Multiple sequence alignment - TraesCS2D01G489900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G489900 chr2D 100.000 4574 0 0 1 4574 588789611 588794184 0.000000e+00 8447.0
1 TraesCS2D01G489900 chr2D 87.614 1429 95 37 885 2289 590990815 590989445 0.000000e+00 1583.0
2 TraesCS2D01G489900 chr2D 88.357 1108 80 31 2719 3808 590989482 590988406 0.000000e+00 1286.0
3 TraesCS2D01G489900 chr2D 81.761 159 25 3 3874 4032 43408856 43409010 3.710000e-26 130.0
4 TraesCS2D01G489900 chr2D 100.000 39 0 0 2050 2088 588791621 588791659 6.350000e-09 73.1
5 TraesCS2D01G489900 chr2D 100.000 39 0 0 2011 2049 588791660 588791698 6.350000e-09 73.1
6 TraesCS2D01G489900 chr2A 89.897 3870 237 75 1 3814 723517796 723521567 0.000000e+00 4839.0
7 TraesCS2D01G489900 chr2A 87.714 1457 95 40 872 2289 725994248 725992837 0.000000e+00 1622.0
8 TraesCS2D01G489900 chr2A 87.695 1154 88 34 2719 3851 725992874 725991754 0.000000e+00 1295.0
9 TraesCS2D01G489900 chr2A 81.910 199 31 4 408 604 670676627 670676432 3.660000e-36 163.0
10 TraesCS2D01G489900 chr2A 81.290 155 24 4 3874 4028 45141787 45141936 2.240000e-23 121.0
11 TraesCS2D01G489900 chr2A 83.721 129 16 5 485 610 767009207 767009081 2.890000e-22 117.0
12 TraesCS2D01G489900 chr2B 91.423 1574 80 30 987 2546 712597400 712598932 0.000000e+00 2108.0
13 TraesCS2D01G489900 chr2B 92.370 1481 83 15 2580 4045 712599389 712600854 0.000000e+00 2082.0
14 TraesCS2D01G489900 chr2B 88.293 1435 94 36 872 2289 716596022 716594645 0.000000e+00 1652.0
15 TraesCS2D01G489900 chr2B 86.122 1297 105 42 2596 3851 716594825 716593563 0.000000e+00 1328.0
16 TraesCS2D01G489900 chr2B 89.747 751 61 11 1 740 712596169 712596914 0.000000e+00 946.0
17 TraesCS2D01G489900 chr2B 84.165 461 47 16 2115 2551 712598811 712599269 1.520000e-114 424.0
18 TraesCS2D01G489900 chr2B 93.750 160 10 0 749 908 712596955 712597114 1.640000e-59 241.0
19 TraesCS2D01G489900 chr2B 86.555 119 7 1 1570 1688 12708593 12708702 6.210000e-24 122.0
20 TraesCS2D01G489900 chr2B 76.448 259 31 22 4324 4574 712601023 712601259 3.740000e-21 113.0
21 TraesCS2D01G489900 chrUn 78.223 349 18 17 1340 1688 93957710 93958000 2.190000e-38 171.0
22 TraesCS2D01G489900 chr1D 76.526 426 23 26 1340 1762 66758884 66759235 1.320000e-35 161.0
23 TraesCS2D01G489900 chr1D 83.146 178 11 4 1340 1517 370167928 370168086 1.330000e-30 145.0
24 TraesCS2D01G489900 chr5D 83.237 173 23 5 3860 4032 176102071 176102237 2.200000e-33 154.0
25 TraesCS2D01G489900 chr3D 77.364 349 21 17 1340 1688 21935376 21935666 2.200000e-33 154.0
26 TraesCS2D01G489900 chr7A 84.277 159 21 3 3875 4032 701493631 701493476 7.930000e-33 152.0
27 TraesCS2D01G489900 chr5B 84.783 138 17 3 3874 4011 503076422 503076555 7.980000e-28 135.0
28 TraesCS2D01G489900 chr3A 88.235 119 5 1 1570 1688 668637761 668637870 2.870000e-27 134.0
29 TraesCS2D01G489900 chr3A 81.752 137 19 6 389 521 597187349 597187483 4.840000e-20 110.0
30 TraesCS2D01G489900 chr3A 73.783 267 44 17 337 601 695129094 695129336 1.050000e-11 82.4
31 TraesCS2D01G489900 chr4D 82.166 157 24 3 3876 4032 85011280 85011128 1.030000e-26 132.0
32 TraesCS2D01G489900 chr4D 82.278 158 22 5 3876 4032 480827403 480827555 1.030000e-26 132.0
33 TraesCS2D01G489900 chr5A 83.942 137 18 3 3875 4011 528889094 528889226 1.340000e-25 128.0
34 TraesCS2D01G489900 chr5A 78.632 117 19 6 495 609 524978066 524978178 6.350000e-09 73.1
35 TraesCS2D01G489900 chr7D 85.965 57 5 3 4335 4389 52709963 52710018 1.780000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G489900 chr2D 588789611 588794184 4573 False 2864.400000 8447 100.000000 1 4574 3 chr2D.!!$F2 4573
1 TraesCS2D01G489900 chr2D 590988406 590990815 2409 True 1434.500000 1583 87.985500 885 3808 2 chr2D.!!$R1 2923
2 TraesCS2D01G489900 chr2A 723517796 723521567 3771 False 4839.000000 4839 89.897000 1 3814 1 chr2A.!!$F2 3813
3 TraesCS2D01G489900 chr2A 725991754 725994248 2494 True 1458.500000 1622 87.704500 872 3851 2 chr2A.!!$R3 2979
4 TraesCS2D01G489900 chr2B 716593563 716596022 2459 True 1490.000000 1652 87.207500 872 3851 2 chr2B.!!$R1 2979
5 TraesCS2D01G489900 chr2B 712596169 712601259 5090 False 985.666667 2108 87.983833 1 4574 6 chr2B.!!$F2 4573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 87 0.031515 TCGATCCTAGGGGCCTTTCA 60.032 55.0 9.46 0.0 0.0 2.69 F
363 374 0.251922 AGGACTGCAATGCCATGGTT 60.252 50.0 14.67 0.0 0.0 3.67 F
919 965 0.482887 AAACCCTCCTCACCCCAAAG 59.517 55.0 0.00 0.0 0.0 2.77 F
2051 2355 0.179094 ACGACCTGCTTGACAAACGA 60.179 50.0 0.00 0.0 0.0 3.85 F
2058 2362 0.804989 GCTTGACAAACGATGGAGGG 59.195 55.0 0.00 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 2142 0.250640 CTGCTTCACCACTGAGCCTT 60.251 55.000 0.00 0.0 0.0 4.35 R
2033 2337 1.136252 CATCGTTTGTCAAGCAGGTCG 60.136 52.381 0.14 0.0 0.0 4.79 R
2361 3027 2.086869 CCGTCAGATCCAGCAAACATT 58.913 47.619 0.00 0.0 0.0 2.71 R
3203 3983 0.036010 AGCCAAGGTTCATCAGACGG 60.036 55.000 0.00 0.0 0.0 4.79 R
3897 4703 0.682209 GGGTCAGAGCGTACACCCTA 60.682 60.000 9.13 0.0 44.7 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.700234 TGTAAGCTTATATTTGAAAATGTGCCG 59.300 33.333 9.88 0.00 0.00 5.69
33 34 7.042797 AGCTTATATTTGAAAATGTGCCGAT 57.957 32.000 0.00 0.00 0.00 4.18
67 71 1.134431 ACAGCACATGCATACCATCGA 60.134 47.619 6.64 0.00 45.16 3.59
72 76 3.617288 GCACATGCATACCATCGATCCTA 60.617 47.826 0.00 0.00 41.59 2.94
80 84 0.838122 CCATCGATCCTAGGGGCCTT 60.838 60.000 9.46 0.00 0.00 4.35
83 87 0.031515 TCGATCCTAGGGGCCTTTCA 60.032 55.000 9.46 0.00 0.00 2.69
85 89 1.421646 CGATCCTAGGGGCCTTTCAAT 59.578 52.381 9.46 0.00 0.00 2.57
94 98 1.342374 GGGCCTTTCAATCCCTGATGT 60.342 52.381 0.84 0.00 37.08 3.06
96 100 3.217626 GGCCTTTCAATCCCTGATGTAG 58.782 50.000 0.00 0.00 32.78 2.74
122 126 2.572104 GGGCTTTCTTAACCTCCTCTGA 59.428 50.000 0.00 0.00 0.00 3.27
132 136 4.899352 AACCTCCTCTGATGTATATGGC 57.101 45.455 0.00 0.00 0.00 4.40
143 147 5.125356 TGATGTATATGGCTGTGTCAAAGG 58.875 41.667 0.00 0.00 0.00 3.11
147 151 5.822519 TGTATATGGCTGTGTCAAAGGATTC 59.177 40.000 0.00 0.00 0.00 2.52
149 153 3.228188 TGGCTGTGTCAAAGGATTCTT 57.772 42.857 0.00 0.00 34.07 2.52
164 168 9.504708 CAAAGGATTCTTCATAGCTTCTGATAT 57.495 33.333 0.00 0.00 31.82 1.63
169 173 6.201226 TCTTCATAGCTTCTGATATAGGCG 57.799 41.667 0.00 0.00 0.00 5.52
185 189 3.134574 AGGCGGTATGACTTTGTTCAA 57.865 42.857 0.00 0.00 20.56 2.69
197 201 5.108385 ACTTTGTTCAACACATCCGAATC 57.892 39.130 0.00 0.00 34.43 2.52
213 218 3.612860 CCGAATCTGTTCAACTACTTCGG 59.387 47.826 17.55 17.55 45.00 4.30
238 244 7.173390 GGTAGTGAATAGACCTGCAAATAATCC 59.827 40.741 0.00 0.00 0.00 3.01
311 320 5.364446 TCCTTTAGGGACTATTTGATACGCA 59.636 40.000 0.00 0.00 42.38 5.24
333 342 6.564125 CGCAGTATTCTAAAATCACGGGAATC 60.564 42.308 0.00 0.00 0.00 2.52
335 344 6.700081 CAGTATTCTAAAATCACGGGAATCGA 59.300 38.462 0.00 0.00 42.43 3.59
363 374 0.251922 AGGACTGCAATGCCATGGTT 60.252 50.000 14.67 0.00 0.00 3.67
378 389 5.827797 TGCCATGGTTATCTCAATCCTAAAC 59.172 40.000 14.67 0.00 0.00 2.01
383 394 6.522054 TGGTTATCTCAATCCTAAACGATCC 58.478 40.000 0.00 0.00 0.00 3.36
642 656 4.193090 TCTTCCTGCGTTCAACAAAGTTA 58.807 39.130 0.00 0.00 0.00 2.24
736 750 5.105853 AGGTTTAACTAGGAGGGGATCAAA 58.894 41.667 0.00 0.00 0.00 2.69
744 788 5.676811 ACTAGGAGGGGATCAAATAAACCAT 59.323 40.000 0.00 0.00 0.00 3.55
751 795 4.387437 GGGATCAAATAAACCATGGAGGGA 60.387 45.833 21.47 6.13 43.89 4.20
883 929 1.384191 GGCCCAGTCCATTTCCACT 59.616 57.895 0.00 0.00 0.00 4.00
912 958 1.920351 TCCCCATAAAACCCTCCTCAC 59.080 52.381 0.00 0.00 0.00 3.51
913 959 1.063942 CCCCATAAAACCCTCCTCACC 60.064 57.143 0.00 0.00 0.00 4.02
914 960 1.063942 CCCATAAAACCCTCCTCACCC 60.064 57.143 0.00 0.00 0.00 4.61
915 961 1.063942 CCATAAAACCCTCCTCACCCC 60.064 57.143 0.00 0.00 0.00 4.95
916 962 1.638589 CATAAAACCCTCCTCACCCCA 59.361 52.381 0.00 0.00 0.00 4.96
917 963 1.835895 TAAAACCCTCCTCACCCCAA 58.164 50.000 0.00 0.00 0.00 4.12
918 964 0.938192 AAAACCCTCCTCACCCCAAA 59.062 50.000 0.00 0.00 0.00 3.28
919 965 0.482887 AAACCCTCCTCACCCCAAAG 59.517 55.000 0.00 0.00 0.00 2.77
920 966 2.081585 AACCCTCCTCACCCCAAAGC 62.082 60.000 0.00 0.00 0.00 3.51
967 1019 4.675303 CCCACCACTCCCCCTCCA 62.675 72.222 0.00 0.00 0.00 3.86
975 1031 3.615811 TCCCCCTCCACCTCTGCT 61.616 66.667 0.00 0.00 0.00 4.24
1026 1284 3.358076 CTCCGTGGAGAAGACCGCC 62.358 68.421 10.50 0.00 44.53 6.13
1101 1359 4.544689 CTCGAGCTCGCCGAGGTG 62.545 72.222 30.97 15.34 46.85 4.00
1726 1985 4.651962 AGAGCAAGGTATACTTCCTTCCTC 59.348 45.833 7.36 7.36 45.29 3.71
1727 1986 4.625963 AGCAAGGTATACTTCCTTCCTCT 58.374 43.478 2.25 0.00 42.57 3.69
1867 2142 6.519679 TCTCGTTGTTGCCTAGTTTAGATA 57.480 37.500 0.00 0.00 0.00 1.98
1958 2236 3.125316 TGTTACGCTGGTTGTCAACTAC 58.875 45.455 15.17 4.70 0.00 2.73
1959 2237 3.181473 TGTTACGCTGGTTGTCAACTACT 60.181 43.478 15.17 0.00 0.00 2.57
1960 2238 4.037803 TGTTACGCTGGTTGTCAACTACTA 59.962 41.667 15.17 0.09 0.00 1.82
1961 2239 3.955650 ACGCTGGTTGTCAACTACTAT 57.044 42.857 15.17 0.00 0.00 2.12
1969 2247 7.392494 TGGTTGTCAACTACTATCTGACTAG 57.608 40.000 15.17 0.00 40.14 2.57
2033 2337 6.100668 GCGATGGAGGGTCTAATTATAGAAC 58.899 44.000 0.00 0.00 43.87 3.01
2043 2347 6.421202 GGTCTAATTATAGAACGACCTGCTTG 59.579 42.308 10.57 0.00 39.81 4.01
2049 2353 1.940613 AGAACGACCTGCTTGACAAAC 59.059 47.619 0.00 0.00 0.00 2.93
2050 2354 0.655733 AACGACCTGCTTGACAAACG 59.344 50.000 0.00 0.00 0.00 3.60
2051 2355 0.179094 ACGACCTGCTTGACAAACGA 60.179 50.000 0.00 0.00 0.00 3.85
2052 2356 1.148310 CGACCTGCTTGACAAACGAT 58.852 50.000 0.00 0.00 0.00 3.73
2053 2357 1.136252 CGACCTGCTTGACAAACGATG 60.136 52.381 0.00 0.00 0.00 3.84
2054 2358 1.197721 GACCTGCTTGACAAACGATGG 59.802 52.381 0.00 0.00 0.00 3.51
2055 2359 1.202758 ACCTGCTTGACAAACGATGGA 60.203 47.619 0.00 0.00 0.00 3.41
2056 2360 1.466167 CCTGCTTGACAAACGATGGAG 59.534 52.381 0.00 0.00 0.00 3.86
2057 2361 1.466167 CTGCTTGACAAACGATGGAGG 59.534 52.381 0.00 0.00 0.00 4.30
2058 2362 0.804989 GCTTGACAAACGATGGAGGG 59.195 55.000 0.00 0.00 0.00 4.30
2059 2363 1.882352 GCTTGACAAACGATGGAGGGT 60.882 52.381 0.00 0.00 0.00 4.34
2060 2364 2.076863 CTTGACAAACGATGGAGGGTC 58.923 52.381 0.00 0.00 0.00 4.46
2061 2365 1.348064 TGACAAACGATGGAGGGTCT 58.652 50.000 0.00 0.00 0.00 3.85
2062 2366 2.531771 TGACAAACGATGGAGGGTCTA 58.468 47.619 0.00 0.00 0.00 2.59
2063 2367 2.901192 TGACAAACGATGGAGGGTCTAA 59.099 45.455 0.00 0.00 0.00 2.10
2064 2368 3.517901 TGACAAACGATGGAGGGTCTAAT 59.482 43.478 0.00 0.00 0.00 1.73
2065 2369 4.019681 TGACAAACGATGGAGGGTCTAATT 60.020 41.667 0.00 0.00 0.00 1.40
2066 2370 5.188163 TGACAAACGATGGAGGGTCTAATTA 59.812 40.000 0.00 0.00 0.00 1.40
2067 2371 6.126883 TGACAAACGATGGAGGGTCTAATTAT 60.127 38.462 0.00 0.00 0.00 1.28
2068 2372 7.070198 TGACAAACGATGGAGGGTCTAATTATA 59.930 37.037 0.00 0.00 0.00 0.98
2069 2373 7.442656 ACAAACGATGGAGGGTCTAATTATAG 58.557 38.462 0.00 0.00 0.00 1.31
2070 2374 7.289317 ACAAACGATGGAGGGTCTAATTATAGA 59.711 37.037 0.00 0.00 35.78 1.98
2071 2375 7.850935 AACGATGGAGGGTCTAATTATAGAA 57.149 36.000 0.00 0.00 39.81 2.10
2072 2376 7.229581 ACGATGGAGGGTCTAATTATAGAAC 57.770 40.000 0.00 0.00 43.87 3.01
2073 2377 6.072064 ACGATGGAGGGTCTAATTATAGAACG 60.072 42.308 0.00 0.00 45.27 3.95
2074 2378 6.150641 CGATGGAGGGTCTAATTATAGAACGA 59.849 42.308 0.00 0.00 45.27 3.85
2075 2379 6.645790 TGGAGGGTCTAATTATAGAACGAC 57.354 41.667 0.00 0.00 45.27 4.34
2076 2380 5.537674 TGGAGGGTCTAATTATAGAACGACC 59.462 44.000 9.71 9.71 45.27 4.79
2077 2381 5.774184 GGAGGGTCTAATTATAGAACGACCT 59.226 44.000 15.22 5.84 45.27 3.85
2078 2382 6.294620 GGAGGGTCTAATTATAGAACGACCTG 60.295 46.154 15.22 0.00 45.27 4.00
2079 2383 5.010820 AGGGTCTAATTATAGAACGACCTGC 59.989 44.000 15.22 4.37 45.27 4.85
2080 2384 5.010820 GGGTCTAATTATAGAACGACCTGCT 59.989 44.000 15.22 0.00 45.27 4.24
2081 2385 6.462628 GGGTCTAATTATAGAACGACCTGCTT 60.463 42.308 15.22 0.00 45.27 3.91
2082 2386 6.421202 GGTCTAATTATAGAACGACCTGCTTG 59.579 42.308 10.57 0.00 39.81 4.01
2083 2387 7.201145 GTCTAATTATAGAACGACCTGCTTGA 58.799 38.462 0.00 0.00 39.81 3.02
2084 2388 7.167801 GTCTAATTATAGAACGACCTGCTTGAC 59.832 40.741 0.00 0.00 39.81 3.18
2085 2389 4.794278 TTATAGAACGACCTGCTTGACA 57.206 40.909 0.00 0.00 0.00 3.58
2086 2390 3.678056 ATAGAACGACCTGCTTGACAA 57.322 42.857 0.00 0.00 0.00 3.18
2087 2391 2.325583 AGAACGACCTGCTTGACAAA 57.674 45.000 0.00 0.00 0.00 2.83
2150 2471 9.229784 CACTGAATTATGTGATTTATTCTGTGC 57.770 33.333 15.62 0.00 43.40 4.57
2165 2809 9.593134 TTTATTCTGTGCAGTTTGTTTAATGTT 57.407 25.926 0.00 0.00 0.00 2.71
2273 2930 5.991606 TCTATGTGTCTTCTGAACAGTTTGG 59.008 40.000 1.73 0.00 0.00 3.28
2293 2950 4.355437 TGGCAACATTTACGTTTGTTCTG 58.645 39.130 0.00 0.00 46.17 3.02
2300 2957 9.103048 CAACATTTACGTTTGTTCTGTATCTTC 57.897 33.333 0.00 0.00 33.93 2.87
2301 2958 7.803724 ACATTTACGTTTGTTCTGTATCTTCC 58.196 34.615 0.00 0.00 0.00 3.46
2324 2981 7.064229 TCCTCTTTGGGTTTAGTGTTTGTTAT 58.936 34.615 0.00 0.00 36.20 1.89
2332 2989 6.016108 GGGTTTAGTGTTTGTTATGCTGGTTA 60.016 38.462 0.00 0.00 0.00 2.85
2333 2990 7.427214 GGTTTAGTGTTTGTTATGCTGGTTAA 58.573 34.615 0.00 0.00 0.00 2.01
2334 2991 7.380333 GGTTTAGTGTTTGTTATGCTGGTTAAC 59.620 37.037 0.00 0.00 0.00 2.01
2335 2992 5.447624 AGTGTTTGTTATGCTGGTTAACC 57.552 39.130 18.27 18.27 0.00 2.85
2337 2994 5.361285 AGTGTTTGTTATGCTGGTTAACCAA 59.639 36.000 26.90 14.73 46.97 3.67
2338 2995 5.460748 GTGTTTGTTATGCTGGTTAACCAAC 59.539 40.000 26.90 22.97 46.97 3.77
2339 2996 5.361285 TGTTTGTTATGCTGGTTAACCAACT 59.639 36.000 26.90 16.45 46.97 3.16
2388 3054 3.083997 GGATCTGACGGCCAGGGT 61.084 66.667 2.24 0.00 43.12 4.34
2412 3078 9.606631 GGTGGGTCTGAATATAGAATATCATTC 57.393 37.037 0.00 0.00 0.00 2.67
2501 3167 7.871853 TCAATTTACTCTTGGTCTGCTTTAAC 58.128 34.615 0.00 0.00 0.00 2.01
2503 3169 2.767505 ACTCTTGGTCTGCTTTAACCG 58.232 47.619 0.00 0.00 38.45 4.44
2540 3207 6.605849 CAATGACATGTTCACCTTCTAACAG 58.394 40.000 0.00 0.00 38.87 3.16
2546 3213 6.706270 ACATGTTCACCTTCTAACAGTTACTG 59.294 38.462 11.21 11.21 38.87 2.74
2550 3217 5.145564 TCACCTTCTAACAGTTACTGACCT 58.854 41.667 20.07 5.58 35.18 3.85
2556 3315 9.751542 CCTTCTAACAGTTACTGACCTATATTG 57.248 37.037 20.07 1.10 35.18 1.90
2606 3365 2.297701 CCTTTACGGTATGCCATGCTT 58.702 47.619 0.00 0.00 34.09 3.91
2625 3384 9.976511 CCATGCTTGATTATGTGATTTATTCTT 57.023 29.630 0.22 0.00 0.00 2.52
2653 3412 4.829064 TGTTGGTTCAATGTACTCTTGC 57.171 40.909 0.00 0.00 0.00 4.01
2700 3459 4.761235 CATGGCATATTCACCTTGCTAG 57.239 45.455 0.00 0.00 36.62 3.42
3023 3803 4.142315 GGAAACAAGGACATCATCATGGTG 60.142 45.833 0.00 0.00 33.91 4.17
3203 3983 1.538047 TCATTGTTCTTGCTGAGGGC 58.462 50.000 0.00 0.00 42.22 5.19
3254 4034 0.773644 ACCCCAGCTTTGTCATGTCT 59.226 50.000 0.00 0.00 0.00 3.41
3276 4056 4.901197 TGCTCATTCACTAACCAGGTAA 57.099 40.909 0.00 0.00 0.00 2.85
3282 4065 6.878317 TCATTCACTAACCAGGTAAGATCAG 58.122 40.000 0.00 0.00 0.00 2.90
3297 4080 5.906113 AAGATCAGTGTGTAGTCTACTGG 57.094 43.478 11.28 0.00 41.54 4.00
3317 4101 6.398918 ACTGGCAACTAGTATGAGTTAACAG 58.601 40.000 8.61 13.47 42.37 3.16
3327 4115 9.457110 CTAGTATGAGTTAACAGCTGATACAAG 57.543 37.037 23.35 0.00 36.14 3.16
3332 4120 7.836842 TGAGTTAACAGCTGATACAAGTATGA 58.163 34.615 23.35 0.00 0.00 2.15
3360 4148 5.294734 ACATCCAATTTTGTGCTTTCCTT 57.705 34.783 0.00 0.00 0.00 3.36
3361 4149 5.683681 ACATCCAATTTTGTGCTTTCCTTT 58.316 33.333 0.00 0.00 0.00 3.11
3378 4166 2.941720 CCTTTAGGTCATTGCTCAGCTC 59.058 50.000 0.00 0.00 0.00 4.09
3438 4226 3.655777 AGAAGGTGTATGTTCTCCCCAAA 59.344 43.478 0.00 0.00 0.00 3.28
3525 4313 1.490574 AGGCCCAGTCTGAGTACATC 58.509 55.000 0.00 0.00 0.00 3.06
3579 4367 1.466360 GCGTACCGGTACTAGTGTGTG 60.466 57.143 35.31 21.35 34.04 3.82
3580 4368 1.806542 CGTACCGGTACTAGTGTGTGT 59.193 52.381 35.31 0.15 34.04 3.72
3581 4369 2.413239 CGTACCGGTACTAGTGTGTGTG 60.413 54.545 35.31 16.65 34.04 3.82
3706 4511 4.223032 TCTCTTAGGTGGAGGATTTGTCAC 59.777 45.833 0.00 0.00 0.00 3.67
3832 4638 6.260050 TGATTTGCCGGATATAGTTTGTCTTC 59.740 38.462 5.05 0.00 0.00 2.87
3857 4663 3.827008 TTCTACATGTCTGATGCTCCC 57.173 47.619 0.00 0.00 0.00 4.30
3858 4664 3.037851 TCTACATGTCTGATGCTCCCT 57.962 47.619 0.00 0.00 0.00 4.20
3859 4665 2.961741 TCTACATGTCTGATGCTCCCTC 59.038 50.000 0.00 0.00 0.00 4.30
3861 4667 0.108207 CATGTCTGATGCTCCCTCCC 59.892 60.000 0.00 0.00 0.00 4.30
3862 4668 0.326904 ATGTCTGATGCTCCCTCCCA 60.327 55.000 0.00 0.00 0.00 4.37
3863 4669 0.326904 TGTCTGATGCTCCCTCCCAT 60.327 55.000 0.00 0.00 0.00 4.00
3864 4670 0.396060 GTCTGATGCTCCCTCCCATC 59.604 60.000 0.00 0.00 38.60 3.51
3865 4671 0.030807 TCTGATGCTCCCTCCCATCA 60.031 55.000 3.64 3.64 43.89 3.07
3866 4672 0.108207 CTGATGCTCCCTCCCATCAC 59.892 60.000 0.00 0.00 41.94 3.06
3868 4674 0.548031 GATGCTCCCTCCCATCACAA 59.452 55.000 0.00 0.00 38.15 3.33
3897 4703 3.652387 AGGGATGCAAATTTGGAACCTTT 59.348 39.130 29.24 19.12 40.49 3.11
3915 4721 1.180029 TTAGGGTGTACGCTCTGACC 58.820 55.000 19.26 4.11 39.91 4.02
3917 4723 1.982938 GGGTGTACGCTCTGACCCT 60.983 63.158 6.35 0.00 44.24 4.34
3918 4724 0.682209 GGGTGTACGCTCTGACCCTA 60.682 60.000 6.35 0.00 44.24 3.53
3919 4725 0.455005 GGTGTACGCTCTGACCCTAC 59.545 60.000 6.35 0.00 0.00 3.18
3923 4729 3.631227 GTGTACGCTCTGACCCTACTTAT 59.369 47.826 0.00 0.00 0.00 1.73
3924 4730 4.818546 GTGTACGCTCTGACCCTACTTATA 59.181 45.833 0.00 0.00 0.00 0.98
3925 4731 5.297776 GTGTACGCTCTGACCCTACTTATAA 59.702 44.000 0.00 0.00 0.00 0.98
3926 4732 6.016443 GTGTACGCTCTGACCCTACTTATAAT 60.016 42.308 0.00 0.00 0.00 1.28
3927 4733 6.548622 TGTACGCTCTGACCCTACTTATAATT 59.451 38.462 0.00 0.00 0.00 1.40
3929 4735 7.592885 ACGCTCTGACCCTACTTATAATTAA 57.407 36.000 0.00 0.00 0.00 1.40
3930 4736 8.191534 ACGCTCTGACCCTACTTATAATTAAT 57.808 34.615 0.00 0.00 0.00 1.40
4005 4811 5.845391 TTTGTTCAACTAAAGAGGGTTGG 57.155 39.130 0.00 0.00 41.91 3.77
4032 4838 3.118956 TGCCCTCAACGTTTCAAATTTGT 60.119 39.130 17.47 0.00 0.00 2.83
4033 4839 3.245048 GCCCTCAACGTTTCAAATTTGTG 59.755 43.478 17.47 7.83 0.00 3.33
4040 4846 7.313646 TCAACGTTTCAAATTTGTGTTCCTAA 58.686 30.769 17.47 0.38 0.00 2.69
4052 4858 9.927668 AATTTGTGTTCCTAAAATTATCTGTGG 57.072 29.630 0.00 0.00 33.02 4.17
4053 4859 8.472007 TTTGTGTTCCTAAAATTATCTGTGGT 57.528 30.769 0.00 0.00 0.00 4.16
4055 4861 8.472007 TGTGTTCCTAAAATTATCTGTGGTTT 57.528 30.769 0.00 0.00 0.00 3.27
4057 4863 9.406828 GTGTTCCTAAAATTATCTGTGGTTTTC 57.593 33.333 0.00 0.00 0.00 2.29
4058 4864 9.137459 TGTTCCTAAAATTATCTGTGGTTTTCA 57.863 29.630 0.00 0.00 0.00 2.69
4059 4865 9.974980 GTTCCTAAAATTATCTGTGGTTTTCAA 57.025 29.630 0.00 0.00 0.00 2.69
4061 4867 9.974980 TCCTAAAATTATCTGTGGTTTTCAAAC 57.025 29.630 0.00 0.00 38.17 2.93
4062 4868 9.981114 CCTAAAATTATCTGTGGTTTTCAAACT 57.019 29.630 2.55 0.00 38.89 2.66
4067 4873 7.739498 TTATCTGTGGTTTTCAAACTAGTCC 57.261 36.000 0.00 0.00 38.89 3.85
4068 4874 5.105567 TCTGTGGTTTTCAAACTAGTCCA 57.894 39.130 0.00 0.00 38.89 4.02
4069 4875 5.690865 TCTGTGGTTTTCAAACTAGTCCAT 58.309 37.500 0.00 0.00 38.89 3.41
4070 4876 5.530915 TCTGTGGTTTTCAAACTAGTCCATG 59.469 40.000 0.00 0.00 38.89 3.66
4071 4877 4.037446 TGTGGTTTTCAAACTAGTCCATGC 59.963 41.667 0.00 0.00 38.89 4.06
4072 4878 3.252215 TGGTTTTCAAACTAGTCCATGCG 59.748 43.478 0.00 0.00 38.89 4.73
4073 4879 3.252458 GGTTTTCAAACTAGTCCATGCGT 59.748 43.478 0.00 0.00 38.89 5.24
4074 4880 4.453136 GGTTTTCAAACTAGTCCATGCGTA 59.547 41.667 0.00 0.00 38.89 4.42
4075 4881 5.390567 GGTTTTCAAACTAGTCCATGCGTAG 60.391 44.000 0.00 0.00 38.89 3.51
4076 4882 4.530710 TTCAAACTAGTCCATGCGTAGT 57.469 40.909 0.00 0.00 0.00 2.73
4077 4883 4.530710 TCAAACTAGTCCATGCGTAGTT 57.469 40.909 0.00 6.73 38.39 2.24
4078 4884 4.491676 TCAAACTAGTCCATGCGTAGTTC 58.508 43.478 0.00 0.00 36.25 3.01
4079 4885 4.219944 TCAAACTAGTCCATGCGTAGTTCT 59.780 41.667 0.00 3.06 36.25 3.01
4080 4886 4.803098 AACTAGTCCATGCGTAGTTCTT 57.197 40.909 0.00 0.00 32.67 2.52
4081 4887 4.111375 ACTAGTCCATGCGTAGTTCTTG 57.889 45.455 0.00 0.00 0.00 3.02
4082 4888 1.726853 AGTCCATGCGTAGTTCTTGC 58.273 50.000 0.00 0.00 0.00 4.01
4083 4889 1.001974 AGTCCATGCGTAGTTCTTGCA 59.998 47.619 0.00 0.00 43.67 4.08
4084 4890 1.804151 GTCCATGCGTAGTTCTTGCAA 59.196 47.619 0.00 0.00 42.65 4.08
4085 4891 2.420022 GTCCATGCGTAGTTCTTGCAAT 59.580 45.455 0.00 0.00 42.65 3.56
4086 4892 2.419673 TCCATGCGTAGTTCTTGCAATG 59.580 45.455 0.00 0.00 42.65 2.82
4087 4893 2.478370 CCATGCGTAGTTCTTGCAATGG 60.478 50.000 0.00 0.00 42.65 3.16
4088 4894 1.164411 TGCGTAGTTCTTGCAATGGG 58.836 50.000 0.00 0.00 35.33 4.00
4089 4895 0.179163 GCGTAGTTCTTGCAATGGGC 60.179 55.000 0.00 0.00 45.13 5.36
4090 4896 1.453155 CGTAGTTCTTGCAATGGGCT 58.547 50.000 0.00 0.00 45.15 5.19
4091 4897 1.131126 CGTAGTTCTTGCAATGGGCTG 59.869 52.381 0.00 0.00 45.15 4.85
4092 4898 2.436417 GTAGTTCTTGCAATGGGCTGA 58.564 47.619 0.00 0.00 45.15 4.26
4093 4899 1.542492 AGTTCTTGCAATGGGCTGAG 58.458 50.000 0.00 0.00 45.15 3.35
4094 4900 0.108945 GTTCTTGCAATGGGCTGAGC 60.109 55.000 0.00 0.00 45.15 4.26
4095 4901 0.251474 TTCTTGCAATGGGCTGAGCT 60.251 50.000 3.72 0.00 45.15 4.09
4096 4902 0.679002 TCTTGCAATGGGCTGAGCTC 60.679 55.000 6.82 6.82 45.15 4.09
4097 4903 1.664321 CTTGCAATGGGCTGAGCTCC 61.664 60.000 12.15 3.14 45.15 4.70
4098 4904 2.044650 GCAATGGGCTGAGCTCCA 60.045 61.111 12.15 15.31 40.25 3.86
4099 4905 1.679977 GCAATGGGCTGAGCTCCAA 60.680 57.895 16.58 0.00 40.25 3.53
4100 4906 1.664321 GCAATGGGCTGAGCTCCAAG 61.664 60.000 16.58 13.38 40.25 3.61
4101 4907 1.379576 AATGGGCTGAGCTCCAAGC 60.380 57.895 15.88 15.88 42.84 4.01
4112 4918 2.046283 GCTCCAAGCGTTTGTTTACC 57.954 50.000 11.22 0.00 32.21 2.85
4118 4924 1.728074 GCGTTTGTTTACCTGCGCC 60.728 57.895 4.18 0.00 39.11 6.53
4129 4935 1.898574 CCTGCGCCAGTTTTCAGGT 60.899 57.895 4.18 0.00 40.79 4.00
4130 4936 1.455383 CCTGCGCCAGTTTTCAGGTT 61.455 55.000 4.18 0.00 40.79 3.50
4131 4937 0.040067 CTGCGCCAGTTTTCAGGTTC 60.040 55.000 4.18 0.00 0.00 3.62
4134 4940 0.821711 CGCCAGTTTTCAGGTTCCCA 60.822 55.000 0.00 0.00 0.00 4.37
4138 4944 2.965147 CCAGTTTTCAGGTTCCCATTGT 59.035 45.455 0.00 0.00 0.00 2.71
4139 4945 3.387699 CCAGTTTTCAGGTTCCCATTGTT 59.612 43.478 0.00 0.00 0.00 2.83
4140 4946 4.586841 CCAGTTTTCAGGTTCCCATTGTTA 59.413 41.667 0.00 0.00 0.00 2.41
4141 4947 5.508994 CCAGTTTTCAGGTTCCCATTGTTAC 60.509 44.000 0.00 0.00 0.00 2.50
4142 4948 5.068460 CAGTTTTCAGGTTCCCATTGTTACA 59.932 40.000 0.00 0.00 0.00 2.41
4143 4949 5.659079 AGTTTTCAGGTTCCCATTGTTACAA 59.341 36.000 0.00 0.00 0.00 2.41
4144 4950 6.155393 AGTTTTCAGGTTCCCATTGTTACAAA 59.845 34.615 0.66 0.00 0.00 2.83
4145 4951 5.523438 TTCAGGTTCCCATTGTTACAAAC 57.477 39.130 0.66 0.00 0.00 2.93
4146 4952 3.892588 TCAGGTTCCCATTGTTACAAACC 59.107 43.478 0.66 4.84 37.10 3.27
4147 4953 3.006430 CAGGTTCCCATTGTTACAAACCC 59.994 47.826 11.05 2.41 37.46 4.11
4148 4954 2.029739 GGTTCCCATTGTTACAAACCCG 60.030 50.000 0.66 0.00 31.95 5.28
4149 4955 2.624364 GTTCCCATTGTTACAAACCCGT 59.376 45.455 0.66 0.00 0.00 5.28
4150 4956 2.946785 TCCCATTGTTACAAACCCGTT 58.053 42.857 0.66 0.00 0.00 4.44
4151 4957 2.623889 TCCCATTGTTACAAACCCGTTG 59.376 45.455 0.66 0.00 43.43 4.10
4152 4958 2.623889 CCCATTGTTACAAACCCGTTGA 59.376 45.455 0.66 0.00 39.87 3.18
4153 4959 3.068307 CCCATTGTTACAAACCCGTTGAA 59.932 43.478 0.66 0.00 39.87 2.69
4154 4960 4.045783 CCATTGTTACAAACCCGTTGAAC 58.954 43.478 0.66 0.00 39.87 3.18
4172 4978 0.034863 ACACAAAACGGGTCCTGTGT 60.035 50.000 3.42 6.06 45.69 3.72
4185 4991 1.745890 CTGTGTGTCGAACCAGGGA 59.254 57.895 0.00 0.00 0.00 4.20
4204 5010 2.416893 GGACTGCAGTTCCGAAAAGATC 59.583 50.000 22.65 2.84 0.00 2.75
4206 5012 3.476552 ACTGCAGTTCCGAAAAGATCAA 58.523 40.909 15.25 0.00 0.00 2.57
4235 5044 7.363443 CCTCTGGTTTAAAAGGAAAAGTGAACA 60.363 37.037 0.00 0.00 0.00 3.18
4241 5050 9.308318 GTTTAAAAGGAAAAGTGAACAATAGCA 57.692 29.630 0.00 0.00 0.00 3.49
4266 5075 9.533253 CAAAAGTGAAGGAAACACATAGAAATT 57.467 29.630 0.00 0.00 40.25 1.82
4290 5099 7.775397 TTATAGTAAGTTTTCGTATGGTGGC 57.225 36.000 0.00 0.00 0.00 5.01
4291 5100 4.010667 AGTAAGTTTTCGTATGGTGGCA 57.989 40.909 0.00 0.00 0.00 4.92
4292 5101 3.749609 AGTAAGTTTTCGTATGGTGGCAC 59.250 43.478 9.70 9.70 0.00 5.01
4293 5102 2.561478 AGTTTTCGTATGGTGGCACT 57.439 45.000 18.45 0.40 0.00 4.40
4294 5103 3.688694 AGTTTTCGTATGGTGGCACTA 57.311 42.857 18.45 12.70 0.00 2.74
4295 5104 4.216411 AGTTTTCGTATGGTGGCACTAT 57.784 40.909 20.54 20.54 0.00 2.12
4296 5105 4.585879 AGTTTTCGTATGGTGGCACTATT 58.414 39.130 21.85 7.23 0.00 1.73
4297 5106 4.634443 AGTTTTCGTATGGTGGCACTATTC 59.366 41.667 21.85 15.46 0.00 1.75
4298 5107 3.897141 TTCGTATGGTGGCACTATTCA 57.103 42.857 21.85 9.28 0.00 2.57
4299 5108 3.897141 TCGTATGGTGGCACTATTCAA 57.103 42.857 21.85 0.00 0.00 2.69
4300 5109 3.792401 TCGTATGGTGGCACTATTCAAG 58.208 45.455 21.85 7.50 0.00 3.02
4301 5110 3.449377 TCGTATGGTGGCACTATTCAAGA 59.551 43.478 21.85 9.72 0.00 3.02
4302 5111 3.555956 CGTATGGTGGCACTATTCAAGAC 59.444 47.826 21.85 12.11 0.00 3.01
4303 5112 4.680708 CGTATGGTGGCACTATTCAAGACT 60.681 45.833 21.85 0.00 0.00 3.24
4304 5113 3.788227 TGGTGGCACTATTCAAGACTT 57.212 42.857 18.45 0.00 0.00 3.01
4305 5114 4.098914 TGGTGGCACTATTCAAGACTTT 57.901 40.909 18.45 0.00 0.00 2.66
4306 5115 3.820467 TGGTGGCACTATTCAAGACTTTG 59.180 43.478 18.45 0.00 35.57 2.77
4307 5116 3.191371 GGTGGCACTATTCAAGACTTTGG 59.809 47.826 18.45 0.00 34.97 3.28
4308 5117 3.191371 GTGGCACTATTCAAGACTTTGGG 59.809 47.826 11.13 0.00 34.97 4.12
4309 5118 3.181434 TGGCACTATTCAAGACTTTGGGT 60.181 43.478 0.00 0.00 34.97 4.51
4310 5119 3.440522 GGCACTATTCAAGACTTTGGGTC 59.559 47.826 0.00 0.00 44.80 4.46
4311 5120 3.440522 GCACTATTCAAGACTTTGGGTCC 59.559 47.826 0.00 0.00 45.54 4.46
4312 5121 4.651778 CACTATTCAAGACTTTGGGTCCA 58.348 43.478 0.00 0.00 45.54 4.02
4313 5122 5.070001 CACTATTCAAGACTTTGGGTCCAA 58.930 41.667 0.00 0.00 45.54 3.53
4314 5123 5.534654 CACTATTCAAGACTTTGGGTCCAAA 59.465 40.000 13.75 13.75 45.54 3.28
4321 5130 3.119225 TTTGGGTCCAAAGGAACGG 57.881 52.632 10.80 0.00 41.03 4.44
4322 5131 0.551879 TTTGGGTCCAAAGGAACGGA 59.448 50.000 10.80 0.00 41.03 4.69
4323 5132 0.551879 TTGGGTCCAAAGGAACGGAA 59.448 50.000 0.00 0.00 41.03 4.30
4324 5133 0.109723 TGGGTCCAAAGGAACGGAAG 59.890 55.000 0.00 0.00 41.03 3.46
4327 5136 2.578786 GGTCCAAAGGAACGGAAGAAA 58.421 47.619 0.00 0.00 31.38 2.52
4348 5157 6.487668 AGAAATTTTCCTTTGGCCTCAATTTG 59.512 34.615 3.32 0.00 32.28 2.32
4400 5209 7.056635 TCCACTTGGATCTCTTTCCATATTTC 58.943 38.462 0.00 0.00 45.08 2.17
4401 5210 7.059156 CCACTTGGATCTCTTTCCATATTTCT 58.941 38.462 0.00 0.00 45.08 2.52
4402 5211 8.213679 CCACTTGGATCTCTTTCCATATTTCTA 58.786 37.037 0.00 0.00 45.08 2.10
4403 5212 9.790344 CACTTGGATCTCTTTCCATATTTCTAT 57.210 33.333 0.00 0.00 45.08 1.98
4404 5213 9.790344 ACTTGGATCTCTTTCCATATTTCTATG 57.210 33.333 0.00 0.00 45.08 2.23
4409 5218 9.651913 GATCTCTTTCCATATTTCTATGAGACC 57.348 37.037 0.00 0.00 37.51 3.85
4412 5221 8.018537 TCTTTCCATATTTCTATGAGACCGAA 57.981 34.615 0.00 0.00 37.51 4.30
4426 5235 1.818674 GACCGAATCCTTGTTGGCATT 59.181 47.619 0.00 0.00 35.26 3.56
4434 5243 7.040755 CCGAATCCTTGTTGGCATTATAACATA 60.041 37.037 0.00 0.00 36.75 2.29
4435 5244 8.514594 CGAATCCTTGTTGGCATTATAACATAT 58.485 33.333 0.00 0.00 36.75 1.78
4438 5247 8.177119 TCCTTGTTGGCATTATAACATATTCC 57.823 34.615 0.00 0.00 36.75 3.01
4439 5248 7.232534 TCCTTGTTGGCATTATAACATATTCCC 59.767 37.037 0.00 0.00 36.75 3.97
4440 5249 7.233348 CCTTGTTGGCATTATAACATATTCCCT 59.767 37.037 0.00 0.00 36.75 4.20
4441 5250 7.759489 TGTTGGCATTATAACATATTCCCTC 57.241 36.000 0.00 0.00 32.30 4.30
4442 5251 7.293828 TGTTGGCATTATAACATATTCCCTCA 58.706 34.615 0.00 0.00 32.30 3.86
4443 5252 7.448161 TGTTGGCATTATAACATATTCCCTCAG 59.552 37.037 0.00 0.00 32.30 3.35
4444 5253 7.090319 TGGCATTATAACATATTCCCTCAGT 57.910 36.000 0.00 0.00 0.00 3.41
4445 5254 6.942005 TGGCATTATAACATATTCCCTCAGTG 59.058 38.462 0.00 0.00 0.00 3.66
4446 5255 7.168219 GGCATTATAACATATTCCCTCAGTGA 58.832 38.462 0.00 0.00 0.00 3.41
4447 5256 7.831193 GGCATTATAACATATTCCCTCAGTGAT 59.169 37.037 0.00 0.00 0.00 3.06
4448 5257 8.887717 GCATTATAACATATTCCCTCAGTGATC 58.112 37.037 0.00 0.00 0.00 2.92
4454 5263 6.516718 ACATATTCCCTCAGTGATCTAAACG 58.483 40.000 0.00 0.00 0.00 3.60
4455 5264 2.961526 TCCCTCAGTGATCTAAACGC 57.038 50.000 0.00 0.00 0.00 4.84
4456 5265 2.457598 TCCCTCAGTGATCTAAACGCT 58.542 47.619 0.00 0.00 0.00 5.07
4457 5266 2.427453 TCCCTCAGTGATCTAAACGCTC 59.573 50.000 0.00 0.00 0.00 5.03
4458 5267 2.428890 CCCTCAGTGATCTAAACGCTCT 59.571 50.000 0.00 0.00 0.00 4.09
4459 5268 3.118956 CCCTCAGTGATCTAAACGCTCTT 60.119 47.826 0.00 0.00 0.00 2.85
4460 5269 4.098044 CCCTCAGTGATCTAAACGCTCTTA 59.902 45.833 0.00 0.00 0.00 2.10
4461 5270 5.221342 CCCTCAGTGATCTAAACGCTCTTAT 60.221 44.000 0.00 0.00 0.00 1.73
4462 5271 6.016192 CCCTCAGTGATCTAAACGCTCTTATA 60.016 42.308 0.00 0.00 0.00 0.98
4463 5272 7.309499 CCCTCAGTGATCTAAACGCTCTTATAT 60.309 40.741 0.00 0.00 0.00 0.86
4464 5273 8.085296 CCTCAGTGATCTAAACGCTCTTATATT 58.915 37.037 0.00 0.00 0.00 1.28
4465 5274 9.469807 CTCAGTGATCTAAACGCTCTTATATTT 57.530 33.333 0.00 0.00 0.00 1.40
4466 5275 9.817809 TCAGTGATCTAAACGCTCTTATATTTT 57.182 29.630 0.00 0.00 0.00 1.82
4493 5302 6.667558 ACACAGGGAGTAGCTAATTATACC 57.332 41.667 0.00 0.00 0.00 2.73
4505 5314 9.803507 GTAGCTAATTATACCTTTTTATGGGGT 57.196 33.333 0.00 0.00 37.16 4.95
4506 5315 8.935614 AGCTAATTATACCTTTTTATGGGGTC 57.064 34.615 0.00 0.00 34.86 4.46
4507 5316 8.733808 AGCTAATTATACCTTTTTATGGGGTCT 58.266 33.333 0.00 0.00 34.86 3.85
4508 5317 8.793592 GCTAATTATACCTTTTTATGGGGTCTG 58.206 37.037 0.00 0.00 34.86 3.51
4509 5318 7.597288 AATTATACCTTTTTATGGGGTCTGC 57.403 36.000 0.00 0.00 34.86 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 54 1.466167 GGATCGATGGTATGCATGTGC 59.534 52.381 10.16 0.00 42.50 4.57
52 56 3.196469 CCTAGGATCGATGGTATGCATGT 59.804 47.826 10.16 0.00 0.00 3.21
67 71 1.783365 GGATTGAAAGGCCCCTAGGAT 59.217 52.381 11.48 0.00 33.47 3.24
72 76 4.294492 AGGGATTGAAAGGCCCCT 57.706 55.556 0.00 0.00 44.04 4.79
80 84 7.385491 AGCCCTATTCTACATCAGGGATTGAA 61.385 42.308 9.71 0.00 44.55 2.69
83 87 4.507342 AGCCCTATTCTACATCAGGGATT 58.493 43.478 9.71 0.00 44.55 3.01
94 98 6.210522 AGGAGGTTAAGAAAGCCCTATTCTA 58.789 40.000 0.00 0.00 36.14 2.10
96 100 5.131308 AGAGGAGGTTAAGAAAGCCCTATTC 59.869 44.000 0.00 0.00 35.33 1.75
122 126 5.372343 TCCTTTGACACAGCCATATACAT 57.628 39.130 0.00 0.00 0.00 2.29
132 136 5.879223 AGCTATGAAGAATCCTTTGACACAG 59.121 40.000 0.00 0.00 31.62 3.66
143 147 7.434897 CGCCTATATCAGAAGCTATGAAGAATC 59.565 40.741 5.71 0.00 0.00 2.52
147 151 5.105554 ACCGCCTATATCAGAAGCTATGAAG 60.106 44.000 5.71 0.16 0.00 3.02
149 153 4.344978 ACCGCCTATATCAGAAGCTATGA 58.655 43.478 4.18 4.18 0.00 2.15
164 168 3.965379 TGAACAAAGTCATACCGCCTA 57.035 42.857 0.00 0.00 0.00 3.93
166 170 2.550606 TGTTGAACAAAGTCATACCGCC 59.449 45.455 0.00 0.00 0.00 6.13
169 173 5.616866 CGGATGTGTTGAACAAAGTCATACC 60.617 44.000 0.00 3.09 43.61 2.73
185 189 4.008074 AGTTGAACAGATTCGGATGTGT 57.992 40.909 0.00 0.00 41.12 3.72
213 218 7.095607 CGGATTATTTGCAGGTCTATTCACTAC 60.096 40.741 0.00 0.00 0.00 2.73
221 226 5.304357 TCATCTCGGATTATTTGCAGGTCTA 59.696 40.000 0.00 0.00 0.00 2.59
225 230 5.278169 CCTTTCATCTCGGATTATTTGCAGG 60.278 44.000 0.00 0.00 0.00 4.85
238 244 6.036470 GCCCTTTTTAAATCCTTTCATCTCG 58.964 40.000 0.00 0.00 0.00 4.04
311 320 6.812998 TCGATTCCCGTGATTTTAGAATACT 58.187 36.000 0.00 0.00 39.75 2.12
342 351 1.005805 ACCATGGCATTGCAGTCCTAA 59.994 47.619 13.04 0.00 0.00 2.69
348 359 2.953648 TGAGATAACCATGGCATTGCAG 59.046 45.455 13.04 0.00 0.00 4.41
356 367 6.288294 TCGTTTAGGATTGAGATAACCATGG 58.712 40.000 11.19 11.19 0.00 3.66
363 374 7.597288 TCAAGGATCGTTTAGGATTGAGATA 57.403 36.000 0.00 0.00 0.00 1.98
378 389 4.735985 TGCAATCAAACAATCAAGGATCG 58.264 39.130 0.00 0.00 0.00 3.69
406 417 9.369904 CTCTTTGAAAGAATTCCTTGTTTTTCA 57.630 29.630 9.15 11.96 37.02 2.69
416 427 5.847304 AGCAAACCTCTTTGAAAGAATTCC 58.153 37.500 9.15 2.73 39.43 3.01
499 511 6.912591 GGTTGTTTGATTCATACGATTGATCC 59.087 38.462 0.00 0.00 0.00 3.36
548 561 6.001449 TGGAATTTCCACGGATTAGAATCT 57.999 37.500 14.24 0.00 42.67 2.40
642 656 9.710900 GGAGACAAAAATACCAATTTCTTTCAT 57.289 29.630 0.00 0.00 34.12 2.57
708 722 4.779489 TCCCCTCCTAGTTAAACCTACAAC 59.221 45.833 0.00 0.00 0.00 3.32
757 803 5.365403 TGGCAAAATTACGAATCGAAACT 57.635 34.783 10.55 0.00 0.00 2.66
912 958 2.927856 GGTTTGGGGGCTTTGGGG 60.928 66.667 0.00 0.00 0.00 4.96
913 959 2.927856 GGGTTTGGGGGCTTTGGG 60.928 66.667 0.00 0.00 0.00 4.12
914 960 1.913262 GAGGGTTTGGGGGCTTTGG 60.913 63.158 0.00 0.00 0.00 3.28
915 961 0.900182 GAGAGGGTTTGGGGGCTTTG 60.900 60.000 0.00 0.00 0.00 2.77
916 962 1.465172 GAGAGGGTTTGGGGGCTTT 59.535 57.895 0.00 0.00 0.00 3.51
917 963 2.548547 GGAGAGGGTTTGGGGGCTT 61.549 63.158 0.00 0.00 0.00 4.35
918 964 2.941583 GGAGAGGGTTTGGGGGCT 60.942 66.667 0.00 0.00 0.00 5.19
919 965 4.062032 GGGAGAGGGTTTGGGGGC 62.062 72.222 0.00 0.00 0.00 5.80
920 966 1.935931 ATGGGAGAGGGTTTGGGGG 60.936 63.158 0.00 0.00 0.00 5.40
961 1007 1.337118 GATCTAGCAGAGGTGGAGGG 58.663 60.000 0.00 0.00 0.00 4.30
967 1019 2.703007 GTGGATTGGATCTAGCAGAGGT 59.297 50.000 0.00 0.00 0.00 3.85
975 1031 4.111577 AGAAGGTTGGTGGATTGGATCTA 58.888 43.478 0.00 0.00 0.00 1.98
1101 1359 3.564218 ATGAGGCCCGGCATCTCC 61.564 66.667 23.74 0.00 40.21 3.71
1338 1596 0.966370 ACCACCAGTACTCCTCGAGC 60.966 60.000 6.99 0.00 32.04 5.03
1726 1985 3.568007 TCTGAAATGGAAAACGGGAACAG 59.432 43.478 0.00 0.00 0.00 3.16
1727 1986 3.556999 TCTGAAATGGAAAACGGGAACA 58.443 40.909 0.00 0.00 0.00 3.18
1867 2142 0.250640 CTGCTTCACCACTGAGCCTT 60.251 55.000 0.00 0.00 0.00 4.35
1913 2188 5.124936 AGACACTAAACCCACAGACAAAAAC 59.875 40.000 0.00 0.00 0.00 2.43
1915 2190 4.638421 CAGACACTAAACCCACAGACAAAA 59.362 41.667 0.00 0.00 0.00 2.44
2033 2337 1.136252 CATCGTTTGTCAAGCAGGTCG 60.136 52.381 0.14 0.00 0.00 4.79
2043 2347 3.604875 TTAGACCCTCCATCGTTTGTC 57.395 47.619 0.00 0.00 0.00 3.18
2049 2353 6.150641 TCGTTCTATAATTAGACCCTCCATCG 59.849 42.308 0.00 0.00 34.15 3.84
2050 2354 7.314393 GTCGTTCTATAATTAGACCCTCCATC 58.686 42.308 0.00 0.00 34.15 3.51
2051 2355 6.210984 GGTCGTTCTATAATTAGACCCTCCAT 59.789 42.308 7.71 0.00 41.49 3.41
2052 2356 5.537674 GGTCGTTCTATAATTAGACCCTCCA 59.462 44.000 7.71 0.00 41.49 3.86
2053 2357 5.774184 AGGTCGTTCTATAATTAGACCCTCC 59.226 44.000 13.10 0.97 46.68 4.30
2054 2358 6.679843 CAGGTCGTTCTATAATTAGACCCTC 58.320 44.000 13.10 0.00 46.68 4.30
2055 2359 5.010820 GCAGGTCGTTCTATAATTAGACCCT 59.989 44.000 13.10 2.43 46.68 4.34
2056 2360 5.010820 AGCAGGTCGTTCTATAATTAGACCC 59.989 44.000 13.10 3.05 46.68 4.46
2057 2361 6.086785 AGCAGGTCGTTCTATAATTAGACC 57.913 41.667 10.05 10.05 46.06 3.85
2058 2362 7.167801 GTCAAGCAGGTCGTTCTATAATTAGAC 59.832 40.741 0.00 0.00 34.15 2.59
2059 2363 7.147966 TGTCAAGCAGGTCGTTCTATAATTAGA 60.148 37.037 0.00 0.00 32.50 2.10
2060 2364 6.978659 TGTCAAGCAGGTCGTTCTATAATTAG 59.021 38.462 0.00 0.00 0.00 1.73
2061 2365 6.869695 TGTCAAGCAGGTCGTTCTATAATTA 58.130 36.000 0.00 0.00 0.00 1.40
2062 2366 5.730550 TGTCAAGCAGGTCGTTCTATAATT 58.269 37.500 0.00 0.00 0.00 1.40
2063 2367 5.339008 TGTCAAGCAGGTCGTTCTATAAT 57.661 39.130 0.00 0.00 0.00 1.28
2064 2368 4.794278 TGTCAAGCAGGTCGTTCTATAA 57.206 40.909 0.00 0.00 0.00 0.98
2065 2369 4.794278 TTGTCAAGCAGGTCGTTCTATA 57.206 40.909 0.00 0.00 0.00 1.31
2066 2370 3.678056 TTGTCAAGCAGGTCGTTCTAT 57.322 42.857 0.00 0.00 0.00 1.98
2067 2371 3.462483 TTTGTCAAGCAGGTCGTTCTA 57.538 42.857 0.00 0.00 0.00 2.10
2068 2372 2.325583 TTTGTCAAGCAGGTCGTTCT 57.674 45.000 0.00 0.00 0.00 3.01
2069 2373 3.626028 AATTTGTCAAGCAGGTCGTTC 57.374 42.857 0.00 0.00 0.00 3.95
2070 2374 4.385358 AAAATTTGTCAAGCAGGTCGTT 57.615 36.364 0.00 0.00 0.00 3.85
2071 2375 5.705609 ATAAAATTTGTCAAGCAGGTCGT 57.294 34.783 0.00 0.00 0.00 4.34
2072 2376 7.754924 ACATAATAAAATTTGTCAAGCAGGTCG 59.245 33.333 0.00 0.00 0.00 4.79
2073 2377 8.986477 ACATAATAAAATTTGTCAAGCAGGTC 57.014 30.769 0.00 0.00 0.00 3.85
2077 2381 9.920133 TGCTAACATAATAAAATTTGTCAAGCA 57.080 25.926 9.75 9.75 38.03 3.91
2150 2471 9.956797 CAAAACAAGAGAACATTAAACAAACTG 57.043 29.630 0.00 0.00 0.00 3.16
2165 2809 8.966868 ACCTTCTGATTAAAACAAAACAAGAGA 58.033 29.630 0.00 0.00 0.00 3.10
2243 2900 8.031864 ACTGTTCAGAAGACACATAGATTAGTG 58.968 37.037 6.83 0.00 41.40 2.74
2256 2913 3.128589 TGTTGCCAAACTGTTCAGAAGAC 59.871 43.478 6.83 0.00 37.19 3.01
2273 2930 7.075741 AGATACAGAACAAACGTAAATGTTGC 58.924 34.615 16.14 9.58 39.73 4.17
2278 2935 8.095169 AGAGGAAGATACAGAACAAACGTAAAT 58.905 33.333 0.00 0.00 0.00 1.40
2284 2941 6.072452 CCCAAAGAGGAAGATACAGAACAAAC 60.072 42.308 0.00 0.00 41.22 2.93
2285 2942 6.003950 CCCAAAGAGGAAGATACAGAACAAA 58.996 40.000 0.00 0.00 41.22 2.83
2290 2947 5.843019 AAACCCAAAGAGGAAGATACAGA 57.157 39.130 0.00 0.00 41.22 3.41
2293 2950 6.473758 ACACTAAACCCAAAGAGGAAGATAC 58.526 40.000 0.00 0.00 41.22 2.24
2300 2957 5.592104 AACAAACACTAAACCCAAAGAGG 57.408 39.130 0.00 0.00 37.03 3.69
2301 2958 6.640907 GCATAACAAACACTAAACCCAAAGAG 59.359 38.462 0.00 0.00 0.00 2.85
2361 3027 2.086869 CCGTCAGATCCAGCAAACATT 58.913 47.619 0.00 0.00 0.00 2.71
2368 3034 2.202987 CTGGCCGTCAGATCCAGC 60.203 66.667 0.00 0.00 46.18 4.85
2388 3054 9.255029 TCGAATGATATTCTATATTCAGACCCA 57.745 33.333 0.00 0.00 31.56 4.51
2412 3078 4.464112 CATGTCATAATGCTTCATGCTCG 58.536 43.478 0.00 0.00 43.37 5.03
2501 3167 3.689161 TGTCATTGCATTCTACCTTTCGG 59.311 43.478 0.00 0.00 0.00 4.30
2503 3169 6.199937 ACATGTCATTGCATTCTACCTTTC 57.800 37.500 0.00 0.00 0.00 2.62
2625 3384 9.787435 AAGAGTACATTGAACCAACAATTACTA 57.213 29.630 0.00 0.00 38.25 1.82
2636 3395 4.319177 ACAGAGCAAGAGTACATTGAACC 58.681 43.478 13.33 3.45 0.00 3.62
2653 3412 9.766277 GCATTCTAACTTCTGATTAAAACAGAG 57.234 33.333 12.95 10.73 43.67 3.35
3023 3803 3.198635 TCTTCATCTTCCTCATGTGGTCC 59.801 47.826 13.34 0.00 0.00 4.46
3203 3983 0.036010 AGCCAAGGTTCATCAGACGG 60.036 55.000 0.00 0.00 0.00 4.79
3254 4034 3.788227 ACCTGGTTAGTGAATGAGCAA 57.212 42.857 0.00 0.00 0.00 3.91
3276 4056 3.697045 GCCAGTAGACTACACACTGATCT 59.303 47.826 14.95 0.00 41.80 2.75
3282 4065 3.662247 AGTTGCCAGTAGACTACACAC 57.338 47.619 14.95 3.98 0.00 3.82
3297 4080 6.100004 TCAGCTGTTAACTCATACTAGTTGC 58.900 40.000 14.67 0.00 39.95 4.17
3317 4101 8.552034 GGATGTTAACTTCATACTTGTATCAGC 58.448 37.037 19.69 0.00 0.00 4.26
3327 4115 8.647226 GCACAAAATTGGATGTTAACTTCATAC 58.353 33.333 19.69 2.41 0.00 2.39
3332 4120 7.226523 GGAAAGCACAAAATTGGATGTTAACTT 59.773 33.333 7.22 0.00 0.00 2.66
3360 4148 1.824852 TCGAGCTGAGCAATGACCTAA 59.175 47.619 7.39 0.00 0.00 2.69
3361 4149 1.406898 CTCGAGCTGAGCAATGACCTA 59.593 52.381 7.39 0.00 38.03 3.08
3378 4166 1.941668 GCCTTCTCCTTCCACAACTCG 60.942 57.143 0.00 0.00 0.00 4.18
3438 4226 2.255430 GACCTTCTCGTCGAGGTGT 58.745 57.895 21.63 15.44 34.38 4.16
3581 4369 1.801913 CGCTAGTCGTGCTGGACAC 60.802 63.158 9.78 0.00 46.45 3.67
3676 4478 2.632996 CCTCCACCTAAGAGAACACACA 59.367 50.000 0.00 0.00 32.86 3.72
3677 4479 2.897969 TCCTCCACCTAAGAGAACACAC 59.102 50.000 0.00 0.00 32.86 3.82
3832 4638 6.426328 GGGAGCATCAGACATGTAGAATAAAG 59.574 42.308 0.00 0.00 36.25 1.85
3857 4663 5.630415 TCCCTAGTAAATTGTGATGGGAG 57.370 43.478 0.00 0.00 37.56 4.30
3858 4664 5.690097 GCATCCCTAGTAAATTGTGATGGGA 60.690 44.000 10.07 10.07 45.22 4.37
3859 4665 4.520492 GCATCCCTAGTAAATTGTGATGGG 59.480 45.833 0.00 0.00 34.98 4.00
3861 4667 6.698008 TTGCATCCCTAGTAAATTGTGATG 57.302 37.500 0.00 0.00 33.13 3.07
3862 4668 7.902920 ATTTGCATCCCTAGTAAATTGTGAT 57.097 32.000 0.00 0.00 28.88 3.06
3863 4669 7.716799 AATTTGCATCCCTAGTAAATTGTGA 57.283 32.000 0.00 0.00 38.98 3.58
3864 4670 7.278424 CCAAATTTGCATCCCTAGTAAATTGTG 59.722 37.037 12.92 0.00 39.33 3.33
3865 4671 7.180051 TCCAAATTTGCATCCCTAGTAAATTGT 59.820 33.333 12.92 0.00 39.33 2.71
3866 4672 7.555087 TCCAAATTTGCATCCCTAGTAAATTG 58.445 34.615 12.92 0.00 39.33 2.32
3868 4674 7.364673 GGTTCCAAATTTGCATCCCTAGTAAAT 60.365 37.037 12.92 0.00 33.62 1.40
3897 4703 0.682209 GGGTCAGAGCGTACACCCTA 60.682 60.000 9.13 0.00 44.70 3.53
3905 4711 7.592885 TTAATTATAAGTAGGGTCAGAGCGT 57.407 36.000 0.00 0.00 0.00 5.07
3907 4713 9.998106 TTGATTAATTATAAGTAGGGTCAGAGC 57.002 33.333 0.00 0.00 0.00 4.09
3976 4782 9.197306 ACCCTCTTTAGTTGAACAAAATTTAGT 57.803 29.630 0.00 0.00 0.00 2.24
3979 4785 7.768582 CCAACCCTCTTTAGTTGAACAAAATTT 59.231 33.333 0.00 0.00 44.93 1.82
3980 4786 7.125053 TCCAACCCTCTTTAGTTGAACAAAATT 59.875 33.333 0.00 0.00 44.93 1.82
4032 4838 9.137459 TGAAAACCACAGATAATTTTAGGAACA 57.863 29.630 0.00 0.00 0.00 3.18
4033 4839 9.974980 TTGAAAACCACAGATAATTTTAGGAAC 57.025 29.630 0.00 0.00 0.00 3.62
4045 4851 5.690865 TGGACTAGTTTGAAAACCACAGAT 58.309 37.500 0.00 0.00 39.71 2.90
4046 4852 5.105567 TGGACTAGTTTGAAAACCACAGA 57.894 39.130 0.00 0.00 39.71 3.41
4049 4855 4.546570 GCATGGACTAGTTTGAAAACCAC 58.453 43.478 0.00 0.00 39.71 4.16
4050 4856 3.252215 CGCATGGACTAGTTTGAAAACCA 59.748 43.478 0.00 0.00 39.71 3.67
4052 4858 4.483476 ACGCATGGACTAGTTTGAAAAC 57.517 40.909 0.00 0.00 39.17 2.43
4053 4859 5.302360 ACTACGCATGGACTAGTTTGAAAA 58.698 37.500 0.00 0.00 0.00 2.29
4055 4861 4.530710 ACTACGCATGGACTAGTTTGAA 57.469 40.909 0.00 0.00 0.00 2.69
4057 4863 4.495422 AGAACTACGCATGGACTAGTTTG 58.505 43.478 0.00 0.00 32.10 2.93
4058 4864 4.803098 AGAACTACGCATGGACTAGTTT 57.197 40.909 0.00 0.00 32.10 2.66
4059 4865 4.495422 CAAGAACTACGCATGGACTAGTT 58.505 43.478 0.00 0.00 34.16 2.24
4060 4866 3.676324 GCAAGAACTACGCATGGACTAGT 60.676 47.826 0.00 0.00 0.00 2.57
4061 4867 2.860735 GCAAGAACTACGCATGGACTAG 59.139 50.000 0.00 0.00 0.00 2.57
4062 4868 2.232696 TGCAAGAACTACGCATGGACTA 59.767 45.455 0.00 0.00 0.00 2.59
4064 4870 1.438651 TGCAAGAACTACGCATGGAC 58.561 50.000 0.00 0.00 0.00 4.02
4065 4871 2.177394 TTGCAAGAACTACGCATGGA 57.823 45.000 0.00 0.00 35.19 3.41
4066 4872 2.478370 CCATTGCAAGAACTACGCATGG 60.478 50.000 4.94 0.00 35.19 3.66
4067 4873 2.478370 CCCATTGCAAGAACTACGCATG 60.478 50.000 4.94 0.00 35.19 4.06
4068 4874 1.745087 CCCATTGCAAGAACTACGCAT 59.255 47.619 4.94 0.00 35.19 4.73
4069 4875 1.164411 CCCATTGCAAGAACTACGCA 58.836 50.000 4.94 0.00 0.00 5.24
4070 4876 0.179163 GCCCATTGCAAGAACTACGC 60.179 55.000 4.94 0.00 40.77 4.42
4071 4877 1.131126 CAGCCCATTGCAAGAACTACG 59.869 52.381 4.94 0.00 44.83 3.51
4072 4878 2.421424 CTCAGCCCATTGCAAGAACTAC 59.579 50.000 4.94 0.00 44.83 2.73
4073 4879 2.715046 CTCAGCCCATTGCAAGAACTA 58.285 47.619 4.94 0.00 44.83 2.24
4074 4880 1.542492 CTCAGCCCATTGCAAGAACT 58.458 50.000 4.94 0.00 44.83 3.01
4075 4881 0.108945 GCTCAGCCCATTGCAAGAAC 60.109 55.000 4.94 0.00 44.83 3.01
4076 4882 0.251474 AGCTCAGCCCATTGCAAGAA 60.251 50.000 4.94 0.00 44.83 2.52
4077 4883 0.679002 GAGCTCAGCCCATTGCAAGA 60.679 55.000 9.40 0.00 44.83 3.02
4078 4884 1.664321 GGAGCTCAGCCCATTGCAAG 61.664 60.000 17.19 0.00 44.83 4.01
4079 4885 1.679977 GGAGCTCAGCCCATTGCAA 60.680 57.895 17.19 0.00 44.83 4.08
4080 4886 2.044650 GGAGCTCAGCCCATTGCA 60.045 61.111 17.19 0.00 44.83 4.08
4081 4887 1.664321 CTTGGAGCTCAGCCCATTGC 61.664 60.000 17.19 0.00 41.71 3.56
4082 4888 1.664321 GCTTGGAGCTCAGCCCATTG 61.664 60.000 17.19 5.76 38.45 2.82
4083 4889 1.379576 GCTTGGAGCTCAGCCCATT 60.380 57.895 17.19 0.00 38.45 3.16
4084 4890 2.274760 GCTTGGAGCTCAGCCCAT 59.725 61.111 17.19 0.00 38.45 4.00
4085 4891 4.399395 CGCTTGGAGCTCAGCCCA 62.399 66.667 17.19 1.11 39.60 5.36
4086 4892 3.909086 AACGCTTGGAGCTCAGCCC 62.909 63.158 17.19 0.00 39.60 5.19
4087 4893 1.968540 AAACGCTTGGAGCTCAGCC 60.969 57.895 17.19 0.00 39.60 4.85
4088 4894 1.208614 CAAACGCTTGGAGCTCAGC 59.791 57.895 17.19 15.67 39.60 4.26
4089 4895 0.947244 AACAAACGCTTGGAGCTCAG 59.053 50.000 17.19 6.36 39.60 3.35
4090 4896 1.388547 AAACAAACGCTTGGAGCTCA 58.611 45.000 17.19 0.00 39.60 4.26
4091 4897 2.350484 GGTAAACAAACGCTTGGAGCTC 60.350 50.000 4.71 4.71 39.60 4.09
4092 4898 1.607148 GGTAAACAAACGCTTGGAGCT 59.393 47.619 3.25 0.00 39.60 4.09
4093 4899 1.607148 AGGTAAACAAACGCTTGGAGC 59.393 47.619 3.25 0.00 36.82 4.70
4094 4900 2.604614 GCAGGTAAACAAACGCTTGGAG 60.605 50.000 3.25 0.00 36.82 3.86
4095 4901 1.335496 GCAGGTAAACAAACGCTTGGA 59.665 47.619 3.25 0.00 36.82 3.53
4096 4902 1.766069 GCAGGTAAACAAACGCTTGG 58.234 50.000 3.25 0.00 36.82 3.61
4097 4903 1.394697 CGCAGGTAAACAAACGCTTG 58.605 50.000 0.00 0.00 38.61 4.01
4098 4904 0.317519 GCGCAGGTAAACAAACGCTT 60.318 50.000 0.30 0.00 42.81 4.68
4099 4905 1.281656 GCGCAGGTAAACAAACGCT 59.718 52.632 0.30 0.00 42.81 5.07
4100 4906 1.728074 GGCGCAGGTAAACAAACGC 60.728 57.895 10.83 0.00 45.19 4.84
4101 4907 0.385473 CTGGCGCAGGTAAACAAACG 60.385 55.000 10.83 0.00 0.00 3.60
4102 4908 0.666374 ACTGGCGCAGGTAAACAAAC 59.334 50.000 10.83 0.00 35.51 2.93
4104 4910 1.394618 AAACTGGCGCAGGTAAACAA 58.605 45.000 10.83 0.00 35.51 2.83
4106 4912 1.335496 TGAAAACTGGCGCAGGTAAAC 59.665 47.619 10.83 3.00 35.51 2.01
4108 4914 1.234821 CTGAAAACTGGCGCAGGTAA 58.765 50.000 10.83 0.00 35.51 2.85
4112 4918 0.040067 GAACCTGAAAACTGGCGCAG 60.040 55.000 10.83 7.58 37.52 5.18
4129 4935 2.946785 ACGGGTTTGTAACAATGGGAA 58.053 42.857 0.00 0.00 0.00 3.97
4130 4936 2.623889 CAACGGGTTTGTAACAATGGGA 59.376 45.455 0.00 0.00 0.00 4.37
4131 4937 2.623889 TCAACGGGTTTGTAACAATGGG 59.376 45.455 0.00 0.00 36.49 4.00
4134 4940 4.158025 TGTGTTCAACGGGTTTGTAACAAT 59.842 37.500 0.00 0.00 37.17 2.71
4138 4944 4.778534 TTTGTGTTCAACGGGTTTGTAA 57.221 36.364 0.00 0.00 36.49 2.41
4139 4945 4.483311 GTTTTGTGTTCAACGGGTTTGTA 58.517 39.130 0.00 0.00 36.49 2.41
4140 4946 3.318886 GTTTTGTGTTCAACGGGTTTGT 58.681 40.909 0.00 0.00 36.49 2.83
4141 4947 2.342948 CGTTTTGTGTTCAACGGGTTTG 59.657 45.455 0.00 0.00 41.67 2.93
4142 4948 2.597520 CGTTTTGTGTTCAACGGGTTT 58.402 42.857 0.00 0.00 41.67 3.27
4143 4949 2.265647 CGTTTTGTGTTCAACGGGTT 57.734 45.000 0.00 0.00 41.67 4.11
4147 4953 1.532298 GGACCCGTTTTGTGTTCAACG 60.532 52.381 0.00 0.00 44.34 4.10
4148 4954 1.746787 AGGACCCGTTTTGTGTTCAAC 59.253 47.619 0.00 0.00 32.93 3.18
4149 4955 1.746220 CAGGACCCGTTTTGTGTTCAA 59.254 47.619 0.00 0.00 0.00 2.69
4150 4956 1.340211 ACAGGACCCGTTTTGTGTTCA 60.340 47.619 0.00 0.00 0.00 3.18
4151 4957 1.064952 CACAGGACCCGTTTTGTGTTC 59.935 52.381 3.24 0.00 36.92 3.18
4152 4958 1.099689 CACAGGACCCGTTTTGTGTT 58.900 50.000 3.24 0.00 36.92 3.32
4153 4959 0.034863 ACACAGGACCCGTTTTGTGT 60.035 50.000 9.95 9.95 46.62 3.72
4154 4960 0.380378 CACACAGGACCCGTTTTGTG 59.620 55.000 8.80 8.80 44.81 3.33
4172 4978 2.099652 CTGCAGTCCCTGGTTCGACA 62.100 60.000 5.25 0.00 31.21 4.35
4185 4991 3.126001 TGATCTTTTCGGAACTGCAGT 57.874 42.857 15.25 15.25 0.00 4.40
4204 5010 3.496331 TCCTTTTAAACCAGAGGCCTTG 58.504 45.455 6.77 7.37 0.00 3.61
4206 5012 3.895704 TTCCTTTTAAACCAGAGGCCT 57.104 42.857 3.86 3.86 0.00 5.19
4235 5044 6.463995 TGTGTTTCCTTCACTTTTGCTATT 57.536 33.333 0.00 0.00 36.83 1.73
4266 5075 7.278424 GTGCCACCATACGAAAACTTACTATAA 59.722 37.037 0.00 0.00 0.00 0.98
4267 5076 6.757947 GTGCCACCATACGAAAACTTACTATA 59.242 38.462 0.00 0.00 0.00 1.31
4269 5078 4.931002 GTGCCACCATACGAAAACTTACTA 59.069 41.667 0.00 0.00 0.00 1.82
4270 5079 3.749609 GTGCCACCATACGAAAACTTACT 59.250 43.478 0.00 0.00 0.00 2.24
4271 5080 3.749609 AGTGCCACCATACGAAAACTTAC 59.250 43.478 0.00 0.00 0.00 2.34
4272 5081 4.010667 AGTGCCACCATACGAAAACTTA 57.989 40.909 0.00 0.00 0.00 2.24
4273 5082 2.858745 AGTGCCACCATACGAAAACTT 58.141 42.857 0.00 0.00 0.00 2.66
4274 5083 2.561478 AGTGCCACCATACGAAAACT 57.439 45.000 0.00 0.00 0.00 2.66
4275 5084 4.393680 TGAATAGTGCCACCATACGAAAAC 59.606 41.667 0.00 0.00 0.00 2.43
4276 5085 4.580868 TGAATAGTGCCACCATACGAAAA 58.419 39.130 0.00 0.00 0.00 2.29
4277 5086 4.209307 TGAATAGTGCCACCATACGAAA 57.791 40.909 0.00 0.00 0.00 3.46
4278 5087 3.897141 TGAATAGTGCCACCATACGAA 57.103 42.857 0.00 0.00 0.00 3.85
4279 5088 3.449377 TCTTGAATAGTGCCACCATACGA 59.551 43.478 0.00 0.00 0.00 3.43
4280 5089 3.555956 GTCTTGAATAGTGCCACCATACG 59.444 47.826 0.00 0.00 0.00 3.06
4281 5090 4.770795 AGTCTTGAATAGTGCCACCATAC 58.229 43.478 0.00 0.00 0.00 2.39
4282 5091 5.435686 AAGTCTTGAATAGTGCCACCATA 57.564 39.130 0.00 0.00 0.00 2.74
4283 5092 4.307032 AAGTCTTGAATAGTGCCACCAT 57.693 40.909 0.00 0.00 0.00 3.55
4284 5093 3.788227 AAGTCTTGAATAGTGCCACCA 57.212 42.857 0.00 0.00 0.00 4.17
4285 5094 3.191371 CCAAAGTCTTGAATAGTGCCACC 59.809 47.826 0.00 0.00 34.14 4.61
4286 5095 3.191371 CCCAAAGTCTTGAATAGTGCCAC 59.809 47.826 0.00 0.00 34.14 5.01
4287 5096 3.181434 ACCCAAAGTCTTGAATAGTGCCA 60.181 43.478 0.00 0.00 34.14 4.92
4288 5097 3.421844 ACCCAAAGTCTTGAATAGTGCC 58.578 45.455 0.00 0.00 34.14 5.01
4289 5098 3.440522 GGACCCAAAGTCTTGAATAGTGC 59.559 47.826 0.00 0.00 45.54 4.40
4290 5099 4.651778 TGGACCCAAAGTCTTGAATAGTG 58.348 43.478 0.00 0.00 45.54 2.74
4291 5100 4.993705 TGGACCCAAAGTCTTGAATAGT 57.006 40.909 0.00 0.00 45.54 2.12
4303 5112 0.551879 TCCGTTCCTTTGGACCCAAA 59.448 50.000 13.03 13.03 42.77 3.28
4304 5113 0.551879 TTCCGTTCCTTTGGACCCAA 59.448 50.000 0.00 0.00 32.95 4.12
4305 5114 0.109723 CTTCCGTTCCTTTGGACCCA 59.890 55.000 0.00 0.00 32.95 4.51
4306 5115 0.399075 TCTTCCGTTCCTTTGGACCC 59.601 55.000 0.00 0.00 32.95 4.46
4307 5116 2.265589 TTCTTCCGTTCCTTTGGACC 57.734 50.000 0.00 0.00 32.95 4.46
4308 5117 4.848562 AATTTCTTCCGTTCCTTTGGAC 57.151 40.909 0.00 0.00 32.95 4.02
4309 5118 5.221362 GGAAAATTTCTTCCGTTCCTTTGGA 60.221 40.000 5.65 0.00 35.79 3.53
4310 5119 4.988540 GGAAAATTTCTTCCGTTCCTTTGG 59.011 41.667 5.65 0.00 35.79 3.28
4319 5128 9.831253 ATTGAGGCCAAAGGAAAATTTCTTCCG 62.831 40.741 5.01 0.00 40.80 4.30
4320 5129 4.040339 TGAGGCCAAAGGAAAATTTCTTCC 59.960 41.667 5.01 1.21 44.61 3.46
4321 5130 5.213891 TGAGGCCAAAGGAAAATTTCTTC 57.786 39.130 5.01 0.00 0.00 2.87
4322 5131 5.628797 TTGAGGCCAAAGGAAAATTTCTT 57.371 34.783 5.01 0.00 0.00 2.52
4323 5132 5.830799 ATTGAGGCCAAAGGAAAATTTCT 57.169 34.783 5.01 0.00 35.67 2.52
4324 5133 6.486320 TCAAATTGAGGCCAAAGGAAAATTTC 59.514 34.615 5.01 0.00 35.67 2.17
4327 5136 5.307716 TCTCAAATTGAGGCCAAAGGAAAAT 59.692 36.000 21.35 0.00 44.39 1.82
4385 5194 7.505923 TCGGTCTCATAGAAATATGGAAAGAGA 59.494 37.037 0.00 0.00 0.00 3.10
4388 5197 8.839310 ATTCGGTCTCATAGAAATATGGAAAG 57.161 34.615 0.00 0.00 0.00 2.62
4392 5201 6.940739 AGGATTCGGTCTCATAGAAATATGG 58.059 40.000 0.00 0.00 0.00 2.74
4393 5202 7.875041 ACAAGGATTCGGTCTCATAGAAATATG 59.125 37.037 0.00 0.00 0.00 1.78
4394 5203 7.967908 ACAAGGATTCGGTCTCATAGAAATAT 58.032 34.615 0.00 0.00 0.00 1.28
4395 5204 7.361457 ACAAGGATTCGGTCTCATAGAAATA 57.639 36.000 0.00 0.00 0.00 1.40
4397 5206 5.677319 ACAAGGATTCGGTCTCATAGAAA 57.323 39.130 0.00 0.00 0.00 2.52
4400 5209 4.122776 CCAACAAGGATTCGGTCTCATAG 58.877 47.826 0.00 0.00 41.22 2.23
4401 5210 3.681594 GCCAACAAGGATTCGGTCTCATA 60.682 47.826 0.00 0.00 41.22 2.15
4402 5211 2.941415 GCCAACAAGGATTCGGTCTCAT 60.941 50.000 0.00 0.00 41.22 2.90
4403 5212 1.610624 GCCAACAAGGATTCGGTCTCA 60.611 52.381 0.00 0.00 41.22 3.27
4404 5213 1.087501 GCCAACAAGGATTCGGTCTC 58.912 55.000 0.00 0.00 41.22 3.36
4405 5214 0.400213 TGCCAACAAGGATTCGGTCT 59.600 50.000 0.00 0.00 41.22 3.85
4409 5218 6.130298 TGTTATAATGCCAACAAGGATTCG 57.870 37.500 0.00 0.00 41.22 3.34
4412 5221 8.806146 GGAATATGTTATAATGCCAACAAGGAT 58.194 33.333 0.00 0.00 41.22 3.24
4434 5243 3.452627 AGCGTTTAGATCACTGAGGGAAT 59.547 43.478 0.00 0.00 0.00 3.01
4435 5244 2.832129 AGCGTTTAGATCACTGAGGGAA 59.168 45.455 0.00 0.00 0.00 3.97
4436 5245 2.427453 GAGCGTTTAGATCACTGAGGGA 59.573 50.000 0.00 0.00 34.89 4.20
4437 5246 2.428890 AGAGCGTTTAGATCACTGAGGG 59.571 50.000 0.00 0.00 37.82 4.30
4438 5247 3.791973 AGAGCGTTTAGATCACTGAGG 57.208 47.619 0.00 0.00 37.82 3.86
4439 5248 9.469807 AAATATAAGAGCGTTTAGATCACTGAG 57.530 33.333 0.00 0.00 37.82 3.35
4440 5249 9.817809 AAAATATAAGAGCGTTTAGATCACTGA 57.182 29.630 0.00 0.00 37.82 3.41
4467 5276 8.645110 GGTATAATTAGCTACTCCCTGTGTAAA 58.355 37.037 0.00 0.00 0.00 2.01
4468 5277 8.008922 AGGTATAATTAGCTACTCCCTGTGTAA 58.991 37.037 0.00 0.00 34.44 2.41
4469 5278 7.533083 AGGTATAATTAGCTACTCCCTGTGTA 58.467 38.462 0.00 0.00 34.44 2.90
4470 5279 6.382925 AGGTATAATTAGCTACTCCCTGTGT 58.617 40.000 0.00 0.00 34.44 3.72
4471 5280 6.919775 AGGTATAATTAGCTACTCCCTGTG 57.080 41.667 0.00 0.00 34.44 3.66
4472 5281 7.932683 AAAGGTATAATTAGCTACTCCCTGT 57.067 36.000 0.00 0.00 35.12 4.00
4479 5288 9.803507 ACCCCATAAAAAGGTATAATTAGCTAC 57.196 33.333 0.00 0.00 35.12 3.58
4481 5290 8.733808 AGACCCCATAAAAAGGTATAATTAGCT 58.266 33.333 0.00 0.00 37.77 3.32
4493 5302 5.467035 TCAAAAGCAGACCCCATAAAAAG 57.533 39.130 0.00 0.00 0.00 2.27
4499 5308 3.259123 GTCAAATCAAAAGCAGACCCCAT 59.741 43.478 0.00 0.00 0.00 4.00
4500 5309 2.627699 GTCAAATCAAAAGCAGACCCCA 59.372 45.455 0.00 0.00 0.00 4.96
4501 5310 2.893489 AGTCAAATCAAAAGCAGACCCC 59.107 45.455 0.00 0.00 0.00 4.95
4503 5312 5.444663 AAGAGTCAAATCAAAAGCAGACC 57.555 39.130 0.00 0.00 0.00 3.85
4542 5382 9.914923 GTGTTTGGTTCATGAAAATTAGAAAAC 57.085 29.630 10.35 12.42 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.