Multiple sequence alignment - TraesCS2D01G490100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G490100 chr2D 100.000 5536 0 0 1 5536 588999796 589005331 0.000000e+00 10224.0
1 TraesCS2D01G490100 chr2A 93.640 2956 117 19 818 3719 723538592 723541530 0.000000e+00 4351.0
2 TraesCS2D01G490100 chr2A 98.519 878 13 0 3698 4575 723541686 723542563 0.000000e+00 1550.0
3 TraesCS2D01G490100 chr2A 87.448 725 78 11 4816 5533 520555689 520556407 0.000000e+00 822.0
4 TraesCS2D01G490100 chr2A 92.469 239 18 0 4575 4813 723552543 723552781 5.310000e-90 342.0
5 TraesCS2D01G490100 chr2A 87.665 227 15 5 599 820 723536159 723536377 9.210000e-63 252.0
6 TraesCS2D01G490100 chr2A 95.556 45 2 0 557 601 723536047 723536091 7.690000e-09 73.1
7 TraesCS2D01G490100 chr2B 94.588 2790 124 8 2044 4813 712617421 712620203 0.000000e+00 4290.0
8 TraesCS2D01G490100 chr2B 84.832 1312 123 38 571 1824 712615912 712617205 0.000000e+00 1251.0
9 TraesCS2D01G490100 chr2B 92.973 185 12 1 1831 2014 712617242 712617426 9.140000e-68 268.0
10 TraesCS2D01G490100 chr2B 81.897 116 13 2 742 849 712615874 712615989 2.120000e-14 91.6
11 TraesCS2D01G490100 chr7D 92.649 721 48 5 4816 5533 438683209 438683927 0.000000e+00 1033.0
12 TraesCS2D01G490100 chr7D 92.490 719 47 4 4819 5536 599073396 599072684 0.000000e+00 1022.0
13 TraesCS2D01G490100 chr7D 91.875 640 49 3 4816 5453 543385452 543386090 0.000000e+00 891.0
14 TraesCS2D01G490100 chr7D 89.441 161 16 1 2133 2293 447053503 447053662 9.400000e-48 202.0
15 TraesCS2D01G490100 chr5D 91.655 719 58 2 4819 5536 169946030 169945313 0.000000e+00 994.0
16 TraesCS2D01G490100 chr3D 91.377 719 61 1 4816 5533 43267750 43268468 0.000000e+00 983.0
17 TraesCS2D01G490100 chr1D 91.341 716 59 3 4813 5525 12540324 12541039 0.000000e+00 976.0
18 TraesCS2D01G490100 chr5A 89.889 722 71 2 4816 5536 391776329 391777049 0.000000e+00 928.0
19 TraesCS2D01G490100 chr1A 89.496 714 73 2 4819 5531 294080572 294079860 0.000000e+00 902.0
20 TraesCS2D01G490100 chr7A 74.638 1451 336 23 2347 3780 94490211 94488776 3.670000e-171 612.0
21 TraesCS2D01G490100 chr4D 87.931 174 18 3 2133 2305 74079505 74079334 9.400000e-48 202.0
22 TraesCS2D01G490100 chr4B 89.610 154 16 0 2133 2286 106227562 106227409 4.380000e-46 196.0
23 TraesCS2D01G490100 chr3B 88.679 159 16 2 2130 2286 135687299 135687457 5.660000e-45 193.0
24 TraesCS2D01G490100 chr3B 88.125 160 19 0 2132 2291 528176344 528176185 2.040000e-44 191.0
25 TraesCS2D01G490100 chr3B 81.212 165 28 2 293 454 791862861 791863025 4.500000e-26 130.0
26 TraesCS2D01G490100 chr7B 88.608 158 17 1 2129 2286 505937470 505937314 2.040000e-44 191.0
27 TraesCS2D01G490100 chr6D 88.125 160 17 2 2129 2288 48676052 48675895 7.320000e-44 189.0
28 TraesCS2D01G490100 chr3A 82.547 212 33 3 293 503 26470381 26470173 3.410000e-42 183.0
29 TraesCS2D01G490100 chr5B 78.543 247 34 18 45 279 493161837 493162076 1.610000e-30 145.0
30 TraesCS2D01G490100 chr4A 76.250 160 32 6 365 521 303125578 303125422 4.600000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G490100 chr2D 588999796 589005331 5535 False 10224.000 10224 100.0000 1 5536 1 chr2D.!!$F1 5535
1 TraesCS2D01G490100 chr2A 723536047 723542563 6516 False 1556.525 4351 93.8450 557 4575 4 chr2A.!!$F3 4018
2 TraesCS2D01G490100 chr2A 520555689 520556407 718 False 822.000 822 87.4480 4816 5533 1 chr2A.!!$F1 717
3 TraesCS2D01G490100 chr2B 712615874 712620203 4329 False 1475.150 4290 88.5725 571 4813 4 chr2B.!!$F1 4242
4 TraesCS2D01G490100 chr7D 438683209 438683927 718 False 1033.000 1033 92.6490 4816 5533 1 chr7D.!!$F1 717
5 TraesCS2D01G490100 chr7D 599072684 599073396 712 True 1022.000 1022 92.4900 4819 5536 1 chr7D.!!$R1 717
6 TraesCS2D01G490100 chr7D 543385452 543386090 638 False 891.000 891 91.8750 4816 5453 1 chr7D.!!$F3 637
7 TraesCS2D01G490100 chr5D 169945313 169946030 717 True 994.000 994 91.6550 4819 5536 1 chr5D.!!$R1 717
8 TraesCS2D01G490100 chr3D 43267750 43268468 718 False 983.000 983 91.3770 4816 5533 1 chr3D.!!$F1 717
9 TraesCS2D01G490100 chr1D 12540324 12541039 715 False 976.000 976 91.3410 4813 5525 1 chr1D.!!$F1 712
10 TraesCS2D01G490100 chr5A 391776329 391777049 720 False 928.000 928 89.8890 4816 5536 1 chr5A.!!$F1 720
11 TraesCS2D01G490100 chr1A 294079860 294080572 712 True 902.000 902 89.4960 4819 5531 1 chr1A.!!$R1 712
12 TraesCS2D01G490100 chr7A 94488776 94490211 1435 True 612.000 612 74.6380 2347 3780 1 chr7A.!!$R1 1433

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.030235 CTGGACAACGACGTGACTGA 59.970 55.000 0.00 0.00 0.00 3.41 F
148 149 0.030235 TGGACAACGACGTGACTGAG 59.970 55.000 0.00 0.00 0.00 3.35 F
378 379 0.033228 TTGATGCAAACGGCCCAAAG 59.967 50.000 0.00 0.00 43.89 2.77 F
380 381 0.033366 GATGCAAACGGCCCAAAGTT 59.967 50.000 0.00 0.00 43.89 2.66 F
383 384 0.038618 GCAAACGGCCCAAAGTTAGG 60.039 55.000 0.00 0.00 36.11 2.69 F
434 435 0.041576 GACGTTTGTCCGTTTGCTCC 60.042 55.000 0.00 0.00 41.98 4.70 F
517 518 0.109723 TCGTGCCTTTAGTTGCCCTT 59.890 50.000 0.00 0.00 0.00 3.95 F
528 529 0.246360 GTTGCCCTTATGCACCAACC 59.754 55.000 0.00 0.00 41.88 3.77 F
531 532 0.614697 GCCCTTATGCACCAACCCTT 60.615 55.000 0.00 0.00 0.00 3.95 F
1010 3350 0.655337 CAATCGATCATGTTGCGCCG 60.655 55.000 4.18 0.00 0.00 6.46 F
1557 3922 0.878961 ACCGCCGACTGTTTTGTCTC 60.879 55.000 0.00 0.00 35.00 3.36 F
2192 4632 0.996462 CAACGTGTACTGCATACGGG 59.004 55.000 14.47 5.63 45.15 5.28 F
3374 5826 1.077663 AGAGGCAATTCATTGGGTGGT 59.922 47.619 1.77 0.00 38.21 4.16 F
4260 6889 1.006337 GAGAGGAGCTATGCAGGCG 60.006 63.158 8.47 0.00 34.52 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1057 3397 0.036388 ATCAAAAGCTCGCCGGAGAA 60.036 50.000 9.83 0.00 43.27 2.87 R
1536 3901 0.509929 GACAAAACAGTCGGCGGTAC 59.490 55.000 7.21 0.00 0.00 3.34 R
1543 3908 1.126846 GATGGCGAGACAAAACAGTCG 59.873 52.381 0.00 0.00 43.24 4.18 R
2014 4427 1.195448 CTTGTGCTTTAGCTCACCACG 59.805 52.381 6.03 0.00 43.16 4.94 R
2184 4624 1.331756 CACTCATTTCAGCCCGTATGC 59.668 52.381 0.00 0.00 0.00 3.14 R
2192 4632 4.500477 GTGTGTTTGTTCACTCATTTCAGC 59.500 41.667 0.00 0.00 38.90 4.26 R
2395 4838 4.553323 GAAGCTCTCCAAACAACGTACTA 58.447 43.478 0.00 0.00 0.00 1.82 R
2527 4973 5.196695 AGATTGTTATTGGAGAGGGAAAGC 58.803 41.667 0.00 0.00 0.00 3.51 R
2594 5040 4.094590 GCTTGAAAGATCCAGATGTGTCAG 59.905 45.833 0.00 0.00 31.08 3.51 R
2746 5198 4.082625 TCAACAGCTTCTAATGCATGTTGG 60.083 41.667 19.78 2.01 42.52 3.77 R
3380 5832 0.385390 GGTGGCATAATTTCAGCGGG 59.615 55.000 0.00 0.00 0.00 6.13 R
4247 6876 1.735920 CGGATCGCCTGCATAGCTC 60.736 63.158 7.22 0.00 0.00 4.09 R
4265 6894 0.179108 GTGGTGGTCCGCAGAGATAC 60.179 60.000 4.48 0.00 43.16 2.24 R
5083 7722 0.997363 GGGCAGGTTTAGTTAGGGGT 59.003 55.000 0.00 0.00 0.00 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.856000 AGAGGTGTTGCTGGGGCT 60.856 61.111 0.00 0.00 39.59 5.19
18 19 2.674380 GAGGTGTTGCTGGGGCTG 60.674 66.667 0.00 0.00 39.59 4.85
21 22 3.982241 GTGTTGCTGGGGCTGTGC 61.982 66.667 0.00 0.00 39.59 4.57
40 41 4.740822 GTCCGGTGCCTGGCCAAT 62.741 66.667 17.53 0.00 0.00 3.16
41 42 3.978193 TCCGGTGCCTGGCCAATT 61.978 61.111 17.53 0.00 0.00 2.32
42 43 3.451894 CCGGTGCCTGGCCAATTC 61.452 66.667 17.53 0.00 0.00 2.17
43 44 2.676121 CGGTGCCTGGCCAATTCA 60.676 61.111 17.53 1.46 0.00 2.57
44 45 2.053865 CGGTGCCTGGCCAATTCAT 61.054 57.895 17.53 0.00 0.00 2.57
45 46 1.518774 GGTGCCTGGCCAATTCATG 59.481 57.895 17.53 0.00 0.00 3.07
55 56 1.766494 CCAATTCATGGCTAGGCACA 58.234 50.000 22.77 8.49 43.80 4.57
56 57 1.679680 CCAATTCATGGCTAGGCACAG 59.320 52.381 22.77 16.96 43.80 3.66
57 58 1.066605 CAATTCATGGCTAGGCACAGC 59.933 52.381 22.77 2.74 41.02 4.40
91 92 3.361158 CCGCCGGATGCACACAAA 61.361 61.111 5.05 0.00 41.33 2.83
92 93 2.699768 CCGCCGGATGCACACAAAT 61.700 57.895 5.05 0.00 41.33 2.32
93 94 1.226379 CGCCGGATGCACACAAATC 60.226 57.895 5.05 0.00 41.33 2.17
94 95 1.882311 GCCGGATGCACACAAATCA 59.118 52.632 5.05 0.00 40.77 2.57
95 96 0.179156 GCCGGATGCACACAAATCAG 60.179 55.000 5.05 0.00 40.77 2.90
96 97 0.452987 CCGGATGCACACAAATCAGG 59.547 55.000 0.00 0.00 32.90 3.86
97 98 0.179156 CGGATGCACACAAATCAGGC 60.179 55.000 0.00 0.00 0.00 4.85
98 99 0.179156 GGATGCACACAAATCAGGCG 60.179 55.000 0.00 0.00 0.00 5.52
99 100 0.179156 GATGCACACAAATCAGGCGG 60.179 55.000 0.00 0.00 0.00 6.13
100 101 2.126346 GCACACAAATCAGGCGGC 60.126 61.111 0.00 0.00 0.00 6.53
101 102 2.568090 CACACAAATCAGGCGGCC 59.432 61.111 12.11 12.11 0.00 6.13
102 103 2.115052 ACACAAATCAGGCGGCCA 59.885 55.556 23.09 0.60 0.00 5.36
103 104 1.973281 ACACAAATCAGGCGGCCAG 60.973 57.895 23.09 14.25 0.00 4.85
104 105 1.675310 CACAAATCAGGCGGCCAGA 60.675 57.895 23.09 19.89 0.00 3.86
105 106 1.033746 CACAAATCAGGCGGCCAGAT 61.034 55.000 23.09 21.38 30.94 2.90
106 107 0.546122 ACAAATCAGGCGGCCAGATA 59.454 50.000 24.79 6.23 29.55 1.98
107 108 1.143684 ACAAATCAGGCGGCCAGATAT 59.856 47.619 24.79 13.48 29.55 1.63
108 109 1.538512 CAAATCAGGCGGCCAGATATG 59.461 52.381 24.79 12.61 29.55 1.78
109 110 0.607489 AATCAGGCGGCCAGATATGC 60.607 55.000 24.79 0.00 29.55 3.14
110 111 1.486997 ATCAGGCGGCCAGATATGCT 61.487 55.000 23.54 1.84 27.83 3.79
111 112 1.670406 CAGGCGGCCAGATATGCTC 60.670 63.158 23.09 0.00 0.00 4.26
112 113 2.142761 AGGCGGCCAGATATGCTCA 61.143 57.895 23.09 0.00 0.00 4.26
113 114 1.227943 GGCGGCCAGATATGCTCAA 60.228 57.895 15.62 0.00 0.00 3.02
114 115 0.819259 GGCGGCCAGATATGCTCAAA 60.819 55.000 15.62 0.00 0.00 2.69
115 116 1.242076 GCGGCCAGATATGCTCAAAT 58.758 50.000 2.24 0.00 0.00 2.32
116 117 1.198637 GCGGCCAGATATGCTCAAATC 59.801 52.381 2.24 0.00 0.00 2.17
117 118 1.808945 CGGCCAGATATGCTCAAATCC 59.191 52.381 2.24 0.00 0.00 3.01
118 119 1.808945 GGCCAGATATGCTCAAATCCG 59.191 52.381 0.00 0.00 0.00 4.18
119 120 1.808945 GCCAGATATGCTCAAATCCGG 59.191 52.381 0.00 0.00 0.00 5.14
120 121 1.808945 CCAGATATGCTCAAATCCGGC 59.191 52.381 0.00 0.00 0.00 6.13
121 122 1.462283 CAGATATGCTCAAATCCGGCG 59.538 52.381 0.00 0.00 0.00 6.46
122 123 0.798776 GATATGCTCAAATCCGGCGG 59.201 55.000 22.51 22.51 0.00 6.13
123 124 1.237285 ATATGCTCAAATCCGGCGGC 61.237 55.000 23.83 8.22 0.00 6.53
126 127 3.204827 CTCAAATCCGGCGGCCAG 61.205 66.667 23.83 8.08 0.00 4.85
127 128 4.794648 TCAAATCCGGCGGCCAGG 62.795 66.667 23.83 20.04 0.00 4.45
139 140 3.050275 GCCAGGCTGGACAACGAC 61.050 66.667 37.07 13.52 40.96 4.34
140 141 2.738521 CCAGGCTGGACAACGACG 60.739 66.667 29.96 0.00 40.96 5.12
141 142 2.029073 CAGGCTGGACAACGACGT 59.971 61.111 6.61 0.00 0.00 4.34
142 143 2.029073 AGGCTGGACAACGACGTG 59.971 61.111 0.00 0.00 0.00 4.49
143 144 2.028484 GGCTGGACAACGACGTGA 59.972 61.111 0.00 0.00 0.00 4.35
144 145 2.308039 GGCTGGACAACGACGTGAC 61.308 63.158 0.00 0.00 0.00 3.67
145 146 1.299926 GCTGGACAACGACGTGACT 60.300 57.895 0.00 0.00 0.00 3.41
146 147 1.548973 GCTGGACAACGACGTGACTG 61.549 60.000 0.00 0.00 0.00 3.51
147 148 0.030235 CTGGACAACGACGTGACTGA 59.970 55.000 0.00 0.00 0.00 3.41
148 149 0.030235 TGGACAACGACGTGACTGAG 59.970 55.000 0.00 0.00 0.00 3.35
149 150 0.309922 GGACAACGACGTGACTGAGA 59.690 55.000 0.00 0.00 0.00 3.27
150 151 1.396644 GACAACGACGTGACTGAGAC 58.603 55.000 0.00 0.00 0.00 3.36
151 152 0.736636 ACAACGACGTGACTGAGACA 59.263 50.000 0.00 0.00 0.00 3.41
152 153 1.133598 ACAACGACGTGACTGAGACAA 59.866 47.619 0.00 0.00 0.00 3.18
153 154 2.190161 CAACGACGTGACTGAGACAAA 58.810 47.619 0.00 0.00 0.00 2.83
154 155 2.121116 ACGACGTGACTGAGACAAAG 57.879 50.000 0.00 0.00 0.00 2.77
155 156 1.269102 ACGACGTGACTGAGACAAAGG 60.269 52.381 0.00 0.00 0.00 3.11
156 157 1.140816 GACGTGACTGAGACAAAGGC 58.859 55.000 0.00 0.00 0.00 4.35
157 158 0.249911 ACGTGACTGAGACAAAGGCC 60.250 55.000 0.00 0.00 0.00 5.19
158 159 0.034059 CGTGACTGAGACAAAGGCCT 59.966 55.000 0.00 0.00 0.00 5.19
159 160 1.517242 GTGACTGAGACAAAGGCCTG 58.483 55.000 5.69 0.00 0.00 4.85
160 161 0.397941 TGACTGAGACAAAGGCCTGG 59.602 55.000 5.69 4.15 0.00 4.45
161 162 0.322008 GACTGAGACAAAGGCCTGGG 60.322 60.000 5.69 3.69 0.00 4.45
162 163 1.001641 CTGAGACAAAGGCCTGGGG 60.002 63.158 5.69 0.53 0.00 4.96
163 164 2.356667 GAGACAAAGGCCTGGGGG 59.643 66.667 5.69 0.00 0.00 5.40
208 209 4.106925 GCTGGGCTGGACAGGGAG 62.107 72.222 1.01 0.00 36.48 4.30
209 210 3.406200 CTGGGCTGGACAGGGAGG 61.406 72.222 1.01 0.00 32.38 4.30
210 211 4.270153 TGGGCTGGACAGGGAGGT 62.270 66.667 1.01 0.00 0.00 3.85
211 212 3.721706 GGGCTGGACAGGGAGGTG 61.722 72.222 1.01 0.00 0.00 4.00
212 213 3.721706 GGCTGGACAGGGAGGTGG 61.722 72.222 1.01 0.00 0.00 4.61
213 214 4.416738 GCTGGACAGGGAGGTGGC 62.417 72.222 1.01 0.00 0.00 5.01
217 218 3.775654 GACAGGGAGGTGGCCGAG 61.776 72.222 0.00 0.00 0.00 4.63
218 219 4.316823 ACAGGGAGGTGGCCGAGA 62.317 66.667 0.00 0.00 0.00 4.04
219 220 3.003173 CAGGGAGGTGGCCGAGAA 61.003 66.667 0.00 0.00 0.00 2.87
220 221 2.203938 AGGGAGGTGGCCGAGAAA 60.204 61.111 0.00 0.00 0.00 2.52
221 222 1.846124 AGGGAGGTGGCCGAGAAAA 60.846 57.895 0.00 0.00 0.00 2.29
222 223 1.208165 AGGGAGGTGGCCGAGAAAAT 61.208 55.000 0.00 0.00 0.00 1.82
223 224 1.032114 GGGAGGTGGCCGAGAAAATG 61.032 60.000 0.00 0.00 0.00 2.32
224 225 1.032114 GGAGGTGGCCGAGAAAATGG 61.032 60.000 0.00 0.00 0.00 3.16
231 232 1.138247 CCGAGAAAATGGCAGCTGC 59.862 57.895 30.88 30.88 41.14 5.25
232 233 1.226211 CGAGAAAATGGCAGCTGCG 60.226 57.895 31.19 11.21 43.26 5.18
233 234 1.638388 CGAGAAAATGGCAGCTGCGA 61.638 55.000 31.19 28.73 43.26 5.10
234 235 0.179179 GAGAAAATGGCAGCTGCGAC 60.179 55.000 31.19 19.43 43.26 5.19
235 236 1.512734 GAAAATGGCAGCTGCGACG 60.513 57.895 31.19 0.00 43.26 5.12
236 237 1.911293 GAAAATGGCAGCTGCGACGA 61.911 55.000 31.19 15.86 43.26 4.20
237 238 1.308069 AAAATGGCAGCTGCGACGAT 61.308 50.000 31.19 17.36 43.26 3.73
238 239 1.985447 AAATGGCAGCTGCGACGATG 61.985 55.000 31.19 0.00 43.26 3.84
247 248 4.944372 GCGACGATGGCGGGGTAG 62.944 72.222 0.00 0.00 43.17 3.18
248 249 4.280494 CGACGATGGCGGGGTAGG 62.280 72.222 0.00 0.00 43.17 3.18
249 250 3.925090 GACGATGGCGGGGTAGGG 61.925 72.222 0.00 0.00 43.17 3.53
250 251 4.791069 ACGATGGCGGGGTAGGGT 62.791 66.667 0.00 0.00 43.17 4.34
251 252 3.476419 CGATGGCGGGGTAGGGTT 61.476 66.667 0.00 0.00 0.00 4.11
252 253 2.509422 GATGGCGGGGTAGGGTTC 59.491 66.667 0.00 0.00 0.00 3.62
253 254 2.285818 ATGGCGGGGTAGGGTTCA 60.286 61.111 0.00 0.00 0.00 3.18
254 255 2.325393 GATGGCGGGGTAGGGTTCAG 62.325 65.000 0.00 0.00 0.00 3.02
255 256 3.793888 GGCGGGGTAGGGTTCAGG 61.794 72.222 0.00 0.00 0.00 3.86
256 257 3.793888 GCGGGGTAGGGTTCAGGG 61.794 72.222 0.00 0.00 0.00 4.45
257 258 3.087906 CGGGGTAGGGTTCAGGGG 61.088 72.222 0.00 0.00 0.00 4.79
258 259 2.694992 GGGGTAGGGTTCAGGGGG 60.695 72.222 0.00 0.00 0.00 5.40
259 260 2.126603 GGGTAGGGTTCAGGGGGT 59.873 66.667 0.00 0.00 0.00 4.95
260 261 1.543134 GGGTAGGGTTCAGGGGGTT 60.543 63.158 0.00 0.00 0.00 4.11
261 262 1.144612 GGGTAGGGTTCAGGGGGTTT 61.145 60.000 0.00 0.00 0.00 3.27
262 263 0.781920 GGTAGGGTTCAGGGGGTTTT 59.218 55.000 0.00 0.00 0.00 2.43
263 264 1.549265 GGTAGGGTTCAGGGGGTTTTG 60.549 57.143 0.00 0.00 0.00 2.44
264 265 0.781278 TAGGGTTCAGGGGGTTTTGG 59.219 55.000 0.00 0.00 0.00 3.28
265 266 1.535444 GGGTTCAGGGGGTTTTGGG 60.535 63.158 0.00 0.00 0.00 4.12
266 267 1.535444 GGTTCAGGGGGTTTTGGGG 60.535 63.158 0.00 0.00 0.00 4.96
267 268 2.202899 TTCAGGGGGTTTTGGGGC 59.797 61.111 0.00 0.00 0.00 5.80
268 269 3.819016 TTCAGGGGGTTTTGGGGCG 62.819 63.158 0.00 0.00 0.00 6.13
282 283 4.360405 GGCGGCTGGGGGAGAAAA 62.360 66.667 0.00 0.00 0.00 2.29
283 284 2.282887 GCGGCTGGGGGAGAAAAA 60.283 61.111 0.00 0.00 0.00 1.94
284 285 2.343426 GCGGCTGGGGGAGAAAAAG 61.343 63.158 0.00 0.00 0.00 2.27
285 286 1.678970 CGGCTGGGGGAGAAAAAGG 60.679 63.158 0.00 0.00 0.00 3.11
286 287 1.305297 GGCTGGGGGAGAAAAAGGG 60.305 63.158 0.00 0.00 0.00 3.95
287 288 1.305297 GCTGGGGGAGAAAAAGGGG 60.305 63.158 0.00 0.00 0.00 4.79
288 289 1.305297 CTGGGGGAGAAAAAGGGGC 60.305 63.158 0.00 0.00 0.00 5.80
289 290 2.038975 GGGGGAGAAAAAGGGGCC 59.961 66.667 0.00 0.00 0.00 5.80
290 291 2.038975 GGGGAGAAAAAGGGGCCC 59.961 66.667 17.12 17.12 38.08 5.80
291 292 2.858655 GGGAGAAAAAGGGGCCCA 59.141 61.111 27.72 0.00 38.68 5.36
292 293 1.392131 GGGAGAAAAAGGGGCCCAT 59.608 57.895 27.72 16.07 38.68 4.00
293 294 0.977627 GGGAGAAAAAGGGGCCCATG 60.978 60.000 27.72 0.00 38.68 3.66
294 295 0.252239 GGAGAAAAAGGGGCCCATGT 60.252 55.000 27.72 9.51 0.00 3.21
295 296 0.897621 GAGAAAAAGGGGCCCATGTG 59.102 55.000 27.72 0.00 0.00 3.21
296 297 0.190815 AGAAAAAGGGGCCCATGTGT 59.809 50.000 27.72 6.54 0.00 3.72
297 298 0.608130 GAAAAAGGGGCCCATGTGTC 59.392 55.000 27.72 13.80 0.00 3.67
298 299 0.835971 AAAAAGGGGCCCATGTGTCC 60.836 55.000 27.72 3.49 0.00 4.02
299 300 2.746947 AAAAGGGGCCCATGTGTCCC 62.747 60.000 27.72 10.31 39.67 4.46
303 304 4.796495 GGCCCATGTGTCCCCGAC 62.796 72.222 0.00 0.00 0.00 4.79
305 306 4.467084 CCCATGTGTCCCCGACGG 62.467 72.222 6.99 6.99 34.95 4.79
322 323 3.862991 GGCGGGCTAGGGAAGGAC 61.863 72.222 0.00 0.00 0.00 3.85
323 324 3.081409 GCGGGCTAGGGAAGGACA 61.081 66.667 0.00 0.00 0.00 4.02
324 325 2.901042 CGGGCTAGGGAAGGACAC 59.099 66.667 0.00 0.00 0.00 3.67
325 326 2.901042 GGGCTAGGGAAGGACACG 59.099 66.667 0.00 0.00 0.00 4.49
326 327 1.988406 GGGCTAGGGAAGGACACGT 60.988 63.158 0.00 0.00 0.00 4.49
327 328 1.218316 GGCTAGGGAAGGACACGTG 59.782 63.158 15.48 15.48 0.00 4.49
328 329 1.448013 GCTAGGGAAGGACACGTGC 60.448 63.158 17.22 8.51 0.00 5.34
329 330 1.972198 CTAGGGAAGGACACGTGCA 59.028 57.895 17.22 0.00 0.00 4.57
330 331 0.389948 CTAGGGAAGGACACGTGCAC 60.390 60.000 17.22 6.82 0.00 4.57
331 332 2.149803 TAGGGAAGGACACGTGCACG 62.150 60.000 35.99 35.99 46.33 5.34
332 333 3.712881 GGAAGGACACGTGCACGC 61.713 66.667 37.35 21.80 44.43 5.34
333 334 4.059459 GAAGGACACGTGCACGCG 62.059 66.667 37.35 30.94 44.43 6.01
334 335 4.884257 AAGGACACGTGCACGCGT 62.884 61.111 37.35 34.11 46.88 6.01
356 357 4.680237 CCTGTCCGCGCTTGTCCA 62.680 66.667 5.56 0.00 0.00 4.02
357 358 2.434884 CTGTCCGCGCTTGTCCAT 60.435 61.111 5.56 0.00 0.00 3.41
358 359 2.031919 TGTCCGCGCTTGTCCATT 59.968 55.556 5.56 0.00 0.00 3.16
359 360 1.577328 CTGTCCGCGCTTGTCCATTT 61.577 55.000 5.56 0.00 0.00 2.32
360 361 1.169661 TGTCCGCGCTTGTCCATTTT 61.170 50.000 5.56 0.00 0.00 1.82
361 362 0.729140 GTCCGCGCTTGTCCATTTTG 60.729 55.000 5.56 0.00 0.00 2.44
362 363 0.886938 TCCGCGCTTGTCCATTTTGA 60.887 50.000 5.56 0.00 0.00 2.69
363 364 0.171007 CCGCGCTTGTCCATTTTGAT 59.829 50.000 5.56 0.00 0.00 2.57
364 365 1.261989 CGCGCTTGTCCATTTTGATG 58.738 50.000 5.56 0.00 0.00 3.07
365 366 0.994263 GCGCTTGTCCATTTTGATGC 59.006 50.000 0.00 0.00 0.00 3.91
366 367 1.669502 GCGCTTGTCCATTTTGATGCA 60.670 47.619 0.00 0.00 0.00 3.96
367 368 2.674954 CGCTTGTCCATTTTGATGCAA 58.325 42.857 0.00 0.00 0.00 4.08
368 369 3.058450 CGCTTGTCCATTTTGATGCAAA 58.942 40.909 0.00 0.00 0.00 3.68
369 370 3.120923 CGCTTGTCCATTTTGATGCAAAC 60.121 43.478 0.00 0.00 32.79 2.93
370 371 3.120923 GCTTGTCCATTTTGATGCAAACG 60.121 43.478 0.00 0.00 32.79 3.60
371 372 3.023946 TGTCCATTTTGATGCAAACGG 57.976 42.857 0.00 0.00 32.79 4.44
372 373 1.726248 GTCCATTTTGATGCAAACGGC 59.274 47.619 0.00 0.00 45.13 5.68
373 374 1.077915 CCATTTTGATGCAAACGGCC 58.922 50.000 0.00 0.00 43.89 6.13
374 375 1.077915 CATTTTGATGCAAACGGCCC 58.922 50.000 0.00 0.00 43.89 5.80
375 376 0.683973 ATTTTGATGCAAACGGCCCA 59.316 45.000 0.00 0.00 43.89 5.36
376 377 0.465705 TTTTGATGCAAACGGCCCAA 59.534 45.000 0.00 0.00 43.89 4.12
377 378 0.465705 TTTGATGCAAACGGCCCAAA 59.534 45.000 0.00 0.00 43.89 3.28
378 379 0.033228 TTGATGCAAACGGCCCAAAG 59.967 50.000 0.00 0.00 43.89 2.77
379 380 1.112315 TGATGCAAACGGCCCAAAGT 61.112 50.000 0.00 0.00 43.89 2.66
380 381 0.033366 GATGCAAACGGCCCAAAGTT 59.967 50.000 0.00 0.00 43.89 2.66
381 382 1.271102 GATGCAAACGGCCCAAAGTTA 59.729 47.619 0.00 0.00 43.89 2.24
382 383 0.671251 TGCAAACGGCCCAAAGTTAG 59.329 50.000 0.00 0.00 43.89 2.34
383 384 0.038618 GCAAACGGCCCAAAGTTAGG 60.039 55.000 0.00 0.00 36.11 2.69
388 389 4.018409 GCCCAAAGTTAGGCCAGG 57.982 61.111 5.01 0.00 43.76 4.45
389 390 1.382629 GCCCAAAGTTAGGCCAGGA 59.617 57.895 5.01 0.00 43.76 3.86
390 391 0.251608 GCCCAAAGTTAGGCCAGGAA 60.252 55.000 5.01 0.00 43.76 3.36
391 392 1.619704 GCCCAAAGTTAGGCCAGGAAT 60.620 52.381 5.01 0.00 43.76 3.01
392 393 2.357777 GCCCAAAGTTAGGCCAGGAATA 60.358 50.000 5.01 0.00 43.76 1.75
393 394 3.555966 CCCAAAGTTAGGCCAGGAATAG 58.444 50.000 5.01 0.00 0.00 1.73
394 395 3.555966 CCAAAGTTAGGCCAGGAATAGG 58.444 50.000 5.01 0.00 0.00 2.57
395 396 3.053619 CCAAAGTTAGGCCAGGAATAGGT 60.054 47.826 5.01 0.00 0.00 3.08
396 397 4.200092 CAAAGTTAGGCCAGGAATAGGTC 58.800 47.826 5.01 0.00 0.00 3.85
397 398 2.040178 AGTTAGGCCAGGAATAGGTCG 58.960 52.381 5.01 0.00 35.42 4.79
398 399 2.037144 GTTAGGCCAGGAATAGGTCGA 58.963 52.381 5.01 0.00 35.42 4.20
399 400 2.633481 GTTAGGCCAGGAATAGGTCGAT 59.367 50.000 5.01 0.00 35.42 3.59
400 401 2.696526 AGGCCAGGAATAGGTCGATA 57.303 50.000 5.01 0.00 35.42 2.92
401 402 2.530701 AGGCCAGGAATAGGTCGATAG 58.469 52.381 5.01 0.00 35.42 2.08
402 403 1.066787 GGCCAGGAATAGGTCGATAGC 60.067 57.143 0.00 0.00 0.00 2.97
403 404 1.402984 GCCAGGAATAGGTCGATAGCG 60.403 57.143 0.00 0.00 39.35 4.26
404 405 1.202582 CCAGGAATAGGTCGATAGCGG 59.797 57.143 0.00 0.00 38.28 5.52
405 406 2.160205 CAGGAATAGGTCGATAGCGGA 58.840 52.381 0.00 0.00 38.28 5.54
406 407 2.095161 CAGGAATAGGTCGATAGCGGAC 60.095 54.545 0.00 0.00 38.28 4.79
407 408 1.135746 GGAATAGGTCGATAGCGGACG 60.136 57.143 0.00 0.00 38.28 4.79
408 409 1.802960 GAATAGGTCGATAGCGGACGA 59.197 52.381 0.00 0.00 38.28 4.20
409 410 1.888215 ATAGGTCGATAGCGGACGAA 58.112 50.000 0.00 0.00 40.12 3.85
410 411 1.667236 TAGGTCGATAGCGGACGAAA 58.333 50.000 0.00 0.00 40.12 3.46
411 412 0.813184 AGGTCGATAGCGGACGAAAA 59.187 50.000 0.00 0.00 40.12 2.29
412 413 1.203052 AGGTCGATAGCGGACGAAAAA 59.797 47.619 0.00 0.00 40.12 1.94
413 414 1.322637 GGTCGATAGCGGACGAAAAAC 59.677 52.381 0.00 0.00 40.12 2.43
414 415 1.322637 GTCGATAGCGGACGAAAAACC 59.677 52.381 0.00 0.00 40.12 3.27
422 423 1.733706 GGACGAAAAACCGACGTTTG 58.266 50.000 0.00 0.00 41.42 2.93
423 424 1.062440 GGACGAAAAACCGACGTTTGT 59.938 47.619 0.00 0.00 41.42 2.83
424 425 2.356892 GACGAAAAACCGACGTTTGTC 58.643 47.619 0.00 0.00 41.42 3.18
425 426 1.062440 ACGAAAAACCGACGTTTGTCC 59.938 47.619 0.00 0.00 41.45 4.02
426 427 1.733706 GAAAAACCGACGTTTGTCCG 58.266 50.000 0.00 0.00 41.42 4.79
427 428 1.062440 GAAAAACCGACGTTTGTCCGT 59.938 47.619 0.00 0.00 41.42 4.69
428 429 1.085893 AAAACCGACGTTTGTCCGTT 58.914 45.000 0.00 0.00 44.72 4.44
429 430 1.085893 AAACCGACGTTTGTCCGTTT 58.914 45.000 8.40 8.40 45.43 3.60
430 431 0.374410 AACCGACGTTTGTCCGTTTG 59.626 50.000 0.00 0.00 41.66 2.93
431 432 1.368374 CCGACGTTTGTCCGTTTGC 60.368 57.895 0.00 0.00 41.98 3.68
432 433 1.639534 CGACGTTTGTCCGTTTGCT 59.360 52.632 0.00 0.00 41.98 3.91
433 434 0.382636 CGACGTTTGTCCGTTTGCTC 60.383 55.000 0.00 0.00 41.98 4.26
434 435 0.041576 GACGTTTGTCCGTTTGCTCC 60.042 55.000 0.00 0.00 41.98 4.70
435 436 1.281656 CGTTTGTCCGTTTGCTCCC 59.718 57.895 0.00 0.00 0.00 4.30
436 437 1.281656 GTTTGTCCGTTTGCTCCCG 59.718 57.895 0.00 0.00 0.00 5.14
437 438 2.548295 TTTGTCCGTTTGCTCCCGC 61.548 57.895 0.00 0.00 0.00 6.13
442 443 3.645975 CGTTTGCTCCCGCGTGTT 61.646 61.111 4.92 0.00 39.65 3.32
443 444 2.051345 GTTTGCTCCCGCGTGTTG 60.051 61.111 4.92 0.00 39.65 3.33
444 445 3.283684 TTTGCTCCCGCGTGTTGG 61.284 61.111 4.92 0.00 39.65 3.77
454 455 2.338257 CGTGTTGGGCCGCATTTT 59.662 55.556 0.00 0.00 0.00 1.82
455 456 2.021039 CGTGTTGGGCCGCATTTTG 61.021 57.895 0.00 0.00 0.00 2.44
456 457 1.068921 GTGTTGGGCCGCATTTTGT 59.931 52.632 0.00 0.00 0.00 2.83
457 458 0.315568 GTGTTGGGCCGCATTTTGTA 59.684 50.000 0.00 0.00 0.00 2.41
458 459 1.067213 GTGTTGGGCCGCATTTTGTAT 60.067 47.619 0.00 0.00 0.00 2.29
459 460 1.203523 TGTTGGGCCGCATTTTGTATC 59.796 47.619 0.00 0.00 0.00 2.24
460 461 1.476488 GTTGGGCCGCATTTTGTATCT 59.524 47.619 0.00 0.00 0.00 1.98
461 462 2.685897 GTTGGGCCGCATTTTGTATCTA 59.314 45.455 0.00 0.00 0.00 1.98
462 463 3.222173 TGGGCCGCATTTTGTATCTAT 57.778 42.857 0.00 0.00 0.00 1.98
463 464 3.561143 TGGGCCGCATTTTGTATCTATT 58.439 40.909 0.00 0.00 0.00 1.73
464 465 3.957497 TGGGCCGCATTTTGTATCTATTT 59.043 39.130 0.00 0.00 0.00 1.40
465 466 5.133941 TGGGCCGCATTTTGTATCTATTTA 58.866 37.500 0.00 0.00 0.00 1.40
466 467 5.009210 TGGGCCGCATTTTGTATCTATTTAC 59.991 40.000 0.00 0.00 0.00 2.01
467 468 5.458015 GGCCGCATTTTGTATCTATTTACC 58.542 41.667 0.00 0.00 0.00 2.85
468 469 5.240844 GGCCGCATTTTGTATCTATTTACCT 59.759 40.000 0.00 0.00 0.00 3.08
469 470 6.371389 GCCGCATTTTGTATCTATTTACCTC 58.629 40.000 0.00 0.00 0.00 3.85
470 471 6.567891 GCCGCATTTTGTATCTATTTACCTCC 60.568 42.308 0.00 0.00 0.00 4.30
471 472 6.485313 CCGCATTTTGTATCTATTTACCTCCA 59.515 38.462 0.00 0.00 0.00 3.86
472 473 7.012894 CCGCATTTTGTATCTATTTACCTCCAA 59.987 37.037 0.00 0.00 0.00 3.53
473 474 8.402472 CGCATTTTGTATCTATTTACCTCCAAA 58.598 33.333 0.00 0.00 0.00 3.28
474 475 9.516314 GCATTTTGTATCTATTTACCTCCAAAC 57.484 33.333 0.00 0.00 0.00 2.93
480 481 9.880157 TGTATCTATTTACCTCCAAACTAACAC 57.120 33.333 0.00 0.00 0.00 3.32
481 482 9.028185 GTATCTATTTACCTCCAAACTAACACG 57.972 37.037 0.00 0.00 0.00 4.49
482 483 6.400568 TCTATTTACCTCCAAACTAACACGG 58.599 40.000 0.00 0.00 0.00 4.94
483 484 2.460757 TACCTCCAAACTAACACGGC 57.539 50.000 0.00 0.00 0.00 5.68
484 485 0.250597 ACCTCCAAACTAACACGGCC 60.251 55.000 0.00 0.00 0.00 6.13
485 486 0.250553 CCTCCAAACTAACACGGCCA 60.251 55.000 2.24 0.00 0.00 5.36
486 487 1.156736 CTCCAAACTAACACGGCCAG 58.843 55.000 2.24 0.00 0.00 4.85
487 488 0.759959 TCCAAACTAACACGGCCAGA 59.240 50.000 2.24 0.00 0.00 3.86
488 489 0.872388 CCAAACTAACACGGCCAGAC 59.128 55.000 2.24 0.00 0.00 3.51
489 490 0.872388 CAAACTAACACGGCCAGACC 59.128 55.000 2.24 0.00 0.00 3.85
490 491 0.470766 AAACTAACACGGCCAGACCA 59.529 50.000 2.24 0.00 39.03 4.02
491 492 0.690762 AACTAACACGGCCAGACCAT 59.309 50.000 2.24 0.00 39.03 3.55
492 493 0.690762 ACTAACACGGCCAGACCATT 59.309 50.000 2.24 0.00 39.03 3.16
493 494 1.073284 ACTAACACGGCCAGACCATTT 59.927 47.619 2.24 0.00 39.03 2.32
494 495 1.468520 CTAACACGGCCAGACCATTTG 59.531 52.381 2.24 0.00 39.03 2.32
495 496 1.178534 AACACGGCCAGACCATTTGG 61.179 55.000 2.24 0.00 39.03 3.28
496 497 2.035626 ACGGCCAGACCATTTGGG 59.964 61.111 2.24 0.00 44.81 4.12
497 498 2.755469 CGGCCAGACCATTTGGGG 60.755 66.667 2.24 0.00 42.91 4.96
498 499 2.445155 GGCCAGACCATTTGGGGT 59.555 61.111 0.00 0.00 46.02 4.95
504 505 2.282887 ACCATTTGGGGTCGTGCC 60.283 61.111 0.96 0.00 42.91 5.01
505 506 2.035626 CCATTTGGGGTCGTGCCT 59.964 61.111 0.00 0.00 37.43 4.75
506 507 1.606313 CCATTTGGGGTCGTGCCTT 60.606 57.895 0.00 0.00 37.43 4.35
507 508 1.184970 CCATTTGGGGTCGTGCCTTT 61.185 55.000 0.00 0.00 37.43 3.11
508 509 1.540267 CATTTGGGGTCGTGCCTTTA 58.460 50.000 0.00 0.00 37.43 1.85
509 510 1.472480 CATTTGGGGTCGTGCCTTTAG 59.528 52.381 0.00 0.00 37.43 1.85
510 511 0.475044 TTTGGGGTCGTGCCTTTAGT 59.525 50.000 0.00 0.00 37.43 2.24
511 512 0.475044 TTGGGGTCGTGCCTTTAGTT 59.525 50.000 0.00 0.00 37.43 2.24
512 513 0.250553 TGGGGTCGTGCCTTTAGTTG 60.251 55.000 0.00 0.00 37.43 3.16
513 514 1.583495 GGGGTCGTGCCTTTAGTTGC 61.583 60.000 0.00 0.00 37.43 4.17
514 515 1.583495 GGGTCGTGCCTTTAGTTGCC 61.583 60.000 0.00 0.00 37.43 4.52
515 516 1.583495 GGTCGTGCCTTTAGTTGCCC 61.583 60.000 0.00 0.00 0.00 5.36
516 517 0.605589 GTCGTGCCTTTAGTTGCCCT 60.606 55.000 0.00 0.00 0.00 5.19
517 518 0.109723 TCGTGCCTTTAGTTGCCCTT 59.890 50.000 0.00 0.00 0.00 3.95
518 519 1.348366 TCGTGCCTTTAGTTGCCCTTA 59.652 47.619 0.00 0.00 0.00 2.69
519 520 2.026636 TCGTGCCTTTAGTTGCCCTTAT 60.027 45.455 0.00 0.00 0.00 1.73
520 521 2.097466 CGTGCCTTTAGTTGCCCTTATG 59.903 50.000 0.00 0.00 0.00 1.90
521 522 2.099405 TGCCTTTAGTTGCCCTTATGC 58.901 47.619 0.00 0.00 0.00 3.14
522 523 2.099405 GCCTTTAGTTGCCCTTATGCA 58.901 47.619 0.00 0.00 40.07 3.96
523 524 2.159240 GCCTTTAGTTGCCCTTATGCAC 60.159 50.000 0.00 0.00 41.88 4.57
524 525 2.427095 CCTTTAGTTGCCCTTATGCACC 59.573 50.000 0.00 0.00 41.88 5.01
525 526 2.889170 TTAGTTGCCCTTATGCACCA 57.111 45.000 0.00 0.00 41.88 4.17
526 527 2.889170 TAGTTGCCCTTATGCACCAA 57.111 45.000 0.00 0.00 41.88 3.67
527 528 1.256812 AGTTGCCCTTATGCACCAAC 58.743 50.000 0.00 0.00 41.88 3.77
528 529 0.246360 GTTGCCCTTATGCACCAACC 59.754 55.000 0.00 0.00 41.88 3.77
529 530 0.902516 TTGCCCTTATGCACCAACCC 60.903 55.000 0.00 0.00 41.88 4.11
530 531 1.000359 GCCCTTATGCACCAACCCT 60.000 57.895 0.00 0.00 0.00 4.34
531 532 0.614697 GCCCTTATGCACCAACCCTT 60.615 55.000 0.00 0.00 0.00 3.95
532 533 1.937191 CCCTTATGCACCAACCCTTT 58.063 50.000 0.00 0.00 0.00 3.11
533 534 2.256306 CCCTTATGCACCAACCCTTTT 58.744 47.619 0.00 0.00 0.00 2.27
534 535 2.637382 CCCTTATGCACCAACCCTTTTT 59.363 45.455 0.00 0.00 0.00 1.94
535 536 3.556843 CCCTTATGCACCAACCCTTTTTG 60.557 47.826 0.00 0.00 0.00 2.44
536 537 3.323403 CCTTATGCACCAACCCTTTTTGA 59.677 43.478 0.00 0.00 0.00 2.69
537 538 4.202305 CCTTATGCACCAACCCTTTTTGAA 60.202 41.667 0.00 0.00 0.00 2.69
538 539 3.922171 ATGCACCAACCCTTTTTGAAA 57.078 38.095 0.00 0.00 0.00 2.69
539 540 3.703001 TGCACCAACCCTTTTTGAAAA 57.297 38.095 0.00 0.00 0.00 2.29
540 541 4.227864 TGCACCAACCCTTTTTGAAAAT 57.772 36.364 0.00 0.00 0.00 1.82
541 542 3.944015 TGCACCAACCCTTTTTGAAAATG 59.056 39.130 0.00 0.00 0.00 2.32
542 543 3.944650 GCACCAACCCTTTTTGAAAATGT 59.055 39.130 0.00 0.00 0.00 2.71
543 544 4.035091 GCACCAACCCTTTTTGAAAATGTC 59.965 41.667 0.00 0.00 0.00 3.06
544 545 5.181748 CACCAACCCTTTTTGAAAATGTCA 58.818 37.500 0.00 0.00 0.00 3.58
545 546 5.064579 CACCAACCCTTTTTGAAAATGTCAC 59.935 40.000 0.00 0.00 35.39 3.67
546 547 5.181748 CCAACCCTTTTTGAAAATGTCACA 58.818 37.500 0.00 0.00 35.39 3.58
547 548 5.821995 CCAACCCTTTTTGAAAATGTCACAT 59.178 36.000 0.00 0.00 35.39 3.21
548 549 6.018016 CCAACCCTTTTTGAAAATGTCACATC 60.018 38.462 0.00 0.00 35.39 3.06
549 550 6.232581 ACCCTTTTTGAAAATGTCACATCA 57.767 33.333 0.00 0.00 35.39 3.07
550 551 6.282930 ACCCTTTTTGAAAATGTCACATCAG 58.717 36.000 0.00 0.00 35.39 2.90
551 552 6.098124 ACCCTTTTTGAAAATGTCACATCAGA 59.902 34.615 0.00 0.00 35.39 3.27
552 553 7.156673 CCCTTTTTGAAAATGTCACATCAGAT 58.843 34.615 0.00 0.00 35.39 2.90
553 554 7.117236 CCCTTTTTGAAAATGTCACATCAGATG 59.883 37.037 9.03 9.03 35.39 2.90
554 555 7.868922 CCTTTTTGAAAATGTCACATCAGATGA 59.131 33.333 17.81 0.00 35.39 2.92
555 556 8.578308 TTTTTGAAAATGTCACATCAGATGAC 57.422 30.769 17.81 7.29 45.58 3.06
618 688 6.537355 TGTGAGATTTTCAGATCCTTGACTT 58.463 36.000 0.00 0.00 36.21 3.01
640 710 0.759959 TGTCAACGTTCTTGCCCCTA 59.240 50.000 0.00 0.00 0.00 3.53
698 768 6.424207 ACAGTTAAAACAGATCGAGAAAGGAC 59.576 38.462 0.00 0.00 0.00 3.85
699 769 5.634020 AGTTAAAACAGATCGAGAAAGGACG 59.366 40.000 0.00 0.00 0.00 4.79
702 772 1.202582 ACAGATCGAGAAAGGACGTGG 59.797 52.381 0.00 0.00 0.00 4.94
741 836 7.490962 TTTTGGAAAGGTCGCATATATACAG 57.509 36.000 0.00 0.00 0.00 2.74
816 3129 4.940046 GCTGTGAGATTTTCTGATCCTTGA 59.060 41.667 0.00 0.00 0.00 3.02
846 3159 1.326951 ACGTTTTTGCCCCTGCTGTT 61.327 50.000 0.00 0.00 38.71 3.16
996 3336 2.662006 TCTCTGCTGAACCTCAATCG 57.338 50.000 0.00 0.00 0.00 3.34
1010 3350 0.655337 CAATCGATCATGTTGCGCCG 60.655 55.000 4.18 0.00 0.00 6.46
1168 3508 2.573869 CGCACATCGACTGGGACT 59.426 61.111 3.53 0.00 41.67 3.85
1187 3527 2.603776 GTCGGACTGGGACTGGGT 60.604 66.667 0.00 0.00 0.00 4.51
1205 3551 1.073025 TTGACGGACATTGCTGCCT 59.927 52.632 0.00 0.00 0.00 4.75
1287 3633 1.895231 AAACGTTCCTTCCCCGTGC 60.895 57.895 0.00 0.00 34.62 5.34
1317 3663 3.118738 ACGCTACTATGTTCCTTCCCTTG 60.119 47.826 0.00 0.00 0.00 3.61
1323 3669 2.276732 TGTTCCTTCCCTTGCAAGAG 57.723 50.000 28.05 15.54 0.00 2.85
1342 3688 2.930019 TGCAGACCCTGTCCCTGG 60.930 66.667 0.00 0.00 33.43 4.45
1353 3699 4.846940 ACCCTGTCCCTGGATCTAAATATC 59.153 45.833 0.00 0.00 0.00 1.63
1536 3901 7.861872 GGCTATCCTAGTTTCTTTAGTTCTACG 59.138 40.741 0.00 0.00 0.00 3.51
1543 3908 3.764885 TCTTTAGTTCTACGTACCGCC 57.235 47.619 0.00 0.00 0.00 6.13
1557 3922 0.878961 ACCGCCGACTGTTTTGTCTC 60.879 55.000 0.00 0.00 35.00 3.36
1570 3935 2.949451 TTGTCTCGCCATCTCTTCTC 57.051 50.000 0.00 0.00 0.00 2.87
1645 4027 2.288091 TGATGTGTGGTCAAAATTGCGG 60.288 45.455 0.00 0.00 0.00 5.69
1649 4031 2.538037 GTGTGGTCAAAATTGCGGAAAC 59.462 45.455 0.00 0.00 0.00 2.78
1653 4035 4.443063 GTGGTCAAAATTGCGGAAACTAAC 59.557 41.667 0.00 0.00 0.00 2.34
1667 4049 5.292101 CGGAAACTAACAAGCCTTGATCTAG 59.708 44.000 12.25 10.64 0.00 2.43
1697 4079 9.757227 GAAATATCTTAAGTGACTACAGCATCT 57.243 33.333 1.63 0.00 0.00 2.90
1734 4116 2.048503 GTCACTACGGCGCCTGTT 60.049 61.111 26.68 11.26 0.00 3.16
1763 4145 1.075374 CAAATGACTTGACCTCCCCCA 59.925 52.381 0.00 0.00 37.17 4.96
1782 4164 2.125512 GGCGATCCAACGTGAGCT 60.126 61.111 0.00 0.00 35.59 4.09
1783 4165 1.741770 GGCGATCCAACGTGAGCTT 60.742 57.895 0.00 0.00 35.59 3.74
1809 4191 5.713389 TCGTAGTTCTCCACTCTTTATTCCA 59.287 40.000 0.00 0.00 36.88 3.53
1810 4192 6.209986 TCGTAGTTCTCCACTCTTTATTCCAA 59.790 38.462 0.00 0.00 36.88 3.53
1811 4193 6.872020 CGTAGTTCTCCACTCTTTATTCCAAA 59.128 38.462 0.00 0.00 36.88 3.28
1919 4332 5.023533 TGAGTACAATGAAGCTGGATACC 57.976 43.478 0.00 0.00 0.00 2.73
1973 4386 5.948842 ACCTTACCAACAGGTGACTATTTT 58.051 37.500 0.00 0.00 43.52 1.82
2138 4578 7.068348 TCCTACTTGTATGAACATGACTACTCC 59.932 40.741 0.00 0.00 34.97 3.85
2148 4588 2.119801 TGACTACTCCCTCCGTACAC 57.880 55.000 0.00 0.00 0.00 2.90
2184 4624 7.356540 TGTTTTGGATATTTCAACGTGTACTG 58.643 34.615 0.00 0.00 0.00 2.74
2192 4632 0.996462 CAACGTGTACTGCATACGGG 59.004 55.000 14.47 5.63 45.15 5.28
2225 4665 4.029750 GTGAACAAACACACTAAAACGTGC 59.970 41.667 0.00 0.00 40.11 5.34
2244 4684 7.658179 ACGTGCCTATATACATTTGATTCAG 57.342 36.000 0.00 0.00 0.00 3.02
2594 5040 3.211045 TCCTTGTCAAACAGTAGCCAAC 58.789 45.455 0.00 0.00 0.00 3.77
2659 5111 3.631686 TGGAAACTGTGACTCCAACAATG 59.368 43.478 4.54 0.00 36.30 2.82
2687 5139 1.483827 CAGCTCAGCTCCAGGTTATGA 59.516 52.381 0.00 0.00 36.40 2.15
2717 5169 7.538303 CCAAATTGTAACCTTAATGGCAATC 57.462 36.000 0.00 0.00 40.22 2.67
2746 5198 7.739043 GCCGTTATATTAAGTTTCTTATCGCAC 59.261 37.037 0.00 0.00 0.00 5.34
2873 5325 2.814336 GGCAACTCCTTTAGTGGAAGTG 59.186 50.000 0.00 0.00 38.88 3.16
2897 5349 4.566004 TCTTCTTCCATCCAAAGTACACG 58.434 43.478 0.00 0.00 0.00 4.49
3094 5546 8.561738 ACAACAATTTCTCCGATAACATAGTT 57.438 30.769 0.00 0.00 0.00 2.24
3095 5547 9.010029 ACAACAATTTCTCCGATAACATAGTTT 57.990 29.630 0.00 0.00 0.00 2.66
3302 5754 3.838244 AGCAGTAACAAGTTGACTGGA 57.162 42.857 20.38 0.00 40.78 3.86
3374 5826 1.077663 AGAGGCAATTCATTGGGTGGT 59.922 47.619 1.77 0.00 38.21 4.16
3380 5832 3.734902 GCAATTCATTGGGTGGTTCGATC 60.735 47.826 1.77 0.00 38.21 3.69
3775 6404 6.837312 TGGGGTTAGATGGTGATTTGTATAG 58.163 40.000 0.00 0.00 0.00 1.31
3826 6455 7.619965 TCAGTAGTAATGAATCACACCAATGA 58.380 34.615 0.00 0.00 0.00 2.57
3853 6482 5.577100 TGATATTGGGAGCGTAGTAGGTAT 58.423 41.667 0.00 0.00 0.00 2.73
3963 6592 3.675225 CAGTTACATGTCTGGACTTGACG 59.325 47.826 18.90 0.00 39.09 4.35
4260 6889 1.006337 GAGAGGAGCTATGCAGGCG 60.006 63.158 8.47 0.00 34.52 5.52
4265 6894 1.735920 GAGCTATGCAGGCGATCCG 60.736 63.158 8.47 0.00 37.47 4.18
4318 6947 2.002586 CTTTGATGCACCGTCGATTCT 58.997 47.619 0.00 0.00 0.00 2.40
4358 6987 7.377766 TGAAGATGATAGTAAACTTGCCAAC 57.622 36.000 0.00 0.00 0.00 3.77
4439 7068 6.545666 TGGTTGTGCTTTATTTCAAGAGAAGA 59.454 34.615 0.00 0.00 34.71 2.87
4662 7292 9.244292 TGTTTGCTAATATATGGGTACACAAAA 57.756 29.630 0.00 0.00 0.00 2.44
4699 7330 4.761739 TGACTGCTTCTACAAAAGGAATGG 59.238 41.667 0.00 0.00 0.00 3.16
4711 7342 4.563140 AAAGGAATGGCAAGCATTCAAT 57.437 36.364 13.83 2.36 39.95 2.57
4716 7347 7.364149 AGGAATGGCAAGCATTCAATAATTA 57.636 32.000 13.83 0.00 39.95 1.40
4741 7372 6.981762 TTACTTCAAGACCGTTGTTGTTAA 57.018 33.333 0.00 0.00 0.00 2.01
4748 7379 5.352643 AGACCGTTGTTGTTAAATAGCAC 57.647 39.130 0.00 0.00 0.00 4.40
4751 7382 3.484683 CGTTGTTGTTAAATAGCACCCG 58.515 45.455 0.00 0.00 0.00 5.28
4790 7421 7.616313 TCTCTATTTCTTTCCTGGTCTTTCTC 58.384 38.462 0.00 0.00 0.00 2.87
4807 7438 8.973378 GGTCTTTCTCGTGATAATCTGAAATAG 58.027 37.037 0.00 0.00 0.00 1.73
4813 7444 9.083422 TCTCGTGATAATCTGAAATAGGAATCT 57.917 33.333 0.00 0.00 0.00 2.40
4865 7496 2.181975 CGTAGGTTGTAGGGGAAGGAA 58.818 52.381 0.00 0.00 0.00 3.36
5079 7718 7.558444 TGGAAATAAAATAGATAACTTGCGGGT 59.442 33.333 0.00 0.00 0.00 5.28
5142 7782 0.108329 AAGTCTGCCCGGTCATAACG 60.108 55.000 0.00 0.00 0.00 3.18
5155 7796 0.174845 CATAACGTCTCTCCCCGCAA 59.825 55.000 0.00 0.00 0.00 4.85
5169 7810 2.332514 GCAAGCGCAAACAGCTCA 59.667 55.556 11.47 0.00 45.31 4.26
5188 7829 2.092375 TCATCCTCGAGCTGGAAGTCTA 60.092 50.000 6.99 0.00 37.13 2.59
5274 7916 3.181469 ACTGAATGAACACGTACCACACT 60.181 43.478 0.00 0.00 0.00 3.55
5315 7957 2.678934 CACCTTCTCCGGTCCCGA 60.679 66.667 7.42 0.00 42.83 5.14
5447 8090 0.896226 GGAAGCTGAAGACGGTAGGT 59.104 55.000 0.00 0.00 0.00 3.08
5478 8121 1.100463 TGCGCTCCAAGACAGCAAAA 61.100 50.000 9.73 0.00 36.61 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.856000 AGCCCCAGCAACACCTCT 60.856 61.111 0.00 0.00 43.56 3.69
1 2 2.674380 CAGCCCCAGCAACACCTC 60.674 66.667 0.00 0.00 43.56 3.85
2 3 3.501911 ACAGCCCCAGCAACACCT 61.502 61.111 0.00 0.00 43.56 4.00
3 4 3.297620 CACAGCCCCAGCAACACC 61.298 66.667 0.00 0.00 43.56 4.16
4 5 3.982241 GCACAGCCCCAGCAACAC 61.982 66.667 0.00 0.00 43.56 3.32
24 25 3.936772 GAATTGGCCAGGCACCGGA 62.937 63.158 15.19 0.00 0.00 5.14
26 27 2.053865 ATGAATTGGCCAGGCACCG 61.054 57.895 15.19 0.00 0.00 4.94
27 28 1.518774 CATGAATTGGCCAGGCACC 59.481 57.895 15.19 0.00 0.00 5.01
29 30 4.037441 CCATGAATTGGCCAGGCA 57.963 55.556 15.19 6.09 39.09 4.75
37 38 1.066605 GCTGTGCCTAGCCATGAATTG 59.933 52.381 0.00 0.00 37.73 2.32
38 39 1.396653 GCTGTGCCTAGCCATGAATT 58.603 50.000 0.00 0.00 37.73 2.17
39 40 3.106738 GCTGTGCCTAGCCATGAAT 57.893 52.632 0.00 0.00 37.73 2.57
40 41 4.643795 GCTGTGCCTAGCCATGAA 57.356 55.556 0.00 0.00 37.73 2.57
76 77 0.179156 CTGATTTGTGTGCATCCGGC 60.179 55.000 0.00 0.00 45.13 6.13
77 78 0.452987 CCTGATTTGTGTGCATCCGG 59.547 55.000 0.00 0.00 0.00 5.14
78 79 0.179156 GCCTGATTTGTGTGCATCCG 60.179 55.000 0.00 0.00 0.00 4.18
79 80 0.179156 CGCCTGATTTGTGTGCATCC 60.179 55.000 0.00 0.00 0.00 3.51
80 81 0.179156 CCGCCTGATTTGTGTGCATC 60.179 55.000 0.00 0.00 0.00 3.91
81 82 1.885157 CCGCCTGATTTGTGTGCAT 59.115 52.632 0.00 0.00 0.00 3.96
82 83 2.918345 GCCGCCTGATTTGTGTGCA 61.918 57.895 0.00 0.00 0.00 4.57
83 84 2.126346 GCCGCCTGATTTGTGTGC 60.126 61.111 0.00 0.00 0.00 4.57
84 85 2.203972 CTGGCCGCCTGATTTGTGTG 62.204 60.000 11.61 0.00 0.00 3.82
85 86 1.973281 CTGGCCGCCTGATTTGTGT 60.973 57.895 11.61 0.00 0.00 3.72
86 87 1.033746 ATCTGGCCGCCTGATTTGTG 61.034 55.000 22.54 0.00 38.72 3.33
87 88 0.546122 TATCTGGCCGCCTGATTTGT 59.454 50.000 30.13 14.38 41.36 2.83
88 89 1.538512 CATATCTGGCCGCCTGATTTG 59.461 52.381 30.13 27.19 41.36 2.32
89 90 1.901591 CATATCTGGCCGCCTGATTT 58.098 50.000 30.13 21.98 41.36 2.17
90 91 0.607489 GCATATCTGGCCGCCTGATT 60.607 55.000 30.13 17.99 41.36 2.57
91 92 1.002868 GCATATCTGGCCGCCTGAT 60.003 57.895 28.58 28.58 43.09 2.90
92 93 2.104572 GAGCATATCTGGCCGCCTGA 62.105 60.000 20.09 20.09 36.01 3.86
93 94 1.670406 GAGCATATCTGGCCGCCTG 60.670 63.158 11.61 10.74 0.00 4.85
94 95 1.699054 TTGAGCATATCTGGCCGCCT 61.699 55.000 11.61 0.00 0.00 5.52
95 96 0.819259 TTTGAGCATATCTGGCCGCC 60.819 55.000 1.04 1.04 0.00 6.13
96 97 1.198637 GATTTGAGCATATCTGGCCGC 59.801 52.381 0.00 0.00 0.00 6.53
97 98 1.808945 GGATTTGAGCATATCTGGCCG 59.191 52.381 0.00 0.00 0.00 6.13
98 99 1.808945 CGGATTTGAGCATATCTGGCC 59.191 52.381 0.00 0.00 0.00 5.36
99 100 1.808945 CCGGATTTGAGCATATCTGGC 59.191 52.381 13.45 0.00 38.08 4.85
100 101 1.808945 GCCGGATTTGAGCATATCTGG 59.191 52.381 18.73 18.73 43.72 3.86
101 102 1.462283 CGCCGGATTTGAGCATATCTG 59.538 52.381 5.05 3.61 0.00 2.90
102 103 1.609061 CCGCCGGATTTGAGCATATCT 60.609 52.381 5.05 0.00 0.00 1.98
103 104 0.798776 CCGCCGGATTTGAGCATATC 59.201 55.000 5.05 0.00 0.00 1.63
104 105 1.237285 GCCGCCGGATTTGAGCATAT 61.237 55.000 7.68 0.00 0.00 1.78
105 106 1.891919 GCCGCCGGATTTGAGCATA 60.892 57.895 7.68 0.00 0.00 3.14
106 107 3.211963 GCCGCCGGATTTGAGCAT 61.212 61.111 7.68 0.00 0.00 3.79
109 110 3.204827 CTGGCCGCCGGATTTGAG 61.205 66.667 13.55 0.00 29.82 3.02
110 111 4.794648 CCTGGCCGCCGGATTTGA 62.795 66.667 20.65 0.00 29.82 2.69
121 122 4.329545 TCGTTGTCCAGCCTGGCC 62.330 66.667 16.57 0.00 37.47 5.36
122 123 3.050275 GTCGTTGTCCAGCCTGGC 61.050 66.667 11.65 11.65 37.47 4.85
123 124 2.738521 CGTCGTTGTCCAGCCTGG 60.739 66.667 3.69 3.69 39.43 4.45
124 125 2.029073 ACGTCGTTGTCCAGCCTG 59.971 61.111 0.00 0.00 0.00 4.85
125 126 2.029073 CACGTCGTTGTCCAGCCT 59.971 61.111 0.00 0.00 0.00 4.58
126 127 2.028484 TCACGTCGTTGTCCAGCC 59.972 61.111 0.00 0.00 0.00 4.85
127 128 1.299926 AGTCACGTCGTTGTCCAGC 60.300 57.895 0.00 0.00 0.00 4.85
128 129 0.030235 TCAGTCACGTCGTTGTCCAG 59.970 55.000 0.00 0.00 0.00 3.86
129 130 0.030235 CTCAGTCACGTCGTTGTCCA 59.970 55.000 0.00 0.00 0.00 4.02
130 131 0.309922 TCTCAGTCACGTCGTTGTCC 59.690 55.000 0.00 0.00 0.00 4.02
131 132 1.268386 TGTCTCAGTCACGTCGTTGTC 60.268 52.381 0.00 0.00 0.00 3.18
132 133 0.736636 TGTCTCAGTCACGTCGTTGT 59.263 50.000 0.00 0.00 0.00 3.32
133 134 1.835121 TTGTCTCAGTCACGTCGTTG 58.165 50.000 0.00 0.00 0.00 4.10
134 135 2.460918 CTTTGTCTCAGTCACGTCGTT 58.539 47.619 0.00 0.00 0.00 3.85
135 136 1.269102 CCTTTGTCTCAGTCACGTCGT 60.269 52.381 0.00 0.00 0.00 4.34
136 137 1.409412 CCTTTGTCTCAGTCACGTCG 58.591 55.000 0.00 0.00 0.00 5.12
137 138 1.140816 GCCTTTGTCTCAGTCACGTC 58.859 55.000 0.00 0.00 0.00 4.34
138 139 0.249911 GGCCTTTGTCTCAGTCACGT 60.250 55.000 0.00 0.00 0.00 4.49
139 140 0.034059 AGGCCTTTGTCTCAGTCACG 59.966 55.000 0.00 0.00 0.00 4.35
140 141 1.517242 CAGGCCTTTGTCTCAGTCAC 58.483 55.000 0.00 0.00 0.00 3.67
141 142 0.397941 CCAGGCCTTTGTCTCAGTCA 59.602 55.000 0.00 0.00 0.00 3.41
142 143 0.322008 CCCAGGCCTTTGTCTCAGTC 60.322 60.000 0.00 0.00 0.00 3.51
143 144 1.763770 CCCAGGCCTTTGTCTCAGT 59.236 57.895 0.00 0.00 0.00 3.41
144 145 1.001641 CCCCAGGCCTTTGTCTCAG 60.002 63.158 0.00 0.00 0.00 3.35
145 146 2.538141 CCCCCAGGCCTTTGTCTCA 61.538 63.158 0.00 0.00 0.00 3.27
146 147 2.356667 CCCCCAGGCCTTTGTCTC 59.643 66.667 0.00 0.00 0.00 3.36
191 192 4.106925 CTCCCTGTCCAGCCCAGC 62.107 72.222 0.00 0.00 0.00 4.85
192 193 3.406200 CCTCCCTGTCCAGCCCAG 61.406 72.222 0.00 0.00 0.00 4.45
193 194 4.270153 ACCTCCCTGTCCAGCCCA 62.270 66.667 0.00 0.00 0.00 5.36
194 195 3.721706 CACCTCCCTGTCCAGCCC 61.722 72.222 0.00 0.00 0.00 5.19
195 196 3.721706 CCACCTCCCTGTCCAGCC 61.722 72.222 0.00 0.00 0.00 4.85
196 197 4.416738 GCCACCTCCCTGTCCAGC 62.417 72.222 0.00 0.00 0.00 4.85
197 198 3.721706 GGCCACCTCCCTGTCCAG 61.722 72.222 0.00 0.00 0.00 3.86
200 201 3.775654 CTCGGCCACCTCCCTGTC 61.776 72.222 2.24 0.00 0.00 3.51
201 202 3.846405 TTCTCGGCCACCTCCCTGT 62.846 63.158 2.24 0.00 0.00 4.00
202 203 2.124507 TTTTCTCGGCCACCTCCCTG 62.125 60.000 2.24 0.00 0.00 4.45
203 204 1.208165 ATTTTCTCGGCCACCTCCCT 61.208 55.000 2.24 0.00 0.00 4.20
204 205 1.032114 CATTTTCTCGGCCACCTCCC 61.032 60.000 2.24 0.00 0.00 4.30
205 206 1.032114 CCATTTTCTCGGCCACCTCC 61.032 60.000 2.24 0.00 0.00 4.30
206 207 1.657751 GCCATTTTCTCGGCCACCTC 61.658 60.000 2.24 0.00 42.82 3.85
207 208 1.678970 GCCATTTTCTCGGCCACCT 60.679 57.895 2.24 0.00 42.82 4.00
208 209 2.885113 GCCATTTTCTCGGCCACC 59.115 61.111 2.24 0.00 42.82 4.61
213 214 1.138247 GCAGCTGCCATTTTCTCGG 59.862 57.895 28.76 0.00 34.31 4.63
214 215 1.226211 CGCAGCTGCCATTTTCTCG 60.226 57.895 32.07 11.50 37.91 4.04
215 216 0.179179 GTCGCAGCTGCCATTTTCTC 60.179 55.000 32.07 3.17 37.91 2.87
216 217 1.878775 GTCGCAGCTGCCATTTTCT 59.121 52.632 32.07 0.00 37.91 2.52
217 218 1.512734 CGTCGCAGCTGCCATTTTC 60.513 57.895 32.07 14.60 37.91 2.29
218 219 1.308069 ATCGTCGCAGCTGCCATTTT 61.308 50.000 32.07 12.42 37.91 1.82
219 220 1.746615 ATCGTCGCAGCTGCCATTT 60.747 52.632 32.07 11.31 37.91 2.32
220 221 2.124983 ATCGTCGCAGCTGCCATT 60.125 55.556 32.07 10.57 37.91 3.16
221 222 2.893895 CATCGTCGCAGCTGCCAT 60.894 61.111 32.07 16.09 37.91 4.40
230 231 4.944372 CTACCCCGCCATCGTCGC 62.944 72.222 0.00 0.00 0.00 5.19
231 232 4.280494 CCTACCCCGCCATCGTCG 62.280 72.222 0.00 0.00 0.00 5.12
232 233 3.925090 CCCTACCCCGCCATCGTC 61.925 72.222 0.00 0.00 0.00 4.20
233 234 4.791069 ACCCTACCCCGCCATCGT 62.791 66.667 0.00 0.00 0.00 3.73
234 235 3.456105 GAACCCTACCCCGCCATCG 62.456 68.421 0.00 0.00 0.00 3.84
235 236 2.325393 CTGAACCCTACCCCGCCATC 62.325 65.000 0.00 0.00 0.00 3.51
236 237 2.285818 TGAACCCTACCCCGCCAT 60.286 61.111 0.00 0.00 0.00 4.40
237 238 3.006728 CTGAACCCTACCCCGCCA 61.007 66.667 0.00 0.00 0.00 5.69
238 239 3.793888 CCTGAACCCTACCCCGCC 61.794 72.222 0.00 0.00 0.00 6.13
239 240 3.793888 CCCTGAACCCTACCCCGC 61.794 72.222 0.00 0.00 0.00 6.13
240 241 3.087906 CCCCTGAACCCTACCCCG 61.088 72.222 0.00 0.00 0.00 5.73
241 242 2.694992 CCCCCTGAACCCTACCCC 60.695 72.222 0.00 0.00 0.00 4.95
242 243 1.144612 AAACCCCCTGAACCCTACCC 61.145 60.000 0.00 0.00 0.00 3.69
243 244 0.781920 AAAACCCCCTGAACCCTACC 59.218 55.000 0.00 0.00 0.00 3.18
244 245 1.549265 CCAAAACCCCCTGAACCCTAC 60.549 57.143 0.00 0.00 0.00 3.18
245 246 0.781278 CCAAAACCCCCTGAACCCTA 59.219 55.000 0.00 0.00 0.00 3.53
246 247 1.546738 CCAAAACCCCCTGAACCCT 59.453 57.895 0.00 0.00 0.00 4.34
247 248 1.535444 CCCAAAACCCCCTGAACCC 60.535 63.158 0.00 0.00 0.00 4.11
248 249 1.535444 CCCCAAAACCCCCTGAACC 60.535 63.158 0.00 0.00 0.00 3.62
249 250 2.214216 GCCCCAAAACCCCCTGAAC 61.214 63.158 0.00 0.00 0.00 3.18
250 251 2.202899 GCCCCAAAACCCCCTGAA 59.797 61.111 0.00 0.00 0.00 3.02
251 252 4.293671 CGCCCCAAAACCCCCTGA 62.294 66.667 0.00 0.00 0.00 3.86
265 266 3.879180 TTTTTCTCCCCCAGCCGCC 62.879 63.158 0.00 0.00 0.00 6.13
266 267 2.282887 TTTTTCTCCCCCAGCCGC 60.283 61.111 0.00 0.00 0.00 6.53
267 268 1.678970 CCTTTTTCTCCCCCAGCCG 60.679 63.158 0.00 0.00 0.00 5.52
268 269 1.305297 CCCTTTTTCTCCCCCAGCC 60.305 63.158 0.00 0.00 0.00 4.85
269 270 1.305297 CCCCTTTTTCTCCCCCAGC 60.305 63.158 0.00 0.00 0.00 4.85
270 271 1.305297 GCCCCTTTTTCTCCCCCAG 60.305 63.158 0.00 0.00 0.00 4.45
271 272 2.858655 GCCCCTTTTTCTCCCCCA 59.141 61.111 0.00 0.00 0.00 4.96
272 273 2.038975 GGCCCCTTTTTCTCCCCC 59.961 66.667 0.00 0.00 0.00 5.40
273 274 2.038975 GGGCCCCTTTTTCTCCCC 59.961 66.667 12.23 0.00 0.00 4.81
274 275 0.977627 CATGGGCCCCTTTTTCTCCC 60.978 60.000 22.27 0.00 37.49 4.30
275 276 0.252239 ACATGGGCCCCTTTTTCTCC 60.252 55.000 22.27 0.00 0.00 3.71
276 277 0.897621 CACATGGGCCCCTTTTTCTC 59.102 55.000 22.27 0.00 0.00 2.87
277 278 0.190815 ACACATGGGCCCCTTTTTCT 59.809 50.000 22.27 0.00 0.00 2.52
278 279 0.608130 GACACATGGGCCCCTTTTTC 59.392 55.000 22.27 6.69 0.00 2.29
279 280 0.835971 GGACACATGGGCCCCTTTTT 60.836 55.000 22.27 0.00 0.00 1.94
280 281 1.229177 GGACACATGGGCCCCTTTT 60.229 57.895 22.27 0.00 0.00 2.27
281 282 2.445155 GGACACATGGGCCCCTTT 59.555 61.111 22.27 0.00 0.00 3.11
282 283 3.672503 GGGACACATGGGCCCCTT 61.673 66.667 22.27 3.26 35.76 3.95
286 287 4.796495 GTCGGGGACACATGGGCC 62.796 72.222 0.00 0.00 32.09 5.80
288 289 4.467084 CCGTCGGGGACACATGGG 62.467 72.222 2.34 0.00 38.47 4.00
305 306 3.862991 GTCCTTCCCTAGCCCGCC 61.863 72.222 0.00 0.00 0.00 6.13
306 307 3.081409 TGTCCTTCCCTAGCCCGC 61.081 66.667 0.00 0.00 0.00 6.13
307 308 2.901042 GTGTCCTTCCCTAGCCCG 59.099 66.667 0.00 0.00 0.00 6.13
308 309 1.988406 ACGTGTCCTTCCCTAGCCC 60.988 63.158 0.00 0.00 0.00 5.19
309 310 1.218316 CACGTGTCCTTCCCTAGCC 59.782 63.158 7.58 0.00 0.00 3.93
310 311 1.448013 GCACGTGTCCTTCCCTAGC 60.448 63.158 18.38 0.00 0.00 3.42
311 312 0.389948 GTGCACGTGTCCTTCCCTAG 60.390 60.000 18.38 0.00 0.00 3.02
312 313 1.669440 GTGCACGTGTCCTTCCCTA 59.331 57.895 18.38 0.00 0.00 3.53
313 314 2.426023 GTGCACGTGTCCTTCCCT 59.574 61.111 18.38 0.00 0.00 4.20
314 315 3.041940 CGTGCACGTGTCCTTCCC 61.042 66.667 30.50 0.00 34.11 3.97
315 316 3.712881 GCGTGCACGTGTCCTTCC 61.713 66.667 36.80 16.46 42.22 3.46
316 317 4.059459 CGCGTGCACGTGTCCTTC 62.059 66.667 37.45 20.25 44.02 3.46
339 340 3.958147 ATGGACAAGCGCGGACAGG 62.958 63.158 8.83 0.00 0.00 4.00
340 341 1.577328 AAATGGACAAGCGCGGACAG 61.577 55.000 8.83 0.00 0.00 3.51
341 342 1.169661 AAAATGGACAAGCGCGGACA 61.170 50.000 8.83 4.35 0.00 4.02
342 343 0.729140 CAAAATGGACAAGCGCGGAC 60.729 55.000 8.83 0.00 0.00 4.79
343 344 0.886938 TCAAAATGGACAAGCGCGGA 60.887 50.000 8.83 0.00 0.00 5.54
344 345 0.171007 ATCAAAATGGACAAGCGCGG 59.829 50.000 8.83 0.00 0.00 6.46
345 346 1.261989 CATCAAAATGGACAAGCGCG 58.738 50.000 0.00 0.00 0.00 6.86
346 347 0.994263 GCATCAAAATGGACAAGCGC 59.006 50.000 0.00 0.00 33.19 5.92
347 348 2.350899 TGCATCAAAATGGACAAGCG 57.649 45.000 0.00 0.00 33.19 4.68
348 349 3.120923 CGTTTGCATCAAAATGGACAAGC 60.121 43.478 0.00 0.00 35.03 4.01
349 350 3.429543 CCGTTTGCATCAAAATGGACAAG 59.570 43.478 1.44 0.00 45.42 3.16
350 351 3.388308 CCGTTTGCATCAAAATGGACAA 58.612 40.909 1.44 0.00 45.42 3.18
351 352 2.865670 GCCGTTTGCATCAAAATGGACA 60.866 45.455 10.67 0.00 45.42 4.02
352 353 1.726248 GCCGTTTGCATCAAAATGGAC 59.274 47.619 10.67 0.08 45.42 4.02
353 354 1.337635 GGCCGTTTGCATCAAAATGGA 60.338 47.619 10.67 0.00 45.42 3.41
354 355 1.077915 GGCCGTTTGCATCAAAATGG 58.922 50.000 3.15 3.15 45.37 3.16
355 356 1.077915 GGGCCGTTTGCATCAAAATG 58.922 50.000 0.00 0.00 43.89 2.32
356 357 0.683973 TGGGCCGTTTGCATCAAAAT 59.316 45.000 0.00 0.00 43.89 1.82
357 358 0.465705 TTGGGCCGTTTGCATCAAAA 59.534 45.000 0.00 0.00 43.89 2.44
358 359 0.465705 TTTGGGCCGTTTGCATCAAA 59.534 45.000 0.00 0.00 43.89 2.69
359 360 0.033228 CTTTGGGCCGTTTGCATCAA 59.967 50.000 0.00 0.00 43.89 2.57
360 361 1.112315 ACTTTGGGCCGTTTGCATCA 61.112 50.000 0.00 0.00 43.89 3.07
361 362 0.033366 AACTTTGGGCCGTTTGCATC 59.967 50.000 0.00 0.00 43.89 3.91
362 363 1.272212 CTAACTTTGGGCCGTTTGCAT 59.728 47.619 0.00 0.00 43.89 3.96
363 364 0.671251 CTAACTTTGGGCCGTTTGCA 59.329 50.000 0.00 0.00 43.89 4.08
364 365 0.038618 CCTAACTTTGGGCCGTTTGC 60.039 55.000 0.00 0.00 40.16 3.68
372 373 2.532250 ATTCCTGGCCTAACTTTGGG 57.468 50.000 3.32 0.00 0.00 4.12
373 374 3.053619 ACCTATTCCTGGCCTAACTTTGG 60.054 47.826 3.32 1.58 0.00 3.28
374 375 4.200092 GACCTATTCCTGGCCTAACTTTG 58.800 47.826 3.32 0.00 0.00 2.77
375 376 3.118371 CGACCTATTCCTGGCCTAACTTT 60.118 47.826 3.32 0.00 0.00 2.66
376 377 2.434702 CGACCTATTCCTGGCCTAACTT 59.565 50.000 3.32 0.00 0.00 2.66
377 378 2.040178 CGACCTATTCCTGGCCTAACT 58.960 52.381 3.32 0.00 0.00 2.24
378 379 2.037144 TCGACCTATTCCTGGCCTAAC 58.963 52.381 3.32 0.00 0.00 2.34
379 380 2.464796 TCGACCTATTCCTGGCCTAA 57.535 50.000 3.32 0.00 0.00 2.69
380 381 2.696526 ATCGACCTATTCCTGGCCTA 57.303 50.000 3.32 0.00 0.00 3.93
381 382 2.530701 CTATCGACCTATTCCTGGCCT 58.469 52.381 3.32 0.00 0.00 5.19
382 383 1.066787 GCTATCGACCTATTCCTGGCC 60.067 57.143 0.00 0.00 0.00 5.36
383 384 1.402984 CGCTATCGACCTATTCCTGGC 60.403 57.143 0.00 0.00 38.10 4.85
384 385 1.202582 CCGCTATCGACCTATTCCTGG 59.797 57.143 0.00 0.00 38.10 4.45
385 386 2.095161 GTCCGCTATCGACCTATTCCTG 60.095 54.545 0.00 0.00 38.10 3.86
386 387 2.161030 GTCCGCTATCGACCTATTCCT 58.839 52.381 0.00 0.00 38.10 3.36
387 388 1.135746 CGTCCGCTATCGACCTATTCC 60.136 57.143 0.00 0.00 38.10 3.01
388 389 1.802960 TCGTCCGCTATCGACCTATTC 59.197 52.381 0.00 0.00 38.10 1.75
389 390 1.888215 TCGTCCGCTATCGACCTATT 58.112 50.000 0.00 0.00 38.10 1.73
390 391 1.888215 TTCGTCCGCTATCGACCTAT 58.112 50.000 0.00 0.00 38.10 2.57
391 392 1.667236 TTTCGTCCGCTATCGACCTA 58.333 50.000 0.00 0.00 38.10 3.08
392 393 0.813184 TTTTCGTCCGCTATCGACCT 59.187 50.000 0.00 0.00 38.10 3.85
393 394 1.322637 GTTTTTCGTCCGCTATCGACC 59.677 52.381 0.00 0.00 38.10 4.79
394 395 1.322637 GGTTTTTCGTCCGCTATCGAC 59.677 52.381 0.00 0.00 38.10 4.20
395 396 1.632422 GGTTTTTCGTCCGCTATCGA 58.368 50.000 0.00 0.00 38.10 3.59
396 397 0.296642 CGGTTTTTCGTCCGCTATCG 59.703 55.000 0.00 0.00 40.28 2.92
397 398 1.322637 GTCGGTTTTTCGTCCGCTATC 59.677 52.381 0.00 0.00 45.44 2.08
398 399 1.353076 GTCGGTTTTTCGTCCGCTAT 58.647 50.000 0.00 0.00 45.44 2.97
399 400 1.003262 CGTCGGTTTTTCGTCCGCTA 61.003 55.000 0.00 0.00 45.44 4.26
400 401 2.305127 CGTCGGTTTTTCGTCCGCT 61.305 57.895 0.00 0.00 45.44 5.52
401 402 2.092950 AACGTCGGTTTTTCGTCCGC 62.093 55.000 0.00 0.00 45.44 5.54
402 403 0.301388 AAACGTCGGTTTTTCGTCCG 59.699 50.000 0.00 0.00 43.69 4.79
403 404 1.062440 ACAAACGTCGGTTTTTCGTCC 59.938 47.619 0.00 0.00 43.69 4.79
404 405 2.356892 GACAAACGTCGGTTTTTCGTC 58.643 47.619 0.00 0.00 43.69 4.20
405 406 1.062440 GGACAAACGTCGGTTTTTCGT 59.938 47.619 0.00 0.00 43.69 3.85
406 407 1.733706 GGACAAACGTCGGTTTTTCG 58.266 50.000 0.00 0.00 43.69 3.46
407 408 1.062440 ACGGACAAACGTCGGTTTTTC 59.938 47.619 0.00 0.00 45.08 2.29
408 409 1.085893 ACGGACAAACGTCGGTTTTT 58.914 45.000 0.00 0.00 45.08 1.94
409 410 2.766239 ACGGACAAACGTCGGTTTT 58.234 47.368 0.00 0.00 45.08 2.43
410 411 4.519182 ACGGACAAACGTCGGTTT 57.481 50.000 0.00 0.00 45.08 3.27
417 418 1.281656 GGGAGCAAACGGACAAACG 59.718 57.895 0.00 0.00 40.31 3.60
418 419 1.281656 CGGGAGCAAACGGACAAAC 59.718 57.895 0.00 0.00 0.00 2.93
419 420 3.739167 CGGGAGCAAACGGACAAA 58.261 55.556 0.00 0.00 0.00 2.83
437 438 2.021039 CAAAATGCGGCCCAACACG 61.021 57.895 0.00 0.00 0.00 4.49
438 439 0.315568 TACAAAATGCGGCCCAACAC 59.684 50.000 0.00 0.00 0.00 3.32
439 440 1.203523 GATACAAAATGCGGCCCAACA 59.796 47.619 0.00 0.00 0.00 3.33
440 441 1.476488 AGATACAAAATGCGGCCCAAC 59.524 47.619 0.00 0.00 0.00 3.77
441 442 1.846007 AGATACAAAATGCGGCCCAA 58.154 45.000 0.00 0.00 0.00 4.12
442 443 2.719531 TAGATACAAAATGCGGCCCA 57.280 45.000 0.00 0.00 0.00 5.36
443 444 4.584327 AAATAGATACAAAATGCGGCCC 57.416 40.909 0.00 0.00 0.00 5.80
444 445 5.240844 AGGTAAATAGATACAAAATGCGGCC 59.759 40.000 0.00 0.00 0.00 6.13
445 446 6.313744 AGGTAAATAGATACAAAATGCGGC 57.686 37.500 0.00 0.00 0.00 6.53
446 447 6.485313 TGGAGGTAAATAGATACAAAATGCGG 59.515 38.462 0.00 0.00 0.00 5.69
447 448 7.490962 TGGAGGTAAATAGATACAAAATGCG 57.509 36.000 0.00 0.00 0.00 4.73
448 449 9.516314 GTTTGGAGGTAAATAGATACAAAATGC 57.484 33.333 0.00 0.00 0.00 3.56
454 455 9.880157 GTGTTAGTTTGGAGGTAAATAGATACA 57.120 33.333 0.00 0.00 0.00 2.29
455 456 9.028185 CGTGTTAGTTTGGAGGTAAATAGATAC 57.972 37.037 0.00 0.00 0.00 2.24
456 457 8.199449 CCGTGTTAGTTTGGAGGTAAATAGATA 58.801 37.037 0.00 0.00 0.00 1.98
457 458 7.046033 CCGTGTTAGTTTGGAGGTAAATAGAT 58.954 38.462 0.00 0.00 0.00 1.98
458 459 6.400568 CCGTGTTAGTTTGGAGGTAAATAGA 58.599 40.000 0.00 0.00 0.00 1.98
459 460 5.064325 GCCGTGTTAGTTTGGAGGTAAATAG 59.936 44.000 0.00 0.00 0.00 1.73
460 461 4.937015 GCCGTGTTAGTTTGGAGGTAAATA 59.063 41.667 0.00 0.00 0.00 1.40
461 462 3.754850 GCCGTGTTAGTTTGGAGGTAAAT 59.245 43.478 0.00 0.00 0.00 1.40
462 463 3.140623 GCCGTGTTAGTTTGGAGGTAAA 58.859 45.455 0.00 0.00 0.00 2.01
463 464 2.550639 GGCCGTGTTAGTTTGGAGGTAA 60.551 50.000 0.00 0.00 0.00 2.85
464 465 1.002315 GGCCGTGTTAGTTTGGAGGTA 59.998 52.381 0.00 0.00 0.00 3.08
465 466 0.250597 GGCCGTGTTAGTTTGGAGGT 60.251 55.000 0.00 0.00 0.00 3.85
466 467 0.250553 TGGCCGTGTTAGTTTGGAGG 60.251 55.000 0.00 0.00 0.00 4.30
467 468 1.156736 CTGGCCGTGTTAGTTTGGAG 58.843 55.000 0.00 0.00 0.00 3.86
468 469 0.759959 TCTGGCCGTGTTAGTTTGGA 59.240 50.000 0.00 0.00 0.00 3.53
469 470 0.872388 GTCTGGCCGTGTTAGTTTGG 59.128 55.000 0.00 0.00 0.00 3.28
470 471 0.872388 GGTCTGGCCGTGTTAGTTTG 59.128 55.000 0.00 0.00 0.00 2.93
471 472 0.470766 TGGTCTGGCCGTGTTAGTTT 59.529 50.000 0.00 0.00 41.21 2.66
472 473 0.690762 ATGGTCTGGCCGTGTTAGTT 59.309 50.000 0.00 0.00 41.21 2.24
473 474 0.690762 AATGGTCTGGCCGTGTTAGT 59.309 50.000 0.00 0.00 41.21 2.24
474 475 1.468520 CAAATGGTCTGGCCGTGTTAG 59.531 52.381 0.00 0.00 41.21 2.34
475 476 1.529226 CAAATGGTCTGGCCGTGTTA 58.471 50.000 0.00 0.00 41.21 2.41
476 477 1.178534 CCAAATGGTCTGGCCGTGTT 61.179 55.000 0.00 0.00 41.21 3.32
477 478 1.603455 CCAAATGGTCTGGCCGTGT 60.603 57.895 0.00 0.00 41.21 4.49
478 479 2.342650 CCCAAATGGTCTGGCCGTG 61.343 63.158 0.00 0.00 41.21 4.94
479 480 2.035626 CCCAAATGGTCTGGCCGT 59.964 61.111 0.00 0.00 41.21 5.68
480 481 2.755469 CCCCAAATGGTCTGGCCG 60.755 66.667 0.00 0.00 41.21 6.13
481 482 2.445155 ACCCCAAATGGTCTGGCC 59.555 61.111 0.00 0.00 31.15 5.36
487 488 2.282887 GGCACGACCCCAAATGGT 60.283 61.111 0.00 0.00 42.79 3.55
488 489 1.184970 AAAGGCACGACCCCAAATGG 61.185 55.000 0.00 0.00 40.58 3.16
489 490 1.472480 CTAAAGGCACGACCCCAAATG 59.528 52.381 0.00 0.00 40.58 2.32
490 491 1.074889 ACTAAAGGCACGACCCCAAAT 59.925 47.619 0.00 0.00 40.58 2.32
491 492 0.475044 ACTAAAGGCACGACCCCAAA 59.525 50.000 0.00 0.00 40.58 3.28
492 493 0.475044 AACTAAAGGCACGACCCCAA 59.525 50.000 0.00 0.00 40.58 4.12
493 494 0.250553 CAACTAAAGGCACGACCCCA 60.251 55.000 0.00 0.00 40.58 4.96
494 495 1.583495 GCAACTAAAGGCACGACCCC 61.583 60.000 0.00 0.00 40.58 4.95
495 496 1.583495 GGCAACTAAAGGCACGACCC 61.583 60.000 0.00 0.00 40.58 4.46
496 497 1.583495 GGGCAACTAAAGGCACGACC 61.583 60.000 0.00 0.00 39.61 4.79
497 498 0.605589 AGGGCAACTAAAGGCACGAC 60.606 55.000 0.00 0.00 38.80 4.34
498 499 0.109723 AAGGGCAACTAAAGGCACGA 59.890 50.000 0.00 0.00 38.80 4.35
499 500 1.816074 TAAGGGCAACTAAAGGCACG 58.184 50.000 0.00 0.00 38.80 5.34
500 501 2.159240 GCATAAGGGCAACTAAAGGCAC 60.159 50.000 0.00 0.00 0.00 5.01
501 502 2.099405 GCATAAGGGCAACTAAAGGCA 58.901 47.619 0.00 0.00 0.00 4.75
502 503 2.099405 TGCATAAGGGCAACTAAAGGC 58.901 47.619 0.00 0.00 41.65 4.35
503 504 3.782889 GTGCATAAGGGCAACTAAAGG 57.217 47.619 0.00 0.00 46.93 3.11
510 511 0.902516 GGGTTGGTGCATAAGGGCAA 60.903 55.000 0.00 0.00 46.93 4.52
511 512 1.304879 GGGTTGGTGCATAAGGGCA 60.305 57.895 0.00 0.00 42.53 5.36
512 513 0.614697 AAGGGTTGGTGCATAAGGGC 60.615 55.000 0.00 0.00 0.00 5.19
513 514 1.937191 AAAGGGTTGGTGCATAAGGG 58.063 50.000 0.00 0.00 0.00 3.95
514 515 3.323403 TCAAAAAGGGTTGGTGCATAAGG 59.677 43.478 0.00 0.00 0.00 2.69
515 516 4.599047 TCAAAAAGGGTTGGTGCATAAG 57.401 40.909 0.00 0.00 0.00 1.73
516 517 5.359194 TTTCAAAAAGGGTTGGTGCATAA 57.641 34.783 0.00 0.00 0.00 1.90
517 518 5.359194 TTTTCAAAAAGGGTTGGTGCATA 57.641 34.783 0.00 0.00 0.00 3.14
518 519 3.922171 TTTCAAAAAGGGTTGGTGCAT 57.078 38.095 0.00 0.00 0.00 3.96
519 520 3.703001 TTTTCAAAAAGGGTTGGTGCA 57.297 38.095 0.00 0.00 0.00 4.57
520 521 3.944650 ACATTTTCAAAAAGGGTTGGTGC 59.055 39.130 5.06 0.00 34.27 5.01
521 522 5.064579 GTGACATTTTCAAAAAGGGTTGGTG 59.935 40.000 5.06 0.00 35.39 4.17
522 523 5.182487 GTGACATTTTCAAAAAGGGTTGGT 58.818 37.500 5.06 0.00 35.39 3.67
523 524 5.181748 TGTGACATTTTCAAAAAGGGTTGG 58.818 37.500 5.06 0.00 35.39 3.77
524 525 6.538021 TGATGTGACATTTTCAAAAAGGGTTG 59.462 34.615 0.00 0.00 35.39 3.77
525 526 6.648192 TGATGTGACATTTTCAAAAAGGGTT 58.352 32.000 0.00 0.00 35.39 4.11
526 527 6.098124 TCTGATGTGACATTTTCAAAAAGGGT 59.902 34.615 0.00 1.05 35.39 4.34
527 528 6.514947 TCTGATGTGACATTTTCAAAAAGGG 58.485 36.000 0.00 0.00 35.39 3.95
528 529 7.868922 TCATCTGATGTGACATTTTCAAAAAGG 59.131 33.333 16.66 0.00 35.39 3.11
529 530 8.697067 GTCATCTGATGTGACATTTTCAAAAAG 58.303 33.333 16.66 0.00 44.13 2.27
530 531 8.578308 GTCATCTGATGTGACATTTTCAAAAA 57.422 30.769 16.66 0.00 44.13 1.94
541 542 2.871022 GCCATCTGTCATCTGATGTGAC 59.129 50.000 16.66 10.48 43.63 3.67
542 543 2.482490 CGCCATCTGTCATCTGATGTGA 60.482 50.000 16.66 13.32 43.63 3.58
543 544 1.865340 CGCCATCTGTCATCTGATGTG 59.135 52.381 16.66 7.71 43.63 3.21
544 545 1.758862 TCGCCATCTGTCATCTGATGT 59.241 47.619 16.66 0.00 43.63 3.06
545 546 2.133553 GTCGCCATCTGTCATCTGATG 58.866 52.381 11.42 11.42 44.26 3.07
546 547 2.037901 AGTCGCCATCTGTCATCTGAT 58.962 47.619 0.00 0.00 33.56 2.90
547 548 1.478631 AGTCGCCATCTGTCATCTGA 58.521 50.000 0.00 0.00 0.00 3.27
548 549 2.861750 GCTAGTCGCCATCTGTCATCTG 60.862 54.545 0.00 0.00 0.00 2.90
549 550 1.339610 GCTAGTCGCCATCTGTCATCT 59.660 52.381 0.00 0.00 0.00 2.90
550 551 1.777101 GCTAGTCGCCATCTGTCATC 58.223 55.000 0.00 0.00 0.00 2.92
551 552 0.031314 CGCTAGTCGCCATCTGTCAT 59.969 55.000 0.00 0.00 34.21 3.06
552 553 1.433471 CGCTAGTCGCCATCTGTCA 59.567 57.895 0.00 0.00 34.21 3.58
553 554 4.310672 CGCTAGTCGCCATCTGTC 57.689 61.111 0.00 0.00 34.21 3.51
618 688 1.541670 GGGGCAAGAACGTTGACACTA 60.542 52.381 5.00 0.00 0.00 2.74
628 698 0.672711 GTGACGGTAGGGGCAAGAAC 60.673 60.000 0.00 0.00 0.00 3.01
640 710 2.029073 CAGCGGTTGAGTGACGGT 59.971 61.111 0.00 0.00 39.05 4.83
741 836 0.736325 ATCTGTGGCAACGACTACGC 60.736 55.000 0.00 0.00 43.96 4.42
816 3129 3.181494 GGGCAAAAACGTTGACACTTAGT 60.181 43.478 0.00 0.00 0.00 2.24
874 3209 3.321111 TCCAGTCAACACTTAGTCCAGTC 59.679 47.826 0.00 0.00 0.00 3.51
996 3336 2.277501 GTGCGGCGCAACATGATC 60.278 61.111 38.05 18.71 41.47 2.92
1010 3350 4.107051 GCTGCATCGGTGGTGTGC 62.107 66.667 0.00 0.00 39.26 4.57
1057 3397 0.036388 ATCAAAAGCTCGCCGGAGAA 60.036 50.000 9.83 0.00 43.27 2.87
1168 3508 2.603473 CCAGTCCCAGTCCGACCA 60.603 66.667 0.00 0.00 0.00 4.02
1187 3527 1.073025 AGGCAGCAATGTCCGTCAA 59.927 52.632 0.00 0.00 0.00 3.18
1287 3633 3.491104 GGAACATAGTAGCGTTGAGGAGG 60.491 52.174 0.00 0.00 0.00 4.30
1323 3669 3.325753 AGGGACAGGGTCTGCAGC 61.326 66.667 9.47 4.04 34.37 5.25
1342 3688 8.270744 AGGTATGCATCCCTTGATATTTAGATC 58.729 37.037 4.71 0.00 0.00 2.75
1353 3699 1.683943 CACCAGGTATGCATCCCTTG 58.316 55.000 8.34 8.01 0.00 3.61
1536 3901 0.509929 GACAAAACAGTCGGCGGTAC 59.490 55.000 7.21 0.00 0.00 3.34
1543 3908 1.126846 GATGGCGAGACAAAACAGTCG 59.873 52.381 0.00 0.00 43.24 4.18
1557 3922 1.932511 GAAGCAAGAGAAGAGATGGCG 59.067 52.381 0.00 0.00 0.00 5.69
1570 3935 6.267817 TCAAAATCTGAAGTGTTGAAGCAAG 58.732 36.000 0.00 0.00 0.00 4.01
1621 4003 4.448395 CGCAATTTTGACCACACATCAAAT 59.552 37.500 1.32 0.00 43.65 2.32
1645 4027 5.877564 AGCTAGATCAAGGCTTGTTAGTTTC 59.122 40.000 25.39 13.68 31.81 2.78
1649 4031 4.125703 CCAGCTAGATCAAGGCTTGTTAG 58.874 47.826 25.39 22.69 33.74 2.34
1653 4035 2.996249 TCCAGCTAGATCAAGGCTTG 57.004 50.000 21.17 21.17 33.74 4.01
1667 4049 7.042389 GCTGTAGTCACTTAAGATATTTCCAGC 60.042 40.741 10.09 13.13 0.00 4.85
1697 4079 3.994392 GACGAAACTGCAACTAAGGATGA 59.006 43.478 0.00 0.00 0.00 2.92
1763 4145 1.815421 GCTCACGTTGGATCGCCAT 60.815 57.895 0.00 0.00 45.46 4.40
1782 4164 7.601508 GGAATAAAGAGTGGAGAACTACGAAAA 59.398 37.037 0.00 0.00 40.07 2.29
1783 4165 7.095270 GGAATAAAGAGTGGAGAACTACGAAA 58.905 38.462 0.00 0.00 40.07 3.46
1832 4214 3.897505 TCTCCAAGATTCTGTGACACTCA 59.102 43.478 7.20 0.00 0.00 3.41
1833 4215 4.241681 GTCTCCAAGATTCTGTGACACTC 58.758 47.826 7.20 0.00 0.00 3.51
1834 4216 3.007398 GGTCTCCAAGATTCTGTGACACT 59.993 47.826 7.20 0.00 0.00 3.55
1837 4219 3.685139 TGGTCTCCAAGATTCTGTGAC 57.315 47.619 0.00 0.00 0.00 3.67
1839 4221 3.743521 TGTTGGTCTCCAAGATTCTGTG 58.256 45.455 1.16 0.00 44.82 3.66
1840 4222 4.437682 TTGTTGGTCTCCAAGATTCTGT 57.562 40.909 1.16 0.00 44.82 3.41
1841 4223 5.972107 AATTGTTGGTCTCCAAGATTCTG 57.028 39.130 1.16 0.00 44.82 3.02
1844 4257 7.603784 GCATTTAAATTGTTGGTCTCCAAGATT 59.396 33.333 0.00 3.54 44.82 2.40
1919 4332 6.148315 TGAATGCATTATCGCTTAGATCAAGG 59.852 38.462 12.97 0.00 40.66 3.61
1992 4405 1.534717 CCACCCCGGGACCGTATAT 60.535 63.158 26.32 0.00 37.81 0.86
2014 4427 1.195448 CTTGTGCTTTAGCTCACCACG 59.805 52.381 6.03 0.00 43.16 4.94
2018 4431 5.557891 ATCATTCTTGTGCTTTAGCTCAC 57.442 39.130 6.03 0.00 43.16 3.51
2138 4578 9.849166 AAAACATTTTATATTTGTGTACGGAGG 57.151 29.630 0.00 0.00 0.00 4.30
2184 4624 1.331756 CACTCATTTCAGCCCGTATGC 59.668 52.381 0.00 0.00 0.00 3.14
2192 4632 4.500477 GTGTGTTTGTTCACTCATTTCAGC 59.500 41.667 0.00 0.00 38.90 4.26
2395 4838 4.553323 GAAGCTCTCCAAACAACGTACTA 58.447 43.478 0.00 0.00 0.00 1.82
2527 4973 5.196695 AGATTGTTATTGGAGAGGGAAAGC 58.803 41.667 0.00 0.00 0.00 3.51
2594 5040 4.094590 GCTTGAAAGATCCAGATGTGTCAG 59.905 45.833 0.00 0.00 31.08 3.51
2687 5139 7.632680 GCCATTAAGGTTACAATTTGGCAGTAT 60.633 37.037 5.77 0.00 45.93 2.12
2717 5169 8.433126 CGATAAGAAACTTAATATAACGGCAGG 58.567 37.037 0.00 0.00 0.00 4.85
2746 5198 4.082625 TCAACAGCTTCTAATGCATGTTGG 60.083 41.667 19.78 2.01 42.52 3.77
2873 5325 5.107065 CGTGTACTTTGGATGGAAGAAGAAC 60.107 44.000 0.00 0.00 0.00 3.01
3094 5546 2.520069 TGCTTCCATTAAAGGCGGAAA 58.480 42.857 0.00 0.00 38.32 3.13
3095 5547 2.208132 TGCTTCCATTAAAGGCGGAA 57.792 45.000 0.00 0.00 37.28 4.30
3302 5754 5.480642 CATGTATGCAAGTAGGGAGAGAT 57.519 43.478 0.00 0.00 0.00 2.75
3374 5826 2.548057 GCATAATTTCAGCGGGATCGAA 59.452 45.455 0.00 0.00 39.00 3.71
3380 5832 0.385390 GGTGGCATAATTTCAGCGGG 59.615 55.000 0.00 0.00 0.00 6.13
3688 6140 3.468770 TGAGACAGATCTAGTAGACGCC 58.531 50.000 0.85 0.00 34.34 5.68
3775 6404 7.891561 AGTATCTGAGTCATTGTATAGGAAGC 58.108 38.462 0.00 0.00 0.00 3.86
3826 6455 5.652891 CCTACTACGCTCCCAATATCATAGT 59.347 44.000 0.00 0.00 0.00 2.12
3853 6482 2.286365 AAATTCAGGCACGGGAGAAA 57.714 45.000 0.00 0.00 0.00 2.52
3963 6592 3.565902 CCTTCCAACTGGTTTGAAGAGAC 59.434 47.826 21.20 0.00 41.91 3.36
4247 6876 1.735920 CGGATCGCCTGCATAGCTC 60.736 63.158 7.22 0.00 0.00 4.09
4265 6894 0.179108 GTGGTGGTCCGCAGAGATAC 60.179 60.000 4.48 0.00 43.16 2.24
4318 6947 4.356405 TCTTCATGTTCTTCAGGCTGAA 57.644 40.909 27.01 27.01 34.79 3.02
4358 6987 4.520492 ACTGAAAAACTGAATAGTGCCAGG 59.480 41.667 0.00 0.00 37.19 4.45
4439 7068 0.899717 AAAACCATGACCAGCGCCAT 60.900 50.000 2.29 0.00 0.00 4.40
4608 7238 8.903820 ACACAAGAAAGTAGCATAAAAAGTCTT 58.096 29.630 0.00 0.00 0.00 3.01
4612 7242 9.301153 ACAAACACAAGAAAGTAGCATAAAAAG 57.699 29.630 0.00 0.00 0.00 2.27
4615 7245 9.081997 CAAACAAACACAAGAAAGTAGCATAAA 57.918 29.630 0.00 0.00 0.00 1.40
4617 7247 6.695278 GCAAACAAACACAAGAAAGTAGCATA 59.305 34.615 0.00 0.00 0.00 3.14
4628 7258 8.250332 ACCCATATATTAGCAAACAAACACAAG 58.750 33.333 0.00 0.00 0.00 3.16
4649 7279 6.303839 ACTTCACTACATTTTGTGTACCCAT 58.696 36.000 0.00 0.00 42.29 4.00
4662 7292 6.940739 AGAAGCAGTCATAACTTCACTACAT 58.059 36.000 4.94 0.00 41.80 2.29
4716 7347 6.445357 AACAACAACGGTCTTGAAGTAATT 57.555 33.333 0.00 0.00 0.00 1.40
4723 7354 5.527951 TGCTATTTAACAACAACGGTCTTGA 59.472 36.000 0.00 0.00 0.00 3.02
4735 7366 8.979574 CAAATTTTAACGGGTGCTATTTAACAA 58.020 29.630 0.00 0.00 0.00 2.83
4736 7367 8.142551 ACAAATTTTAACGGGTGCTATTTAACA 58.857 29.630 0.00 0.00 0.00 2.41
4741 7372 6.091718 ACACAAATTTTAACGGGTGCTATT 57.908 33.333 4.49 0.00 0.00 1.73
4748 7379 9.124807 GAAATAGAGAACACAAATTTTAACGGG 57.875 33.333 0.00 0.00 0.00 5.28
4807 7438 2.815503 GTCCTAGCTCCGACTAGATTCC 59.184 54.545 0.00 0.00 41.92 3.01
4813 7444 1.419387 GTAGGGTCCTAGCTCCGACTA 59.581 57.143 11.66 0.00 0.00 2.59
4814 7445 0.183252 GTAGGGTCCTAGCTCCGACT 59.817 60.000 11.66 0.00 0.00 4.18
4817 7448 1.897615 CGGTAGGGTCCTAGCTCCG 60.898 68.421 19.93 14.60 42.80 4.63
4865 7496 4.415150 CCGCCACATCCAGCACCT 62.415 66.667 0.00 0.00 0.00 4.00
4945 7577 3.925914 AACCCTAGCCGCCTCCTGT 62.926 63.158 0.00 0.00 0.00 4.00
5079 7718 4.508943 GGGCAGGTTTAGTTAGGGGTTTAA 60.509 45.833 0.00 0.00 0.00 1.52
5083 7722 0.997363 GGGCAGGTTTAGTTAGGGGT 59.003 55.000 0.00 0.00 0.00 4.95
5169 7810 2.582052 CTAGACTTCCAGCTCGAGGAT 58.418 52.381 15.58 0.00 34.56 3.24
5188 7829 1.889530 GAGTTCCGCCAGCACTACCT 61.890 60.000 0.00 0.00 0.00 3.08
5215 7856 1.099689 GAGGACGCTACTTGAGAGCT 58.900 55.000 0.00 0.00 37.81 4.09
5220 7861 1.464734 CAGAGGAGGACGCTACTTGA 58.535 55.000 0.00 0.00 0.00 3.02
5373 8016 3.267974 CTGTTGAAGCCCTTCCGC 58.732 61.111 5.64 0.04 38.77 5.54
5447 8090 3.371097 GAGCGCATCGGGAAGGTGA 62.371 63.158 11.47 0.00 30.86 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.