Multiple sequence alignment - TraesCS2D01G490300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G490300 chr2D 100.000 3387 0 0 1 3387 589237325 589240711 0.000000e+00 6255.0
1 TraesCS2D01G490300 chr2D 81.553 103 15 3 921 1019 578041342 578041444 7.790000e-12 82.4
2 TraesCS2D01G490300 chr2D 79.412 102 18 2 922 1020 577581406 577581305 6.060000e-08 69.4
3 TraesCS2D01G490300 chr2B 93.933 2489 122 18 151 2620 712824971 712827449 0.000000e+00 3733.0
4 TraesCS2D01G490300 chr2B 95.548 292 9 2 2951 3242 712832100 712832387 6.620000e-127 464.0
5 TraesCS2D01G490300 chr2B 94.771 153 8 0 2713 2865 712831951 712832103 4.370000e-59 239.0
6 TraesCS2D01G490300 chr2B 89.916 119 11 1 31 149 403101589 403101706 5.850000e-33 152.0
7 TraesCS2D01G490300 chr2B 90.588 85 0 1 3279 3363 712832470 712832546 4.620000e-19 106.0
8 TraesCS2D01G490300 chr2B 77.698 139 20 9 889 1020 695508635 695508769 1.300000e-09 75.0
9 TraesCS2D01G490300 chr5D 76.966 1437 264 50 400 1814 545523606 545524997 0.000000e+00 758.0
10 TraesCS2D01G490300 chr1A 77.990 1254 225 34 386 1626 569949680 569948465 0.000000e+00 739.0
11 TraesCS2D01G490300 chr1A 81.765 170 26 3 2268 2433 570008939 570008771 1.640000e-28 137.0
12 TraesCS2D01G490300 chr4A 77.911 1254 226 34 386 1626 623952188 623950973 0.000000e+00 734.0
13 TraesCS2D01G490300 chr4A 81.765 170 26 3 2268 2433 623970533 623970365 1.640000e-28 137.0
14 TraesCS2D01G490300 chr7D 88.177 203 22 2 2513 2714 321355855 321356056 1.210000e-59 241.0
15 TraesCS2D01G490300 chr7D 94.949 99 5 0 52 150 126648471 126648569 4.530000e-34 156.0
16 TraesCS2D01G490300 chr3B 95.000 100 5 0 52 151 742154703 742154604 1.260000e-34 158.0
17 TraesCS2D01G490300 chr4B 94.059 101 6 0 53 153 315720446 315720346 1.630000e-33 154.0
18 TraesCS2D01G490300 chr2A 92.453 106 8 0 48 153 92494421 92494526 5.850000e-33 152.0
19 TraesCS2D01G490300 chr2A 79.528 127 26 0 2268 2394 707305172 707305046 1.290000e-14 91.6
20 TraesCS2D01G490300 chr2A 81.633 98 11 6 928 1020 715917451 715917356 1.300000e-09 75.0
21 TraesCS2D01G490300 chr2A 79.167 96 17 2 928 1020 715950698 715950603 2.820000e-06 63.9
22 TraesCS2D01G490300 chr6A 91.071 112 9 1 43 154 380939701 380939811 2.110000e-32 150.0
23 TraesCS2D01G490300 chr6A 88.618 123 12 2 31 152 228534616 228534737 7.570000e-32 148.0
24 TraesCS2D01G490300 chr1B 91.743 109 7 2 43 149 328139674 328139782 2.110000e-32 150.0
25 TraesCS2D01G490300 chr7B 91.667 108 7 2 42 149 181033581 181033686 7.570000e-32 148.0
26 TraesCS2D01G490300 chr3A 77.344 128 27 2 2268 2394 311861170 311861296 1.300000e-09 75.0
27 TraesCS2D01G490300 chr5A 91.304 46 4 0 2349 2394 134721341 134721296 2.820000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G490300 chr2D 589237325 589240711 3386 False 6255.000000 6255 100.000000 1 3387 1 chr2D.!!$F2 3386
1 TraesCS2D01G490300 chr2B 712824971 712827449 2478 False 3733.000000 3733 93.933000 151 2620 1 chr2B.!!$F3 2469
2 TraesCS2D01G490300 chr2B 712831951 712832546 595 False 269.666667 464 93.635667 2713 3363 3 chr2B.!!$F4 650
3 TraesCS2D01G490300 chr5D 545523606 545524997 1391 False 758.000000 758 76.966000 400 1814 1 chr5D.!!$F1 1414
4 TraesCS2D01G490300 chr1A 569948465 569949680 1215 True 739.000000 739 77.990000 386 1626 1 chr1A.!!$R1 1240
5 TraesCS2D01G490300 chr4A 623950973 623952188 1215 True 734.000000 734 77.911000 386 1626 1 chr4A.!!$R1 1240

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
349 351 0.033642 GCCGCCTACCTTCTATCCAC 59.966 60.0 0.00 0.0 0.00 4.02 F
1021 1026 0.035439 GGAGTGGCGAATTCTCCCAA 60.035 55.0 11.91 0.0 41.09 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2180 2196 0.179702 TCACTGCCATCCATCAGAGC 59.82 55.0 0.0 0.0 34.57 4.09 R
2694 2721 0.110486 GCCTCAAGACTTTGGACCCA 59.89 55.0 7.9 0.0 34.97 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.702494 ACAATATATATGTGACAGAGTGACATG 57.298 33.333 11.58 0.00 40.27 3.21
27 28 9.702494 CAATATATATGTGACAGAGTGACATGT 57.298 33.333 11.58 0.00 40.27 3.21
29 30 9.702494 ATATATATGTGACAGAGTGACATGTTG 57.298 33.333 11.58 0.00 40.27 3.33
30 31 3.817709 TGTGACAGAGTGACATGTTGA 57.182 42.857 0.00 0.00 0.00 3.18
31 32 4.135747 TGTGACAGAGTGACATGTTGAA 57.864 40.909 0.00 0.00 0.00 2.69
32 33 4.707105 TGTGACAGAGTGACATGTTGAAT 58.293 39.130 0.00 0.00 0.00 2.57
33 34 4.751600 TGTGACAGAGTGACATGTTGAATC 59.248 41.667 0.00 0.00 0.00 2.52
34 35 4.751600 GTGACAGAGTGACATGTTGAATCA 59.248 41.667 0.00 0.00 0.00 2.57
35 36 4.751600 TGACAGAGTGACATGTTGAATCAC 59.248 41.667 0.00 2.90 42.54 3.06
36 37 4.707105 ACAGAGTGACATGTTGAATCACA 58.293 39.130 14.81 0.00 44.26 3.58
37 38 5.311265 ACAGAGTGACATGTTGAATCACAT 58.689 37.500 14.81 3.02 44.26 3.21
38 39 5.766670 ACAGAGTGACATGTTGAATCACATT 59.233 36.000 14.81 0.00 44.26 2.71
39 40 6.263842 ACAGAGTGACATGTTGAATCACATTT 59.736 34.615 14.81 0.00 44.26 2.32
40 41 7.143340 CAGAGTGACATGTTGAATCACATTTT 58.857 34.615 14.81 0.00 44.26 1.82
41 42 8.291740 CAGAGTGACATGTTGAATCACATTTTA 58.708 33.333 14.81 0.00 44.26 1.52
42 43 9.017509 AGAGTGACATGTTGAATCACATTTTAT 57.982 29.630 14.81 0.00 44.26 1.40
43 44 9.630098 GAGTGACATGTTGAATCACATTTTATT 57.370 29.630 14.81 0.00 44.26 1.40
44 45 9.985730 AGTGACATGTTGAATCACATTTTATTT 57.014 25.926 14.81 0.00 44.26 1.40
64 65 9.909644 TTTATTTAATATGCTACTCTCTCCGTC 57.090 33.333 0.00 0.00 0.00 4.79
65 66 5.961396 TTAATATGCTACTCTCTCCGTCC 57.039 43.478 0.00 0.00 0.00 4.79
66 67 2.273538 TATGCTACTCTCTCCGTCCC 57.726 55.000 0.00 0.00 0.00 4.46
67 68 0.259065 ATGCTACTCTCTCCGTCCCA 59.741 55.000 0.00 0.00 0.00 4.37
68 69 0.039180 TGCTACTCTCTCCGTCCCAA 59.961 55.000 0.00 0.00 0.00 4.12
69 70 1.183549 GCTACTCTCTCCGTCCCAAA 58.816 55.000 0.00 0.00 0.00 3.28
70 71 1.549170 GCTACTCTCTCCGTCCCAAAA 59.451 52.381 0.00 0.00 0.00 2.44
71 72 2.168728 GCTACTCTCTCCGTCCCAAAAT 59.831 50.000 0.00 0.00 0.00 1.82
72 73 3.383825 GCTACTCTCTCCGTCCCAAAATA 59.616 47.826 0.00 0.00 0.00 1.40
73 74 4.142004 GCTACTCTCTCCGTCCCAAAATAA 60.142 45.833 0.00 0.00 0.00 1.40
74 75 4.473477 ACTCTCTCCGTCCCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
75 76 3.838903 ACTCTCTCCGTCCCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
76 77 4.184629 CTCTCTCCGTCCCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
77 78 3.581332 TCTCTCCGTCCCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
78 79 3.933332 CTCTCCGTCCCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
79 80 3.581332 TCTCCGTCCCAAAATAAGTGTCT 59.419 43.478 0.00 0.00 0.00 3.41
80 81 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
81 82 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
82 83 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
83 84 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
84 85 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
85 86 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
86 87 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
87 88 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
88 89 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
89 90 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
90 91 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
91 92 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
96 97 9.694137 ATAAGTGTCTCAACTTTGTACTAACTC 57.306 33.333 0.00 0.00 40.77 3.01
97 98 6.514063 AGTGTCTCAACTTTGTACTAACTCC 58.486 40.000 0.00 0.00 0.00 3.85
98 99 6.097839 AGTGTCTCAACTTTGTACTAACTCCA 59.902 38.462 0.00 0.00 0.00 3.86
99 100 6.421202 GTGTCTCAACTTTGTACTAACTCCAG 59.579 42.308 0.00 0.00 0.00 3.86
100 101 6.097839 TGTCTCAACTTTGTACTAACTCCAGT 59.902 38.462 0.00 0.00 0.00 4.00
101 102 7.286087 TGTCTCAACTTTGTACTAACTCCAGTA 59.714 37.037 0.00 0.00 0.00 2.74
117 118 8.549338 AACTCCAGTACAAATTTCTACTAAGC 57.451 34.615 5.89 0.00 0.00 3.09
118 119 7.908453 ACTCCAGTACAAATTTCTACTAAGCT 58.092 34.615 5.89 0.00 0.00 3.74
119 120 8.035984 ACTCCAGTACAAATTTCTACTAAGCTC 58.964 37.037 5.89 0.00 0.00 4.09
120 121 7.903145 TCCAGTACAAATTTCTACTAAGCTCA 58.097 34.615 5.89 0.00 0.00 4.26
121 122 8.372459 TCCAGTACAAATTTCTACTAAGCTCAA 58.628 33.333 5.89 0.00 0.00 3.02
122 123 8.999431 CCAGTACAAATTTCTACTAAGCTCAAA 58.001 33.333 5.89 0.00 0.00 2.69
127 128 8.903820 ACAAATTTCTACTAAGCTCAAAACACT 58.096 29.630 0.00 0.00 0.00 3.55
128 129 9.736023 CAAATTTCTACTAAGCTCAAAACACTT 57.264 29.630 0.00 0.00 0.00 3.16
135 136 9.612620 CTACTAAGCTCAAAACACTTATTTTGG 57.387 33.333 10.23 4.03 45.59 3.28
140 141 5.189659 TCAAAACACTTATTTTGGGACGG 57.810 39.130 10.23 0.00 45.59 4.79
141 142 4.888239 TCAAAACACTTATTTTGGGACGGA 59.112 37.500 10.23 0.00 45.59 4.69
142 143 5.009210 TCAAAACACTTATTTTGGGACGGAG 59.991 40.000 10.23 0.00 45.59 4.63
143 144 3.067684 ACACTTATTTTGGGACGGAGG 57.932 47.619 0.00 0.00 0.00 4.30
144 145 2.374170 ACACTTATTTTGGGACGGAGGT 59.626 45.455 0.00 0.00 0.00 3.85
145 146 3.583966 ACACTTATTTTGGGACGGAGGTA 59.416 43.478 0.00 0.00 0.00 3.08
146 147 4.189231 CACTTATTTTGGGACGGAGGTAG 58.811 47.826 0.00 0.00 0.00 3.18
147 148 3.842436 ACTTATTTTGGGACGGAGGTAGT 59.158 43.478 0.00 0.00 0.00 2.73
148 149 5.025453 ACTTATTTTGGGACGGAGGTAGTA 58.975 41.667 0.00 0.00 0.00 1.82
149 150 5.128335 ACTTATTTTGGGACGGAGGTAGTAG 59.872 44.000 0.00 0.00 0.00 2.57
159 160 5.392487 GGACGGAGGTAGTAGTTTGAGTTAC 60.392 48.000 0.00 0.00 0.00 2.50
173 175 8.336801 AGTTTGAGTTACATTGATCTAAACCC 57.663 34.615 0.00 0.00 0.00 4.11
231 233 6.816140 AGGTGTTTACATTTGAGGTGTTTTTG 59.184 34.615 0.00 0.00 0.00 2.44
245 247 2.625790 TGTTTTTGGTCATTTCGAGGGG 59.374 45.455 0.00 0.00 0.00 4.79
249 251 0.618458 TGGTCATTTCGAGGGGAAGG 59.382 55.000 0.00 0.00 35.70 3.46
252 254 2.633488 GTCATTTCGAGGGGAAGGAAG 58.367 52.381 0.00 0.00 35.70 3.46
253 255 2.027100 GTCATTTCGAGGGGAAGGAAGT 60.027 50.000 0.00 0.00 35.70 3.01
255 257 3.073946 TCATTTCGAGGGGAAGGAAGTTT 59.926 43.478 0.00 0.00 35.70 2.66
257 259 0.606604 TCGAGGGGAAGGAAGTTTCG 59.393 55.000 0.00 0.00 0.00 3.46
258 260 0.320697 CGAGGGGAAGGAAGTTTCGT 59.679 55.000 0.00 0.00 0.00 3.85
259 261 1.547372 CGAGGGGAAGGAAGTTTCGTA 59.453 52.381 0.00 0.00 0.00 3.43
260 262 2.673326 CGAGGGGAAGGAAGTTTCGTAC 60.673 54.545 0.00 0.00 0.00 3.67
261 263 2.301009 GAGGGGAAGGAAGTTTCGTACA 59.699 50.000 0.00 0.00 0.00 2.90
262 264 2.302157 AGGGGAAGGAAGTTTCGTACAG 59.698 50.000 0.00 0.00 0.00 2.74
264 266 2.289506 GGGAAGGAAGTTTCGTACAGCT 60.290 50.000 0.00 0.00 0.00 4.24
265 267 3.400255 GGAAGGAAGTTTCGTACAGCTT 58.600 45.455 0.00 0.00 0.00 3.74
267 269 4.275196 GGAAGGAAGTTTCGTACAGCTTTT 59.725 41.667 0.00 0.00 0.00 2.27
268 270 4.813296 AGGAAGTTTCGTACAGCTTTTG 57.187 40.909 0.00 0.00 0.00 2.44
269 271 4.196971 AGGAAGTTTCGTACAGCTTTTGT 58.803 39.130 0.00 0.00 43.96 2.83
270 272 4.638865 AGGAAGTTTCGTACAGCTTTTGTT 59.361 37.500 0.00 0.00 41.29 2.83
271 273 4.733405 GGAAGTTTCGTACAGCTTTTGTTG 59.267 41.667 0.00 0.00 41.29 3.33
309 311 5.880901 GGAAATTTCCTAGCTATGGATCCA 58.119 41.667 26.94 18.88 44.11 3.41
342 344 2.202756 CGTCAGCCGCCTACCTTC 60.203 66.667 0.00 0.00 0.00 3.46
343 345 2.711922 CGTCAGCCGCCTACCTTCT 61.712 63.158 0.00 0.00 0.00 2.85
344 346 1.381928 CGTCAGCCGCCTACCTTCTA 61.382 60.000 0.00 0.00 0.00 2.10
345 347 1.041437 GTCAGCCGCCTACCTTCTAT 58.959 55.000 0.00 0.00 0.00 1.98
346 348 1.000052 GTCAGCCGCCTACCTTCTATC 60.000 57.143 0.00 0.00 0.00 2.08
349 351 0.033642 GCCGCCTACCTTCTATCCAC 59.966 60.000 0.00 0.00 0.00 4.02
396 398 4.124943 CAGCAGCCATGGCCTCCT 62.125 66.667 33.14 22.45 43.17 3.69
452 457 4.117661 GCTCTCGGCGTCGACCTT 62.118 66.667 8.66 0.00 40.88 3.50
468 473 1.028905 CCTTCTCCGCGAGATCTTCT 58.971 55.000 8.23 0.00 38.56 2.85
476 481 0.873743 GCGAGATCTTCTTCCGCCTG 60.874 60.000 13.21 0.00 39.97 4.85
480 485 1.977293 GATCTTCTTCCGCCTGCCCT 61.977 60.000 0.00 0.00 0.00 5.19
485 490 4.408396 TTCCGCCTGCCCTCCCTA 62.408 66.667 0.00 0.00 0.00 3.53
500 505 2.823147 CTACCGAGCCTCGTCCGT 60.823 66.667 13.83 6.55 38.40 4.69
743 748 0.107654 CCGGTTGGGAGATCAGTTCC 60.108 60.000 0.00 0.00 38.47 3.62
774 779 2.048503 GGCGACGGCTACTTGTGT 60.049 61.111 15.00 0.00 39.81 3.72
850 855 4.292178 CGCGGGCTCTGGATCTCC 62.292 72.222 0.00 0.00 0.00 3.71
864 869 1.205893 GATCTCCACATCTATCGGCCC 59.794 57.143 0.00 0.00 0.00 5.80
871 876 0.902531 CATCTATCGGCCCGGGTTAT 59.097 55.000 24.63 15.44 0.00 1.89
904 909 3.917329 TCGACCTTGAGTTCTACACTG 57.083 47.619 0.00 0.00 35.01 3.66
906 911 4.392047 TCGACCTTGAGTTCTACACTGTA 58.608 43.478 0.00 0.00 35.01 2.74
962 967 3.829044 TATCCGTCACCACCGCCG 61.829 66.667 0.00 0.00 0.00 6.46
1021 1026 0.035439 GGAGTGGCGAATTCTCCCAA 60.035 55.000 11.91 0.00 41.09 4.12
1054 1059 1.519719 GGGCTGCGTGAATCTCTCT 59.480 57.895 0.00 0.00 0.00 3.10
1200 1205 1.290203 CGGAGTGGGATGAATCAACG 58.710 55.000 0.00 0.00 0.00 4.10
1212 1217 5.758296 GGATGAATCAACGTATAAGCTTGGA 59.242 40.000 9.86 0.00 0.00 3.53
1233 1238 2.500910 AGAGACCAAGGATGAGAAGCTG 59.499 50.000 0.00 0.00 0.00 4.24
1254 1259 5.346281 GCTGTGCATCGTAGATATAAAGGAC 59.654 44.000 0.00 0.00 45.12 3.85
1287 1292 0.107017 CTTGGTTCCTGGCATCCGAT 60.107 55.000 0.00 0.00 0.00 4.18
1300 1305 2.945080 ATCCGATGATGACATTGCCT 57.055 45.000 0.00 0.00 36.78 4.75
1314 1319 3.915575 GCCTTCAGCAGGTGGATG 58.084 61.111 0.00 0.00 46.07 3.51
1367 1372 1.137697 AAGGAGTTCACCGGGTTCTT 58.862 50.000 6.32 0.00 34.73 2.52
1885 1901 7.696755 TGCTGTACTGCATATGTTTAAGATTG 58.303 34.615 21.93 0.00 38.12 2.67
1916 1932 4.001652 GTCCACTAAAAAGCCCTCTACAC 58.998 47.826 0.00 0.00 0.00 2.90
1924 1940 7.942894 ACTAAAAAGCCCTCTACACATACTTTT 59.057 33.333 0.00 0.00 37.44 2.27
1925 1941 6.819397 AAAAGCCCTCTACACATACTTTTC 57.181 37.500 0.00 0.00 32.08 2.29
1926 1942 5.763876 AAGCCCTCTACACATACTTTTCT 57.236 39.130 0.00 0.00 0.00 2.52
1928 1944 4.080863 AGCCCTCTACACATACTTTTCTGG 60.081 45.833 0.00 0.00 0.00 3.86
1929 1945 4.323562 GCCCTCTACACATACTTTTCTGGT 60.324 45.833 0.00 0.00 0.00 4.00
2010 2026 7.965107 GCTGTAATCTTGGAAAATACAGTCTTG 59.035 37.037 11.53 0.00 43.28 3.02
2138 2154 1.672356 CCCGTGGGCACAGAAGAAG 60.672 63.158 0.00 0.00 0.00 2.85
2167 2183 0.815213 TCCTTGTCACTGCACTGCAC 60.815 55.000 0.00 0.00 33.79 4.57
2180 2196 0.250209 ACTGCACTCACTCAGCCAAG 60.250 55.000 0.00 0.00 33.80 3.61
2216 2232 6.017440 TGGCAGTGACAGTAACAAAGAATTAC 60.017 38.462 0.00 0.00 33.50 1.89
2228 2244 7.506328 AACAAAGAATTACTGGTGGAGTTAC 57.494 36.000 0.00 0.00 35.96 2.50
2264 2280 4.242475 TGACAGTACTAATGAAACAGCGG 58.758 43.478 0.00 0.00 0.00 5.52
2347 2363 9.941325 AAAATCATTACTTTGGATGCACAATTA 57.059 25.926 0.00 0.00 0.00 1.40
2396 2412 5.126869 AGGATAAGTGTGTGACTCTGAGATG 59.873 44.000 12.44 0.00 31.73 2.90
2445 2461 7.450124 ACCTGATGATGAATTGATGATAAGC 57.550 36.000 0.00 0.00 0.00 3.09
2475 2491 1.130749 GCAGATGTCAAGAGCTTGCTG 59.869 52.381 0.00 7.95 40.24 4.41
2489 2505 1.042003 TTGCTGCCACTTCTTTGCCA 61.042 50.000 0.00 0.00 0.00 4.92
2517 2544 8.255394 TGAAGTATTGTAAGTGATCATGTGTG 57.745 34.615 0.00 0.00 0.00 3.82
2522 2549 9.098355 GTATTGTAAGTGATCATGTGTGTATGT 57.902 33.333 0.00 0.00 0.00 2.29
2571 2598 1.615392 GAAATGCCTTGGTGCTTCAGT 59.385 47.619 0.00 0.00 0.00 3.41
2604 2631 4.937201 TGTGAAGAGAGTGTATGTGTGT 57.063 40.909 0.00 0.00 0.00 3.72
2647 2674 9.056005 TCATATACTAGGTTTGATGATGTTTGC 57.944 33.333 0.00 0.00 0.00 3.68
2648 2675 8.839343 CATATACTAGGTTTGATGATGTTTGCA 58.161 33.333 0.00 0.00 0.00 4.08
2649 2676 7.701539 ATACTAGGTTTGATGATGTTTGCAA 57.298 32.000 0.00 0.00 0.00 4.08
2650 2677 5.772521 ACTAGGTTTGATGATGTTTGCAAC 58.227 37.500 0.00 0.00 0.00 4.17
2651 2678 3.993920 AGGTTTGATGATGTTTGCAACC 58.006 40.909 0.00 0.00 0.00 3.77
2652 2679 3.387374 AGGTTTGATGATGTTTGCAACCA 59.613 39.130 0.00 0.00 0.00 3.67
2653 2680 3.494251 GGTTTGATGATGTTTGCAACCAC 59.506 43.478 0.00 0.00 0.00 4.16
2654 2681 4.370917 GTTTGATGATGTTTGCAACCACT 58.629 39.130 0.00 0.00 0.00 4.00
2655 2682 3.921119 TGATGATGTTTGCAACCACTC 57.079 42.857 0.00 0.00 0.00 3.51
2656 2683 3.489355 TGATGATGTTTGCAACCACTCT 58.511 40.909 0.00 0.00 0.00 3.24
2657 2684 3.503363 TGATGATGTTTGCAACCACTCTC 59.497 43.478 0.00 0.00 0.00 3.20
2658 2685 2.229792 TGATGTTTGCAACCACTCTCC 58.770 47.619 0.00 0.00 0.00 3.71
2659 2686 2.229792 GATGTTTGCAACCACTCTCCA 58.770 47.619 0.00 0.00 0.00 3.86
2660 2687 2.363306 TGTTTGCAACCACTCTCCAT 57.637 45.000 0.00 0.00 0.00 3.41
2661 2688 2.229792 TGTTTGCAACCACTCTCCATC 58.770 47.619 0.00 0.00 0.00 3.51
2662 2689 2.229792 GTTTGCAACCACTCTCCATCA 58.770 47.619 0.00 0.00 0.00 3.07
2663 2690 2.622942 GTTTGCAACCACTCTCCATCAA 59.377 45.455 0.00 0.00 0.00 2.57
2664 2691 2.885135 TGCAACCACTCTCCATCAAT 57.115 45.000 0.00 0.00 0.00 2.57
2665 2692 3.998913 TGCAACCACTCTCCATCAATA 57.001 42.857 0.00 0.00 0.00 1.90
2666 2693 4.508551 TGCAACCACTCTCCATCAATAT 57.491 40.909 0.00 0.00 0.00 1.28
2667 2694 4.201657 TGCAACCACTCTCCATCAATATG 58.798 43.478 0.00 0.00 0.00 1.78
2668 2695 4.080413 TGCAACCACTCTCCATCAATATGA 60.080 41.667 0.00 0.00 34.84 2.15
2669 2696 4.274459 GCAACCACTCTCCATCAATATGAC 59.726 45.833 0.00 0.00 34.84 3.06
2670 2697 5.678583 CAACCACTCTCCATCAATATGACT 58.321 41.667 0.00 0.00 34.84 3.41
2671 2698 6.686378 GCAACCACTCTCCATCAATATGACTA 60.686 42.308 0.00 0.00 34.84 2.59
2672 2699 6.662865 ACCACTCTCCATCAATATGACTAG 57.337 41.667 0.00 0.00 34.84 2.57
2673 2700 6.139671 ACCACTCTCCATCAATATGACTAGT 58.860 40.000 0.00 0.00 34.84 2.57
2674 2701 6.613271 ACCACTCTCCATCAATATGACTAGTT 59.387 38.462 0.00 0.00 34.84 2.24
2675 2702 7.126421 ACCACTCTCCATCAATATGACTAGTTT 59.874 37.037 0.00 0.00 34.84 2.66
2676 2703 7.655328 CCACTCTCCATCAATATGACTAGTTTC 59.345 40.741 0.00 0.00 34.84 2.78
2677 2704 8.420222 CACTCTCCATCAATATGACTAGTTTCT 58.580 37.037 0.00 0.00 34.84 2.52
2678 2705 8.637986 ACTCTCCATCAATATGACTAGTTTCTC 58.362 37.037 0.00 0.00 34.84 2.87
2679 2706 7.652727 TCTCCATCAATATGACTAGTTTCTCG 58.347 38.462 0.00 0.00 34.84 4.04
2680 2707 7.285629 TCTCCATCAATATGACTAGTTTCTCGT 59.714 37.037 0.00 0.00 34.84 4.18
2681 2708 8.459911 TCCATCAATATGACTAGTTTCTCGTA 57.540 34.615 0.00 0.00 34.84 3.43
2682 2709 8.350722 TCCATCAATATGACTAGTTTCTCGTAC 58.649 37.037 0.00 0.00 34.84 3.67
2683 2710 8.353684 CCATCAATATGACTAGTTTCTCGTACT 58.646 37.037 0.00 0.00 34.84 2.73
2684 2711 9.388346 CATCAATATGACTAGTTTCTCGTACTC 57.612 37.037 0.00 0.00 34.84 2.59
2685 2712 8.734218 TCAATATGACTAGTTTCTCGTACTCT 57.266 34.615 0.00 0.00 0.00 3.24
2686 2713 8.613482 TCAATATGACTAGTTTCTCGTACTCTG 58.387 37.037 0.00 0.00 0.00 3.35
2687 2714 4.681835 TGACTAGTTTCTCGTACTCTGC 57.318 45.455 0.00 0.00 0.00 4.26
2688 2715 4.325119 TGACTAGTTTCTCGTACTCTGCT 58.675 43.478 0.00 0.00 0.00 4.24
2689 2716 4.760715 TGACTAGTTTCTCGTACTCTGCTT 59.239 41.667 0.00 0.00 0.00 3.91
2690 2717 5.106634 TGACTAGTTTCTCGTACTCTGCTTC 60.107 44.000 0.00 0.00 0.00 3.86
2691 2718 5.005094 ACTAGTTTCTCGTACTCTGCTTCT 58.995 41.667 0.00 0.00 0.00 2.85
2692 2719 4.857509 AGTTTCTCGTACTCTGCTTCTT 57.142 40.909 0.00 0.00 0.00 2.52
2693 2720 5.203060 AGTTTCTCGTACTCTGCTTCTTT 57.797 39.130 0.00 0.00 0.00 2.52
2694 2721 5.602628 AGTTTCTCGTACTCTGCTTCTTTT 58.397 37.500 0.00 0.00 0.00 2.27
2695 2722 5.463724 AGTTTCTCGTACTCTGCTTCTTTTG 59.536 40.000 0.00 0.00 0.00 2.44
2696 2723 3.914312 TCTCGTACTCTGCTTCTTTTGG 58.086 45.455 0.00 0.00 0.00 3.28
2697 2724 2.996621 CTCGTACTCTGCTTCTTTTGGG 59.003 50.000 0.00 0.00 0.00 4.12
2698 2725 2.367567 TCGTACTCTGCTTCTTTTGGGT 59.632 45.455 0.00 0.00 0.00 4.51
2699 2726 2.737252 CGTACTCTGCTTCTTTTGGGTC 59.263 50.000 0.00 0.00 0.00 4.46
2700 2727 2.278332 ACTCTGCTTCTTTTGGGTCC 57.722 50.000 0.00 0.00 0.00 4.46
2701 2728 1.494721 ACTCTGCTTCTTTTGGGTCCA 59.505 47.619 0.00 0.00 0.00 4.02
2702 2729 2.091885 ACTCTGCTTCTTTTGGGTCCAA 60.092 45.455 0.00 0.00 0.00 3.53
2703 2730 2.958355 CTCTGCTTCTTTTGGGTCCAAA 59.042 45.455 10.80 10.80 43.23 3.28
2704 2731 2.958355 TCTGCTTCTTTTGGGTCCAAAG 59.042 45.455 13.95 9.45 45.15 2.77
2705 2732 2.695147 CTGCTTCTTTTGGGTCCAAAGT 59.305 45.455 13.95 0.00 45.15 2.66
2706 2733 2.693074 TGCTTCTTTTGGGTCCAAAGTC 59.307 45.455 13.95 5.38 45.15 3.01
2707 2734 2.959030 GCTTCTTTTGGGTCCAAAGTCT 59.041 45.455 13.95 0.00 45.15 3.24
2708 2735 3.384789 GCTTCTTTTGGGTCCAAAGTCTT 59.615 43.478 13.95 0.00 45.15 3.01
2709 2736 4.737649 GCTTCTTTTGGGTCCAAAGTCTTG 60.738 45.833 13.95 7.42 45.15 3.02
2710 2737 4.243793 TCTTTTGGGTCCAAAGTCTTGA 57.756 40.909 13.95 7.38 45.15 3.02
2711 2738 4.207165 TCTTTTGGGTCCAAAGTCTTGAG 58.793 43.478 13.95 8.68 45.15 3.02
2761 2788 4.986659 GTGCTTGTTCTTGAAAGATTGCAT 59.013 37.500 0.00 0.00 34.49 3.96
2773 2800 1.660607 AGATTGCATGTAGTGTTCGCG 59.339 47.619 0.00 0.00 0.00 5.87
2818 2845 5.999205 AGAATATACTGGAGGCAGAGATG 57.001 43.478 0.00 0.00 0.00 2.90
2836 2863 1.685765 GGGAAAATGGGGAGTGGCC 60.686 63.158 0.00 0.00 0.00 5.36
2846 2873 1.549950 GGGGAGTGGCCAATTCAGAAA 60.550 52.381 14.66 0.00 38.95 2.52
2857 2884 6.183360 TGGCCAATTCAGAAAATATCTTCGTC 60.183 38.462 0.61 0.00 35.73 4.20
2861 2888 9.534565 CCAATTCAGAAAATATCTTCGTCTAGA 57.465 33.333 0.00 0.00 35.73 2.43
2886 2913 9.562583 GAGATATTCTCTAGTTAATTACAGCCG 57.437 37.037 0.00 0.00 40.30 5.52
2887 2914 8.524487 AGATATTCTCTAGTTAATTACAGCCGG 58.476 37.037 0.00 0.00 30.26 6.13
2888 2915 6.726490 ATTCTCTAGTTAATTACAGCCGGA 57.274 37.500 5.05 0.00 0.00 5.14
2889 2916 5.769484 TCTCTAGTTAATTACAGCCGGAG 57.231 43.478 5.05 0.00 0.00 4.63
2890 2917 4.037684 TCTCTAGTTAATTACAGCCGGAGC 59.962 45.833 5.05 0.00 40.32 4.70
2891 2918 3.702548 TCTAGTTAATTACAGCCGGAGCA 59.297 43.478 5.05 0.00 43.56 4.26
2892 2919 2.906354 AGTTAATTACAGCCGGAGCAG 58.094 47.619 5.05 0.00 43.56 4.24
2893 2920 2.500098 AGTTAATTACAGCCGGAGCAGA 59.500 45.455 5.05 0.00 43.56 4.26
2894 2921 3.134804 AGTTAATTACAGCCGGAGCAGAT 59.865 43.478 5.05 0.00 43.56 2.90
2895 2922 2.717639 AATTACAGCCGGAGCAGATT 57.282 45.000 5.05 0.00 43.56 2.40
2896 2923 3.838244 AATTACAGCCGGAGCAGATTA 57.162 42.857 5.05 0.00 43.56 1.75
2897 2924 2.890808 TTACAGCCGGAGCAGATTAG 57.109 50.000 5.05 0.00 43.56 1.73
2898 2925 2.067365 TACAGCCGGAGCAGATTAGA 57.933 50.000 5.05 0.00 43.56 2.10
2899 2926 1.418334 ACAGCCGGAGCAGATTAGAT 58.582 50.000 5.05 0.00 43.56 1.98
2900 2927 1.765314 ACAGCCGGAGCAGATTAGATT 59.235 47.619 5.05 0.00 43.56 2.40
2901 2928 2.141517 CAGCCGGAGCAGATTAGATTG 58.858 52.381 5.05 0.00 43.56 2.67
2902 2929 2.042464 AGCCGGAGCAGATTAGATTGA 58.958 47.619 5.05 0.00 43.56 2.57
2903 2930 2.139118 GCCGGAGCAGATTAGATTGAC 58.861 52.381 5.05 0.00 39.53 3.18
2904 2931 2.398498 CCGGAGCAGATTAGATTGACG 58.602 52.381 0.00 0.00 0.00 4.35
2905 2932 2.223829 CCGGAGCAGATTAGATTGACGT 60.224 50.000 0.00 0.00 0.00 4.34
2906 2933 3.046390 CGGAGCAGATTAGATTGACGTC 58.954 50.000 9.11 9.11 0.00 4.34
2907 2934 3.243234 CGGAGCAGATTAGATTGACGTCT 60.243 47.826 17.92 0.00 0.00 4.18
2908 2935 4.295051 GGAGCAGATTAGATTGACGTCTC 58.705 47.826 17.92 6.92 0.00 3.36
2909 2936 4.037446 GGAGCAGATTAGATTGACGTCTCT 59.963 45.833 17.92 14.34 0.00 3.10
2910 2937 5.181690 AGCAGATTAGATTGACGTCTCTC 57.818 43.478 17.92 12.87 0.00 3.20
2911 2938 4.887071 AGCAGATTAGATTGACGTCTCTCT 59.113 41.667 17.92 18.93 0.00 3.10
2912 2939 5.359576 AGCAGATTAGATTGACGTCTCTCTT 59.640 40.000 20.44 8.26 0.00 2.85
2913 2940 6.039616 GCAGATTAGATTGACGTCTCTCTTT 58.960 40.000 20.44 11.84 0.00 2.52
2914 2941 6.533367 GCAGATTAGATTGACGTCTCTCTTTT 59.467 38.462 20.44 11.58 0.00 2.27
2915 2942 7.064016 GCAGATTAGATTGACGTCTCTCTTTTT 59.936 37.037 20.44 9.73 0.00 1.94
2916 2943 8.591312 CAGATTAGATTGACGTCTCTCTTTTTC 58.409 37.037 20.44 15.43 0.00 2.29
2917 2944 7.762159 AGATTAGATTGACGTCTCTCTTTTTCC 59.238 37.037 20.44 9.74 0.00 3.13
2918 2945 5.215252 AGATTGACGTCTCTCTTTTTCCA 57.785 39.130 17.92 0.00 0.00 3.53
2919 2946 5.233988 AGATTGACGTCTCTCTTTTTCCAG 58.766 41.667 17.92 0.00 0.00 3.86
2920 2947 2.755650 TGACGTCTCTCTTTTTCCAGC 58.244 47.619 17.92 0.00 0.00 4.85
2921 2948 2.070028 GACGTCTCTCTTTTTCCAGCC 58.930 52.381 8.70 0.00 0.00 4.85
2922 2949 1.416401 ACGTCTCTCTTTTTCCAGCCA 59.584 47.619 0.00 0.00 0.00 4.75
2923 2950 2.158813 ACGTCTCTCTTTTTCCAGCCAA 60.159 45.455 0.00 0.00 0.00 4.52
2924 2951 2.878406 CGTCTCTCTTTTTCCAGCCAAA 59.122 45.455 0.00 0.00 0.00 3.28
2925 2952 3.315191 CGTCTCTCTTTTTCCAGCCAAAA 59.685 43.478 0.00 0.00 0.00 2.44
2926 2953 4.202010 CGTCTCTCTTTTTCCAGCCAAAAA 60.202 41.667 0.00 0.00 34.72 1.94
3075 3102 0.538516 TGGTTGTGCCACCACCATAC 60.539 55.000 16.25 0.00 42.27 2.39
3083 3110 1.202770 GCCACCACCATACCCTATCAC 60.203 57.143 0.00 0.00 0.00 3.06
3181 3208 0.235665 ACTTGATTGTCTTGCGTGCG 59.764 50.000 0.00 0.00 0.00 5.34
3212 3239 6.398234 TGCATGTGTTTGGTTATACACTTT 57.602 33.333 0.00 0.00 43.82 2.66
3214 3241 6.920758 TGCATGTGTTTGGTTATACACTTTTC 59.079 34.615 0.00 0.00 43.82 2.29
3258 3285 9.624697 TTTTAACATGATTTGTACTTGCTCATC 57.375 29.630 0.00 0.00 37.68 2.92
3261 3288 7.218228 ACATGATTTGTACTTGCTCATCAAA 57.782 32.000 0.00 0.00 36.57 2.69
3262 3289 7.086376 ACATGATTTGTACTTGCTCATCAAAC 58.914 34.615 0.00 0.00 36.57 2.93
3264 3291 6.902341 TGATTTGTACTTGCTCATCAAACTC 58.098 36.000 0.00 0.00 33.65 3.01
3266 3293 6.882610 TTTGTACTTGCTCATCAAACTCAT 57.117 33.333 0.00 0.00 33.65 2.90
3270 3297 8.565896 TGTACTTGCTCATCAAACTCATAATT 57.434 30.769 0.00 0.00 33.65 1.40
3310 3383 8.791327 TTACTATCTTTGTGCTCATCATTTCA 57.209 30.769 0.00 0.00 0.00 2.69
3311 3384 7.876936 ACTATCTTTGTGCTCATCATTTCAT 57.123 32.000 0.00 0.00 0.00 2.57
3312 3385 7.928103 ACTATCTTTGTGCTCATCATTTCATC 58.072 34.615 0.00 0.00 0.00 2.92
3313 3386 6.769134 ATCTTTGTGCTCATCATTTCATCA 57.231 33.333 0.00 0.00 0.00 3.07
3372 3445 5.776173 TTTGCTTTCCAAATCGGTAAAGA 57.224 34.783 0.00 0.00 38.46 2.52
3373 3446 5.975693 TTGCTTTCCAAATCGGTAAAGAT 57.024 34.783 0.00 0.00 35.54 2.40
3374 3447 5.975693 TGCTTTCCAAATCGGTAAAGATT 57.024 34.783 0.00 0.00 42.13 2.40
3375 3448 5.949735 TGCTTTCCAAATCGGTAAAGATTC 58.050 37.500 0.00 0.00 39.69 2.52
3376 3449 5.105917 TGCTTTCCAAATCGGTAAAGATTCC 60.106 40.000 0.00 0.00 39.69 3.01
3377 3450 5.105917 GCTTTCCAAATCGGTAAAGATTCCA 60.106 40.000 0.00 0.00 39.69 3.53
3378 3451 6.571537 GCTTTCCAAATCGGTAAAGATTCCAA 60.572 38.462 0.00 0.00 39.69 3.53
3379 3452 6.902771 TTCCAAATCGGTAAAGATTCCAAA 57.097 33.333 0.00 0.00 39.69 3.28
3380 3453 6.262193 TCCAAATCGGTAAAGATTCCAAAC 57.738 37.500 0.00 0.00 39.69 2.93
3381 3454 5.092781 CCAAATCGGTAAAGATTCCAAACG 58.907 41.667 0.00 0.00 39.69 3.60
3382 3455 5.335348 CCAAATCGGTAAAGATTCCAAACGT 60.335 40.000 0.00 0.00 39.69 3.99
3383 3456 4.939509 ATCGGTAAAGATTCCAAACGTG 57.060 40.909 0.00 0.00 0.00 4.49
3384 3457 3.731089 TCGGTAAAGATTCCAAACGTGT 58.269 40.909 0.00 0.00 0.00 4.49
3385 3458 3.742369 TCGGTAAAGATTCCAAACGTGTC 59.258 43.478 0.00 0.00 0.00 3.67
3386 3459 3.120442 CGGTAAAGATTCCAAACGTGTCC 60.120 47.826 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.702494 CATGTCACTCTGTCACATATATATTGT 57.298 33.333 0.00 0.00 0.00 2.71
1 2 9.702494 ACATGTCACTCTGTCACATATATATTG 57.298 33.333 0.00 0.00 0.00 1.90
3 4 9.702494 CAACATGTCACTCTGTCACATATATAT 57.298 33.333 0.00 0.00 0.00 0.86
4 5 8.912988 TCAACATGTCACTCTGTCACATATATA 58.087 33.333 0.00 0.00 0.00 0.86
5 6 7.785033 TCAACATGTCACTCTGTCACATATAT 58.215 34.615 0.00 0.00 0.00 0.86
6 7 7.169158 TCAACATGTCACTCTGTCACATATA 57.831 36.000 0.00 0.00 0.00 0.86
7 8 6.041423 TCAACATGTCACTCTGTCACATAT 57.959 37.500 0.00 0.00 0.00 1.78
8 9 5.467035 TCAACATGTCACTCTGTCACATA 57.533 39.130 0.00 0.00 0.00 2.29
9 10 4.341366 TCAACATGTCACTCTGTCACAT 57.659 40.909 0.00 0.00 0.00 3.21
10 11 3.817709 TCAACATGTCACTCTGTCACA 57.182 42.857 0.00 0.00 0.00 3.58
11 12 4.751600 TGATTCAACATGTCACTCTGTCAC 59.248 41.667 0.00 0.00 0.00 3.67
12 13 4.751600 GTGATTCAACATGTCACTCTGTCA 59.248 41.667 0.00 0.00 39.24 3.58
13 14 4.751600 TGTGATTCAACATGTCACTCTGTC 59.248 41.667 13.78 2.21 42.03 3.51
14 15 4.707105 TGTGATTCAACATGTCACTCTGT 58.293 39.130 13.78 0.00 42.03 3.41
15 16 5.874895 ATGTGATTCAACATGTCACTCTG 57.125 39.130 13.78 2.67 42.03 3.35
16 17 6.889301 AAATGTGATTCAACATGTCACTCT 57.111 33.333 13.78 1.88 39.89 3.24
17 18 9.630098 AATAAAATGTGATTCAACATGTCACTC 57.370 29.630 13.78 4.13 39.89 3.51
18 19 9.985730 AAATAAAATGTGATTCAACATGTCACT 57.014 25.926 13.78 0.00 39.89 3.41
38 39 9.909644 GACGGAGAGAGTAGCATATTAAATAAA 57.090 33.333 0.00 0.00 0.00 1.40
39 40 8.521176 GGACGGAGAGAGTAGCATATTAAATAA 58.479 37.037 0.00 0.00 0.00 1.40
40 41 7.122353 GGGACGGAGAGAGTAGCATATTAAATA 59.878 40.741 0.00 0.00 0.00 1.40
41 42 6.071278 GGGACGGAGAGAGTAGCATATTAAAT 60.071 42.308 0.00 0.00 0.00 1.40
42 43 5.243283 GGGACGGAGAGAGTAGCATATTAAA 59.757 44.000 0.00 0.00 0.00 1.52
43 44 4.765856 GGGACGGAGAGAGTAGCATATTAA 59.234 45.833 0.00 0.00 0.00 1.40
44 45 4.202535 TGGGACGGAGAGAGTAGCATATTA 60.203 45.833 0.00 0.00 0.00 0.98
45 46 3.158676 GGGACGGAGAGAGTAGCATATT 58.841 50.000 0.00 0.00 0.00 1.28
46 47 2.108425 TGGGACGGAGAGAGTAGCATAT 59.892 50.000 0.00 0.00 0.00 1.78
47 48 1.493446 TGGGACGGAGAGAGTAGCATA 59.507 52.381 0.00 0.00 0.00 3.14
48 49 0.259065 TGGGACGGAGAGAGTAGCAT 59.741 55.000 0.00 0.00 0.00 3.79
49 50 0.039180 TTGGGACGGAGAGAGTAGCA 59.961 55.000 0.00 0.00 0.00 3.49
50 51 1.183549 TTTGGGACGGAGAGAGTAGC 58.816 55.000 0.00 0.00 0.00 3.58
51 52 5.127356 ACTTATTTTGGGACGGAGAGAGTAG 59.873 44.000 0.00 0.00 0.00 2.57
52 53 5.021458 ACTTATTTTGGGACGGAGAGAGTA 58.979 41.667 0.00 0.00 0.00 2.59
53 54 3.838903 ACTTATTTTGGGACGGAGAGAGT 59.161 43.478 0.00 0.00 0.00 3.24
54 55 4.184629 CACTTATTTTGGGACGGAGAGAG 58.815 47.826 0.00 0.00 0.00 3.20
55 56 3.581332 ACACTTATTTTGGGACGGAGAGA 59.419 43.478 0.00 0.00 0.00 3.10
56 57 3.933332 GACACTTATTTTGGGACGGAGAG 59.067 47.826 0.00 0.00 0.00 3.20
57 58 3.581332 AGACACTTATTTTGGGACGGAGA 59.419 43.478 0.00 0.00 0.00 3.71
58 59 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
59 60 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
60 61 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
61 62 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
62 63 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
63 64 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
64 65 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
65 66 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
70 71 9.694137 GAGTTAGTACAAAGTTGAGACACTTAT 57.306 33.333 0.00 0.00 35.87 1.73
71 72 8.139989 GGAGTTAGTACAAAGTTGAGACACTTA 58.860 37.037 0.00 0.00 35.87 2.24
72 73 6.985059 GGAGTTAGTACAAAGTTGAGACACTT 59.015 38.462 0.00 0.00 38.74 3.16
73 74 6.097839 TGGAGTTAGTACAAAGTTGAGACACT 59.902 38.462 0.00 0.00 0.00 3.55
74 75 6.278363 TGGAGTTAGTACAAAGTTGAGACAC 58.722 40.000 0.00 0.00 0.00 3.67
75 76 6.097839 ACTGGAGTTAGTACAAAGTTGAGACA 59.902 38.462 0.00 0.00 0.00 3.41
76 77 6.514063 ACTGGAGTTAGTACAAAGTTGAGAC 58.486 40.000 0.00 0.00 0.00 3.36
77 78 6.726490 ACTGGAGTTAGTACAAAGTTGAGA 57.274 37.500 0.00 0.00 0.00 3.27
91 92 9.649167 GCTTAGTAGAAATTTGTACTGGAGTTA 57.351 33.333 28.96 12.09 37.74 2.24
92 93 8.376270 AGCTTAGTAGAAATTTGTACTGGAGTT 58.624 33.333 28.96 22.05 37.74 3.01
93 94 7.908453 AGCTTAGTAGAAATTTGTACTGGAGT 58.092 34.615 28.96 16.93 37.74 3.85
94 95 8.035394 TGAGCTTAGTAGAAATTTGTACTGGAG 58.965 37.037 28.96 25.40 37.74 3.86
95 96 7.903145 TGAGCTTAGTAGAAATTTGTACTGGA 58.097 34.615 28.96 19.30 37.74 3.86
96 97 8.547967 TTGAGCTTAGTAGAAATTTGTACTGG 57.452 34.615 28.96 22.75 37.74 4.00
101 102 8.903820 AGTGTTTTGAGCTTAGTAGAAATTTGT 58.096 29.630 0.00 0.00 0.00 2.83
102 103 9.736023 AAGTGTTTTGAGCTTAGTAGAAATTTG 57.264 29.630 0.00 0.00 0.00 2.32
109 110 9.612620 CCAAAATAAGTGTTTTGAGCTTAGTAG 57.387 33.333 13.05 0.00 46.78 2.57
110 111 8.573035 CCCAAAATAAGTGTTTTGAGCTTAGTA 58.427 33.333 13.05 0.00 46.78 1.82
111 112 7.286775 TCCCAAAATAAGTGTTTTGAGCTTAGT 59.713 33.333 13.05 0.00 46.78 2.24
112 113 7.595130 GTCCCAAAATAAGTGTTTTGAGCTTAG 59.405 37.037 13.05 0.00 46.78 2.18
113 114 7.430441 GTCCCAAAATAAGTGTTTTGAGCTTA 58.570 34.615 13.05 0.00 46.78 3.09
114 115 6.280643 GTCCCAAAATAAGTGTTTTGAGCTT 58.719 36.000 13.05 0.00 46.78 3.74
115 116 5.507315 CGTCCCAAAATAAGTGTTTTGAGCT 60.507 40.000 13.05 0.00 46.78 4.09
116 117 4.679654 CGTCCCAAAATAAGTGTTTTGAGC 59.320 41.667 13.05 4.26 46.78 4.26
117 118 5.009210 TCCGTCCCAAAATAAGTGTTTTGAG 59.991 40.000 13.05 2.46 46.78 3.02
118 119 4.888239 TCCGTCCCAAAATAAGTGTTTTGA 59.112 37.500 13.05 0.00 46.78 2.69
119 120 5.189659 TCCGTCCCAAAATAAGTGTTTTG 57.810 39.130 6.35 6.35 44.63 2.44
120 121 4.279922 CCTCCGTCCCAAAATAAGTGTTTT 59.720 41.667 0.00 0.00 0.00 2.43
121 122 3.824443 CCTCCGTCCCAAAATAAGTGTTT 59.176 43.478 0.00 0.00 0.00 2.83
122 123 3.181437 ACCTCCGTCCCAAAATAAGTGTT 60.181 43.478 0.00 0.00 0.00 3.32
123 124 2.374170 ACCTCCGTCCCAAAATAAGTGT 59.626 45.455 0.00 0.00 0.00 3.55
124 125 3.067684 ACCTCCGTCCCAAAATAAGTG 57.932 47.619 0.00 0.00 0.00 3.16
125 126 3.842436 ACTACCTCCGTCCCAAAATAAGT 59.158 43.478 0.00 0.00 0.00 2.24
126 127 4.482952 ACTACCTCCGTCCCAAAATAAG 57.517 45.455 0.00 0.00 0.00 1.73
127 128 5.025453 ACTACTACCTCCGTCCCAAAATAA 58.975 41.667 0.00 0.00 0.00 1.40
128 129 4.613437 ACTACTACCTCCGTCCCAAAATA 58.387 43.478 0.00 0.00 0.00 1.40
129 130 3.447950 ACTACTACCTCCGTCCCAAAAT 58.552 45.455 0.00 0.00 0.00 1.82
130 131 2.893424 ACTACTACCTCCGTCCCAAAA 58.107 47.619 0.00 0.00 0.00 2.44
131 132 2.610438 ACTACTACCTCCGTCCCAAA 57.390 50.000 0.00 0.00 0.00 3.28
132 133 2.564062 CAAACTACTACCTCCGTCCCAA 59.436 50.000 0.00 0.00 0.00 4.12
133 134 2.173519 CAAACTACTACCTCCGTCCCA 58.826 52.381 0.00 0.00 0.00 4.37
134 135 2.426381 CTCAAACTACTACCTCCGTCCC 59.574 54.545 0.00 0.00 0.00 4.46
135 136 3.087781 ACTCAAACTACTACCTCCGTCC 58.912 50.000 0.00 0.00 0.00 4.79
136 137 4.780275 AACTCAAACTACTACCTCCGTC 57.220 45.455 0.00 0.00 0.00 4.79
137 138 5.072741 TGTAACTCAAACTACTACCTCCGT 58.927 41.667 0.00 0.00 0.00 4.69
138 139 5.633830 TGTAACTCAAACTACTACCTCCG 57.366 43.478 0.00 0.00 0.00 4.63
139 140 7.609056 TCAATGTAACTCAAACTACTACCTCC 58.391 38.462 0.00 0.00 0.00 4.30
140 141 9.303537 GATCAATGTAACTCAAACTACTACCTC 57.696 37.037 0.00 0.00 0.00 3.85
141 142 9.036980 AGATCAATGTAACTCAAACTACTACCT 57.963 33.333 0.00 0.00 0.00 3.08
147 148 9.444600 GGGTTTAGATCAATGTAACTCAAACTA 57.555 33.333 0.00 0.00 0.00 2.24
148 149 8.164070 AGGGTTTAGATCAATGTAACTCAAACT 58.836 33.333 0.00 0.00 0.00 2.66
149 150 8.336801 AGGGTTTAGATCAATGTAACTCAAAC 57.663 34.615 0.00 0.00 0.00 2.93
202 204 5.299279 ACACCTCAAATGTAAACACCTGAAG 59.701 40.000 0.00 0.00 0.00 3.02
205 207 5.514274 AACACCTCAAATGTAAACACCTG 57.486 39.130 0.00 0.00 0.00 4.00
231 233 0.909623 TCCTTCCCCTCGAAATGACC 59.090 55.000 0.00 0.00 0.00 4.02
245 247 5.205565 CAAAAGCTGTACGAAACTTCCTTC 58.794 41.667 0.00 0.00 0.00 3.46
249 251 5.329493 ACAACAAAAGCTGTACGAAACTTC 58.671 37.500 0.00 0.00 37.23 3.01
252 254 6.384178 AAAACAACAAAAGCTGTACGAAAC 57.616 33.333 0.00 0.00 37.23 2.78
296 298 2.035961 GCAACGACTGGATCCATAGCTA 59.964 50.000 16.63 0.00 0.00 3.32
309 311 1.202371 TGACGAGTTCAAGCAACGACT 60.202 47.619 0.00 0.00 40.32 4.18
376 378 3.933048 GAGGCCATGGCTGCTGTGT 62.933 63.158 34.70 11.80 38.98 3.72
445 450 1.437772 GATCTCGCGGAGAAGGTCGA 61.438 60.000 6.13 0.00 42.27 4.20
452 457 1.025812 GGAAGAAGATCTCGCGGAGA 58.974 55.000 6.13 8.58 43.20 3.71
468 473 4.408396 TAGGGAGGGCAGGCGGAA 62.408 66.667 0.00 0.00 0.00 4.30
476 481 4.862823 AGGCTCGGTAGGGAGGGC 62.863 72.222 0.00 0.00 34.56 5.19
480 485 2.124403 GACGAGGCTCGGTAGGGA 60.124 66.667 36.81 0.00 45.59 4.20
587 592 3.766496 GAGGAAGAGCGCGAGGAGC 62.766 68.421 12.10 0.00 43.95 4.70
743 748 2.105128 CGCCGCTAGGAGACTTGG 59.895 66.667 0.00 0.00 43.67 3.61
774 779 3.443925 CCGCTCCAGCTGACGAGA 61.444 66.667 17.39 2.35 39.32 4.04
836 841 2.039070 AGATGTGGAGATCCAGAGCCC 61.039 57.143 10.34 0.31 45.60 5.19
850 855 2.040009 AACCCGGGCCGATAGATGTG 62.040 60.000 30.79 7.64 39.76 3.21
864 869 2.502213 TGTCGATGTAGCATAACCCG 57.498 50.000 0.00 0.00 0.00 5.28
904 909 0.956633 TGACGATATGCGGAGGGTAC 59.043 55.000 0.00 0.00 46.49 3.34
906 911 1.464376 CCTGACGATATGCGGAGGGT 61.464 60.000 0.00 0.00 46.49 4.34
1010 1015 4.113354 CAGCGTACTAGTTGGGAGAATTC 58.887 47.826 0.00 0.00 0.00 2.17
1021 1026 2.722201 GCCCCAGCAGCGTACTAGT 61.722 63.158 0.00 0.00 39.53 2.57
1135 1140 6.208797 TCGATTAGAGAGAACTGAAAAGTGGA 59.791 38.462 0.00 0.00 0.00 4.02
1212 1217 2.500910 CAGCTTCTCATCCTTGGTCTCT 59.499 50.000 0.00 0.00 0.00 3.10
1233 1238 6.700081 TGTTGTCCTTTATATCTACGATGCAC 59.300 38.462 0.00 0.00 0.00 4.57
1300 1305 2.571202 TGTACATCATCCACCTGCTGAA 59.429 45.455 0.00 0.00 0.00 3.02
1314 1319 4.843728 TCAATGGGAACTCCTTGTACATC 58.156 43.478 0.00 0.00 36.20 3.06
1367 1372 2.044793 ACAACCCTCTTCCTCCATCA 57.955 50.000 0.00 0.00 0.00 3.07
1680 1696 3.134458 AGAACTGGTCAGAAGCTTTTCG 58.866 45.455 0.00 0.00 0.00 3.46
1826 1842 8.455903 AAATATGCTTGTGCTATCATGTAACT 57.544 30.769 0.00 0.00 40.48 2.24
1916 1932 8.729756 TGTGATATTGTTCACCAGAAAAGTATG 58.270 33.333 2.43 0.00 44.37 2.39
1924 1940 7.144722 GTGAAATGTGATATTGTTCACCAGA 57.855 36.000 3.96 0.00 44.37 3.86
1928 1944 7.538678 GTGAAGGTGAAATGTGATATTGTTCAC 59.461 37.037 6.34 6.34 44.66 3.18
1929 1945 7.448161 AGTGAAGGTGAAATGTGATATTGTTCA 59.552 33.333 0.00 0.00 0.00 3.18
2010 2026 7.946917 TCAAGTATTTGTCCACAGAAATTGTGC 60.947 37.037 1.87 0.00 43.65 4.57
2055 2071 1.002544 CCTCCTGTGACAAAGAGGGAC 59.997 57.143 18.84 0.00 41.90 4.46
2104 2120 1.097547 CGGGACCATCATCTGCAACC 61.098 60.000 0.00 0.00 0.00 3.77
2138 2154 3.791245 CAGTGACAAGGATAGAGGAAGC 58.209 50.000 0.00 0.00 0.00 3.86
2167 2183 0.607112 TCAGAGCTTGGCTGAGTGAG 59.393 55.000 0.00 0.00 39.88 3.51
2180 2196 0.179702 TCACTGCCATCCATCAGAGC 59.820 55.000 0.00 0.00 34.57 4.09
2216 2232 4.543590 AGAAGTCATGTAACTCCACCAG 57.456 45.455 0.00 0.00 0.00 4.00
2228 2244 4.993584 AGTACTGTCAAGCAAGAAGTCATG 59.006 41.667 0.00 0.00 0.00 3.07
2264 2280 2.608016 GCAAAAAGGCAGCTAACTCCAC 60.608 50.000 0.00 0.00 0.00 4.02
2347 2363 0.892755 TACGGTCTCTTGCGGTCATT 59.107 50.000 0.00 0.00 0.00 2.57
2396 2412 4.058817 CTCTTTCTGTACTTGGTGTGTCC 58.941 47.826 0.00 0.00 0.00 4.02
2445 2461 0.911769 TGACATCTGCCCCCTGTAAG 59.088 55.000 0.00 0.00 0.00 2.34
2475 2491 1.032014 TCAACTGGCAAAGAAGTGGC 58.968 50.000 0.00 0.00 44.09 5.01
2489 2505 8.939929 CACATGATCACTTACAATACTTCAACT 58.060 33.333 0.00 0.00 0.00 3.16
2517 2544 9.869844 GCTTGTATCATCAGATTAAACACATAC 57.130 33.333 0.00 0.00 35.67 2.39
2522 2549 9.844790 CAAAAGCTTGTATCATCAGATTAAACA 57.155 29.630 0.00 0.00 35.67 2.83
2542 2569 3.002553 CACCAAGGCATTTCAACAAAAGC 59.997 43.478 0.00 0.00 0.00 3.51
2590 2617 8.967918 AGTATACAATACACACACATACACTCT 58.032 33.333 5.50 0.00 0.00 3.24
2621 2648 9.056005 GCAAACATCATCAAACCTAGTATATGA 57.944 33.333 0.00 0.00 0.00 2.15
2622 2649 8.839343 TGCAAACATCATCAAACCTAGTATATG 58.161 33.333 0.00 0.00 0.00 1.78
2623 2650 8.978874 TGCAAACATCATCAAACCTAGTATAT 57.021 30.769 0.00 0.00 0.00 0.86
2624 2651 8.800370 TTGCAAACATCATCAAACCTAGTATA 57.200 30.769 0.00 0.00 0.00 1.47
2625 2652 7.701539 TTGCAAACATCATCAAACCTAGTAT 57.298 32.000 0.00 0.00 0.00 2.12
2642 2669 8.970638 TCATATTGATGGAGAGTGGTTGCAAAC 61.971 40.741 7.78 7.78 38.80 2.93
2643 2670 2.655090 TGATGGAGAGTGGTTGCAAA 57.345 45.000 0.00 0.00 0.00 3.68
2644 2671 2.655090 TTGATGGAGAGTGGTTGCAA 57.345 45.000 0.00 0.00 0.00 4.08
2645 2672 2.885135 ATTGATGGAGAGTGGTTGCA 57.115 45.000 0.00 0.00 0.00 4.08
2646 2673 4.274459 GTCATATTGATGGAGAGTGGTTGC 59.726 45.833 0.00 0.00 33.49 4.17
2647 2674 5.678583 AGTCATATTGATGGAGAGTGGTTG 58.321 41.667 0.00 0.00 33.49 3.77
2648 2675 5.965033 AGTCATATTGATGGAGAGTGGTT 57.035 39.130 0.00 0.00 33.49 3.67
2649 2676 6.139671 ACTAGTCATATTGATGGAGAGTGGT 58.860 40.000 0.00 0.00 33.49 4.16
2650 2677 6.662865 ACTAGTCATATTGATGGAGAGTGG 57.337 41.667 0.00 0.00 33.49 4.00
2651 2678 8.420222 AGAAACTAGTCATATTGATGGAGAGTG 58.580 37.037 0.00 0.00 33.49 3.51
2652 2679 8.546083 AGAAACTAGTCATATTGATGGAGAGT 57.454 34.615 0.00 0.00 33.49 3.24
2653 2680 7.807433 CGAGAAACTAGTCATATTGATGGAGAG 59.193 40.741 0.00 0.00 33.49 3.20
2654 2681 7.285629 ACGAGAAACTAGTCATATTGATGGAGA 59.714 37.037 0.00 0.00 33.49 3.71
2655 2682 7.429633 ACGAGAAACTAGTCATATTGATGGAG 58.570 38.462 0.00 0.00 33.49 3.86
2656 2683 7.348080 ACGAGAAACTAGTCATATTGATGGA 57.652 36.000 0.00 0.00 33.49 3.41
2657 2684 8.353684 AGTACGAGAAACTAGTCATATTGATGG 58.646 37.037 0.00 0.00 33.49 3.51
2658 2685 9.388346 GAGTACGAGAAACTAGTCATATTGATG 57.612 37.037 0.00 0.00 0.00 3.07
2659 2686 9.344772 AGAGTACGAGAAACTAGTCATATTGAT 57.655 33.333 0.00 0.00 0.00 2.57
2660 2687 8.613482 CAGAGTACGAGAAACTAGTCATATTGA 58.387 37.037 0.00 0.00 0.00 2.57
2661 2688 7.377397 GCAGAGTACGAGAAACTAGTCATATTG 59.623 40.741 0.00 0.00 0.00 1.90
2662 2689 7.283580 AGCAGAGTACGAGAAACTAGTCATATT 59.716 37.037 0.00 0.00 0.00 1.28
2663 2690 6.768861 AGCAGAGTACGAGAAACTAGTCATAT 59.231 38.462 0.00 0.00 0.00 1.78
2664 2691 6.114089 AGCAGAGTACGAGAAACTAGTCATA 58.886 40.000 0.00 0.00 0.00 2.15
2665 2692 4.944930 AGCAGAGTACGAGAAACTAGTCAT 59.055 41.667 0.00 0.00 0.00 3.06
2666 2693 4.325119 AGCAGAGTACGAGAAACTAGTCA 58.675 43.478 0.00 0.00 0.00 3.41
2667 2694 4.950434 AGCAGAGTACGAGAAACTAGTC 57.050 45.455 0.00 0.00 0.00 2.59
2668 2695 5.005094 AGAAGCAGAGTACGAGAAACTAGT 58.995 41.667 0.00 0.00 0.00 2.57
2669 2696 5.554822 AGAAGCAGAGTACGAGAAACTAG 57.445 43.478 0.00 0.00 0.00 2.57
2670 2697 5.961396 AAGAAGCAGAGTACGAGAAACTA 57.039 39.130 0.00 0.00 0.00 2.24
2671 2698 4.857509 AAGAAGCAGAGTACGAGAAACT 57.142 40.909 0.00 0.00 0.00 2.66
2672 2699 5.333416 CCAAAAGAAGCAGAGTACGAGAAAC 60.333 44.000 0.00 0.00 0.00 2.78
2673 2700 4.750098 CCAAAAGAAGCAGAGTACGAGAAA 59.250 41.667 0.00 0.00 0.00 2.52
2674 2701 4.307432 CCAAAAGAAGCAGAGTACGAGAA 58.693 43.478 0.00 0.00 0.00 2.87
2675 2702 3.306088 CCCAAAAGAAGCAGAGTACGAGA 60.306 47.826 0.00 0.00 0.00 4.04
2676 2703 2.996621 CCCAAAAGAAGCAGAGTACGAG 59.003 50.000 0.00 0.00 0.00 4.18
2677 2704 2.367567 ACCCAAAAGAAGCAGAGTACGA 59.632 45.455 0.00 0.00 0.00 3.43
2678 2705 2.737252 GACCCAAAAGAAGCAGAGTACG 59.263 50.000 0.00 0.00 0.00 3.67
2679 2706 3.075148 GGACCCAAAAGAAGCAGAGTAC 58.925 50.000 0.00 0.00 0.00 2.73
2680 2707 2.708861 TGGACCCAAAAGAAGCAGAGTA 59.291 45.455 0.00 0.00 0.00 2.59
2681 2708 1.494721 TGGACCCAAAAGAAGCAGAGT 59.505 47.619 0.00 0.00 0.00 3.24
2682 2709 2.276732 TGGACCCAAAAGAAGCAGAG 57.723 50.000 0.00 0.00 0.00 3.35
2683 2710 2.746279 TTGGACCCAAAAGAAGCAGA 57.254 45.000 0.00 0.00 32.44 4.26
2684 2711 2.695147 ACTTTGGACCCAAAAGAAGCAG 59.305 45.455 14.38 4.65 44.07 4.24
2685 2712 2.693074 GACTTTGGACCCAAAAGAAGCA 59.307 45.455 14.38 0.00 44.07 3.91
2686 2713 2.959030 AGACTTTGGACCCAAAAGAAGC 59.041 45.455 14.38 3.99 44.07 3.86
2687 2714 4.644685 TCAAGACTTTGGACCCAAAAGAAG 59.355 41.667 14.38 6.24 44.07 2.85
2688 2715 4.605183 TCAAGACTTTGGACCCAAAAGAA 58.395 39.130 14.38 0.00 44.07 2.52
2689 2716 4.207165 CTCAAGACTTTGGACCCAAAAGA 58.793 43.478 14.38 7.52 44.07 2.52
2690 2717 3.319122 CCTCAAGACTTTGGACCCAAAAG 59.681 47.826 14.38 10.99 44.07 2.27
2691 2718 3.295973 CCTCAAGACTTTGGACCCAAAA 58.704 45.455 14.38 0.00 44.07 2.44
2692 2719 2.944129 CCTCAAGACTTTGGACCCAAA 58.056 47.619 13.03 13.03 42.77 3.28
2693 2720 1.478654 GCCTCAAGACTTTGGACCCAA 60.479 52.381 7.90 0.00 34.97 4.12
2694 2721 0.110486 GCCTCAAGACTTTGGACCCA 59.890 55.000 7.90 0.00 34.97 4.51
2695 2722 0.402121 AGCCTCAAGACTTTGGACCC 59.598 55.000 7.90 0.00 34.97 4.46
2696 2723 1.882623 CAAGCCTCAAGACTTTGGACC 59.117 52.381 7.90 0.00 34.97 4.46
2697 2724 1.882623 CCAAGCCTCAAGACTTTGGAC 59.117 52.381 7.90 1.15 34.97 4.02
2698 2725 1.819305 GCCAAGCCTCAAGACTTTGGA 60.819 52.381 5.67 0.00 34.97 3.53
2699 2726 0.600057 GCCAAGCCTCAAGACTTTGG 59.400 55.000 0.00 0.00 34.97 3.28
2700 2727 0.600057 GGCCAAGCCTCAAGACTTTG 59.400 55.000 0.00 0.00 46.69 2.77
2701 2728 3.042481 GGCCAAGCCTCAAGACTTT 57.958 52.632 0.00 0.00 46.69 2.66
2702 2729 4.830573 GGCCAAGCCTCAAGACTT 57.169 55.556 0.00 0.00 46.69 3.01
2733 2760 5.186996 TCTTTCAAGAACAAGCACATTCC 57.813 39.130 0.00 0.00 30.73 3.01
2739 2766 4.652421 TGCAATCTTTCAAGAACAAGCA 57.348 36.364 0.00 0.00 38.77 3.91
2761 2788 2.512485 TTTCCTTCGCGAACACTACA 57.488 45.000 19.38 0.00 0.00 2.74
2773 2800 1.399791 CGCTCAGGCTTGATTTCCTTC 59.600 52.381 0.00 0.00 36.09 3.46
2818 2845 1.685765 GGCCACTCCCCATTTTCCC 60.686 63.158 0.00 0.00 0.00 3.97
2861 2888 8.524487 CCGGCTGTAATTAACTAGAGAATATCT 58.476 37.037 0.00 0.00 42.47 1.98
2862 2889 8.521176 TCCGGCTGTAATTAACTAGAGAATATC 58.479 37.037 0.00 0.00 0.00 1.63
2863 2890 8.418597 TCCGGCTGTAATTAACTAGAGAATAT 57.581 34.615 0.00 0.00 0.00 1.28
2864 2891 7.523380 GCTCCGGCTGTAATTAACTAGAGAATA 60.523 40.741 0.00 0.00 35.22 1.75
2865 2892 6.726490 TCCGGCTGTAATTAACTAGAGAAT 57.274 37.500 0.00 0.00 0.00 2.40
2866 2893 5.451520 GCTCCGGCTGTAATTAACTAGAGAA 60.452 44.000 0.00 0.00 35.22 2.87
2867 2894 4.037684 GCTCCGGCTGTAATTAACTAGAGA 59.962 45.833 0.00 0.00 35.22 3.10
2868 2895 4.202121 TGCTCCGGCTGTAATTAACTAGAG 60.202 45.833 0.00 0.00 39.59 2.43
2869 2896 3.702548 TGCTCCGGCTGTAATTAACTAGA 59.297 43.478 0.00 0.00 39.59 2.43
2870 2897 4.051922 CTGCTCCGGCTGTAATTAACTAG 58.948 47.826 0.00 0.00 39.59 2.57
2871 2898 3.702548 TCTGCTCCGGCTGTAATTAACTA 59.297 43.478 0.00 0.00 39.59 2.24
2872 2899 2.500098 TCTGCTCCGGCTGTAATTAACT 59.500 45.455 0.00 0.00 39.59 2.24
2873 2900 2.901249 TCTGCTCCGGCTGTAATTAAC 58.099 47.619 0.00 0.00 39.59 2.01
2874 2901 3.838244 ATCTGCTCCGGCTGTAATTAA 57.162 42.857 0.00 0.00 39.59 1.40
2875 2902 3.838244 AATCTGCTCCGGCTGTAATTA 57.162 42.857 0.00 0.00 39.59 1.40
2876 2903 2.717639 AATCTGCTCCGGCTGTAATT 57.282 45.000 0.00 0.00 39.59 1.40
2877 2904 2.965831 TCTAATCTGCTCCGGCTGTAAT 59.034 45.455 0.00 0.00 39.59 1.89
2878 2905 2.384828 TCTAATCTGCTCCGGCTGTAA 58.615 47.619 0.00 0.00 39.59 2.41
2879 2906 2.067365 TCTAATCTGCTCCGGCTGTA 57.933 50.000 0.00 0.00 39.59 2.74
2880 2907 1.418334 ATCTAATCTGCTCCGGCTGT 58.582 50.000 0.00 0.00 39.59 4.40
2881 2908 2.141517 CAATCTAATCTGCTCCGGCTG 58.858 52.381 0.00 0.00 39.59 4.85
2882 2909 2.042464 TCAATCTAATCTGCTCCGGCT 58.958 47.619 0.00 0.00 39.59 5.52
2883 2910 2.139118 GTCAATCTAATCTGCTCCGGC 58.861 52.381 0.00 0.00 39.26 6.13
2884 2911 2.223829 ACGTCAATCTAATCTGCTCCGG 60.224 50.000 0.00 0.00 0.00 5.14
2885 2912 3.046390 GACGTCAATCTAATCTGCTCCG 58.954 50.000 11.55 0.00 0.00 4.63
2886 2913 4.037446 AGAGACGTCAATCTAATCTGCTCC 59.963 45.833 19.50 0.00 0.00 4.70
2887 2914 5.008613 AGAGAGACGTCAATCTAATCTGCTC 59.991 44.000 19.50 1.26 0.00 4.26
2888 2915 4.887071 AGAGAGACGTCAATCTAATCTGCT 59.113 41.667 19.50 6.60 0.00 4.24
2889 2916 5.181690 AGAGAGACGTCAATCTAATCTGC 57.818 43.478 19.50 4.61 0.00 4.26
2890 2917 8.472683 AAAAAGAGAGACGTCAATCTAATCTG 57.527 34.615 19.50 0.00 29.53 2.90
2891 2918 7.762159 GGAAAAAGAGAGACGTCAATCTAATCT 59.238 37.037 19.50 9.67 0.00 2.40
2892 2919 7.545965 TGGAAAAAGAGAGACGTCAATCTAATC 59.454 37.037 19.50 16.16 0.00 1.75
2893 2920 7.386851 TGGAAAAAGAGAGACGTCAATCTAAT 58.613 34.615 19.50 9.78 0.00 1.73
2894 2921 6.755206 TGGAAAAAGAGAGACGTCAATCTAA 58.245 36.000 19.50 1.05 0.00 2.10
2895 2922 6.340962 TGGAAAAAGAGAGACGTCAATCTA 57.659 37.500 19.50 1.45 0.00 1.98
2896 2923 5.215252 TGGAAAAAGAGAGACGTCAATCT 57.785 39.130 19.50 16.73 0.00 2.40
2897 2924 4.143009 GCTGGAAAAAGAGAGACGTCAATC 60.143 45.833 19.50 14.66 0.00 2.67
2898 2925 3.748568 GCTGGAAAAAGAGAGACGTCAAT 59.251 43.478 19.50 5.13 0.00 2.57
2899 2926 3.131396 GCTGGAAAAAGAGAGACGTCAA 58.869 45.455 19.50 0.00 0.00 3.18
2900 2927 2.548067 GGCTGGAAAAAGAGAGACGTCA 60.548 50.000 19.50 0.00 0.00 4.35
2901 2928 2.070028 GGCTGGAAAAAGAGAGACGTC 58.930 52.381 7.70 7.70 0.00 4.34
2902 2929 1.416401 TGGCTGGAAAAAGAGAGACGT 59.584 47.619 0.00 0.00 0.00 4.34
2903 2930 2.169832 TGGCTGGAAAAAGAGAGACG 57.830 50.000 0.00 0.00 0.00 4.18
2904 2931 4.918810 TTTTGGCTGGAAAAAGAGAGAC 57.081 40.909 0.00 0.00 0.00 3.36
2924 2951 9.979578 TGTCAACTGATTGTTAGCATAATTTTT 57.020 25.926 0.00 0.00 37.07 1.94
2925 2952 9.630098 CTGTCAACTGATTGTTAGCATAATTTT 57.370 29.630 0.00 0.00 37.07 1.82
2926 2953 9.013229 TCTGTCAACTGATTGTTAGCATAATTT 57.987 29.630 0.00 0.00 37.07 1.82
2927 2954 8.565896 TCTGTCAACTGATTGTTAGCATAATT 57.434 30.769 0.00 0.00 37.07 1.40
2928 2955 8.743085 ATCTGTCAACTGATTGTTAGCATAAT 57.257 30.769 0.00 0.00 37.07 1.28
2929 2956 8.565896 AATCTGTCAACTGATTGTTAGCATAA 57.434 30.769 12.67 0.00 41.12 1.90
3072 3099 9.838339 GCTATAAATGCATAAGTGATAGGGTAT 57.162 33.333 0.00 0.00 0.00 2.73
3075 3102 7.341805 AGGCTATAAATGCATAAGTGATAGGG 58.658 38.462 0.00 0.00 0.00 3.53
3146 3173 9.708222 GACAATCAAGTATGACATGTTGTTATC 57.292 33.333 0.00 0.00 38.42 1.75
3157 3184 4.641954 CACGCAAGACAATCAAGTATGAC 58.358 43.478 0.00 0.00 38.77 3.06
3242 3269 6.882610 TGAGTTTGATGAGCAAGTACAAAT 57.117 33.333 0.00 0.00 37.87 2.32
3243 3270 6.882610 ATGAGTTTGATGAGCAAGTACAAA 57.117 33.333 0.00 0.00 37.87 2.83
3244 3271 7.977789 TTATGAGTTTGATGAGCAAGTACAA 57.022 32.000 0.00 0.00 37.87 2.41
3246 3273 9.846248 AAAATTATGAGTTTGATGAGCAAGTAC 57.154 29.630 0.00 0.00 37.87 2.73
3363 3436 3.731089 ACACGTTTGGAATCTTTACCGA 58.269 40.909 0.00 0.00 0.00 4.69
3364 3437 3.120442 GGACACGTTTGGAATCTTTACCG 60.120 47.826 0.00 0.00 0.00 4.02
3365 3438 4.414999 GGACACGTTTGGAATCTTTACC 57.585 45.455 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.