0.00 0.00 3.62
6862 7821 0.758685 CAAAGTGGCCAAGGGTTCCA 60.759 55.000 7.24 0.00 0.00 3.53
6863 7822 0.190815 AAAGTGGCCAAGGGTTCCAT 59.809 50.000 7.24 0.00 31.83 3.41
6864 7823 1.080638 AAGTGGCCAAGGGTTCCATA 58.919 50.000 7.24 0.00 31.83 2.74
6865 7824 1.308877 AGTGGCCAAGGGTTCCATAT 58.691 50.000 7.24 0.00 31.83 1.78
6866 7825 1.063717 AGTGGCCAAGGGTTCCATATG 60.064 52.381 7.24 0.00 31.83 1.78
6867 7826 0.261402 TGGCCAAGGGTTCCATATGG 59.739 55.000 16.25 16.25 0.00 2.74
6868 7827 0.469892 GGCCAAGGGTTCCATATGGG 60.470 60.000 21.78 4.04 35.41 4.00
6869 7828 0.469892 GCCAAGGGTTCCATATGGGG 60.470 60.000 21.78 13.46 37.22 4.96
6870 7829 1.231018 CCAAGGGTTCCATATGGGGA 58.769 55.000 21.78 8.20 37.22 4.81
6871 7830 1.573376 CCAAGGGTTCCATATGGGGAA 59.427 52.381 21.78 6.85 44.50 3.97
6881 7840 5.047566 TCCATATGGGGAATTATATGCGG 57.952 43.478 21.78 0.00 36.43 5.69
6882 7841 3.569701 CCATATGGGGAATTATATGCGGC 59.430 47.826 14.52 0.00 36.43 6.53
6883 7842 4.464008 CATATGGGGAATTATATGCGGCT 58.536 43.478 0.00 0.00 32.42 5.52
6884 7843 2.198827 TGGGGAATTATATGCGGCTG 57.801 50.000 0.00 0.00 0.00 4.85
6885 7844 0.811281 GGGGAATTATATGCGGCTGC 59.189 55.000 11.65 11.65 43.20 5.25
6895 7854 4.171416 GCGGCTGCAAGTGCTAGC 62.171 66.667 14.08 8.10 42.66 3.42
6896 7855 2.743538 CGGCTGCAAGTGCTAGCA 60.744 61.111 14.93 14.93 42.64 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.413558 GTTATAGCTGTTTCCGCAAACG 58.586 45.455 0.00 0.00 44.41 3.60
37 38 3.189702 TGGTTATAGCTGTTTCCGCAAAC 59.810 43.478 0.00 0.00 42.16 2.93
38 39 3.413327 TGGTTATAGCTGTTTCCGCAAA 58.587 40.909 0.00 0.00 0.00 3.68
39 40 3.006940 CTGGTTATAGCTGTTTCCGCAA 58.993 45.455 0.00 0.00 0.00 4.85
40 41 2.627945 CTGGTTATAGCTGTTTCCGCA 58.372 47.619 0.00 0.00 0.00 5.69
41 42 1.330829 GCTGGTTATAGCTGTTTCCGC 59.669 52.381 0.00 1.27 40.52 5.54
42 43 1.593006 CGCTGGTTATAGCTGTTTCCG 59.407 52.381 0.00 0.00 41.51 4.30
43 44 1.330829 GCGCTGGTTATAGCTGTTTCC 59.669 52.381 0.00 0.00 41.51 3.13
44 45 1.330829 GGCGCTGGTTATAGCTGTTTC 59.669 52.381 7.64 0.00 41.51 2.78
45 46 1.065418 AGGCGCTGGTTATAGCTGTTT 60.065 47.619 7.64 0.00 41.51 2.83
46 47 0.541863 AGGCGCTGGTTATAGCTGTT 59.458 50.000 7.64 0.00 41.51 3.16
47 48 0.179073 CAGGCGCTGGTTATAGCTGT 60.179 55.000 7.64 0.00 41.51 4.40
48 49 1.502163 GCAGGCGCTGGTTATAGCTG 61.502 60.000 7.64 3.53 41.51 4.24
49 50 1.227674 GCAGGCGCTGGTTATAGCT 60.228 57.895 7.64 0.00 41.51 3.32
50 51 1.502163 CTGCAGGCGCTGGTTATAGC 61.502 60.000 7.64 0.67 39.64 2.97
51 52 1.502163 GCTGCAGGCGCTGGTTATAG 61.502 60.000 17.12 0.00 39.64 1.31
52 53 1.523711 GCTGCAGGCGCTGGTTATA 60.524 57.895 17.12 0.00 39.64 0.98
53 54 2.825836 GCTGCAGGCGCTGGTTAT 60.826 61.111 17.12 0.00 39.64 1.89
62 63 2.410469 CTATTTGGCGCTGCAGGC 59.590 61.111 17.12 16.58 37.64 4.85
63 64 1.031571 TTCCTATTTGGCGCTGCAGG 61.032 55.000 17.12 6.85 35.26 4.85
64 65 0.810648 TTTCCTATTTGGCGCTGCAG 59.189 50.000 10.11 10.11 35.26 4.41
65 66 1.134753 CATTTCCTATTTGGCGCTGCA 59.865 47.619 7.64 0.00 35.26 4.41
66 67 1.843992 CATTTCCTATTTGGCGCTGC 58.156 50.000 7.64 0.00 35.26 5.25
67 68 1.536709 GGCATTTCCTATTTGGCGCTG 60.537 52.381 7.64 0.00 35.26 5.18
68 69 0.746659 GGCATTTCCTATTTGGCGCT 59.253 50.000 7.64 0.00 35.26 5.92
69 70 0.249447 GGGCATTTCCTATTTGGCGC 60.249 55.000 0.00 0.00 36.84 6.53
70 71 1.402787 AGGGCATTTCCTATTTGGCG 58.597 50.000 0.00 0.00 36.84 5.69
71 72 3.069586 GGTAAGGGCATTTCCTATTTGGC 59.930 47.826 0.00 0.00 35.80 4.52
72 73 3.317993 CGGTAAGGGCATTTCCTATTTGG 59.682 47.826 6.01 0.00 35.80 3.28
73 74 3.243401 GCGGTAAGGGCATTTCCTATTTG 60.243 47.826 6.01 0.00 35.80 2.32
74 75 2.956333 GCGGTAAGGGCATTTCCTATTT 59.044 45.455 6.01 0.00 35.80 1.40
75 76 2.583143 GCGGTAAGGGCATTTCCTATT 58.417 47.619 6.01 0.00 35.80 1.73
76 77 1.202891 GGCGGTAAGGGCATTTCCTAT 60.203 52.381 6.01 0.00 35.80 2.57
77 78 0.181824 GGCGGTAAGGGCATTTCCTA 59.818 55.000 6.01 0.00 35.80 2.94
78 79 1.076995 GGCGGTAAGGGCATTTCCT 60.077 57.895 6.01 0.00 39.17 3.36
79 80 1.076995 AGGCGGTAAGGGCATTTCC 60.077 57.895 0.00 0.00 34.40 3.13
80 81 0.393808 TGAGGCGGTAAGGGCATTTC 60.394 55.000 0.00 0.00 34.40 2.17
81 82 0.039035 TTGAGGCGGTAAGGGCATTT 59.961 50.000 0.00 0.00 34.40 2.32
82 83 0.394352 CTTGAGGCGGTAAGGGCATT 60.394 55.000 0.00 0.00 34.40 3.56
83 84 1.224592 CTTGAGGCGGTAAGGGCAT 59.775 57.895 0.00 0.00 34.40 4.40
84 85 2.668632 CTTGAGGCGGTAAGGGCA 59.331 61.111 0.00 0.00 34.40 5.36
85 86 2.124695 CCTTGAGGCGGTAAGGGC 60.125 66.667 8.88 0.00 39.79 5.19
95 96 3.119352 GGTTTCTGCAATAAGCCTTGAGG 60.119 47.826 6.99 0.00 44.83 3.86
96 97 3.507233 TGGTTTCTGCAATAAGCCTTGAG 59.493 43.478 13.32 0.00 44.83 3.02
97 98 3.495331 TGGTTTCTGCAATAAGCCTTGA 58.505 40.909 13.32 0.00 44.83 3.02
98 99 3.940209 TGGTTTCTGCAATAAGCCTTG 57.060 42.857 13.32 0.00 44.83 3.61
99 100 4.344968 AGTTTGGTTTCTGCAATAAGCCTT 59.655 37.500 13.32 0.00 44.83 4.35
100 101 3.897505 AGTTTGGTTTCTGCAATAAGCCT 59.102 39.130 13.32 0.61 44.83 4.58
101 102 4.257267 AGTTTGGTTTCTGCAATAAGCC 57.743 40.909 7.23 7.23 44.83 4.35
102 103 4.382754 CGAAGTTTGGTTTCTGCAATAAGC 59.617 41.667 0.00 0.00 45.96 3.09
103 104 4.917415 CCGAAGTTTGGTTTCTGCAATAAG 59.083 41.667 0.29 0.00 0.00 1.73
104 105 4.261825 CCCGAAGTTTGGTTTCTGCAATAA 60.262 41.667 8.41 0.00 0.00 1.40
105 106 3.254657 CCCGAAGTTTGGTTTCTGCAATA 59.745 43.478 8.41 0.00 0.00 1.90
106 107 2.035832 CCCGAAGTTTGGTTTCTGCAAT 59.964 45.455 8.41 0.00 0.00 3.56
107 108 1.407258 CCCGAAGTTTGGTTTCTGCAA 59.593 47.619 8.41 0.00 0.00 4.08
108 109 1.028905 CCCGAAGTTTGGTTTCTGCA 58.971 50.000 8.41 0.00 0.00 4.41
109 110 0.318699 GCCCGAAGTTTGGTTTCTGC 60.319 55.000 8.41 0.25 0.00 4.26
110 111 0.313987 GGCCCGAAGTTTGGTTTCTG 59.686 55.000 8.41 0.00 0.00 3.02
111 112 0.826256 GGGCCCGAAGTTTGGTTTCT 60.826 55.000 5.69 0.00 0.00 2.52
112 113 0.826256 AGGGCCCGAAGTTTGGTTTC 60.826 55.000 18.44 0.00 0.00 2.78
113 114 0.826256 GAGGGCCCGAAGTTTGGTTT 60.826 55.000 18.44 0.00 0.00 3.27
114 115 1.228459 GAGGGCCCGAAGTTTGGTT 60.228 57.895 18.44 0.00 0.00 3.67
115 116 2.434774 GAGGGCCCGAAGTTTGGT 59.565 61.111 18.44 0.00 0.00 3.67
116 117 2.361230 GGAGGGCCCGAAGTTTGG 60.361 66.667 18.44 1.59 0.00 3.28
117 118 2.361230 GGGAGGGCCCGAAGTTTG 60.361 66.667 18.44 0.00 46.48 2.93
127 128 2.195956 GGCCACATAAGGGAGGGC 59.804 66.667 0.00 0.00 43.86 5.19
149 150 3.612247 CTGAGGGGCTCGTGGTTGG 62.612 68.421 0.00 0.00 32.35 3.77
162 163 1.222936 GGCCTGTGATGGACTGAGG 59.777 63.158 0.00 0.00 30.82 3.86
181 182 1.519455 GTAAGCAGCGCCGAGATGT 60.519 57.895 2.29 0.00 38.76 3.06
214 237 2.493675 AGACGAAGCAGCACAGAGATTA 59.506 45.455 0.00 0.00 0.00 1.75
215 238 1.274728 AGACGAAGCAGCACAGAGATT 59.725 47.619 0.00 0.00 0.00 2.40
223 246 0.747255 GAGGGATAGACGAAGCAGCA 59.253 55.000 0.00 0.00 0.00 4.41
233 256 1.232216 GGACGGTGGGAGGGATAGA 59.768 63.158 0.00 0.00 0.00 1.98
236 259 2.041819 GAGGACGGTGGGAGGGAT 60.042 66.667 0.00 0.00 0.00 3.85
306 330 2.586425 CCTTCCAAGTTGAAAGAGCCA 58.414 47.619 3.00 0.00 0.00 4.75
314 338 1.228552 GGCAGCCCTTCCAAGTTGA 60.229 57.895 3.87 0.00 0.00 3.18
390 424 3.917760 GAGGGGATCCGACGGCAG 61.918 72.222 9.66 0.00 38.33 4.85
440 481 3.863086 AGGGATTATGAGGACACTAGGG 58.137 50.000 0.00 0.00 0.00 3.53
504 545 4.083003 GGCGTTCCATCAATCAAACTAACA 60.083 41.667 0.00 0.00 0.00 2.41
511 552 1.462616 CAGGGCGTTCCATCAATCAA 58.537 50.000 0.14 0.00 38.24 2.57
564 660 6.029607 GCATGAAACTGCATCGAATTTAAGA 58.970 36.000 0.00 0.00 41.87 2.10
565 661 5.801444 TGCATGAAACTGCATCGAATTTAAG 59.199 36.000 0.00 0.00 46.76 1.85
566 662 5.707931 TGCATGAAACTGCATCGAATTTAA 58.292 33.333 0.00 0.00 46.76 1.52
567 663 5.307926 TGCATGAAACTGCATCGAATTTA 57.692 34.783 0.00 0.00 46.76 1.40
568 664 4.177165 TGCATGAAACTGCATCGAATTT 57.823 36.364 0.00 0.00 46.76 1.82
609 705 3.980646 TGAAACTGAACCAACCGAATG 57.019 42.857 0.00 0.00 0.00 2.67
610 706 4.795962 GCAATGAAACTGAACCAACCGAAT 60.796 41.667 0.00 0.00 0.00 3.34
611 707 3.490078 GCAATGAAACTGAACCAACCGAA 60.490 43.478 0.00 0.00 0.00 4.30
612 708 2.034053 GCAATGAAACTGAACCAACCGA 59.966 45.455 0.00 0.00 0.00 4.69
615 723 6.215845 AGTATTGCAATGAAACTGAACCAAC 58.784 36.000 22.27 7.08 0.00 3.77
617 725 7.517614 TTAGTATTGCAATGAAACTGAACCA 57.482 32.000 22.27 0.00 0.00 3.67
643 753 5.116180 CGTGGTACAATATCCATCTTGTGT 58.884 41.667 0.00 0.00 44.16 3.72
644 754 4.024893 GCGTGGTACAATATCCATCTTGTG 60.025 45.833 0.00 0.00 44.16 3.33
659 777 2.446282 CAAAACAACACAGCGTGGTAC 58.554 47.619 12.18 0.00 37.94 3.34
718 846 1.021390 GGACCGAGGTGCAGTTGATG 61.021 60.000 8.95 0.00 36.45 3.07
733 861 6.657541 TGTGACATAAAAAGAAGTATGGGACC 59.342 38.462 0.00 0.00 32.92 4.46
762 894 3.112075 CTACCCACAGCACACGCG 61.112 66.667 3.53 3.53 45.49 6.01
786 919 5.358160 CCCTAGGCTGAAAATTAACCAGAAG 59.642 44.000 2.05 0.00 0.00 2.85
787 920 5.014755 TCCCTAGGCTGAAAATTAACCAGAA 59.985 40.000 2.05 0.00 0.00 3.02
788 921 4.538490 TCCCTAGGCTGAAAATTAACCAGA 59.462 41.667 2.05 0.00 0.00 3.86
826 959 1.419762 TGGCAGCAGGACTCAACTAAA 59.580 47.619 0.00 0.00 0.00 1.85
828 961 1.208052 GATGGCAGCAGGACTCAACTA 59.792 52.381 0.00 0.00 0.00 2.24
832 965 0.107361 CATGATGGCAGCAGGACTCA 60.107 55.000 12.63 0.00 0.00 3.41
833 966 0.107312 ACATGATGGCAGCAGGACTC 60.107 55.000 25.03 0.00 0.00 3.36
852 985 0.535780 CAACCACCAGAGAAGCTGCA 60.536 55.000 1.02 0.00 43.50 4.41
865 998 2.896801 CGTGCCTCTGTGCAACCAC 61.897 63.158 0.00 0.00 44.11 4.16
901 1044 3.242936 ACCTGGAACGAATTTTTGACGTG 60.243 43.478 0.00 0.00 40.10 4.49
902 1045 2.946990 ACCTGGAACGAATTTTTGACGT 59.053 40.909 0.00 0.00 41.97 4.34
905 1048 7.045126 ACAATAACCTGGAACGAATTTTTGA 57.955 32.000 0.00 0.00 0.00 2.69
909 1052 7.269316 ACAAAACAATAACCTGGAACGAATTT 58.731 30.769 0.00 0.00 0.00 1.82
1042 1196 2.168106 ACACTGGCTTCTCTGCAGATAG 59.832 50.000 18.63 17.87 34.04 2.08
1044 1198 0.982704 ACACTGGCTTCTCTGCAGAT 59.017 50.000 18.63 0.00 34.04 2.90
1049 1203 1.233285 GCACCACACTGGCTTCTCTG 61.233 60.000 0.00 0.00 42.67 3.35
1286 1446 3.778954 AACCAAGGGAGAAAGACAGAG 57.221 47.619 0.00 0.00 0.00 3.35
1400 1560 8.617290 ACGTTTGTAGAGGAAATAATTCAGTT 57.383 30.769 0.00 0.00 37.29 3.16
1548 1708 7.227116 ACAATGAGGAAACATGGAAAAACAATG 59.773 33.333 0.00 0.00 0.00 2.82
1624 1810 1.686355 ACTTCCAAATGAACCACGCA 58.314 45.000 0.00 0.00 0.00 5.24
1668 1854 7.764443 GCATAAACATGAAGTCTCAGGTACTAA 59.236 37.037 0.00 0.00 45.54 2.24
1674 1860 5.645067 TCAAGCATAAACATGAAGTCTCAGG 59.355 40.000 0.00 0.00 39.31 3.86
1725 1911 9.650539 CCACAAATCAACATCCAATAATTTACA 57.349 29.630 0.00 0.00 0.00 2.41
1726 1912 9.097257 CCCACAAATCAACATCCAATAATTTAC 57.903 33.333 0.00 0.00 0.00 2.01
1727 1913 8.820831 ACCCACAAATCAACATCCAATAATTTA 58.179 29.630 0.00 0.00 0.00 1.40
1728 1914 7.688343 ACCCACAAATCAACATCCAATAATTT 58.312 30.769 0.00 0.00 0.00 1.82
1799 1985 5.387113 TGACAGCCTGTATGGGAAAATAT 57.613 39.130 0.00 0.00 36.00 1.28
1840 2026 4.700213 GTCTATAACTGCCCAACACAACAT 59.300 41.667 0.00 0.00 0.00 2.71
1850 2036 4.202245 TGTTGTCTGTCTATAACTGCCC 57.798 45.455 0.00 0.00 0.00 5.36
1913 2099 4.700692 GGGGGACTCATTACTTTCTTTCAC 59.299 45.833 0.00 0.00 0.00 3.18
1926 2112 2.122768 CTTAGCTGAAGGGGGACTCAT 58.877 52.381 0.00 0.00 0.00 2.90
1927 2113 1.573108 CTTAGCTGAAGGGGGACTCA 58.427 55.000 0.00 0.00 0.00 3.41
1996 2182 5.106317 ACAAACATCATCGACATGGTAAACC 60.106 40.000 10.23 0.00 0.00 3.27
2008 2194 5.036737 GGGCAAGATAAACAAACATCATCG 58.963 41.667 0.00 0.00 0.00 3.84
2009 2195 6.127647 TGAGGGCAAGATAAACAAACATCATC 60.128 38.462 0.00 0.00 0.00 2.92
2029 2215 9.709495 TCAACTAAAATTCAAATTTCATGAGGG 57.291 29.630 0.00 0.00 37.62 4.30
2053 2239 2.692709 TCCTTTTTGGCCCTTGATCA 57.307 45.000 0.00 0.00 35.26 2.92
2086 2272 5.403466 GGTCTGATGAACAATGAAAAGTTGC 59.597 40.000 0.00 0.00 0.00 4.17
2087 2273 6.742109 AGGTCTGATGAACAATGAAAAGTTG 58.258 36.000 0.00 0.00 30.86 3.16
2088 2274 6.966534 AGGTCTGATGAACAATGAAAAGTT 57.033 33.333 0.00 0.00 30.86 2.66
2089 2275 6.966534 AAGGTCTGATGAACAATGAAAAGT 57.033 33.333 0.00 0.00 30.86 2.66
2091 2277 6.775142 TGGTAAGGTCTGATGAACAATGAAAA 59.225 34.615 0.00 0.00 30.86 2.29
2219 2405 3.665173 GCAGAGAGCGTCAAATTAAGG 57.335 47.619 0.00 0.00 0.00 2.69
2250 2436 0.112218 ACATGGCTGGCTTGTTGGTA 59.888 50.000 15.55 0.00 0.00 3.25
2328 2522 2.476185 CGCTTCCATTTTAGCAGGTTCG 60.476 50.000 0.00 0.00 37.23 3.95
2338 2532 1.000359 CCCTCCCCGCTTCCATTTT 60.000 57.895 0.00 0.00 0.00 1.82
2368 2567 3.056322 CAGCTTCCCCAAATTTCCAAGAG 60.056 47.826 0.00 0.00 0.00 2.85
2374 2573 3.573967 TCAGTTCAGCTTCCCCAAATTTC 59.426 43.478 0.00 0.00 0.00 2.17
2506 2713 3.961477 TGTGGTTCGAGTTTCAATGTG 57.039 42.857 0.00 0.00 0.00 3.21
2508 2715 4.499040 GTGTTTGTGGTTCGAGTTTCAATG 59.501 41.667 0.00 0.00 0.00 2.82
2515 2722 2.616842 GGATTGTGTTTGTGGTTCGAGT 59.383 45.455 0.00 0.00 0.00 4.18
2516 2723 2.616376 TGGATTGTGTTTGTGGTTCGAG 59.384 45.455 0.00 0.00 0.00 4.04
2543 2750 5.823312 TCATATCCATCCTAGCAATGCAAT 58.177 37.500 8.35 0.00 0.00 3.56
2615 2822 1.557371 GCTCCAGAACCTAAGGCTCTT 59.443 52.381 0.00 0.00 0.00 2.85
2623 2830 2.770164 GCTCTTTGCTCCAGAACCTA 57.230 50.000 0.00 0.00 38.95 3.08
2800 3019 2.113986 GTGGTGGCCAAGAGTGCT 59.886 61.111 7.24 0.00 34.18 4.40
2861 3080 0.165944 GTGAACATTGGCGACTTCCG 59.834 55.000 0.00 0.00 42.21 4.30
2872 3091 2.616330 CGCGCTGGTGGTGAACATT 61.616 57.895 5.56 0.00 0.00 2.71
2950 3175 2.805353 CAAGTGCTCGTCGACGGG 60.805 66.667 35.05 33.98 44.00 5.28
2965 3214 4.329545 GCTGTGGGCGGTCTCCAA 62.330 66.667 0.00 0.00 35.86 3.53
3056 3305 1.576757 TGGCCACTACTACCCATCCTA 59.423 52.381 0.00 0.00 0.00 2.94
3079 3328 2.037847 GCATGCCTGGAGGGGTTT 59.962 61.111 6.36 0.00 35.18 3.27
3132 3414 3.575351 GAGCTGTTGTCGGAGGCGT 62.575 63.158 0.00 0.00 28.88 5.68
3268 3554 2.511600 GCGGCCAACTAGCACGAT 60.512 61.111 2.24 0.00 0.00 3.73
3337 3623 0.896940 CGCCCTACTATAGCCGGGAA 60.897 60.000 24.24 0.00 39.08 3.97
3394 3680 3.143515 TCAGAGATGCTCGCGGCT 61.144 61.111 18.14 6.27 42.39 5.52
3504 3790 4.467769 TGCTACTACTACTACACCATCCC 58.532 47.826 0.00 0.00 0.00 3.85
3698 3999 0.679960 TCCGACTCTGATCGCCTTCA 60.680 55.000 0.00 0.00 40.87 3.02
3839 4155 3.690460 AGCAGTTGGGAAAAGATAGGTG 58.310 45.455 0.00 0.00 0.00 4.00
3848 4164 3.084039 CTCTTGCATAGCAGTTGGGAAA 58.916 45.455 0.00 0.00 40.61 3.13
3957 4277 7.282585 CCTGATCTTTGATAGGGACACAATTA 58.717 38.462 0.00 0.00 0.00 1.40
3958 4278 6.125029 CCTGATCTTTGATAGGGACACAATT 58.875 40.000 0.00 0.00 0.00 2.32
3964 4284 2.224646 GGGCCTGATCTTTGATAGGGAC 60.225 54.545 0.84 0.00 0.00 4.46
3978 4298 0.923358 AATTACCATTCGGGGCCTGA 59.077 50.000 12.08 12.08 42.91 3.86
3984 4304 5.006358 CGAACTAGTGAAATTACCATTCGGG 59.994 44.000 0.00 0.00 44.81 5.14
3985 4305 5.808540 TCGAACTAGTGAAATTACCATTCGG 59.191 40.000 0.00 0.00 37.57 4.30
4188 4678 3.452264 AGCATTGTCCTAGTCATGTGCTA 59.548 43.478 16.27 0.17 36.30 3.49
4220 4710 7.446769 TGAATTAGGCTACTCACAAGTGTTTA 58.553 34.615 0.00 0.00 36.92 2.01
4261 4912 8.336235 ACACTTTTATGATTTCCATCCTTAGGA 58.664 33.333 2.37 2.37 36.71 2.94
4263 4914 7.917505 GCACACTTTTATGATTTCCATCCTTAG 59.082 37.037 0.00 0.00 36.71 2.18
4557 5216 6.811253 AATAACAAGCCGTGTGAGATTTTA 57.189 33.333 0.00 0.00 40.60 1.52
4664 5331 7.209471 AGTTCTCAAGTACAACAACAACAAA 57.791 32.000 0.00 0.00 0.00 2.83
4667 5334 5.490213 CGAGTTCTCAAGTACAACAACAAC 58.510 41.667 0.00 0.00 0.00 3.32
4670 5337 4.025979 CACCGAGTTCTCAAGTACAACAAC 60.026 45.833 0.00 0.00 0.00 3.32
4733 5501 3.760151 TGGAAGCATGAGACCAAAATCTG 59.240 43.478 0.00 0.00 0.00 2.90
4750 5518 7.621428 AATGAGTAATGACTGATTGTGGAAG 57.379 36.000 0.00 0.00 38.00 3.46
4873 5643 7.499292 CATTAATATTTGCATCACCCTCCAAA 58.501 34.615 0.00 0.00 0.00 3.28
4926 5696 4.147219 AGAACAAGCTTTTGTGCGATAC 57.853 40.909 0.00 0.00 35.62 2.24
5056 5826 8.677148 ACTGAACTTAAAATAGAGTTTGCAGA 57.323 30.769 10.17 0.00 36.31 4.26
5283 6054 8.608737 GAAGATTTTCGTTTTAAATTTGCGAC 57.391 30.769 0.00 0.00 0.00 5.19
5467 6248 5.832595 TGAGAGGAGAAATGACATCCTAGAG 59.167 44.000 0.00 0.00 43.57 2.43
5545 6326 6.208644 CAAATCTGAAGAAAAGGCGAAGAAA 58.791 36.000 0.00 0.00 0.00 2.52
5587 6370 1.449956 CTCCTCCTCTTGCTGCTGC 60.450 63.158 8.89 8.89 40.20 5.25
5713 6507 0.808060 TGCAAGTCTCGCGTTCAACA 60.808 50.000 5.77 0.00 0.00 3.33
5714 6508 0.111089 CTGCAAGTCTCGCGTTCAAC 60.111 55.000 5.77 0.10 0.00 3.18
5763 6562 8.267183 TCATACCATGTCATTACAAACTCTCAT 58.733 33.333 0.00 0.00 39.58 2.90
5765 6564 8.492673 TTCATACCATGTCATTACAAACTCTC 57.507 34.615 0.00 0.00 39.58 3.20
5981 6792 1.709578 TCAGAGCTGTGTCTGACCTT 58.290 50.000 11.09 0.00 46.52 3.50
6014 6841 3.326747 CAACAAGGCTCCAGTACACTAC 58.673 50.000 0.00 0.00 0.00 2.73
6234 7066 1.629013 TCTCGCAAGCTGATACAACG 58.371 50.000 0.00 0.00 37.18 4.10
6286 7118 7.701924 CGGAGAATTTGCAAGAATAAAAGCATA 59.298 33.333 0.00 0.00 36.80 3.14
6287 7119 6.532657 CGGAGAATTTGCAAGAATAAAAGCAT 59.467 34.615 0.00 0.00 36.80 3.79
6288 7120 5.863397 CGGAGAATTTGCAAGAATAAAAGCA 59.137 36.000 0.00 0.00 34.79 3.91
6289 7121 5.863935 ACGGAGAATTTGCAAGAATAAAAGC 59.136 36.000 0.00 0.00 0.00 3.51
6290 7122 7.873739 AACGGAGAATTTGCAAGAATAAAAG 57.126 32.000 0.00 0.00 0.00 2.27
6331 7165 9.862149 TCCTAACTTATGTCATATACAGACTCA 57.138 33.333 8.21 0.00 42.70 3.41
6343 7179 9.197306 TCTTTATGCTACTCCTAACTTATGTCA 57.803 33.333 0.00 0.00 0.00 3.58
6371 7208 6.767524 ACTTGTCAGTTTTGTCATAAACCA 57.232 33.333 0.00 0.00 38.49 3.67
6373 7210 9.997482 TTCTAACTTGTCAGTTTTGTCATAAAC 57.003 29.630 0.00 0.00 40.66 2.01
6389 7226 8.129211 CCGAAAGAAAATTGTCTTCTAACTTGT 58.871 33.333 11.37 0.00 36.84 3.16
6423 7260 2.507769 CGGCGGGAAGGTAACGAC 60.508 66.667 0.00 0.00 46.39 4.34
6439 7276 1.393539 CAGTTTTCACTGGATACGCCG 59.606 52.381 0.00 0.00 46.10 6.46
6507 7344 7.432869 CCATCTCTTATCCGATTCATCTATCC 58.567 42.308 0.00 0.00 0.00 2.59
6535 7487 0.602905 GTTCAAGTGGTCACGAGGGG 60.603 60.000 0.00 0.00 36.20 4.79
6536 7488 0.105964 TGTTCAAGTGGTCACGAGGG 59.894 55.000 0.00 0.00 36.20 4.30
6559 7511 4.081365 GGGAGAGGAAGGAGTTTCTGTAAG 60.081 50.000 0.00 0.00 36.03 2.34
6574 7527 0.191064 ACACAGGTCAAGGGAGAGGA 59.809 55.000 0.00 0.00 0.00 3.71
6575 7528 1.059913 AACACAGGTCAAGGGAGAGG 58.940 55.000 0.00 0.00 0.00 3.69
6593 7546 0.906066 TCTGGGCTTGCCGTGTATAA 59.094 50.000 5.49 0.00 0.00 0.98
6612 7565 3.579742 TCCTAAGGAAGAAGAAGGGGT 57.420 47.619 0.00 0.00 0.00 4.95
6616 7569 9.594478 GTAGAGAAATTCCTAAGGAAGAAGAAG 57.406 37.037 0.00 0.00 45.48 2.85
6617 7570 8.251721 CGTAGAGAAATTCCTAAGGAAGAAGAA 58.748 37.037 0.00 0.00 45.48 2.52
6618 7571 7.614583 TCGTAGAGAAATTCCTAAGGAAGAAGA 59.385 37.037 0.00 0.00 45.48 2.87
6619 7572 7.773149 TCGTAGAGAAATTCCTAAGGAAGAAG 58.227 38.462 0.00 0.00 45.48 2.85
6755 7712 8.674263 ATGAAACAGCTTATAGGAGAAATCAG 57.326 34.615 0.00 0.00 0.00 2.90
6763 7720 7.259882 CAATGCAAATGAAACAGCTTATAGGA 58.740 34.615 0.00 0.00 0.00 2.94
6770 7729 3.396260 AGCAATGCAAATGAAACAGCT 57.604 38.095 8.35 0.00 0.00 4.24
6804 7763 1.533625 TGCAGCCGCATATAATTCCC 58.466 50.000 0.00 0.00 45.36 3.97
6816 7775 0.815213 TTATGCTAGCCTTGCAGCCG 60.815 55.000 13.29 0.00 44.04 5.52
6817 7776 0.665298 GTTATGCTAGCCTTGCAGCC 59.335 55.000 13.29 0.00 44.04 4.85
6818 7777 1.382522 TGTTATGCTAGCCTTGCAGC 58.617 50.000 13.29 0.79 44.04 5.25
6819 7778 4.214971 CCTTATGTTATGCTAGCCTTGCAG 59.785 45.833 13.29 0.00 44.04 4.41
6820 7779 4.136796 CCTTATGTTATGCTAGCCTTGCA 58.863 43.478 13.29 2.74 44.95 4.08
6821 7780 3.057946 GCCTTATGTTATGCTAGCCTTGC 60.058 47.826 13.29 0.80 0.00 4.01
6822 7781 4.136796 TGCCTTATGTTATGCTAGCCTTG 58.863 43.478 13.29 0.00 0.00 3.61
6823 7782 4.437682 TGCCTTATGTTATGCTAGCCTT 57.562 40.909 13.29 2.04 0.00 4.35
6824 7783 4.437682 TTGCCTTATGTTATGCTAGCCT 57.562 40.909 13.29 4.74 0.00 4.58
6825 7784 4.580580 ACTTTGCCTTATGTTATGCTAGCC 59.419 41.667 13.29 0.00 0.00 3.93
6826 7785 5.506317 CCACTTTGCCTTATGTTATGCTAGC 60.506 44.000 8.10 8.10 0.00 3.42
6827 7786 5.506317 GCCACTTTGCCTTATGTTATGCTAG 60.506 44.000 0.00 0.00 0.00 3.42
6828 7787 4.338118 GCCACTTTGCCTTATGTTATGCTA 59.662 41.667 0.00 0.00 0.00 3.49
6829 7788 3.131046 GCCACTTTGCCTTATGTTATGCT 59.869 43.478 0.00 0.00 0.00 3.79
6830 7789 3.447742 GCCACTTTGCCTTATGTTATGC 58.552 45.455 0.00 0.00 0.00 3.14
6842 7801 1.367471 GAACCCTTGGCCACTTTGC 59.633 57.895 3.88 0.00 0.00 3.68
6843 7802 0.758685 TGGAACCCTTGGCCACTTTG 60.759 55.000 3.88 0.00 0.00 2.77
6844 7803 0.190815 ATGGAACCCTTGGCCACTTT 59.809 50.000 3.88 0.00 33.93 2.66
6845 7804 1.080638 TATGGAACCCTTGGCCACTT 58.919 50.000 3.88 0.00 33.93 3.16
6846 7805 1.063717 CATATGGAACCCTTGGCCACT 60.064 52.381 3.88 0.00 33.93 4.00
6847 7806 1.402787 CATATGGAACCCTTGGCCAC 58.597 55.000 3.88 0.00 33.93 5.01
6848 7807 0.261402 CCATATGGAACCCTTGGCCA 59.739 55.000 17.49 0.00 37.39 5.36
6849 7808 0.469892 CCCATATGGAACCCTTGGCC 60.470 60.000 24.00 0.00 37.39 5.36
6850 7809 0.469892 CCCCATATGGAACCCTTGGC 60.470 60.000 24.00 0.00 37.39 4.52
6851 7810 1.231018 TCCCCATATGGAACCCTTGG 58.769 55.000 24.00 13.44 37.39 3.61
6852 7811 3.618120 ATTCCCCATATGGAACCCTTG 57.382 47.619 24.00 4.12 46.76 3.61
6853 7812 5.966968 ATAATTCCCCATATGGAACCCTT 57.033 39.130 24.00 11.55 46.76 3.95
6854 7813 6.583110 GCATATAATTCCCCATATGGAACCCT 60.583 42.308 24.00 7.05 46.76 4.34
6855 7814 5.598417 GCATATAATTCCCCATATGGAACCC 59.402 44.000 24.00 0.00 46.76 4.11
6856 7815 5.299279 CGCATATAATTCCCCATATGGAACC 59.701 44.000 24.00 0.00 46.76 3.62
6857 7816 5.299279 CCGCATATAATTCCCCATATGGAAC 59.701 44.000 24.00 0.00 46.76 3.62
6859 7818 4.688597 GCCGCATATAATTCCCCATATGGA 60.689 45.833 24.00 3.42 36.20 3.41
6860 7819 3.569701 GCCGCATATAATTCCCCATATGG 59.430 47.826 15.41 15.41 36.20 2.74
6861 7820 4.276678 CAGCCGCATATAATTCCCCATATG 59.723 45.833 0.00 0.00 37.91 1.78
6862 7821 4.464008 CAGCCGCATATAATTCCCCATAT 58.536 43.478 0.00 0.00 0.00 1.78
6863 7822 3.884895 CAGCCGCATATAATTCCCCATA 58.115 45.455 0.00 0.00 0.00 2.74
6864 7823 2.726821 CAGCCGCATATAATTCCCCAT 58.273 47.619 0.00 0.00 0.00 4.00
6865 7824 1.886222 GCAGCCGCATATAATTCCCCA 60.886 52.381 0.00 0.00 38.36 4.96
6866 7825 0.811281 GCAGCCGCATATAATTCCCC 59.189 55.000 0.00 0.00 38.36 4.81
6867 7826 1.533625 TGCAGCCGCATATAATTCCC 58.466 50.000 0.00 0.00 45.36 3.97
6878 7837 4.171416 GCTAGCACTTGCAGCCGC 62.171 66.667 10.63 0.00 45.16 6.53
6879 7838 2.743538 TGCTAGCACTTGCAGCCG 60.744 61.111 14.93 0.79 45.16 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.