Multiple sequence alignment - TraesCS2D01G489600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G489600 chr2D 100.000 3518 0 0 1 3518 588542000 588538483 0.000000e+00 6497.0
1 TraesCS2D01G489600 chr2D 89.720 535 46 6 329 855 223382801 223383334 0.000000e+00 675.0
2 TraesCS2D01G489600 chr2D 77.565 1150 197 38 1021 2161 588735709 588734612 3.830000e-179 638.0
3 TraesCS2D01G489600 chr2D 83.111 225 36 1 1630 1852 539431519 539431743 1.660000e-48 204.0
4 TraesCS2D01G489600 chr2D 100.000 28 0 0 1587 1614 539431491 539431518 6.000000e-03 52.8
5 TraesCS2D01G489600 chr2B 90.909 1584 125 14 885 2458 712077478 712075904 0.000000e+00 2109.0
6 TraesCS2D01G489600 chr2B 86.218 1785 215 23 995 2768 712008550 712006786 0.000000e+00 1905.0
7 TraesCS2D01G489600 chr2B 82.137 1797 253 43 995 2753 712051008 712049242 0.000000e+00 1478.0
8 TraesCS2D01G489600 chr2B 77.617 1175 203 37 1008 2170 712359948 712358822 0.000000e+00 658.0
9 TraesCS2D01G489600 chr2B 85.746 449 25 12 3098 3518 712006037 712005600 4.170000e-119 438.0
10 TraesCS2D01G489600 chr2B 89.836 305 16 3 2785 3089 712006803 712006514 9.220000e-101 377.0
11 TraesCS2D01G489600 chr2A 85.603 1799 212 30 993 2768 723134146 723132372 0.000000e+00 1844.0
12 TraesCS2D01G489600 chr2A 79.896 2507 341 96 995 3404 723160225 723157785 0.000000e+00 1687.0
13 TraesCS2D01G489600 chr2A 89.155 1337 127 12 1128 2458 723195025 723193701 0.000000e+00 1650.0
14 TraesCS2D01G489600 chr2A 91.165 532 41 4 329 854 648462271 648462802 0.000000e+00 717.0
15 TraesCS2D01G489600 chr2A 87.732 538 22 6 2785 3297 723132389 723131871 3.910000e-164 588.0
16 TraesCS2D01G489600 chr2A 75.868 1152 208 33 1021 2170 723511843 723510760 1.120000e-144 523.0
17 TraesCS2D01G489600 chr2A 92.388 289 11 4 854 1132 723199811 723199524 5.470000e-108 401.0
18 TraesCS2D01G489600 chr2A 90.625 224 17 2 3299 3518 723127744 723127521 9.550000e-76 294.0
19 TraesCS2D01G489600 chr2A 84.874 119 17 1 31 149 530675535 530675652 6.170000e-23 119.0
20 TraesCS2D01G489600 chr2A 74.545 220 48 8 2268 2483 32984705 32984920 4.840000e-14 89.8
21 TraesCS2D01G489600 chr3D 95.903 537 19 3 329 862 562414115 562414651 0.000000e+00 867.0
22 TraesCS2D01G489600 chr1D 94.497 527 26 3 332 855 23987163 23987689 0.000000e+00 809.0
23 TraesCS2D01G489600 chr1D 90.359 529 44 5 333 855 134999724 135000251 0.000000e+00 688.0
24 TraesCS2D01G489600 chr1D 86.406 537 58 8 333 854 285014700 285015236 1.100000e-159 573.0
25 TraesCS2D01G489600 chr5B 91.794 524 37 5 334 851 237699591 237700114 0.000000e+00 725.0
26 TraesCS2D01G489600 chr7A 91.353 532 37 6 331 854 64004717 64004187 0.000000e+00 719.0
27 TraesCS2D01G489600 chr7A 93.706 143 9 0 7 149 41010177 41010319 7.650000e-52 215.0
28 TraesCS2D01G489600 chr7A 89.431 123 12 1 31 153 629770205 629770326 1.690000e-33 154.0
29 TraesCS2D01G489600 chr6D 84.358 537 66 12 332 854 57788606 57789138 8.710000e-141 510.0
30 TraesCS2D01G489600 chr4A 93.007 143 4 1 7 149 27671225 27671089 1.660000e-48 204.0
31 TraesCS2D01G489600 chrUn 76.647 167 35 4 2322 2486 12878056 12877892 4.840000e-14 89.8
32 TraesCS2D01G489600 chrUn 76.647 167 35 4 2322 2486 274069085 274068921 4.840000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G489600 chr2D 588538483 588542000 3517 True 6497.000000 6497 100.000000 1 3518 1 chr2D.!!$R1 3517
1 TraesCS2D01G489600 chr2D 223382801 223383334 533 False 675.000000 675 89.720000 329 855 1 chr2D.!!$F1 526
2 TraesCS2D01G489600 chr2D 588734612 588735709 1097 True 638.000000 638 77.565000 1021 2161 1 chr2D.!!$R2 1140
3 TraesCS2D01G489600 chr2B 712075904 712077478 1574 True 2109.000000 2109 90.909000 885 2458 1 chr2B.!!$R2 1573
4 TraesCS2D01G489600 chr2B 712049242 712051008 1766 True 1478.000000 1478 82.137000 995 2753 1 chr2B.!!$R1 1758
5 TraesCS2D01G489600 chr2B 712005600 712008550 2950 True 906.666667 1905 87.266667 995 3518 3 chr2B.!!$R4 2523
6 TraesCS2D01G489600 chr2B 712358822 712359948 1126 True 658.000000 658 77.617000 1008 2170 1 chr2B.!!$R3 1162
7 TraesCS2D01G489600 chr2A 723157785 723160225 2440 True 1687.000000 1687 79.896000 995 3404 1 chr2A.!!$R2 2409
8 TraesCS2D01G489600 chr2A 723193701 723195025 1324 True 1650.000000 1650 89.155000 1128 2458 1 chr2A.!!$R3 1330
9 TraesCS2D01G489600 chr2A 723131871 723134146 2275 True 1216.000000 1844 86.667500 993 3297 2 chr2A.!!$R6 2304
10 TraesCS2D01G489600 chr2A 648462271 648462802 531 False 717.000000 717 91.165000 329 854 1 chr2A.!!$F3 525
11 TraesCS2D01G489600 chr2A 723510760 723511843 1083 True 523.000000 523 75.868000 1021 2170 1 chr2A.!!$R5 1149
12 TraesCS2D01G489600 chr3D 562414115 562414651 536 False 867.000000 867 95.903000 329 862 1 chr3D.!!$F1 533
13 TraesCS2D01G489600 chr1D 23987163 23987689 526 False 809.000000 809 94.497000 332 855 1 chr1D.!!$F1 523
14 TraesCS2D01G489600 chr1D 134999724 135000251 527 False 688.000000 688 90.359000 333 855 1 chr1D.!!$F2 522
15 TraesCS2D01G489600 chr1D 285014700 285015236 536 False 573.000000 573 86.406000 333 854 1 chr1D.!!$F3 521
16 TraesCS2D01G489600 chr5B 237699591 237700114 523 False 725.000000 725 91.794000 334 851 1 chr5B.!!$F1 517
17 TraesCS2D01G489600 chr7A 64004187 64004717 530 True 719.000000 719 91.353000 331 854 1 chr7A.!!$R1 523
18 TraesCS2D01G489600 chr6D 57788606 57789138 532 False 510.000000 510 84.358000 332 854 1 chr6D.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.039618 CAATGCTAGTTGGGTGGGGT 59.960 55.0 0.00 0.00 0.00 4.95 F
433 434 0.265254 TCCATACCCGTACCCATGGA 59.735 55.0 15.22 7.81 43.60 3.41 F
2293 2372 0.322008 GCCCAAGACTCTGTGGAAGG 60.322 60.0 8.19 0.00 37.03 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1359 1393 1.428620 GTACCTGAGCTCGACGTCC 59.571 63.158 10.58 0.00 0.00 4.79 R
2298 2377 0.250727 TGTAAGCCAAGCACCTGACC 60.251 55.000 0.00 0.00 0.00 4.02 R
3159 3771 1.970640 GTTTCAGGGGAATTGCCTTGT 59.029 47.619 24.28 4.33 36.66 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.654863 ACTTGTCCCTTCAACTGTTGG 58.345 47.619 19.55 4.59 0.00 3.77
21 22 1.338020 CTTGTCCCTTCAACTGTTGGC 59.662 52.381 19.55 0.00 0.00 4.52
22 23 0.817634 TGTCCCTTCAACTGTTGGCG 60.818 55.000 19.55 10.93 0.00 5.69
23 24 0.534203 GTCCCTTCAACTGTTGGCGA 60.534 55.000 19.55 7.89 0.00 5.54
24 25 0.181587 TCCCTTCAACTGTTGGCGAA 59.818 50.000 19.55 6.80 0.00 4.70
25 26 0.310854 CCCTTCAACTGTTGGCGAAC 59.689 55.000 19.55 4.41 0.00 3.95
26 27 1.021202 CCTTCAACTGTTGGCGAACA 58.979 50.000 19.55 13.92 39.88 3.18
32 33 4.966123 TGTTGGCGAACAGTGGAA 57.034 50.000 10.51 0.00 37.15 3.53
33 34 3.412722 TGTTGGCGAACAGTGGAAT 57.587 47.368 10.51 0.00 37.15 3.01
34 35 2.552599 TGTTGGCGAACAGTGGAATA 57.447 45.000 10.51 0.00 37.15 1.75
35 36 2.147958 TGTTGGCGAACAGTGGAATAC 58.852 47.619 10.51 0.00 37.15 1.89
36 37 2.147958 GTTGGCGAACAGTGGAATACA 58.852 47.619 6.73 0.00 31.78 2.29
37 38 2.093306 TGGCGAACAGTGGAATACAG 57.907 50.000 0.00 0.00 0.00 2.74
38 39 1.346395 TGGCGAACAGTGGAATACAGT 59.654 47.619 0.00 0.00 0.00 3.55
50 51 7.540474 AGTGGAATACAGTGATATACGGATT 57.460 36.000 0.00 0.00 0.00 3.01
51 52 7.378966 AGTGGAATACAGTGATATACGGATTG 58.621 38.462 0.00 0.00 0.00 2.67
52 53 6.090898 GTGGAATACAGTGATATACGGATTGC 59.909 42.308 0.00 0.00 30.82 3.56
53 54 6.014584 TGGAATACAGTGATATACGGATTGCT 60.015 38.462 0.00 0.00 31.18 3.91
54 55 6.311445 GGAATACAGTGATATACGGATTGCTG 59.689 42.308 0.00 0.00 29.08 4.41
55 56 3.995199 ACAGTGATATACGGATTGCTGG 58.005 45.455 0.00 0.00 0.00 4.85
56 57 3.641436 ACAGTGATATACGGATTGCTGGA 59.359 43.478 0.00 0.00 0.00 3.86
57 58 4.100963 ACAGTGATATACGGATTGCTGGAA 59.899 41.667 0.00 0.00 0.00 3.53
58 59 5.056480 CAGTGATATACGGATTGCTGGAAA 58.944 41.667 0.00 0.00 0.00 3.13
59 60 5.702670 CAGTGATATACGGATTGCTGGAAAT 59.297 40.000 0.00 0.00 0.00 2.17
60 61 6.205464 CAGTGATATACGGATTGCTGGAAATT 59.795 38.462 0.00 0.00 0.00 1.82
61 62 6.205464 AGTGATATACGGATTGCTGGAAATTG 59.795 38.462 0.00 0.00 0.00 2.32
62 63 3.715628 ATACGGATTGCTGGAAATTGC 57.284 42.857 0.00 0.00 0.00 3.56
63 64 1.255882 ACGGATTGCTGGAAATTGCA 58.744 45.000 0.00 0.00 37.42 4.08
70 71 3.485947 TGCTGGAAATTGCAATACGAC 57.514 42.857 13.39 4.49 36.15 4.34
71 72 3.081061 TGCTGGAAATTGCAATACGACT 58.919 40.909 13.39 0.00 36.15 4.18
72 73 3.119884 TGCTGGAAATTGCAATACGACTG 60.120 43.478 13.39 8.70 36.15 3.51
73 74 3.126858 GCTGGAAATTGCAATACGACTGA 59.873 43.478 13.39 0.00 0.00 3.41
74 75 4.651994 CTGGAAATTGCAATACGACTGAC 58.348 43.478 13.39 0.00 0.00 3.51
75 76 4.068599 TGGAAATTGCAATACGACTGACA 58.931 39.130 13.39 1.33 0.00 3.58
76 77 4.154015 TGGAAATTGCAATACGACTGACAG 59.846 41.667 13.39 0.00 0.00 3.51
77 78 3.747099 AATTGCAATACGACTGACAGC 57.253 42.857 13.39 0.00 0.00 4.40
78 79 2.162319 TTGCAATACGACTGACAGCA 57.838 45.000 1.25 0.00 0.00 4.41
79 80 1.428448 TGCAATACGACTGACAGCAC 58.572 50.000 1.25 0.00 0.00 4.40
80 81 1.270041 TGCAATACGACTGACAGCACA 60.270 47.619 1.25 0.00 0.00 4.57
81 82 2.002586 GCAATACGACTGACAGCACAT 58.997 47.619 1.25 0.00 0.00 3.21
82 83 3.186909 GCAATACGACTGACAGCACATA 58.813 45.455 1.25 0.00 0.00 2.29
83 84 3.804325 GCAATACGACTGACAGCACATAT 59.196 43.478 1.25 0.00 0.00 1.78
84 85 4.084849 GCAATACGACTGACAGCACATATC 60.085 45.833 1.25 0.00 0.00 1.63
85 86 2.586258 ACGACTGACAGCACATATCC 57.414 50.000 1.25 0.00 0.00 2.59
86 87 1.137086 ACGACTGACAGCACATATCCC 59.863 52.381 1.25 0.00 0.00 3.85
87 88 1.136891 CGACTGACAGCACATATCCCA 59.863 52.381 1.25 0.00 0.00 4.37
88 89 2.418609 CGACTGACAGCACATATCCCAA 60.419 50.000 1.25 0.00 0.00 4.12
89 90 3.742327 CGACTGACAGCACATATCCCAAT 60.742 47.826 1.25 0.00 0.00 3.16
90 91 3.548770 ACTGACAGCACATATCCCAATG 58.451 45.455 1.25 0.00 0.00 2.82
91 92 2.292569 CTGACAGCACATATCCCAATGC 59.707 50.000 0.00 0.00 38.39 3.56
93 94 3.136260 TGACAGCACATATCCCAATGCTA 59.864 43.478 0.00 0.00 46.49 3.49
94 95 3.748083 ACAGCACATATCCCAATGCTAG 58.252 45.455 0.00 0.00 46.49 3.42
95 96 3.137176 ACAGCACATATCCCAATGCTAGT 59.863 43.478 0.00 0.00 46.49 2.57
96 97 4.139786 CAGCACATATCCCAATGCTAGTT 58.860 43.478 0.00 0.00 46.49 2.24
97 98 4.023450 CAGCACATATCCCAATGCTAGTTG 60.023 45.833 0.00 0.00 46.49 3.16
98 99 3.254166 GCACATATCCCAATGCTAGTTGG 59.746 47.826 5.34 5.34 46.58 3.77
103 104 2.886382 CCAATGCTAGTTGGGTGGG 58.114 57.895 4.52 0.00 43.94 4.61
104 105 0.684153 CCAATGCTAGTTGGGTGGGG 60.684 60.000 4.52 0.00 43.94 4.96
105 106 0.039618 CAATGCTAGTTGGGTGGGGT 59.960 55.000 0.00 0.00 0.00 4.95
106 107 0.039618 AATGCTAGTTGGGTGGGGTG 59.960 55.000 0.00 0.00 0.00 4.61
107 108 1.863155 ATGCTAGTTGGGTGGGGTGG 61.863 60.000 0.00 0.00 0.00 4.61
108 109 2.228480 GCTAGTTGGGTGGGGTGGA 61.228 63.158 0.00 0.00 0.00 4.02
109 110 1.571773 GCTAGTTGGGTGGGGTGGAT 61.572 60.000 0.00 0.00 0.00 3.41
110 111 0.999712 CTAGTTGGGTGGGGTGGATT 59.000 55.000 0.00 0.00 0.00 3.01
111 112 0.996583 TAGTTGGGTGGGGTGGATTC 59.003 55.000 0.00 0.00 0.00 2.52
112 113 1.304962 GTTGGGTGGGGTGGATTCC 60.305 63.158 0.00 0.00 0.00 3.01
113 114 2.913117 TTGGGTGGGGTGGATTCCG 61.913 63.158 0.00 0.00 0.00 4.30
114 115 4.815108 GGGTGGGGTGGATTCCGC 62.815 72.222 7.78 7.78 40.24 5.54
136 137 4.463879 CCTGCAGACCGGCCTCTG 62.464 72.222 17.39 15.97 40.73 3.35
140 141 2.743928 CAGACCGGCCTCTGCAAC 60.744 66.667 8.93 0.00 40.13 4.17
141 142 4.379243 AGACCGGCCTCTGCAACG 62.379 66.667 0.00 0.00 40.13 4.10
142 143 4.681978 GACCGGCCTCTGCAACGT 62.682 66.667 0.00 0.00 40.13 3.99
143 144 4.250305 ACCGGCCTCTGCAACGTT 62.250 61.111 0.00 0.00 40.13 3.99
144 145 2.978010 CCGGCCTCTGCAACGTTT 60.978 61.111 0.00 0.00 40.13 3.60
145 146 2.551912 CCGGCCTCTGCAACGTTTT 61.552 57.895 0.00 0.00 40.13 2.43
146 147 1.358759 CGGCCTCTGCAACGTTTTT 59.641 52.632 0.00 0.00 40.13 1.94
173 174 9.224267 TCAAACTTTCTATCTCTTTCTTCATGG 57.776 33.333 0.00 0.00 0.00 3.66
174 175 9.007901 CAAACTTTCTATCTCTTTCTTCATGGT 57.992 33.333 0.00 0.00 0.00 3.55
176 177 9.660180 AACTTTCTATCTCTTTCTTCATGGTAC 57.340 33.333 0.00 0.00 0.00 3.34
177 178 9.041354 ACTTTCTATCTCTTTCTTCATGGTACT 57.959 33.333 0.00 0.00 0.00 2.73
178 179 9.311916 CTTTCTATCTCTTTCTTCATGGTACTG 57.688 37.037 0.00 0.00 0.00 2.74
179 180 7.962995 TCTATCTCTTTCTTCATGGTACTGT 57.037 36.000 0.00 0.00 0.00 3.55
180 181 7.776107 TCTATCTCTTTCTTCATGGTACTGTG 58.224 38.462 0.00 0.00 0.00 3.66
181 182 6.611613 ATCTCTTTCTTCATGGTACTGTGA 57.388 37.500 0.00 0.00 0.00 3.58
182 183 6.419484 TCTCTTTCTTCATGGTACTGTGAA 57.581 37.500 11.24 11.24 33.97 3.18
183 184 7.009179 TCTCTTTCTTCATGGTACTGTGAAT 57.991 36.000 11.88 0.00 34.43 2.57
184 185 7.453393 TCTCTTTCTTCATGGTACTGTGAATT 58.547 34.615 11.88 0.00 34.43 2.17
185 186 7.388776 TCTCTTTCTTCATGGTACTGTGAATTG 59.611 37.037 11.88 4.68 34.43 2.32
186 187 6.998074 TCTTTCTTCATGGTACTGTGAATTGT 59.002 34.615 11.88 0.00 34.43 2.71
187 188 6.801539 TTCTTCATGGTACTGTGAATTGTC 57.198 37.500 11.88 0.00 34.43 3.18
188 189 5.245531 TCTTCATGGTACTGTGAATTGTCC 58.754 41.667 11.88 0.00 34.43 4.02
189 190 3.950397 TCATGGTACTGTGAATTGTCCC 58.050 45.455 0.00 0.00 0.00 4.46
190 191 3.587061 TCATGGTACTGTGAATTGTCCCT 59.413 43.478 0.00 0.00 0.00 4.20
191 192 4.042809 TCATGGTACTGTGAATTGTCCCTT 59.957 41.667 0.00 0.00 0.00 3.95
192 193 4.015872 TGGTACTGTGAATTGTCCCTTC 57.984 45.455 0.00 0.00 0.00 3.46
193 194 3.392947 TGGTACTGTGAATTGTCCCTTCA 59.607 43.478 0.00 0.00 0.00 3.02
194 195 4.141367 TGGTACTGTGAATTGTCCCTTCAA 60.141 41.667 0.00 0.00 34.59 2.69
195 196 4.455877 GGTACTGTGAATTGTCCCTTCAAG 59.544 45.833 0.00 0.00 34.59 3.02
196 197 4.437682 ACTGTGAATTGTCCCTTCAAGA 57.562 40.909 0.00 0.00 34.59 3.02
197 198 4.392940 ACTGTGAATTGTCCCTTCAAGAG 58.607 43.478 0.00 0.00 34.59 2.85
198 199 3.754965 TGTGAATTGTCCCTTCAAGAGG 58.245 45.455 0.00 0.00 45.86 3.69
208 209 2.638480 CTTCAAGAGGACAACCCACA 57.362 50.000 0.00 0.00 37.41 4.17
209 210 3.146104 CTTCAAGAGGACAACCCACAT 57.854 47.619 0.00 0.00 37.41 3.21
210 211 2.859165 TCAAGAGGACAACCCACATC 57.141 50.000 0.00 0.00 37.41 3.06
211 212 2.338809 TCAAGAGGACAACCCACATCT 58.661 47.619 0.00 0.00 37.41 2.90
212 213 2.711009 TCAAGAGGACAACCCACATCTT 59.289 45.455 0.00 0.00 37.41 2.40
213 214 3.138283 TCAAGAGGACAACCCACATCTTT 59.862 43.478 0.00 0.00 37.41 2.52
214 215 3.425162 AGAGGACAACCCACATCTTTC 57.575 47.619 0.00 0.00 37.41 2.62
215 216 2.711009 AGAGGACAACCCACATCTTTCA 59.289 45.455 0.00 0.00 37.41 2.69
216 217 3.138283 AGAGGACAACCCACATCTTTCAA 59.862 43.478 0.00 0.00 37.41 2.69
217 218 3.490348 AGGACAACCCACATCTTTCAAG 58.510 45.455 0.00 0.00 37.41 3.02
218 219 3.138283 AGGACAACCCACATCTTTCAAGA 59.862 43.478 0.00 0.00 37.07 3.02
219 220 3.888930 GGACAACCCACATCTTTCAAGAA 59.111 43.478 0.00 0.00 35.05 2.52
220 221 4.261614 GGACAACCCACATCTTTCAAGAAC 60.262 45.833 0.00 0.00 35.05 3.01
221 222 3.636764 ACAACCCACATCTTTCAAGAACC 59.363 43.478 0.00 0.00 38.77 3.62
222 223 3.593442 ACCCACATCTTTCAAGAACCA 57.407 42.857 0.00 0.00 38.77 3.67
223 224 3.909732 ACCCACATCTTTCAAGAACCAA 58.090 40.909 0.00 0.00 38.77 3.67
224 225 3.636764 ACCCACATCTTTCAAGAACCAAC 59.363 43.478 0.00 0.00 38.77 3.77
225 226 3.304659 CCCACATCTTTCAAGAACCAACG 60.305 47.826 0.00 0.00 38.77 4.10
226 227 3.300009 CACATCTTTCAAGAACCAACGC 58.700 45.455 0.00 0.00 38.77 4.84
227 228 2.948979 ACATCTTTCAAGAACCAACGCA 59.051 40.909 0.00 0.00 38.77 5.24
228 229 3.569701 ACATCTTTCAAGAACCAACGCAT 59.430 39.130 0.00 0.00 38.77 4.73
229 230 4.037923 ACATCTTTCAAGAACCAACGCATT 59.962 37.500 0.00 0.00 38.77 3.56
230 231 5.240623 ACATCTTTCAAGAACCAACGCATTA 59.759 36.000 0.00 0.00 38.77 1.90
231 232 5.759506 TCTTTCAAGAACCAACGCATTAA 57.240 34.783 0.00 0.00 30.73 1.40
232 233 6.137794 TCTTTCAAGAACCAACGCATTAAA 57.862 33.333 0.00 0.00 30.73 1.52
233 234 6.565234 TCTTTCAAGAACCAACGCATTAAAA 58.435 32.000 0.00 0.00 30.73 1.52
234 235 7.206687 TCTTTCAAGAACCAACGCATTAAAAT 58.793 30.769 0.00 0.00 30.73 1.82
235 236 7.381139 TCTTTCAAGAACCAACGCATTAAAATC 59.619 33.333 0.00 0.00 30.73 2.17
236 237 5.150683 TCAAGAACCAACGCATTAAAATCG 58.849 37.500 0.00 0.00 0.00 3.34
237 238 3.498082 AGAACCAACGCATTAAAATCGC 58.502 40.909 0.00 0.00 0.00 4.58
238 239 3.190535 AGAACCAACGCATTAAAATCGCT 59.809 39.130 0.00 0.00 0.00 4.93
239 240 2.862512 ACCAACGCATTAAAATCGCTG 58.137 42.857 0.00 0.00 0.00 5.18
240 241 2.184448 CCAACGCATTAAAATCGCTGG 58.816 47.619 3.56 3.56 33.93 4.85
241 242 2.184448 CAACGCATTAAAATCGCTGGG 58.816 47.619 0.00 0.00 0.00 4.45
242 243 1.459450 ACGCATTAAAATCGCTGGGT 58.541 45.000 0.00 0.00 0.00 4.51
243 244 1.816224 ACGCATTAAAATCGCTGGGTT 59.184 42.857 0.00 0.00 31.63 4.11
244 245 2.230266 ACGCATTAAAATCGCTGGGTTT 59.770 40.909 0.00 0.00 31.63 3.27
245 246 3.249917 CGCATTAAAATCGCTGGGTTTT 58.750 40.909 8.91 8.91 0.00 2.43
246 247 3.677596 CGCATTAAAATCGCTGGGTTTTT 59.322 39.130 15.01 15.01 33.37 1.94
270 271 8.533569 TTTTTCTCTTTGTATTGGAGAGGTTT 57.466 30.769 0.00 0.00 37.95 3.27
271 272 8.533569 TTTTCTCTTTGTATTGGAGAGGTTTT 57.466 30.769 0.00 0.00 37.95 2.43
272 273 8.533569 TTTCTCTTTGTATTGGAGAGGTTTTT 57.466 30.769 0.00 0.00 37.95 1.94
273 274 7.745620 TCTCTTTGTATTGGAGAGGTTTTTC 57.254 36.000 0.00 0.00 37.95 2.29
274 275 7.287061 TCTCTTTGTATTGGAGAGGTTTTTCA 58.713 34.615 0.00 0.00 37.95 2.69
275 276 7.228706 TCTCTTTGTATTGGAGAGGTTTTTCAC 59.771 37.037 0.00 0.00 37.95 3.18
276 277 5.682943 TTGTATTGGAGAGGTTTTTCACG 57.317 39.130 0.00 0.00 0.00 4.35
277 278 4.710324 TGTATTGGAGAGGTTTTTCACGT 58.290 39.130 0.00 0.00 0.00 4.49
278 279 5.127491 TGTATTGGAGAGGTTTTTCACGTT 58.873 37.500 0.00 0.00 0.00 3.99
279 280 6.289834 TGTATTGGAGAGGTTTTTCACGTTA 58.710 36.000 0.00 0.00 0.00 3.18
280 281 6.766944 TGTATTGGAGAGGTTTTTCACGTTAA 59.233 34.615 0.00 0.00 0.00 2.01
281 282 6.702716 ATTGGAGAGGTTTTTCACGTTAAA 57.297 33.333 0.00 0.00 0.00 1.52
282 283 6.512342 TTGGAGAGGTTTTTCACGTTAAAA 57.488 33.333 3.57 3.57 0.00 1.52
283 284 6.702716 TGGAGAGGTTTTTCACGTTAAAAT 57.297 33.333 8.37 0.00 0.00 1.82
284 285 6.731164 TGGAGAGGTTTTTCACGTTAAAATC 58.269 36.000 8.37 7.88 0.00 2.17
285 286 5.849604 GGAGAGGTTTTTCACGTTAAAATCG 59.150 40.000 8.37 0.00 32.27 3.34
286 287 5.209977 AGAGGTTTTTCACGTTAAAATCGC 58.790 37.500 8.37 9.30 32.27 4.58
287 288 4.922719 AGGTTTTTCACGTTAAAATCGCA 58.077 34.783 8.37 0.00 32.27 5.10
288 289 5.525199 AGGTTTTTCACGTTAAAATCGCAT 58.475 33.333 8.37 0.00 32.27 4.73
289 290 5.401079 AGGTTTTTCACGTTAAAATCGCATG 59.599 36.000 8.37 0.00 32.27 4.06
290 291 5.174216 GGTTTTTCACGTTAAAATCGCATGT 59.826 36.000 8.37 0.00 0.00 3.21
291 292 6.278861 GTTTTTCACGTTAAAATCGCATGTC 58.721 36.000 8.37 0.00 0.00 3.06
292 293 5.351233 TTTCACGTTAAAATCGCATGTCT 57.649 34.783 0.00 0.00 0.00 3.41
293 294 5.351233 TTCACGTTAAAATCGCATGTCTT 57.649 34.783 0.00 0.00 0.00 3.01
294 295 5.351233 TCACGTTAAAATCGCATGTCTTT 57.649 34.783 0.00 0.00 0.00 2.52
295 296 5.753744 TCACGTTAAAATCGCATGTCTTTT 58.246 33.333 0.00 1.34 0.00 2.27
296 297 6.202937 TCACGTTAAAATCGCATGTCTTTTT 58.797 32.000 0.00 1.17 0.00 1.94
297 298 6.358558 TCACGTTAAAATCGCATGTCTTTTTC 59.641 34.615 0.00 0.00 0.00 2.29
298 299 5.338559 ACGTTAAAATCGCATGTCTTTTTCG 59.661 36.000 0.00 8.97 0.00 3.46
299 300 5.338559 CGTTAAAATCGCATGTCTTTTTCGT 59.661 36.000 0.00 0.00 0.00 3.85
300 301 6.129561 CGTTAAAATCGCATGTCTTTTTCGTT 60.130 34.615 0.00 0.00 0.00 3.85
301 302 5.806089 AAAATCGCATGTCTTTTTCGTTC 57.194 34.783 0.00 0.00 0.00 3.95
302 303 4.749245 AATCGCATGTCTTTTTCGTTCT 57.251 36.364 0.00 0.00 0.00 3.01
303 304 4.749245 ATCGCATGTCTTTTTCGTTCTT 57.251 36.364 0.00 0.00 0.00 2.52
304 305 3.872354 TCGCATGTCTTTTTCGTTCTTG 58.128 40.909 0.00 0.00 0.00 3.02
305 306 2.973224 CGCATGTCTTTTTCGTTCTTGG 59.027 45.455 0.00 0.00 0.00 3.61
306 307 3.548014 CGCATGTCTTTTTCGTTCTTGGT 60.548 43.478 0.00 0.00 0.00 3.67
307 308 3.975035 GCATGTCTTTTTCGTTCTTGGTC 59.025 43.478 0.00 0.00 0.00 4.02
308 309 3.936902 TGTCTTTTTCGTTCTTGGTCG 57.063 42.857 0.00 0.00 0.00 4.79
309 310 3.264104 TGTCTTTTTCGTTCTTGGTCGT 58.736 40.909 0.00 0.00 0.00 4.34
310 311 3.685756 TGTCTTTTTCGTTCTTGGTCGTT 59.314 39.130 0.00 0.00 0.00 3.85
311 312 4.154556 TGTCTTTTTCGTTCTTGGTCGTTT 59.845 37.500 0.00 0.00 0.00 3.60
312 313 4.494410 GTCTTTTTCGTTCTTGGTCGTTTG 59.506 41.667 0.00 0.00 0.00 2.93
313 314 4.392445 TCTTTTTCGTTCTTGGTCGTTTGA 59.608 37.500 0.00 0.00 0.00 2.69
314 315 3.936902 TTTCGTTCTTGGTCGTTTGAG 57.063 42.857 0.00 0.00 0.00 3.02
315 316 2.875087 TCGTTCTTGGTCGTTTGAGA 57.125 45.000 0.00 0.00 0.00 3.27
316 317 2.466846 TCGTTCTTGGTCGTTTGAGAC 58.533 47.619 0.00 0.00 40.25 3.36
317 318 2.100252 TCGTTCTTGGTCGTTTGAGACT 59.900 45.455 0.00 0.00 40.76 3.24
318 319 2.218759 CGTTCTTGGTCGTTTGAGACTG 59.781 50.000 0.00 0.00 40.76 3.51
319 320 2.526304 TCTTGGTCGTTTGAGACTGG 57.474 50.000 0.00 0.00 40.76 4.00
320 321 1.070134 TCTTGGTCGTTTGAGACTGGG 59.930 52.381 0.00 0.00 40.76 4.45
321 322 1.070134 CTTGGTCGTTTGAGACTGGGA 59.930 52.381 0.00 0.00 40.76 4.37
322 323 0.679505 TGGTCGTTTGAGACTGGGAG 59.320 55.000 0.00 0.00 40.76 4.30
323 324 0.966920 GGTCGTTTGAGACTGGGAGA 59.033 55.000 0.00 0.00 40.76 3.71
324 325 1.067495 GGTCGTTTGAGACTGGGAGAG 60.067 57.143 0.00 0.00 40.76 3.20
325 326 1.067495 GTCGTTTGAGACTGGGAGAGG 60.067 57.143 0.00 0.00 38.09 3.69
326 327 0.969894 CGTTTGAGACTGGGAGAGGT 59.030 55.000 0.00 0.00 0.00 3.85
327 328 1.337260 CGTTTGAGACTGGGAGAGGTG 60.337 57.143 0.00 0.00 0.00 4.00
433 434 0.265254 TCCATACCCGTACCCATGGA 59.735 55.000 15.22 7.81 43.60 3.41
546 547 9.321590 CACAATTATACATTCATTGATAGCACG 57.678 33.333 1.93 0.00 33.02 5.34
692 707 3.687212 CACATGTCATGCTAAACGGGTAA 59.313 43.478 12.91 0.00 0.00 2.85
767 784 3.109928 GCGGGTAGGGTATGGGTATTAT 58.890 50.000 0.00 0.00 0.00 1.28
802 820 0.775682 ATGCCCATACCCTGCCCATA 60.776 55.000 0.00 0.00 0.00 2.74
806 824 1.125093 CCATACCCTGCCCATACGGA 61.125 60.000 0.00 0.00 0.00 4.69
845 866 7.324354 GTACCCGTACCATGAATAAAATTGT 57.676 36.000 0.00 0.00 0.00 2.71
855 876 8.917088 ACCATGAATAAAATTGTCATCCTTAGG 58.083 33.333 0.00 0.00 29.49 2.69
862 883 6.737254 AAATTGTCATCCTTAGGTACAACG 57.263 37.500 14.89 0.00 33.27 4.10
863 884 5.670792 ATTGTCATCCTTAGGTACAACGA 57.329 39.130 14.89 4.33 33.27 3.85
864 885 4.445452 TGTCATCCTTAGGTACAACGAC 57.555 45.455 0.00 0.00 0.00 4.34
865 886 4.084287 TGTCATCCTTAGGTACAACGACT 58.916 43.478 0.00 0.00 0.00 4.18
866 887 4.082408 TGTCATCCTTAGGTACAACGACTG 60.082 45.833 0.00 0.00 0.00 3.51
867 888 4.082354 GTCATCCTTAGGTACAACGACTGT 60.082 45.833 0.00 0.00 42.47 3.55
868 889 5.124457 GTCATCCTTAGGTACAACGACTGTA 59.876 44.000 0.00 0.00 39.64 2.74
869 890 5.889853 TCATCCTTAGGTACAACGACTGTAT 59.110 40.000 0.00 0.00 42.50 2.29
870 891 7.012704 GTCATCCTTAGGTACAACGACTGTATA 59.987 40.741 0.00 0.00 42.50 1.47
871 892 7.557358 TCATCCTTAGGTACAACGACTGTATAA 59.443 37.037 0.00 2.18 42.50 0.98
872 893 7.325660 TCCTTAGGTACAACGACTGTATAAG 57.674 40.000 0.00 9.23 42.50 1.73
873 894 6.319658 TCCTTAGGTACAACGACTGTATAAGG 59.680 42.308 21.06 21.06 45.17 2.69
874 895 4.382345 AGGTACAACGACTGTATAAGGC 57.618 45.455 0.00 0.00 42.50 4.35
875 896 3.131755 AGGTACAACGACTGTATAAGGCC 59.868 47.826 0.00 0.00 42.50 5.19
876 897 3.119029 GGTACAACGACTGTATAAGGCCA 60.119 47.826 5.01 0.00 42.50 5.36
877 898 3.247006 ACAACGACTGTATAAGGCCAG 57.753 47.619 5.01 0.00 36.10 4.85
878 899 2.093658 ACAACGACTGTATAAGGCCAGG 60.094 50.000 5.01 0.00 36.10 4.45
879 900 2.154567 ACGACTGTATAAGGCCAGGA 57.845 50.000 5.01 0.00 32.90 3.86
880 901 2.679082 ACGACTGTATAAGGCCAGGAT 58.321 47.619 5.01 0.00 32.90 3.24
881 902 2.628657 ACGACTGTATAAGGCCAGGATC 59.371 50.000 5.01 0.00 32.90 3.36
882 903 2.028930 CGACTGTATAAGGCCAGGATCC 60.029 54.545 5.01 2.48 32.90 3.36
883 904 3.243724 GACTGTATAAGGCCAGGATCCT 58.756 50.000 9.02 9.02 34.90 3.24
910 931 4.448200 GGGTTTAAAGTGGAACCTTACCCT 60.448 45.833 0.00 0.00 43.78 4.34
911 932 4.763793 GGTTTAAAGTGGAACCTTACCCTC 59.236 45.833 0.00 0.00 41.62 4.30
912 933 4.645863 TTAAAGTGGAACCTTACCCTCC 57.354 45.455 0.00 0.00 37.80 4.30
913 934 0.981943 AAGTGGAACCTTACCCTCCG 59.018 55.000 0.00 0.00 37.80 4.63
922 947 1.228521 TTACCCTCCGTGACCGACA 60.229 57.895 0.00 0.00 35.63 4.35
948 973 5.047943 CGGAACCGACTAATAATCAGGAGAT 60.048 44.000 7.53 0.00 42.83 2.75
984 1009 1.678269 GCACGCGATCGCATCTATCC 61.678 60.000 36.45 14.97 42.06 2.59
1643 1680 3.574445 GCTGCAGCGGCTGATCTG 61.574 66.667 32.72 19.37 41.06 2.90
1920 1969 2.432456 GCACCAGACGACATCGCA 60.432 61.111 0.14 0.00 44.43 5.10
1929 1978 2.261671 GACATCGCACCGGTCACT 59.738 61.111 2.59 0.00 0.00 3.41
1959 2008 1.813513 GCAGCTGCAAGAAGAACCTA 58.186 50.000 33.36 0.00 41.59 3.08
2293 2372 0.322008 GCCCAAGACTCTGTGGAAGG 60.322 60.000 8.19 0.00 37.03 3.46
2294 2373 1.059913 CCCAAGACTCTGTGGAAGGT 58.940 55.000 8.19 0.00 37.03 3.50
2298 2377 0.683973 AGACTCTGTGGAAGGTGCAG 59.316 55.000 0.00 0.00 0.00 4.41
2345 2424 8.868522 ATGAGAAGAATCAACATTGGAAACTA 57.131 30.769 0.00 0.00 31.76 2.24
2347 2426 7.719193 TGAGAAGAATCAACATTGGAAACTACA 59.281 33.333 0.00 0.00 0.00 2.74
2421 2500 2.003301 GCGTTGGAGGAATTCTCTGTC 58.997 52.381 5.23 0.00 42.10 3.51
2473 2552 8.261522 AGAAGGATGAGATTACAAAGGAGTTAC 58.738 37.037 0.00 0.00 0.00 2.50
2490 2569 4.251268 AGTTACTATCCTGGCGACAAAAC 58.749 43.478 0.00 0.00 42.06 2.43
2665 2753 7.486407 AAATGTGCTTCTTTTTCCCTGATAT 57.514 32.000 0.00 0.00 0.00 1.63
2756 2891 4.678509 TTGCCGAACAATTCTACATGAC 57.321 40.909 0.00 0.00 31.73 3.06
2757 2892 3.937814 TGCCGAACAATTCTACATGACT 58.062 40.909 0.00 0.00 0.00 3.41
2758 2893 4.323417 TGCCGAACAATTCTACATGACTT 58.677 39.130 0.00 0.00 0.00 3.01
2759 2894 4.154015 TGCCGAACAATTCTACATGACTTG 59.846 41.667 0.00 0.00 40.04 3.16
2760 2895 4.651994 CCGAACAATTCTACATGACTTGC 58.348 43.478 0.00 0.00 38.44 4.01
2761 2896 4.154015 CCGAACAATTCTACATGACTTGCA 59.846 41.667 0.00 0.00 38.44 4.08
2762 2897 5.082059 CGAACAATTCTACATGACTTGCAC 58.918 41.667 0.00 0.00 38.44 4.57
2763 2898 5.106948 CGAACAATTCTACATGACTTGCACT 60.107 40.000 0.00 0.00 38.44 4.40
2764 2899 5.618056 ACAATTCTACATGACTTGCACTG 57.382 39.130 0.00 0.00 38.44 3.66
2765 2900 4.456911 ACAATTCTACATGACTTGCACTGG 59.543 41.667 0.00 0.00 38.44 4.00
2766 2901 2.099141 TCTACATGACTTGCACTGGC 57.901 50.000 0.00 0.00 41.68 4.85
2777 2912 1.080974 GCACTGGCACATGACTTGC 60.081 57.895 0.00 0.00 38.20 4.01
2778 2913 1.798234 GCACTGGCACATGACTTGCA 61.798 55.000 0.00 0.00 42.12 4.08
2779 2914 0.039798 CACTGGCACATGACTTGCAC 60.040 55.000 0.00 0.00 42.12 4.57
2780 2915 0.179009 ACTGGCACATGACTTGCACT 60.179 50.000 0.00 0.00 42.12 4.40
2781 2916 0.240145 CTGGCACATGACTTGCACTG 59.760 55.000 0.00 0.00 42.12 3.66
2782 2917 1.174078 TGGCACATGACTTGCACTGG 61.174 55.000 0.00 0.00 42.12 4.00
2783 2918 1.080974 GCACATGACTTGCACTGGC 60.081 57.895 0.00 0.00 39.93 4.85
2864 2999 6.804677 ACAAACAAACTGTTATGATGCAGAA 58.195 32.000 0.00 0.00 40.14 3.02
2928 3063 7.975616 TGTAATTACCAATGTCTTACTCCGTAC 59.024 37.037 13.01 0.00 0.00 3.67
2929 3064 3.498927 ACCAATGTCTTACTCCGTACG 57.501 47.619 8.69 8.69 0.00 3.67
3038 3180 3.823873 AGCATCAGAAGGGACTATCTACG 59.176 47.826 0.00 0.00 38.49 3.51
3046 3188 5.597182 AGAAGGGACTATCTACGTATGCAAA 59.403 40.000 0.00 0.00 38.49 3.68
3061 3203 7.748847 ACGTATGCAAAGTATAAAAGGAACAG 58.251 34.615 0.00 0.00 0.00 3.16
3089 3231 9.243105 ACAATGAAAACAAGCATATACTACCTT 57.757 29.630 0.00 0.00 0.00 3.50
3096 3706 4.608948 AGCATATACTACCTTGGAGTGC 57.391 45.455 0.00 0.00 0.00 4.40
3159 3771 4.094476 CTGGGAAGTGGGAACTCTAACTA 58.906 47.826 0.00 0.00 32.92 2.24
3160 3772 3.836562 TGGGAAGTGGGAACTCTAACTAC 59.163 47.826 0.00 0.00 32.92 2.73
3184 3816 3.011708 AGGCAATTCCCCTGAAACTATGT 59.988 43.478 0.00 0.00 33.32 2.29
3198 3830 6.342111 TGAAACTATGTTATGGCGTCACATA 58.658 36.000 11.99 11.99 33.19 2.29
3251 3888 4.890158 TTCAGCTTCAAGAGATACACCA 57.110 40.909 0.00 0.00 0.00 4.17
3298 3935 3.709141 GCATGTGGGGGTTGGTTATTTAT 59.291 43.478 0.00 0.00 0.00 1.40
3299 3936 4.896482 GCATGTGGGGGTTGGTTATTTATA 59.104 41.667 0.00 0.00 0.00 0.98
3310 3947 9.647797 GGGTTGGTTATTTATAACTGGAAAAAG 57.352 33.333 11.28 0.00 41.71 2.27
3400 4048 6.868864 TGTCAGACAAAAATAGTCTCTACTGC 59.131 38.462 0.00 0.00 44.11 4.40
3411 4059 4.826556 AGTCTCTACTGCAGACCAATTTC 58.173 43.478 23.35 3.77 41.20 2.17
3415 4063 4.326826 TCTACTGCAGACCAATTTCCAAG 58.673 43.478 23.35 0.44 0.00 3.61
3446 4094 8.284945 ACTCAAATCTGAAAATAGCATTAGCA 57.715 30.769 0.00 0.00 45.49 3.49
3447 4095 8.910944 ACTCAAATCTGAAAATAGCATTAGCAT 58.089 29.630 0.00 0.00 45.49 3.79
3448 4096 9.745880 CTCAAATCTGAAAATAGCATTAGCATT 57.254 29.630 0.00 0.00 45.49 3.56
3449 4097 9.740239 TCAAATCTGAAAATAGCATTAGCATTC 57.260 29.630 0.00 0.00 45.49 2.67
3450 4098 9.745880 CAAATCTGAAAATAGCATTAGCATTCT 57.254 29.630 0.00 0.00 45.49 2.40
3451 4099 9.962783 AAATCTGAAAATAGCATTAGCATTCTC 57.037 29.630 0.00 0.00 45.49 2.87
3459 4107 5.702349 AGCATTAGCATTCTCCAAATAGC 57.298 39.130 0.00 0.00 45.49 2.97
3465 4113 3.054139 AGCATTCTCCAAATAGCCACTCA 60.054 43.478 0.00 0.00 0.00 3.41
3475 4123 5.066505 CCAAATAGCCACTCACTATTTCCAC 59.933 44.000 5.93 0.00 44.55 4.02
3478 4126 6.747414 ATAGCCACTCACTATTTCCACATA 57.253 37.500 0.00 0.00 0.00 2.29
3480 4128 6.747414 AGCCACTCACTATTTCCACATATA 57.253 37.500 0.00 0.00 0.00 0.86
3517 4165 8.934023 AAATTGTAGACTGTAAATGGAGGAAA 57.066 30.769 0.00 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.654863 CCAACAGTTGAAGGGACAAGT 58.345 47.619 15.36 0.00 34.30 3.16
1 2 1.338020 GCCAACAGTTGAAGGGACAAG 59.662 52.381 15.36 0.00 0.00 3.16
2 3 1.398692 GCCAACAGTTGAAGGGACAA 58.601 50.000 15.36 0.00 0.00 3.18
3 4 0.817634 CGCCAACAGTTGAAGGGACA 60.818 55.000 15.36 0.00 0.00 4.02
4 5 0.534203 TCGCCAACAGTTGAAGGGAC 60.534 55.000 15.36 0.00 0.00 4.46
5 6 0.181587 TTCGCCAACAGTTGAAGGGA 59.818 50.000 15.36 9.67 0.00 4.20
6 7 0.310854 GTTCGCCAACAGTTGAAGGG 59.689 55.000 15.36 7.48 32.14 3.95
7 8 1.021202 TGTTCGCCAACAGTTGAAGG 58.979 50.000 15.36 0.00 37.61 3.46
15 16 2.147958 GTATTCCACTGTTCGCCAACA 58.852 47.619 0.00 0.00 40.40 3.33
16 17 2.147958 TGTATTCCACTGTTCGCCAAC 58.852 47.619 0.00 0.00 0.00 3.77
17 18 2.224426 ACTGTATTCCACTGTTCGCCAA 60.224 45.455 0.00 0.00 35.98 4.52
18 19 1.346395 ACTGTATTCCACTGTTCGCCA 59.654 47.619 0.00 0.00 35.98 5.69
19 20 1.732259 CACTGTATTCCACTGTTCGCC 59.268 52.381 0.00 0.00 37.22 5.54
20 21 2.683968 TCACTGTATTCCACTGTTCGC 58.316 47.619 0.00 0.00 37.22 4.70
21 22 6.359883 CGTATATCACTGTATTCCACTGTTCG 59.640 42.308 0.00 0.00 37.22 3.95
22 23 6.641314 CCGTATATCACTGTATTCCACTGTTC 59.359 42.308 0.00 0.00 37.22 3.18
23 24 6.322969 TCCGTATATCACTGTATTCCACTGTT 59.677 38.462 0.00 0.00 37.22 3.16
24 25 5.831525 TCCGTATATCACTGTATTCCACTGT 59.168 40.000 0.00 0.00 39.68 3.55
25 26 6.327279 TCCGTATATCACTGTATTCCACTG 57.673 41.667 0.00 0.00 0.00 3.66
26 27 7.378966 CAATCCGTATATCACTGTATTCCACT 58.621 38.462 0.00 0.00 0.00 4.00
27 28 6.090898 GCAATCCGTATATCACTGTATTCCAC 59.909 42.308 0.00 0.00 0.00 4.02
28 29 6.014584 AGCAATCCGTATATCACTGTATTCCA 60.015 38.462 0.00 0.00 0.00 3.53
29 30 6.311445 CAGCAATCCGTATATCACTGTATTCC 59.689 42.308 0.00 0.00 0.00 3.01
30 31 6.311445 CCAGCAATCCGTATATCACTGTATTC 59.689 42.308 0.00 0.00 0.00 1.75
31 32 6.014584 TCCAGCAATCCGTATATCACTGTATT 60.015 38.462 0.00 0.00 0.00 1.89
32 33 5.480422 TCCAGCAATCCGTATATCACTGTAT 59.520 40.000 0.00 0.00 0.00 2.29
33 34 4.830600 TCCAGCAATCCGTATATCACTGTA 59.169 41.667 0.00 0.00 0.00 2.74
34 35 3.641436 TCCAGCAATCCGTATATCACTGT 59.359 43.478 0.00 0.00 0.00 3.55
35 36 4.257267 TCCAGCAATCCGTATATCACTG 57.743 45.455 0.00 0.00 0.00 3.66
36 37 4.955811 TTCCAGCAATCCGTATATCACT 57.044 40.909 0.00 0.00 0.00 3.41
37 38 6.373779 CAATTTCCAGCAATCCGTATATCAC 58.626 40.000 0.00 0.00 0.00 3.06
38 39 5.048782 GCAATTTCCAGCAATCCGTATATCA 60.049 40.000 0.00 0.00 0.00 2.15
39 40 5.048782 TGCAATTTCCAGCAATCCGTATATC 60.049 40.000 0.00 0.00 37.90 1.63
40 41 4.826733 TGCAATTTCCAGCAATCCGTATAT 59.173 37.500 0.00 0.00 37.90 0.86
41 42 4.203226 TGCAATTTCCAGCAATCCGTATA 58.797 39.130 0.00 0.00 37.90 1.47
42 43 3.023119 TGCAATTTCCAGCAATCCGTAT 58.977 40.909 0.00 0.00 37.90 3.06
43 44 2.441410 TGCAATTTCCAGCAATCCGTA 58.559 42.857 0.00 0.00 37.90 4.02
44 45 1.255882 TGCAATTTCCAGCAATCCGT 58.744 45.000 0.00 0.00 37.90 4.69
45 46 2.367030 TTGCAATTTCCAGCAATCCG 57.633 45.000 0.00 0.00 44.98 4.18
50 51 3.081061 AGTCGTATTGCAATTTCCAGCA 58.919 40.909 18.75 0.00 39.32 4.41
51 52 3.126858 TCAGTCGTATTGCAATTTCCAGC 59.873 43.478 18.75 4.01 0.00 4.85
52 53 4.154015 TGTCAGTCGTATTGCAATTTCCAG 59.846 41.667 18.75 5.23 0.00 3.86
53 54 4.068599 TGTCAGTCGTATTGCAATTTCCA 58.931 39.130 18.75 0.00 0.00 3.53
54 55 4.651994 CTGTCAGTCGTATTGCAATTTCC 58.348 43.478 18.75 5.37 0.00 3.13
55 56 4.091424 GCTGTCAGTCGTATTGCAATTTC 58.909 43.478 18.75 10.39 0.00 2.17
56 57 3.501828 TGCTGTCAGTCGTATTGCAATTT 59.498 39.130 18.75 0.00 0.00 1.82
57 58 3.073678 TGCTGTCAGTCGTATTGCAATT 58.926 40.909 18.75 1.81 0.00 2.32
58 59 2.416547 GTGCTGTCAGTCGTATTGCAAT 59.583 45.455 17.56 17.56 0.00 3.56
59 60 1.798223 GTGCTGTCAGTCGTATTGCAA 59.202 47.619 0.00 0.00 0.00 4.08
60 61 1.270041 TGTGCTGTCAGTCGTATTGCA 60.270 47.619 0.93 0.00 0.00 4.08
61 62 1.428448 TGTGCTGTCAGTCGTATTGC 58.572 50.000 0.93 0.00 0.00 3.56
62 63 4.445718 GGATATGTGCTGTCAGTCGTATTG 59.554 45.833 0.93 0.00 0.00 1.90
63 64 4.501571 GGGATATGTGCTGTCAGTCGTATT 60.502 45.833 0.93 0.00 0.00 1.89
64 65 3.005897 GGGATATGTGCTGTCAGTCGTAT 59.994 47.826 0.93 6.65 0.00 3.06
65 66 2.361119 GGGATATGTGCTGTCAGTCGTA 59.639 50.000 0.93 2.25 0.00 3.43
66 67 1.137086 GGGATATGTGCTGTCAGTCGT 59.863 52.381 0.93 0.07 0.00 4.34
67 68 1.136891 TGGGATATGTGCTGTCAGTCG 59.863 52.381 0.93 0.00 0.00 4.18
68 69 2.988010 TGGGATATGTGCTGTCAGTC 57.012 50.000 0.93 0.00 0.00 3.51
69 70 3.548770 CATTGGGATATGTGCTGTCAGT 58.451 45.455 0.93 0.00 0.00 3.41
70 71 2.292569 GCATTGGGATATGTGCTGTCAG 59.707 50.000 0.00 0.00 34.85 3.51
71 72 2.092267 AGCATTGGGATATGTGCTGTCA 60.092 45.455 0.00 0.00 45.44 3.58
72 73 2.579873 AGCATTGGGATATGTGCTGTC 58.420 47.619 0.00 0.00 45.44 3.51
73 74 2.742428 AGCATTGGGATATGTGCTGT 57.258 45.000 0.00 0.00 45.44 4.40
74 75 3.748083 ACTAGCATTGGGATATGTGCTG 58.252 45.455 8.80 2.49 46.48 4.41
76 77 3.254166 CCAACTAGCATTGGGATATGTGC 59.746 47.826 4.52 0.00 44.74 4.57
86 87 0.039618 ACCCCACCCAACTAGCATTG 59.960 55.000 0.00 0.00 0.00 2.82
87 88 0.039618 CACCCCACCCAACTAGCATT 59.960 55.000 0.00 0.00 0.00 3.56
88 89 1.691219 CACCCCACCCAACTAGCAT 59.309 57.895 0.00 0.00 0.00 3.79
89 90 2.534396 CCACCCCACCCAACTAGCA 61.534 63.158 0.00 0.00 0.00 3.49
90 91 1.571773 ATCCACCCCACCCAACTAGC 61.572 60.000 0.00 0.00 0.00 3.42
91 92 0.999712 AATCCACCCCACCCAACTAG 59.000 55.000 0.00 0.00 0.00 2.57
92 93 0.996583 GAATCCACCCCACCCAACTA 59.003 55.000 0.00 0.00 0.00 2.24
93 94 1.774300 GAATCCACCCCACCCAACT 59.226 57.895 0.00 0.00 0.00 3.16
94 95 1.304962 GGAATCCACCCCACCCAAC 60.305 63.158 0.00 0.00 0.00 3.77
95 96 2.913117 CGGAATCCACCCCACCCAA 61.913 63.158 0.00 0.00 0.00 4.12
96 97 3.334891 CGGAATCCACCCCACCCA 61.335 66.667 0.00 0.00 0.00 4.51
97 98 4.815108 GCGGAATCCACCCCACCC 62.815 72.222 0.00 0.00 0.00 4.61
119 120 4.463879 CAGAGGCCGGTCTGCAGG 62.464 72.222 16.74 0.00 37.74 4.85
123 124 2.743928 GTTGCAGAGGCCGGTCTG 60.744 66.667 16.74 16.22 45.91 3.51
124 125 4.379243 CGTTGCAGAGGCCGGTCT 62.379 66.667 9.26 9.26 40.13 3.85
125 126 4.681978 ACGTTGCAGAGGCCGGTC 62.682 66.667 0.00 0.00 40.13 4.79
126 127 3.767630 AAACGTTGCAGAGGCCGGT 62.768 57.895 0.00 0.00 40.13 5.28
127 128 2.070654 AAAAACGTTGCAGAGGCCGG 62.071 55.000 0.00 0.00 40.13 6.13
128 129 1.358759 AAAAACGTTGCAGAGGCCG 59.641 52.632 0.00 0.00 40.13 6.13
147 148 9.224267 CCATGAAGAAAGAGATAGAAAGTTTGA 57.776 33.333 0.00 0.00 0.00 2.69
148 149 9.007901 ACCATGAAGAAAGAGATAGAAAGTTTG 57.992 33.333 0.00 0.00 0.00 2.93
150 151 9.660180 GTACCATGAAGAAAGAGATAGAAAGTT 57.340 33.333 0.00 0.00 0.00 2.66
151 152 9.041354 AGTACCATGAAGAAAGAGATAGAAAGT 57.959 33.333 0.00 0.00 0.00 2.66
152 153 9.311916 CAGTACCATGAAGAAAGAGATAGAAAG 57.688 37.037 0.00 0.00 0.00 2.62
153 154 8.816894 ACAGTACCATGAAGAAAGAGATAGAAA 58.183 33.333 0.00 0.00 0.00 2.52
154 155 8.253810 CACAGTACCATGAAGAAAGAGATAGAA 58.746 37.037 0.00 0.00 0.00 2.10
155 156 7.615757 TCACAGTACCATGAAGAAAGAGATAGA 59.384 37.037 0.00 0.00 0.00 1.98
156 157 7.776107 TCACAGTACCATGAAGAAAGAGATAG 58.224 38.462 0.00 0.00 0.00 2.08
157 158 7.718334 TCACAGTACCATGAAGAAAGAGATA 57.282 36.000 0.00 0.00 0.00 1.98
158 159 6.611613 TCACAGTACCATGAAGAAAGAGAT 57.388 37.500 0.00 0.00 0.00 2.75
159 160 6.419484 TTCACAGTACCATGAAGAAAGAGA 57.581 37.500 5.50 0.00 31.29 3.10
160 161 7.173907 ACAATTCACAGTACCATGAAGAAAGAG 59.826 37.037 13.20 4.51 38.19 2.85
161 162 6.998074 ACAATTCACAGTACCATGAAGAAAGA 59.002 34.615 13.20 0.00 38.19 2.52
162 163 7.206981 ACAATTCACAGTACCATGAAGAAAG 57.793 36.000 13.20 7.02 38.19 2.62
163 164 6.206634 GGACAATTCACAGTACCATGAAGAAA 59.793 38.462 13.20 0.00 38.19 2.52
164 165 5.705441 GGACAATTCACAGTACCATGAAGAA 59.295 40.000 13.20 6.45 38.19 2.52
165 166 5.245531 GGACAATTCACAGTACCATGAAGA 58.754 41.667 13.20 0.00 38.19 2.87
166 167 4.396166 GGGACAATTCACAGTACCATGAAG 59.604 45.833 13.20 5.43 38.67 3.02
167 168 4.042809 AGGGACAATTCACAGTACCATGAA 59.957 41.667 10.83 10.83 41.43 2.57
168 169 3.587061 AGGGACAATTCACAGTACCATGA 59.413 43.478 0.00 0.00 41.43 3.07
169 170 3.955471 AGGGACAATTCACAGTACCATG 58.045 45.455 0.00 0.00 41.43 3.66
170 171 4.042809 TGAAGGGACAATTCACAGTACCAT 59.957 41.667 0.00 0.00 41.43 3.55
171 172 3.392947 TGAAGGGACAATTCACAGTACCA 59.607 43.478 0.00 0.00 41.43 3.25
172 173 4.015872 TGAAGGGACAATTCACAGTACC 57.984 45.455 0.00 0.00 39.13 3.34
173 174 5.305585 TCTTGAAGGGACAATTCACAGTAC 58.694 41.667 0.00 0.00 36.44 2.73
174 175 5.513094 CCTCTTGAAGGGACAATTCACAGTA 60.513 44.000 0.00 0.00 42.03 2.74
175 176 4.392940 CTCTTGAAGGGACAATTCACAGT 58.607 43.478 0.00 0.00 36.44 3.55
176 177 3.755378 CCTCTTGAAGGGACAATTCACAG 59.245 47.826 0.00 0.00 42.03 3.66
177 178 3.394274 TCCTCTTGAAGGGACAATTCACA 59.606 43.478 0.00 0.00 46.23 3.58
178 179 4.021102 TCCTCTTGAAGGGACAATTCAC 57.979 45.455 0.00 0.00 46.23 3.18
186 187 1.064825 GGGTTGTCCTCTTGAAGGGA 58.935 55.000 0.00 0.00 46.23 4.20
187 188 0.771127 TGGGTTGTCCTCTTGAAGGG 59.229 55.000 0.00 0.00 46.23 3.95
189 190 2.638480 TGTGGGTTGTCCTCTTGAAG 57.362 50.000 0.00 0.00 36.20 3.02
190 191 2.711009 AGATGTGGGTTGTCCTCTTGAA 59.289 45.455 0.00 0.00 36.20 2.69
191 192 2.338809 AGATGTGGGTTGTCCTCTTGA 58.661 47.619 0.00 0.00 36.20 3.02
192 193 2.867109 AGATGTGGGTTGTCCTCTTG 57.133 50.000 0.00 0.00 36.20 3.02
193 194 3.138283 TGAAAGATGTGGGTTGTCCTCTT 59.862 43.478 0.00 0.00 36.20 2.85
194 195 2.711009 TGAAAGATGTGGGTTGTCCTCT 59.289 45.455 0.00 0.00 36.20 3.69
195 196 3.140325 TGAAAGATGTGGGTTGTCCTC 57.860 47.619 0.00 0.00 36.20 3.71
196 197 3.138283 TCTTGAAAGATGTGGGTTGTCCT 59.862 43.478 0.00 0.00 36.20 3.85
197 198 3.486383 TCTTGAAAGATGTGGGTTGTCC 58.514 45.455 0.00 0.00 0.00 4.02
198 199 4.261614 GGTTCTTGAAAGATGTGGGTTGTC 60.262 45.833 0.00 0.00 34.49 3.18
199 200 3.636764 GGTTCTTGAAAGATGTGGGTTGT 59.363 43.478 0.00 0.00 34.49 3.32
200 201 3.636300 TGGTTCTTGAAAGATGTGGGTTG 59.364 43.478 0.00 0.00 34.49 3.77
201 202 3.909732 TGGTTCTTGAAAGATGTGGGTT 58.090 40.909 0.00 0.00 34.49 4.11
202 203 3.593442 TGGTTCTTGAAAGATGTGGGT 57.407 42.857 0.00 0.00 34.49 4.51
203 204 3.304659 CGTTGGTTCTTGAAAGATGTGGG 60.305 47.826 0.00 0.00 34.49 4.61
204 205 3.853307 GCGTTGGTTCTTGAAAGATGTGG 60.853 47.826 0.00 0.00 34.49 4.17
205 206 3.243035 TGCGTTGGTTCTTGAAAGATGTG 60.243 43.478 0.00 0.00 34.49 3.21
206 207 2.948979 TGCGTTGGTTCTTGAAAGATGT 59.051 40.909 0.00 0.00 34.49 3.06
207 208 3.624326 TGCGTTGGTTCTTGAAAGATG 57.376 42.857 0.00 0.00 34.49 2.90
208 209 4.853924 AATGCGTTGGTTCTTGAAAGAT 57.146 36.364 0.00 0.00 34.49 2.40
209 210 5.759506 TTAATGCGTTGGTTCTTGAAAGA 57.240 34.783 0.08 0.00 0.00 2.52
210 211 6.820470 TTTTAATGCGTTGGTTCTTGAAAG 57.180 33.333 0.08 0.00 0.00 2.62
211 212 6.143118 CGATTTTAATGCGTTGGTTCTTGAAA 59.857 34.615 0.08 0.00 0.00 2.69
212 213 5.627367 CGATTTTAATGCGTTGGTTCTTGAA 59.373 36.000 0.08 0.00 0.00 2.69
213 214 5.150683 CGATTTTAATGCGTTGGTTCTTGA 58.849 37.500 0.08 0.00 0.00 3.02
214 215 4.201485 GCGATTTTAATGCGTTGGTTCTTG 60.201 41.667 0.08 0.00 0.00 3.02
215 216 3.917985 GCGATTTTAATGCGTTGGTTCTT 59.082 39.130 0.08 0.00 0.00 2.52
216 217 3.190535 AGCGATTTTAATGCGTTGGTTCT 59.809 39.130 0.08 0.00 0.00 3.01
217 218 3.300590 CAGCGATTTTAATGCGTTGGTTC 59.699 43.478 0.08 0.00 33.55 3.62
218 219 3.241701 CAGCGATTTTAATGCGTTGGTT 58.758 40.909 0.08 0.00 33.55 3.67
219 220 2.415357 CCAGCGATTTTAATGCGTTGGT 60.415 45.455 15.10 0.00 46.69 3.67
220 221 2.184448 CCAGCGATTTTAATGCGTTGG 58.816 47.619 0.08 11.45 46.71 3.77
221 222 2.184448 CCCAGCGATTTTAATGCGTTG 58.816 47.619 0.08 0.00 36.28 4.10
222 223 1.816224 ACCCAGCGATTTTAATGCGTT 59.184 42.857 0.00 0.00 0.00 4.84
223 224 1.459450 ACCCAGCGATTTTAATGCGT 58.541 45.000 0.00 0.00 0.00 5.24
224 225 2.559998 AACCCAGCGATTTTAATGCG 57.440 45.000 0.00 0.00 0.00 4.73
245 246 8.533569 AAACCTCTCCAATACAAAGAGAAAAA 57.466 30.769 0.31 0.00 39.09 1.94
246 247 8.533569 AAAACCTCTCCAATACAAAGAGAAAA 57.466 30.769 0.31 0.00 39.09 2.29
247 248 8.533569 AAAAACCTCTCCAATACAAAGAGAAA 57.466 30.769 0.31 0.00 39.09 2.52
248 249 7.777910 TGAAAAACCTCTCCAATACAAAGAGAA 59.222 33.333 0.31 0.00 39.09 2.87
249 250 7.228706 GTGAAAAACCTCTCCAATACAAAGAGA 59.771 37.037 0.31 0.00 39.09 3.10
250 251 7.363431 GTGAAAAACCTCTCCAATACAAAGAG 58.637 38.462 0.00 0.00 36.99 2.85
251 252 6.017440 CGTGAAAAACCTCTCCAATACAAAGA 60.017 38.462 0.00 0.00 0.00 2.52
252 253 6.142817 CGTGAAAAACCTCTCCAATACAAAG 58.857 40.000 0.00 0.00 0.00 2.77
253 254 5.591067 ACGTGAAAAACCTCTCCAATACAAA 59.409 36.000 0.00 0.00 0.00 2.83
254 255 5.127491 ACGTGAAAAACCTCTCCAATACAA 58.873 37.500 0.00 0.00 0.00 2.41
255 256 4.710324 ACGTGAAAAACCTCTCCAATACA 58.290 39.130 0.00 0.00 0.00 2.29
256 257 5.684550 AACGTGAAAAACCTCTCCAATAC 57.315 39.130 0.00 0.00 0.00 1.89
257 258 7.804843 TTTAACGTGAAAAACCTCTCCAATA 57.195 32.000 0.00 0.00 0.00 1.90
258 259 6.702716 TTTAACGTGAAAAACCTCTCCAAT 57.297 33.333 0.00 0.00 0.00 3.16
259 260 6.512342 TTTTAACGTGAAAAACCTCTCCAA 57.488 33.333 8.42 0.00 0.00 3.53
260 261 6.512091 CGATTTTAACGTGAAAAACCTCTCCA 60.512 38.462 14.71 0.00 32.29 3.86
261 262 5.849604 CGATTTTAACGTGAAAAACCTCTCC 59.150 40.000 14.71 0.00 32.29 3.71
262 263 5.338822 GCGATTTTAACGTGAAAAACCTCTC 59.661 40.000 14.71 6.73 32.29 3.20
263 264 5.209977 GCGATTTTAACGTGAAAAACCTCT 58.790 37.500 14.71 0.00 32.29 3.69
264 265 4.971220 TGCGATTTTAACGTGAAAAACCTC 59.029 37.500 14.71 7.40 32.29 3.85
265 266 4.922719 TGCGATTTTAACGTGAAAAACCT 58.077 34.783 14.71 0.00 32.29 3.50
266 267 5.174216 ACATGCGATTTTAACGTGAAAAACC 59.826 36.000 14.71 8.88 32.29 3.27
267 268 6.141685 AGACATGCGATTTTAACGTGAAAAAC 59.858 34.615 14.71 11.14 32.29 2.43
268 269 6.202937 AGACATGCGATTTTAACGTGAAAAA 58.797 32.000 14.71 12.34 32.29 1.94
269 270 5.753744 AGACATGCGATTTTAACGTGAAAA 58.246 33.333 13.18 13.18 33.04 2.29
270 271 5.351233 AGACATGCGATTTTAACGTGAAA 57.649 34.783 0.00 0.00 0.00 2.69
271 272 5.351233 AAGACATGCGATTTTAACGTGAA 57.649 34.783 0.00 0.00 0.00 3.18
272 273 5.351233 AAAGACATGCGATTTTAACGTGA 57.649 34.783 0.00 0.00 0.00 4.35
273 274 6.432802 AAAAAGACATGCGATTTTAACGTG 57.567 33.333 0.00 0.00 0.00 4.49
274 275 5.338559 CGAAAAAGACATGCGATTTTAACGT 59.661 36.000 0.00 0.00 0.00 3.99
275 276 5.338559 ACGAAAAAGACATGCGATTTTAACG 59.661 36.000 17.56 17.56 34.83 3.18
276 277 6.669485 ACGAAAAAGACATGCGATTTTAAC 57.331 33.333 0.00 0.00 0.00 2.01
277 278 7.136119 AGAACGAAAAAGACATGCGATTTTAA 58.864 30.769 0.00 0.00 0.00 1.52
278 279 6.664515 AGAACGAAAAAGACATGCGATTTTA 58.335 32.000 0.00 0.00 0.00 1.52
279 280 5.519722 AGAACGAAAAAGACATGCGATTTT 58.480 33.333 0.00 0.00 0.00 1.82
280 281 5.108385 AGAACGAAAAAGACATGCGATTT 57.892 34.783 0.00 0.00 0.00 2.17
281 282 4.749245 AGAACGAAAAAGACATGCGATT 57.251 36.364 0.00 0.00 0.00 3.34
282 283 4.466828 CAAGAACGAAAAAGACATGCGAT 58.533 39.130 0.00 0.00 0.00 4.58
283 284 3.303725 CCAAGAACGAAAAAGACATGCGA 60.304 43.478 0.00 0.00 0.00 5.10
284 285 2.973224 CCAAGAACGAAAAAGACATGCG 59.027 45.455 0.00 0.00 0.00 4.73
285 286 3.964909 ACCAAGAACGAAAAAGACATGC 58.035 40.909 0.00 0.00 0.00 4.06
286 287 4.211389 CGACCAAGAACGAAAAAGACATG 58.789 43.478 0.00 0.00 0.00 3.21
287 288 3.875134 ACGACCAAGAACGAAAAAGACAT 59.125 39.130 0.00 0.00 0.00 3.06
288 289 3.264104 ACGACCAAGAACGAAAAAGACA 58.736 40.909 0.00 0.00 0.00 3.41
289 290 3.938778 ACGACCAAGAACGAAAAAGAC 57.061 42.857 0.00 0.00 0.00 3.01
290 291 4.392445 TCAAACGACCAAGAACGAAAAAGA 59.608 37.500 0.00 0.00 0.00 2.52
291 292 4.654015 TCAAACGACCAAGAACGAAAAAG 58.346 39.130 0.00 0.00 0.00 2.27
292 293 4.392445 TCTCAAACGACCAAGAACGAAAAA 59.608 37.500 0.00 0.00 0.00 1.94
293 294 3.933955 TCTCAAACGACCAAGAACGAAAA 59.066 39.130 0.00 0.00 0.00 2.29
294 295 3.307782 GTCTCAAACGACCAAGAACGAAA 59.692 43.478 0.00 0.00 0.00 3.46
295 296 2.861935 GTCTCAAACGACCAAGAACGAA 59.138 45.455 0.00 0.00 0.00 3.85
296 297 2.100252 AGTCTCAAACGACCAAGAACGA 59.900 45.455 0.00 0.00 34.46 3.85
297 298 2.218759 CAGTCTCAAACGACCAAGAACG 59.781 50.000 0.00 0.00 34.46 3.95
298 299 2.544267 CCAGTCTCAAACGACCAAGAAC 59.456 50.000 0.00 0.00 34.46 3.01
299 300 2.484770 CCCAGTCTCAAACGACCAAGAA 60.485 50.000 0.00 0.00 34.46 2.52
300 301 1.070134 CCCAGTCTCAAACGACCAAGA 59.930 52.381 0.00 0.00 34.46 3.02
301 302 1.070134 TCCCAGTCTCAAACGACCAAG 59.930 52.381 0.00 0.00 34.46 3.61
302 303 1.070134 CTCCCAGTCTCAAACGACCAA 59.930 52.381 0.00 0.00 34.46 3.67
303 304 0.679505 CTCCCAGTCTCAAACGACCA 59.320 55.000 0.00 0.00 34.46 4.02
304 305 0.966920 TCTCCCAGTCTCAAACGACC 59.033 55.000 0.00 0.00 34.46 4.79
305 306 1.067495 CCTCTCCCAGTCTCAAACGAC 60.067 57.143 0.00 0.00 0.00 4.34
306 307 1.257743 CCTCTCCCAGTCTCAAACGA 58.742 55.000 0.00 0.00 0.00 3.85
307 308 0.969894 ACCTCTCCCAGTCTCAAACG 59.030 55.000 0.00 0.00 0.00 3.60
308 309 1.609320 GCACCTCTCCCAGTCTCAAAC 60.609 57.143 0.00 0.00 0.00 2.93
309 310 0.687354 GCACCTCTCCCAGTCTCAAA 59.313 55.000 0.00 0.00 0.00 2.69
310 311 0.471780 TGCACCTCTCCCAGTCTCAA 60.472 55.000 0.00 0.00 0.00 3.02
311 312 0.471780 TTGCACCTCTCCCAGTCTCA 60.472 55.000 0.00 0.00 0.00 3.27
312 313 0.036858 GTTGCACCTCTCCCAGTCTC 60.037 60.000 0.00 0.00 0.00 3.36
313 314 0.472734 AGTTGCACCTCTCCCAGTCT 60.473 55.000 0.00 0.00 0.00 3.24
314 315 1.267121 TAGTTGCACCTCTCCCAGTC 58.733 55.000 0.00 0.00 0.00 3.51
315 316 1.625818 CTTAGTTGCACCTCTCCCAGT 59.374 52.381 0.00 0.00 0.00 4.00
316 317 1.065854 CCTTAGTTGCACCTCTCCCAG 60.066 57.143 0.00 0.00 0.00 4.45
317 318 0.984230 CCTTAGTTGCACCTCTCCCA 59.016 55.000 0.00 0.00 0.00 4.37
318 319 1.276622 TCCTTAGTTGCACCTCTCCC 58.723 55.000 0.00 0.00 0.00 4.30
319 320 2.420687 CCATCCTTAGTTGCACCTCTCC 60.421 54.545 0.00 0.00 0.00 3.71
320 321 2.911484 CCATCCTTAGTTGCACCTCTC 58.089 52.381 0.00 0.00 0.00 3.20
321 322 1.065126 GCCATCCTTAGTTGCACCTCT 60.065 52.381 0.00 0.00 0.00 3.69
322 323 1.340017 TGCCATCCTTAGTTGCACCTC 60.340 52.381 0.00 0.00 0.00 3.85
323 324 0.698238 TGCCATCCTTAGTTGCACCT 59.302 50.000 0.00 0.00 0.00 4.00
324 325 1.544724 TTGCCATCCTTAGTTGCACC 58.455 50.000 0.00 0.00 0.00 5.01
325 326 2.159198 CCATTGCCATCCTTAGTTGCAC 60.159 50.000 0.00 0.00 0.00 4.57
326 327 2.101783 CCATTGCCATCCTTAGTTGCA 58.898 47.619 0.00 0.00 0.00 4.08
327 328 1.410153 CCCATTGCCATCCTTAGTTGC 59.590 52.381 0.00 0.00 0.00 4.17
433 434 9.255029 GGTATGGGTATGGCTAAAATTTCATAT 57.745 33.333 0.00 0.00 0.00 1.78
489 490 5.730550 TGTGTACTTTGTGATCTACCCATC 58.269 41.667 0.00 0.00 0.00 3.51
611 621 9.994432 GAACATAAAGTTATCTCCAATTGTCAG 57.006 33.333 4.43 0.00 41.51 3.51
692 707 4.452167 ACCCATGGATATACCCATACCT 57.548 45.455 15.22 0.00 44.69 3.08
767 784 7.617723 GGTATGGGCATAATTTTATACCATGGA 59.382 37.037 21.47 2.01 38.95 3.41
845 866 4.084287 ACAGTCGTTGTACCTAAGGATGA 58.916 43.478 0.00 0.00 38.56 2.92
855 876 4.110482 CTGGCCTTATACAGTCGTTGTAC 58.890 47.826 3.32 0.00 44.68 2.90
857 878 2.093658 CCTGGCCTTATACAGTCGTTGT 60.094 50.000 3.32 1.37 43.96 3.32
862 883 3.243724 AGGATCCTGGCCTTATACAGTC 58.756 50.000 15.29 0.00 32.90 3.51
863 884 3.116551 AGAGGATCCTGGCCTTATACAGT 60.117 47.826 22.02 0.00 35.44 3.55
864 885 3.515562 AGAGGATCCTGGCCTTATACAG 58.484 50.000 22.02 0.00 35.44 2.74
865 886 3.637821 AGAGGATCCTGGCCTTATACA 57.362 47.619 22.02 0.00 35.44 2.29
866 887 4.027437 CCTAGAGGATCCTGGCCTTATAC 58.973 52.174 22.02 0.37 35.44 1.47
867 888 3.012959 CCCTAGAGGATCCTGGCCTTATA 59.987 52.174 22.02 0.00 38.24 0.98
868 889 2.225753 CCCTAGAGGATCCTGGCCTTAT 60.226 54.545 22.02 0.00 38.24 1.73
869 890 1.150135 CCCTAGAGGATCCTGGCCTTA 59.850 57.143 22.02 2.89 38.24 2.69
870 891 0.104725 CCCTAGAGGATCCTGGCCTT 60.105 60.000 22.02 1.74 38.24 4.35
871 892 1.307976 ACCCTAGAGGATCCTGGCCT 61.308 60.000 22.02 13.01 39.89 5.19
872 893 0.400670 AACCCTAGAGGATCCTGGCC 60.401 60.000 22.02 4.66 39.89 5.36
873 894 1.512735 AAACCCTAGAGGATCCTGGC 58.487 55.000 22.02 5.53 39.89 4.85
874 895 4.722279 ACTTTAAACCCTAGAGGATCCTGG 59.278 45.833 22.02 16.78 39.89 4.45
875 896 5.396884 CCACTTTAAACCCTAGAGGATCCTG 60.397 48.000 22.02 6.76 39.89 3.86
876 897 4.722279 CCACTTTAAACCCTAGAGGATCCT 59.278 45.833 16.13 16.13 39.89 3.24
877 898 4.720273 TCCACTTTAAACCCTAGAGGATCC 59.280 45.833 2.48 2.48 39.89 3.36
878 899 5.952347 TCCACTTTAAACCCTAGAGGATC 57.048 43.478 0.00 0.00 39.89 3.36
879 900 5.045066 GGTTCCACTTTAAACCCTAGAGGAT 60.045 44.000 0.00 0.00 39.23 3.24
880 901 4.287845 GGTTCCACTTTAAACCCTAGAGGA 59.712 45.833 0.00 0.00 39.23 3.71
881 902 4.288887 AGGTTCCACTTTAAACCCTAGAGG 59.711 45.833 0.00 0.00 44.98 3.69
882 903 5.500546 AGGTTCCACTTTAAACCCTAGAG 57.499 43.478 0.00 0.00 44.98 2.43
883 904 5.917545 AAGGTTCCACTTTAAACCCTAGA 57.082 39.130 0.00 0.00 44.98 2.43
922 947 4.403432 TCCTGATTATTAGTCGGTTCCGTT 59.597 41.667 11.04 4.08 0.00 4.44
948 973 3.828786 CGTGCGTGCCTGTGTATATATA 58.171 45.455 0.00 0.00 0.00 0.86
984 1009 0.319383 CCATCTTCGGCCAGAGATCG 60.319 60.000 13.49 5.45 0.00 3.69
1308 1342 1.657751 CGATCCACTGGTCGAGCAGA 61.658 60.000 42.09 25.68 40.11 4.26
1359 1393 1.428620 GTACCTGAGCTCGACGTCC 59.571 63.158 10.58 0.00 0.00 4.79
1421 1455 1.966354 AGTTTTTCCGTCCGTAGAGGT 59.034 47.619 0.00 0.00 41.99 3.85
1695 1732 3.023949 GCTGGCCACCGTGATCTCT 62.024 63.158 0.00 0.00 0.00 3.10
1904 1941 2.094659 GGTGCGATGTCGTCTGGTG 61.095 63.158 4.20 0.00 42.22 4.17
1920 1969 1.664321 GGATGAGCGTAGTGACCGGT 61.664 60.000 6.92 6.92 38.96 5.28
1929 1978 2.104928 CAGCTGCGGATGAGCGTA 59.895 61.111 4.30 0.00 41.61 4.42
1959 2008 4.336280 GCAAGGAAAGGTGGAGATACTTT 58.664 43.478 0.00 0.00 37.16 2.66
2293 2372 2.263741 CCAAGCACCTGACCTGCAC 61.264 63.158 0.00 0.00 37.08 4.57
2294 2373 2.113774 CCAAGCACCTGACCTGCA 59.886 61.111 0.00 0.00 37.08 4.41
2298 2377 0.250727 TGTAAGCCAAGCACCTGACC 60.251 55.000 0.00 0.00 0.00 4.02
2320 2399 7.771927 AGTTTCCAATGTTGATTCTTCTCAT 57.228 32.000 0.00 0.00 0.00 2.90
2345 2424 4.394712 CGAGAGGCCGCCCTTTGT 62.395 66.667 5.55 0.00 43.12 2.83
2347 2426 2.406002 TTTTCGAGAGGCCGCCCTTT 62.406 55.000 5.55 0.00 43.12 3.11
2473 2552 1.006832 CGGTTTTGTCGCCAGGATAG 58.993 55.000 0.00 0.00 0.00 2.08
2490 2569 3.189910 TGCATATTACTCTAGTACGGCGG 59.810 47.826 13.24 0.00 0.00 6.13
2665 2753 9.109393 AGCTGAGTTAATTTTGCTCGAATATAA 57.891 29.630 0.00 0.00 32.32 0.98
2759 2894 1.080974 GCAAGTCATGTGCCAGTGC 60.081 57.895 0.00 0.00 35.91 4.40
2760 2895 0.039798 GTGCAAGTCATGTGCCAGTG 60.040 55.000 4.51 0.00 41.49 3.66
2761 2896 0.179009 AGTGCAAGTCATGTGCCAGT 60.179 50.000 4.51 0.00 41.49 4.00
2762 2897 0.240145 CAGTGCAAGTCATGTGCCAG 59.760 55.000 4.51 0.00 41.49 4.85
2763 2898 1.174078 CCAGTGCAAGTCATGTGCCA 61.174 55.000 4.51 0.00 41.49 4.92
2764 2899 1.582968 CCAGTGCAAGTCATGTGCC 59.417 57.895 4.51 0.00 41.49 5.01
2765 2900 1.080974 GCCAGTGCAAGTCATGTGC 60.081 57.895 0.00 0.00 42.55 4.57
2766 2901 2.333291 TGCCAGTGCAAGTCATGTG 58.667 52.632 0.00 0.00 46.66 3.21
2767 2902 4.905240 TGCCAGTGCAAGTCATGT 57.095 50.000 0.00 0.00 46.66 3.21
2776 2911 1.080974 GCAAGTCATGTGCCAGTGC 60.081 57.895 0.00 0.00 35.91 4.40
2777 2912 0.039798 GTGCAAGTCATGTGCCAGTG 60.040 55.000 4.51 0.00 41.49 3.66
2778 2913 0.179009 AGTGCAAGTCATGTGCCAGT 60.179 50.000 4.51 0.00 41.49 4.00
2779 2914 0.240145 CAGTGCAAGTCATGTGCCAG 59.760 55.000 4.51 0.00 41.49 4.85
2780 2915 1.174078 CCAGTGCAAGTCATGTGCCA 61.174 55.000 4.51 0.00 41.49 4.92
2781 2916 1.582968 CCAGTGCAAGTCATGTGCC 59.417 57.895 4.51 0.00 41.49 5.01
2782 2917 1.080974 GCCAGTGCAAGTCATGTGC 60.081 57.895 0.00 0.00 42.55 4.57
2783 2918 2.333291 TGCCAGTGCAAGTCATGTG 58.667 52.632 0.00 0.00 46.66 3.21
2784 2919 4.905240 TGCCAGTGCAAGTCATGT 57.095 50.000 0.00 0.00 46.66 3.21
2829 2964 4.764823 ACAGTTTGTTTGTTCCAACTCAGA 59.235 37.500 0.00 0.00 0.00 3.27
2864 2999 8.550710 TTTCAAGCAGCTTAAATAATGCATTT 57.449 26.923 18.75 2.80 41.14 2.32
2928 3063 1.465777 TGCTGATCTTGCAACATCACG 59.534 47.619 12.74 10.33 37.51 4.35
2929 3064 2.415090 GGTGCTGATCTTGCAACATCAC 60.415 50.000 19.38 12.24 46.39 3.06
3038 3180 9.556030 GTTCTGTTCCTTTTATACTTTGCATAC 57.444 33.333 0.00 0.00 0.00 2.39
3061 3203 9.503427 GGTAGTATATGCTTGTTTTCATTGTTC 57.497 33.333 0.00 0.00 0.00 3.18
3089 3231 3.421919 TTCAGATTGACATGCACTCCA 57.578 42.857 0.00 0.00 0.00 3.86
3096 3706 6.694877 ATCATCAGGTTTCAGATTGACATG 57.305 37.500 0.00 0.00 0.00 3.21
3159 3771 1.970640 GTTTCAGGGGAATTGCCTTGT 59.029 47.619 24.28 4.33 36.66 3.16
3160 3772 2.250924 AGTTTCAGGGGAATTGCCTTG 58.749 47.619 20.40 20.40 36.66 3.61
3184 3816 3.691609 TGTGCAAATATGTGACGCCATAA 59.308 39.130 0.00 0.00 31.44 1.90
3251 3888 3.138839 TGGCAGGTCACCATATTGATCAT 59.861 43.478 0.00 0.00 30.29 2.45
3400 4048 6.486657 TGAGTAACTTCTTGGAAATTGGTCTG 59.513 38.462 0.00 0.00 0.00 3.51
3444 4092 3.065925 GTGAGTGGCTATTTGGAGAATGC 59.934 47.826 0.00 0.00 0.00 3.56
3445 4093 4.521146 AGTGAGTGGCTATTTGGAGAATG 58.479 43.478 0.00 0.00 0.00 2.67
3446 4094 4.851639 AGTGAGTGGCTATTTGGAGAAT 57.148 40.909 0.00 0.00 0.00 2.40
3447 4095 5.957771 ATAGTGAGTGGCTATTTGGAGAA 57.042 39.130 0.00 0.00 0.00 2.87
3448 4096 5.957771 AATAGTGAGTGGCTATTTGGAGA 57.042 39.130 0.00 0.00 36.15 3.71
3449 4097 5.529060 GGAAATAGTGAGTGGCTATTTGGAG 59.471 44.000 13.03 0.00 44.43 3.86
3450 4098 5.045213 TGGAAATAGTGAGTGGCTATTTGGA 60.045 40.000 13.03 0.40 44.43 3.53
3451 4099 5.066505 GTGGAAATAGTGAGTGGCTATTTGG 59.933 44.000 13.03 0.00 44.43 3.28
3459 4107 8.593679 TGGTATATATGTGGAAATAGTGAGTGG 58.406 37.037 0.00 0.00 0.00 4.00
3490 4138 8.934023 TCCTCCATTTACAGTCTACAATTTTT 57.066 30.769 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.