Multiple sequence alignment - TraesCS2D01G489400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G489400 chr2D 100.000 4101 0 0 1 4101 588451813 588455913 0.000000e+00 7574
1 TraesCS2D01G489400 chr2D 96.552 696 24 0 3406 4101 160355533 160354838 0.000000e+00 1153
2 TraesCS2D01G489400 chr2D 96.286 700 23 2 3405 4101 133650548 133649849 0.000000e+00 1146
3 TraesCS2D01G489400 chr2D 96.280 699 25 1 3404 4101 508199314 508198616 0.000000e+00 1146
4 TraesCS2D01G489400 chr2D 89.391 886 76 5 1321 2206 588175607 588174740 0.000000e+00 1099
5 TraesCS2D01G489400 chr2D 77.936 911 152 34 1341 2233 588435393 588436272 1.310000e-144 523
6 TraesCS2D01G489400 chr2D 76.267 868 152 34 1345 2200 588248461 588249286 2.950000e-111 412
7 TraesCS2D01G489400 chr2B 92.759 2541 119 21 358 2863 711981185 711983695 0.000000e+00 3613
8 TraesCS2D01G489400 chr2B 85.825 1813 195 36 1321 3106 711321116 711319339 0.000000e+00 1868
9 TraesCS2D01G489400 chr2B 77.998 909 156 29 1341 2233 711867336 711868216 7.810000e-147 531
10 TraesCS2D01G489400 chr2B 91.641 323 23 4 2881 3201 711983916 711984236 1.050000e-120 444
11 TraesCS2D01G489400 chr2B 75.810 864 163 27 1345 2200 711726119 711726944 2.970000e-106 396
12 TraesCS2D01G489400 chr2B 91.519 283 22 2 78 359 27935412 27935693 4.970000e-104 388
13 TraesCS2D01G489400 chr2B 90.845 284 25 1 75 357 3213217 3212934 2.990000e-101 379
14 TraesCS2D01G489400 chr2B 88.591 298 31 2 66 361 765576544 765576840 3.900000e-95 359
15 TraesCS2D01G489400 chr2B 86.842 114 11 4 3245 3357 153887866 153887976 1.550000e-24 124
16 TraesCS2D01G489400 chr2A 90.344 2527 138 36 395 2862 723065447 723067926 0.000000e+00 3217
17 TraesCS2D01G489400 chr2A 85.604 1806 206 33 1321 3110 722756508 722754741 0.000000e+00 1845
18 TraesCS2D01G489400 chr2A 92.838 377 23 3 2874 3246 723067969 723068345 1.000000e-150 544
19 TraesCS2D01G489400 chr2A 75.346 868 160 33 1345 2200 722839861 722840686 6.480000e-98 368
20 TraesCS2D01G489400 chr2A 82.278 158 23 3 3246 3399 643805521 643805677 9.250000e-27 132
21 TraesCS2D01G489400 chr6D 96.413 697 24 1 3406 4101 408117916 408117220 0.000000e+00 1147
22 TraesCS2D01G489400 chr3D 96.408 696 25 0 3406 4101 496297235 496297930 0.000000e+00 1147
23 TraesCS2D01G489400 chr1D 96.413 697 24 1 3406 4101 31434159 31433463 0.000000e+00 1147
24 TraesCS2D01G489400 chr1D 96.275 698 25 1 3405 4101 83748902 83748205 0.000000e+00 1144
25 TraesCS2D01G489400 chr1D 83.333 132 17 5 3243 3373 485577036 485576909 2.590000e-22 117
26 TraesCS2D01G489400 chr4D 96.270 697 25 1 3406 4101 347183867 347183171 0.000000e+00 1142
27 TraesCS2D01G489400 chr4D 96.264 696 26 0 3406 4101 352981016 352980321 0.000000e+00 1142
28 TraesCS2D01G489400 chr5D 98.050 359 7 0 1 359 552067022 552067380 3.480000e-175 625
29 TraesCS2D01G489400 chr5D 89.474 361 36 2 1 359 498296314 498295954 4.830000e-124 455
30 TraesCS2D01G489400 chr5D 88.462 182 21 0 176 357 498298040 498298221 1.920000e-53 220
31 TraesCS2D01G489400 chr5B 88.433 268 27 4 97 363 105516684 105516420 1.840000e-83 320
32 TraesCS2D01G489400 chr5B 87.857 140 12 3 3265 3400 289167182 289167044 4.240000e-35 159
33 TraesCS2D01G489400 chr3A 82.353 255 41 3 106 359 560778345 560778596 6.900000e-53 219
34 TraesCS2D01G489400 chr1A 87.368 190 22 2 176 364 99616487 99616675 2.480000e-52 217
35 TraesCS2D01G489400 chrUn 86.325 117 15 1 3248 3363 54328632 54328516 4.300000e-25 126
36 TraesCS2D01G489400 chr3B 83.333 138 17 6 3244 3377 191211130 191210995 5.570000e-24 122
37 TraesCS2D01G489400 chr5A 82.482 137 17 7 3244 3376 626088628 626088495 3.350000e-21 113
38 TraesCS2D01G489400 chr4B 82.482 137 17 7 3244 3376 104566603 104566470 3.350000e-21 113
39 TraesCS2D01G489400 chr7B 82.014 139 18 4 3265 3399 226180213 226180348 1.210000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G489400 chr2D 588451813 588455913 4100 False 7574.0 7574 100.000 1 4101 1 chr2D.!!$F3 4100
1 TraesCS2D01G489400 chr2D 160354838 160355533 695 True 1153.0 1153 96.552 3406 4101 1 chr2D.!!$R2 695
2 TraesCS2D01G489400 chr2D 133649849 133650548 699 True 1146.0 1146 96.286 3405 4101 1 chr2D.!!$R1 696
3 TraesCS2D01G489400 chr2D 508198616 508199314 698 True 1146.0 1146 96.280 3404 4101 1 chr2D.!!$R3 697
4 TraesCS2D01G489400 chr2D 588174740 588175607 867 True 1099.0 1099 89.391 1321 2206 1 chr2D.!!$R4 885
5 TraesCS2D01G489400 chr2D 588435393 588436272 879 False 523.0 523 77.936 1341 2233 1 chr2D.!!$F2 892
6 TraesCS2D01G489400 chr2D 588248461 588249286 825 False 412.0 412 76.267 1345 2200 1 chr2D.!!$F1 855
7 TraesCS2D01G489400 chr2B 711981185 711984236 3051 False 2028.5 3613 92.200 358 3201 2 chr2B.!!$F6 2843
8 TraesCS2D01G489400 chr2B 711319339 711321116 1777 True 1868.0 1868 85.825 1321 3106 1 chr2B.!!$R2 1785
9 TraesCS2D01G489400 chr2B 711867336 711868216 880 False 531.0 531 77.998 1341 2233 1 chr2B.!!$F4 892
10 TraesCS2D01G489400 chr2B 711726119 711726944 825 False 396.0 396 75.810 1345 2200 1 chr2B.!!$F3 855
11 TraesCS2D01G489400 chr2A 723065447 723068345 2898 False 1880.5 3217 91.591 395 3246 2 chr2A.!!$F3 2851
12 TraesCS2D01G489400 chr2A 722754741 722756508 1767 True 1845.0 1845 85.604 1321 3110 1 chr2A.!!$R1 1789
13 TraesCS2D01G489400 chr2A 722839861 722840686 825 False 368.0 368 75.346 1345 2200 1 chr2A.!!$F2 855
14 TraesCS2D01G489400 chr6D 408117220 408117916 696 True 1147.0 1147 96.413 3406 4101 1 chr6D.!!$R1 695
15 TraesCS2D01G489400 chr3D 496297235 496297930 695 False 1147.0 1147 96.408 3406 4101 1 chr3D.!!$F1 695
16 TraesCS2D01G489400 chr1D 31433463 31434159 696 True 1147.0 1147 96.413 3406 4101 1 chr1D.!!$R1 695
17 TraesCS2D01G489400 chr1D 83748205 83748902 697 True 1144.0 1144 96.275 3405 4101 1 chr1D.!!$R2 696
18 TraesCS2D01G489400 chr4D 347183171 347183867 696 True 1142.0 1142 96.270 3406 4101 1 chr4D.!!$R1 695
19 TraesCS2D01G489400 chr4D 352980321 352981016 695 True 1142.0 1142 96.264 3406 4101 1 chr4D.!!$R2 695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 265 0.027586 CCGTATTTGCACGCCTAAGC 59.972 55.000 0.00 0.0 40.59 3.09 F
265 266 0.027586 CGTATTTGCACGCCTAAGCC 59.972 55.000 0.00 0.0 34.78 4.35 F
344 345 0.034896 ACAAGTTCTAGCACCACCGG 59.965 55.000 0.00 0.0 0.00 5.28 F
1061 1092 0.036732 CACTTCCAGCCTGCCAAGTA 59.963 55.000 6.89 0.0 0.00 2.24 F
1241 1272 1.139058 AGATCCCAATGGTACGTGCTC 59.861 52.381 3.01 0.0 0.00 4.26 F
2642 2730 1.269413 ACCGACCTCACAAAGTACGTG 60.269 52.381 0.00 0.0 35.63 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1159 1190 1.064166 CAGGGATTGCAGACAGGGATT 60.064 52.381 0.00 0.00 0.00 3.01 R
1241 1272 2.946990 GACGGACTAGAGGGAAGAAGAG 59.053 54.545 0.00 0.00 0.00 2.85 R
1317 1348 4.466567 TGACGCAAAATAACTGTCACTG 57.533 40.909 0.00 0.00 34.85 3.66 R
2712 2809 1.542915 ACCTGTGCATGCAAAGATGTC 59.457 47.619 34.90 16.37 33.20 3.06 R
2858 3017 2.113860 ATCGGCCATATGCATGTACC 57.886 50.000 10.16 7.02 43.89 3.34 R
3859 4232 2.134287 GCTGCCACGGGAGGATAGA 61.134 63.158 6.73 0.00 34.01 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.838736 CCTACATGGTTCGATTCCCAG 58.161 52.381 0.00 1.40 33.39 4.45
28 29 2.170607 CCTACATGGTTCGATTCCCAGT 59.829 50.000 0.00 6.16 33.39 4.00
29 30 2.879103 ACATGGTTCGATTCCCAGTT 57.121 45.000 0.00 0.00 33.39 3.16
30 31 3.154827 ACATGGTTCGATTCCCAGTTT 57.845 42.857 0.00 0.00 33.39 2.66
31 32 3.496331 ACATGGTTCGATTCCCAGTTTT 58.504 40.909 0.00 0.00 33.39 2.43
32 33 4.658063 ACATGGTTCGATTCCCAGTTTTA 58.342 39.130 0.00 0.00 33.39 1.52
33 34 5.261216 ACATGGTTCGATTCCCAGTTTTAT 58.739 37.500 0.00 0.00 33.39 1.40
34 35 5.714806 ACATGGTTCGATTCCCAGTTTTATT 59.285 36.000 0.00 0.00 33.39 1.40
35 36 6.887545 ACATGGTTCGATTCCCAGTTTTATTA 59.112 34.615 0.00 0.00 33.39 0.98
36 37 7.559897 ACATGGTTCGATTCCCAGTTTTATTAT 59.440 33.333 0.00 0.00 33.39 1.28
37 38 7.948034 TGGTTCGATTCCCAGTTTTATTATT 57.052 32.000 4.99 0.00 0.00 1.40
38 39 8.356000 TGGTTCGATTCCCAGTTTTATTATTT 57.644 30.769 4.99 0.00 0.00 1.40
39 40 8.808092 TGGTTCGATTCCCAGTTTTATTATTTT 58.192 29.630 4.99 0.00 0.00 1.82
40 41 9.647797 GGTTCGATTCCCAGTTTTATTATTTTT 57.352 29.630 0.00 0.00 0.00 1.94
72 73 3.667448 TGTCGCTGACATATGGAGC 57.333 52.632 15.63 15.63 37.67 4.70
73 74 0.104855 TGTCGCTGACATATGGAGCC 59.895 55.000 18.38 9.55 37.67 4.70
74 75 0.601311 GTCGCTGACATATGGAGCCC 60.601 60.000 18.38 9.28 32.09 5.19
75 76 1.048160 TCGCTGACATATGGAGCCCA 61.048 55.000 18.38 7.11 38.19 5.36
76 77 0.035881 CGCTGACATATGGAGCCCAT 59.964 55.000 18.38 10.96 46.99 4.00
99 100 3.657956 CCAACATTTTGGCACGTGT 57.342 47.368 18.38 0.00 46.09 4.49
100 101 1.486439 CCAACATTTTGGCACGTGTC 58.514 50.000 14.58 14.58 46.09 3.67
101 102 1.202348 CCAACATTTTGGCACGTGTCA 60.202 47.619 20.89 20.89 46.09 3.58
102 103 2.118683 CAACATTTTGGCACGTGTCAG 58.881 47.619 23.53 14.06 0.00 3.51
103 104 0.667993 ACATTTTGGCACGTGTCAGG 59.332 50.000 23.53 15.85 0.00 3.86
104 105 0.950836 CATTTTGGCACGTGTCAGGA 59.049 50.000 23.53 15.82 0.00 3.86
105 106 1.069022 CATTTTGGCACGTGTCAGGAG 60.069 52.381 23.53 10.88 0.00 3.69
106 107 1.444119 TTTTGGCACGTGTCAGGAGC 61.444 55.000 23.53 2.72 0.00 4.70
107 108 2.324014 TTTGGCACGTGTCAGGAGCT 62.324 55.000 23.53 0.00 0.00 4.09
108 109 1.468506 TTGGCACGTGTCAGGAGCTA 61.469 55.000 23.53 4.16 0.00 3.32
109 110 1.257750 TGGCACGTGTCAGGAGCTAT 61.258 55.000 20.89 0.00 0.00 2.97
110 111 0.108138 GGCACGTGTCAGGAGCTATT 60.108 55.000 16.80 0.00 0.00 1.73
111 112 1.676014 GGCACGTGTCAGGAGCTATTT 60.676 52.381 16.80 0.00 0.00 1.40
112 113 1.661112 GCACGTGTCAGGAGCTATTTC 59.339 52.381 18.38 0.00 0.00 2.17
113 114 1.920574 CACGTGTCAGGAGCTATTTCG 59.079 52.381 7.58 0.00 0.00 3.46
114 115 1.544691 ACGTGTCAGGAGCTATTTCGT 59.455 47.619 0.00 0.00 0.00 3.85
115 116 1.920574 CGTGTCAGGAGCTATTTCGTG 59.079 52.381 0.00 0.00 35.00 4.35
116 117 2.415491 CGTGTCAGGAGCTATTTCGTGA 60.415 50.000 0.00 0.00 39.04 4.35
117 118 3.182967 GTGTCAGGAGCTATTTCGTGAG 58.817 50.000 0.00 0.00 41.17 3.51
118 119 2.166459 TGTCAGGAGCTATTTCGTGAGG 59.834 50.000 0.00 0.00 41.17 3.86
119 120 2.427453 GTCAGGAGCTATTTCGTGAGGA 59.573 50.000 0.00 0.00 41.17 3.71
120 121 2.427453 TCAGGAGCTATTTCGTGAGGAC 59.573 50.000 0.00 0.00 37.14 3.85
121 122 2.166459 CAGGAGCTATTTCGTGAGGACA 59.834 50.000 0.00 0.00 35.53 4.02
122 123 2.832129 AGGAGCTATTTCGTGAGGACAA 59.168 45.455 0.00 0.00 0.00 3.18
123 124 3.260884 AGGAGCTATTTCGTGAGGACAAA 59.739 43.478 0.00 0.00 0.00 2.83
124 125 4.000988 GGAGCTATTTCGTGAGGACAAAA 58.999 43.478 0.00 0.00 0.00 2.44
125 126 4.454504 GGAGCTATTTCGTGAGGACAAAAA 59.545 41.667 0.00 0.00 0.00 1.94
149 150 9.863845 AAAAATTCGAGTTTCTTTCTGGTAAAA 57.136 25.926 6.35 0.00 0.00 1.52
154 155 8.665643 TCGAGTTTCTTTCTGGTAAAATAACA 57.334 30.769 0.00 0.00 0.00 2.41
155 156 9.280174 TCGAGTTTCTTTCTGGTAAAATAACAT 57.720 29.630 0.00 0.00 0.00 2.71
156 157 9.329913 CGAGTTTCTTTCTGGTAAAATAACATG 57.670 33.333 0.00 0.00 0.00 3.21
157 158 9.129209 GAGTTTCTTTCTGGTAAAATAACATGC 57.871 33.333 0.00 0.00 0.00 4.06
158 159 8.088365 AGTTTCTTTCTGGTAAAATAACATGCC 58.912 33.333 0.00 0.00 0.00 4.40
159 160 7.531857 TTCTTTCTGGTAAAATAACATGCCA 57.468 32.000 0.00 0.00 0.00 4.92
160 161 6.919721 TCTTTCTGGTAAAATAACATGCCAC 58.080 36.000 0.00 0.00 0.00 5.01
161 162 6.491745 TCTTTCTGGTAAAATAACATGCCACA 59.508 34.615 0.00 0.00 0.00 4.17
162 163 5.637006 TCTGGTAAAATAACATGCCACAC 57.363 39.130 0.00 0.00 0.00 3.82
163 164 4.155099 TCTGGTAAAATAACATGCCACACG 59.845 41.667 0.00 0.00 0.00 4.49
164 165 3.821600 TGGTAAAATAACATGCCACACGT 59.178 39.130 0.00 0.00 0.00 4.49
165 166 4.083217 TGGTAAAATAACATGCCACACGTC 60.083 41.667 0.00 0.00 0.00 4.34
166 167 4.083217 GGTAAAATAACATGCCACACGTCA 60.083 41.667 0.00 0.00 0.00 4.35
167 168 4.782019 AAAATAACATGCCACACGTCAT 57.218 36.364 0.00 0.00 0.00 3.06
168 169 4.355543 AAATAACATGCCACACGTCATC 57.644 40.909 0.00 0.00 0.00 2.92
169 170 2.760634 TAACATGCCACACGTCATCT 57.239 45.000 0.00 0.00 0.00 2.90
170 171 1.159285 AACATGCCACACGTCATCTG 58.841 50.000 0.00 0.00 0.00 2.90
171 172 0.674581 ACATGCCACACGTCATCTGG 60.675 55.000 0.00 0.00 0.00 3.86
172 173 0.674581 CATGCCACACGTCATCTGGT 60.675 55.000 0.00 0.00 0.00 4.00
173 174 0.674581 ATGCCACACGTCATCTGGTG 60.675 55.000 0.00 0.00 39.98 4.17
174 175 4.284123 CCACACGTCATCTGGTGG 57.716 61.111 6.14 6.14 44.17 4.61
175 176 2.034879 CCACACGTCATCTGGTGGC 61.035 63.158 7.46 0.00 43.70 5.01
176 177 1.004560 CACACGTCATCTGGTGGCT 60.005 57.895 0.00 0.00 38.46 4.75
177 178 0.246360 CACACGTCATCTGGTGGCTA 59.754 55.000 0.00 0.00 38.46 3.93
178 179 0.973632 ACACGTCATCTGGTGGCTAA 59.026 50.000 0.00 0.00 38.46 3.09
179 180 1.337823 ACACGTCATCTGGTGGCTAAC 60.338 52.381 0.00 0.00 38.46 2.34
180 181 0.973632 ACGTCATCTGGTGGCTAACA 59.026 50.000 0.00 0.00 0.00 2.41
181 182 1.066858 ACGTCATCTGGTGGCTAACAG 60.067 52.381 9.19 9.19 36.07 3.16
187 188 3.574780 GGTGGCTAACAGCGGAAC 58.425 61.111 0.00 0.00 43.62 3.62
188 189 2.038837 GGTGGCTAACAGCGGAACC 61.039 63.158 0.00 1.97 43.62 3.62
189 190 1.003718 GTGGCTAACAGCGGAACCT 60.004 57.895 0.00 0.00 43.62 3.50
190 191 1.003839 TGGCTAACAGCGGAACCTG 60.004 57.895 0.00 0.00 43.62 4.00
191 192 2.399356 GGCTAACAGCGGAACCTGC 61.399 63.158 0.00 0.00 43.62 4.85
192 193 1.671054 GCTAACAGCGGAACCTGCA 60.671 57.895 0.33 0.00 36.29 4.41
193 194 1.912371 GCTAACAGCGGAACCTGCAC 61.912 60.000 0.33 0.00 36.29 4.57
194 195 1.298859 CTAACAGCGGAACCTGCACC 61.299 60.000 0.33 0.00 36.29 5.01
195 196 2.046009 TAACAGCGGAACCTGCACCA 62.046 55.000 0.33 0.00 36.29 4.17
196 197 2.360350 CAGCGGAACCTGCACCAT 60.360 61.111 0.33 0.00 33.85 3.55
197 198 2.360350 AGCGGAACCTGCACCATG 60.360 61.111 0.33 0.00 33.85 3.66
198 199 4.120331 GCGGAACCTGCACCATGC 62.120 66.667 0.00 0.00 45.29 4.06
207 208 2.570181 GCACCATGCAAGTGAGCC 59.430 61.111 20.92 3.23 44.26 4.70
208 209 1.975407 GCACCATGCAAGTGAGCCT 60.975 57.895 20.92 0.00 44.26 4.58
209 210 0.677731 GCACCATGCAAGTGAGCCTA 60.678 55.000 20.92 0.00 44.26 3.93
210 211 1.376543 CACCATGCAAGTGAGCCTAG 58.623 55.000 13.52 0.00 37.42 3.02
211 212 0.987294 ACCATGCAAGTGAGCCTAGT 59.013 50.000 0.00 0.00 0.00 2.57
212 213 1.065854 ACCATGCAAGTGAGCCTAGTC 60.066 52.381 0.00 0.00 0.00 2.59
213 214 1.209019 CCATGCAAGTGAGCCTAGTCT 59.791 52.381 0.00 0.00 0.00 3.24
214 215 2.432146 CCATGCAAGTGAGCCTAGTCTA 59.568 50.000 0.00 0.00 0.00 2.59
215 216 3.070734 CCATGCAAGTGAGCCTAGTCTAT 59.929 47.826 0.00 0.00 0.00 1.98
216 217 3.808466 TGCAAGTGAGCCTAGTCTATG 57.192 47.619 0.00 0.00 0.00 2.23
217 218 3.099905 TGCAAGTGAGCCTAGTCTATGT 58.900 45.455 0.00 0.00 0.00 2.29
218 219 3.131223 TGCAAGTGAGCCTAGTCTATGTC 59.869 47.826 0.00 0.00 0.00 3.06
219 220 3.793801 GCAAGTGAGCCTAGTCTATGTCG 60.794 52.174 0.00 0.00 0.00 4.35
220 221 1.950909 AGTGAGCCTAGTCTATGTCGC 59.049 52.381 0.00 0.00 0.00 5.19
221 222 1.950909 GTGAGCCTAGTCTATGTCGCT 59.049 52.381 0.00 0.00 0.00 4.93
222 223 2.359531 GTGAGCCTAGTCTATGTCGCTT 59.640 50.000 0.00 0.00 0.00 4.68
223 224 3.024547 TGAGCCTAGTCTATGTCGCTTT 58.975 45.455 0.00 0.00 0.00 3.51
224 225 3.066900 TGAGCCTAGTCTATGTCGCTTTC 59.933 47.826 0.00 0.00 0.00 2.62
225 226 3.024547 AGCCTAGTCTATGTCGCTTTCA 58.975 45.455 0.00 0.00 0.00 2.69
226 227 3.639094 AGCCTAGTCTATGTCGCTTTCAT 59.361 43.478 0.00 0.00 0.00 2.57
227 228 4.827835 AGCCTAGTCTATGTCGCTTTCATA 59.172 41.667 0.00 0.00 0.00 2.15
228 229 5.478679 AGCCTAGTCTATGTCGCTTTCATAT 59.521 40.000 0.00 0.00 0.00 1.78
229 230 5.802956 GCCTAGTCTATGTCGCTTTCATATC 59.197 44.000 0.00 0.00 0.00 1.63
230 231 6.326375 CCTAGTCTATGTCGCTTTCATATCC 58.674 44.000 0.00 0.00 0.00 2.59
231 232 5.791336 AGTCTATGTCGCTTTCATATCCA 57.209 39.130 0.00 0.00 0.00 3.41
232 233 6.161855 AGTCTATGTCGCTTTCATATCCAA 57.838 37.500 0.00 0.00 0.00 3.53
233 234 6.582636 AGTCTATGTCGCTTTCATATCCAAA 58.417 36.000 0.00 0.00 0.00 3.28
234 235 6.480320 AGTCTATGTCGCTTTCATATCCAAAC 59.520 38.462 0.00 0.00 0.00 2.93
235 236 4.536364 ATGTCGCTTTCATATCCAAACG 57.464 40.909 0.00 0.00 0.00 3.60
236 237 2.095213 TGTCGCTTTCATATCCAAACGC 59.905 45.455 0.00 0.00 0.00 4.84
237 238 1.326245 TCGCTTTCATATCCAAACGCG 59.674 47.619 3.53 3.53 40.58 6.01
238 239 1.326245 CGCTTTCATATCCAAACGCGA 59.674 47.619 15.93 0.00 41.62 5.87
239 240 2.032894 CGCTTTCATATCCAAACGCGAT 60.033 45.455 15.93 0.00 41.62 4.58
240 241 3.546020 CGCTTTCATATCCAAACGCGATT 60.546 43.478 15.93 3.59 41.62 3.34
241 242 4.351192 GCTTTCATATCCAAACGCGATTT 58.649 39.130 15.93 7.01 0.00 2.17
242 243 4.204978 GCTTTCATATCCAAACGCGATTTG 59.795 41.667 15.93 18.84 46.32 2.32
243 244 3.332761 TCATATCCAAACGCGATTTGC 57.667 42.857 15.93 0.00 45.53 3.68
244 245 2.680339 TCATATCCAAACGCGATTTGCA 59.320 40.909 15.93 6.68 45.53 4.08
245 246 2.535934 TATCCAAACGCGATTTGCAC 57.464 45.000 15.93 0.00 45.53 4.57
246 247 0.109319 ATCCAAACGCGATTTGCACC 60.109 50.000 15.93 0.00 45.53 5.01
247 248 2.080062 CCAAACGCGATTTGCACCG 61.080 57.895 15.93 3.72 45.53 4.94
248 249 1.369930 CAAACGCGATTTGCACCGT 60.370 52.632 15.93 0.00 46.97 4.83
249 250 0.110599 CAAACGCGATTTGCACCGTA 60.111 50.000 15.93 0.00 46.97 4.02
250 251 0.800012 AAACGCGATTTGCACCGTAT 59.200 45.000 15.93 0.00 46.97 3.06
251 252 0.800012 AACGCGATTTGCACCGTATT 59.200 45.000 15.93 0.00 46.97 1.89
252 253 0.800012 ACGCGATTTGCACCGTATTT 59.200 45.000 15.93 0.00 46.97 1.40
253 254 1.179332 CGCGATTTGCACCGTATTTG 58.821 50.000 0.00 0.00 46.97 2.32
254 255 0.913876 GCGATTTGCACCGTATTTGC 59.086 50.000 0.00 0.00 45.45 3.68
258 259 2.558821 TGCACCGTATTTGCACGC 59.441 55.556 0.00 0.00 45.06 5.34
259 260 2.202427 GCACCGTATTTGCACGCC 60.202 61.111 0.00 0.00 40.59 5.68
260 261 2.686816 GCACCGTATTTGCACGCCT 61.687 57.895 0.00 0.00 40.59 5.52
261 262 1.363145 GCACCGTATTTGCACGCCTA 61.363 55.000 0.00 0.00 40.59 3.93
262 263 1.080298 CACCGTATTTGCACGCCTAA 58.920 50.000 0.00 0.00 40.59 2.69
263 264 1.062002 CACCGTATTTGCACGCCTAAG 59.938 52.381 0.00 0.00 40.59 2.18
264 265 0.027586 CCGTATTTGCACGCCTAAGC 59.972 55.000 0.00 0.00 40.59 3.09
265 266 0.027586 CGTATTTGCACGCCTAAGCC 59.972 55.000 0.00 0.00 34.78 4.35
266 267 1.091537 GTATTTGCACGCCTAAGCCA 58.908 50.000 0.00 0.00 34.57 4.75
267 268 1.470890 GTATTTGCACGCCTAAGCCAA 59.529 47.619 0.00 0.00 34.57 4.52
268 269 0.527565 ATTTGCACGCCTAAGCCAAG 59.472 50.000 0.00 0.00 34.57 3.61
269 270 0.821711 TTTGCACGCCTAAGCCAAGT 60.822 50.000 0.00 0.00 34.57 3.16
270 271 0.821711 TTGCACGCCTAAGCCAAGTT 60.822 50.000 0.00 0.00 34.57 2.66
271 272 0.821711 TGCACGCCTAAGCCAAGTTT 60.822 50.000 0.00 0.00 34.57 2.66
272 273 0.313987 GCACGCCTAAGCCAAGTTTT 59.686 50.000 0.00 0.00 34.57 2.43
273 274 1.269569 GCACGCCTAAGCCAAGTTTTT 60.270 47.619 0.00 0.00 34.57 1.94
274 275 2.030628 GCACGCCTAAGCCAAGTTTTTA 60.031 45.455 0.00 0.00 34.57 1.52
275 276 3.561503 CACGCCTAAGCCAAGTTTTTAC 58.438 45.455 0.00 0.00 34.57 2.01
276 277 3.003897 CACGCCTAAGCCAAGTTTTTACA 59.996 43.478 0.00 0.00 34.57 2.41
277 278 3.004002 ACGCCTAAGCCAAGTTTTTACAC 59.996 43.478 0.00 0.00 34.57 2.90
278 279 3.252458 CGCCTAAGCCAAGTTTTTACACT 59.748 43.478 0.00 0.00 34.57 3.55
279 280 4.453136 CGCCTAAGCCAAGTTTTTACACTA 59.547 41.667 0.00 0.00 34.57 2.74
280 281 5.390567 CGCCTAAGCCAAGTTTTTACACTAG 60.391 44.000 0.00 0.00 34.57 2.57
281 282 5.472478 GCCTAAGCCAAGTTTTTACACTAGT 59.528 40.000 0.00 0.00 0.00 2.57
282 283 6.016527 GCCTAAGCCAAGTTTTTACACTAGTT 60.017 38.462 0.00 0.00 0.00 2.24
283 284 7.582352 CCTAAGCCAAGTTTTTACACTAGTTC 58.418 38.462 0.00 0.00 0.00 3.01
284 285 5.668558 AGCCAAGTTTTTACACTAGTTCG 57.331 39.130 0.00 0.00 0.00 3.95
285 286 5.362263 AGCCAAGTTTTTACACTAGTTCGA 58.638 37.500 0.00 0.00 0.00 3.71
286 287 5.995897 AGCCAAGTTTTTACACTAGTTCGAT 59.004 36.000 0.00 0.00 0.00 3.59
287 288 6.073222 AGCCAAGTTTTTACACTAGTTCGATG 60.073 38.462 0.00 0.00 0.00 3.84
288 289 6.293244 GCCAAGTTTTTACACTAGTTCGATGT 60.293 38.462 0.00 0.00 0.00 3.06
289 290 7.095523 GCCAAGTTTTTACACTAGTTCGATGTA 60.096 37.037 0.00 0.00 0.00 2.29
290 291 8.932791 CCAAGTTTTTACACTAGTTCGATGTAT 58.067 33.333 0.00 0.00 0.00 2.29
291 292 9.741168 CAAGTTTTTACACTAGTTCGATGTATG 57.259 33.333 0.00 0.00 0.00 2.39
292 293 7.960793 AGTTTTTACACTAGTTCGATGTATGC 58.039 34.615 0.00 0.00 0.00 3.14
293 294 6.897259 TTTTACACTAGTTCGATGTATGCC 57.103 37.500 0.00 0.00 0.00 4.40
294 295 3.079960 ACACTAGTTCGATGTATGCCG 57.920 47.619 0.00 0.00 0.00 5.69
295 296 1.787155 CACTAGTTCGATGTATGCCGC 59.213 52.381 0.00 0.00 0.00 6.53
296 297 1.407618 ACTAGTTCGATGTATGCCGCA 59.592 47.619 0.00 0.00 0.00 5.69
297 298 2.159156 ACTAGTTCGATGTATGCCGCAA 60.159 45.455 0.00 0.00 0.00 4.85
298 299 1.290203 AGTTCGATGTATGCCGCAAG 58.710 50.000 0.00 0.00 0.00 4.01
299 300 1.006832 GTTCGATGTATGCCGCAAGT 58.993 50.000 0.00 0.00 0.00 3.16
300 301 1.396996 GTTCGATGTATGCCGCAAGTT 59.603 47.619 0.00 0.00 0.00 2.66
301 302 1.286501 TCGATGTATGCCGCAAGTTC 58.713 50.000 0.00 0.00 0.00 3.01
302 303 1.134818 TCGATGTATGCCGCAAGTTCT 60.135 47.619 0.00 0.00 0.00 3.01
303 304 2.100087 TCGATGTATGCCGCAAGTTCTA 59.900 45.455 0.00 0.00 0.00 2.10
304 305 2.472861 CGATGTATGCCGCAAGTTCTAG 59.527 50.000 0.00 0.00 0.00 2.43
305 306 1.651987 TGTATGCCGCAAGTTCTAGC 58.348 50.000 0.00 0.00 0.00 3.42
306 307 1.066502 TGTATGCCGCAAGTTCTAGCA 60.067 47.619 0.00 0.00 37.94 3.49
307 308 1.327764 GTATGCCGCAAGTTCTAGCAC 59.672 52.381 0.00 0.00 36.06 4.40
308 309 1.026718 ATGCCGCAAGTTCTAGCACC 61.027 55.000 0.00 0.00 36.06 5.01
309 310 1.671054 GCCGCAAGTTCTAGCACCA 60.671 57.895 0.00 0.00 0.00 4.17
310 311 1.234615 GCCGCAAGTTCTAGCACCAA 61.235 55.000 0.00 0.00 0.00 3.67
311 312 1.234821 CCGCAAGTTCTAGCACCAAA 58.765 50.000 0.00 0.00 0.00 3.28
312 313 1.197721 CCGCAAGTTCTAGCACCAAAG 59.802 52.381 0.00 0.00 0.00 2.77
313 314 1.873591 CGCAAGTTCTAGCACCAAAGT 59.126 47.619 0.00 0.00 0.00 2.66
315 316 2.030805 GCAAGTTCTAGCACCAAAGTGG 60.031 50.000 0.00 0.00 44.69 4.00
316 317 1.897560 AGTTCTAGCACCAAAGTGGC 58.102 50.000 0.00 0.00 42.67 5.01
317 318 0.881796 GTTCTAGCACCAAAGTGGCC 59.118 55.000 0.00 0.00 42.67 5.36
318 319 0.605319 TTCTAGCACCAAAGTGGCCG 60.605 55.000 0.00 0.00 42.67 6.13
319 320 1.302511 CTAGCACCAAAGTGGCCGT 60.303 57.895 0.00 0.00 42.67 5.68
320 321 0.889186 CTAGCACCAAAGTGGCCGTT 60.889 55.000 0.00 0.00 42.67 4.44
321 322 0.887387 TAGCACCAAAGTGGCCGTTC 60.887 55.000 0.00 0.00 42.67 3.95
322 323 2.485795 GCACCAAAGTGGCCGTTCA 61.486 57.895 0.00 0.00 42.67 3.18
323 324 1.358759 CACCAAAGTGGCCGTTCAC 59.641 57.895 0.00 0.00 42.67 3.18
324 325 2.184167 ACCAAAGTGGCCGTTCACG 61.184 57.895 0.00 0.00 42.67 4.35
325 326 1.890041 CCAAAGTGGCCGTTCACGA 60.890 57.895 0.00 0.00 42.10 4.35
326 327 1.278637 CAAAGTGGCCGTTCACGAC 59.721 57.895 0.00 0.00 42.10 4.34
327 328 1.153329 AAAGTGGCCGTTCACGACA 60.153 52.632 0.00 0.00 42.10 4.35
328 329 0.745128 AAAGTGGCCGTTCACGACAA 60.745 50.000 0.00 0.00 42.10 3.18
329 330 1.157870 AAGTGGCCGTTCACGACAAG 61.158 55.000 0.00 0.00 42.10 3.16
330 331 1.885850 GTGGCCGTTCACGACAAGT 60.886 57.895 0.00 0.00 43.02 3.16
331 332 1.153329 TGGCCGTTCACGACAAGTT 60.153 52.632 0.00 0.00 43.02 2.66
332 333 1.155424 TGGCCGTTCACGACAAGTTC 61.155 55.000 0.00 0.00 43.02 3.01
333 334 0.878961 GGCCGTTCACGACAAGTTCT 60.879 55.000 0.00 0.00 43.02 3.01
334 335 1.603678 GGCCGTTCACGACAAGTTCTA 60.604 52.381 0.00 0.00 43.02 2.10
335 336 1.719780 GCCGTTCACGACAAGTTCTAG 59.280 52.381 0.00 0.00 43.02 2.43
336 337 1.719780 CCGTTCACGACAAGTTCTAGC 59.280 52.381 0.00 0.00 43.02 3.42
337 338 2.390938 CGTTCACGACAAGTTCTAGCA 58.609 47.619 0.00 0.00 43.02 3.49
338 339 2.153247 CGTTCACGACAAGTTCTAGCAC 59.847 50.000 0.00 0.00 43.02 4.40
339 340 2.433868 TCACGACAAGTTCTAGCACC 57.566 50.000 0.00 0.00 0.00 5.01
340 341 1.684450 TCACGACAAGTTCTAGCACCA 59.316 47.619 0.00 0.00 0.00 4.17
341 342 1.792949 CACGACAAGTTCTAGCACCAC 59.207 52.381 0.00 0.00 0.00 4.16
342 343 1.270147 ACGACAAGTTCTAGCACCACC 60.270 52.381 0.00 0.00 0.00 4.61
343 344 1.429463 GACAAGTTCTAGCACCACCG 58.571 55.000 0.00 0.00 0.00 4.94
344 345 0.034896 ACAAGTTCTAGCACCACCGG 59.965 55.000 0.00 0.00 0.00 5.28
345 346 0.034896 CAAGTTCTAGCACCACCGGT 59.965 55.000 0.00 0.00 35.62 5.28
356 357 2.467566 ACCACCGGTGTAATTGACTC 57.532 50.000 31.80 0.00 32.98 3.36
449 450 2.770589 GGTGTGCGCTGGTTTGTGT 61.771 57.895 9.73 0.00 0.00 3.72
560 576 2.093341 TCTTATACGGTTTGTGAGGGGC 60.093 50.000 0.00 0.00 0.00 5.80
572 588 3.718210 GAGGGGCGTACCGAAGCAG 62.718 68.421 0.00 0.00 41.60 4.24
628 644 4.700268 TGATGCCACATTGAACATACAC 57.300 40.909 0.00 0.00 0.00 2.90
656 672 6.785488 TTATACAGAAATAAGCAGCGGATG 57.215 37.500 0.00 0.00 0.00 3.51
715 745 4.218200 ACTCCTGATCTCATCTCATTAGCG 59.782 45.833 0.00 0.00 0.00 4.26
760 790 3.057315 GTCACCTAGTACGTGGTAAGCAA 60.057 47.826 11.51 0.00 34.79 3.91
791 821 7.457060 GCAGGAATCTAAAAGACTAGAAAACG 58.543 38.462 0.00 0.00 31.76 3.60
794 824 9.557061 AGGAATCTAAAAGACTAGAAAACGTTT 57.443 29.630 7.96 7.96 31.76 3.60
888 919 2.027192 TGGTGGCAGGTCTTATTGACTC 60.027 50.000 0.00 0.00 44.74 3.36
889 920 2.633488 GTGGCAGGTCTTATTGACTCC 58.367 52.381 0.00 0.00 44.74 3.85
917 948 4.009370 ACTTGAAGACTTGGAAGGCTAC 57.991 45.455 0.00 0.00 45.79 3.58
918 949 3.648545 ACTTGAAGACTTGGAAGGCTACT 59.351 43.478 0.00 0.00 45.79 2.57
929 960 4.610333 TGGAAGGCTACTAGAAGTCATCA 58.390 43.478 0.00 0.00 0.00 3.07
937 968 6.317391 GGCTACTAGAAGTCATCAGCAATTTT 59.683 38.462 0.00 0.00 29.91 1.82
942 973 6.010294 AGAAGTCATCAGCAATTTTCACAG 57.990 37.500 0.00 0.00 0.00 3.66
945 976 4.219944 AGTCATCAGCAATTTTCACAGCAT 59.780 37.500 0.00 0.00 0.00 3.79
968 999 1.540267 CAATCAGAGCAGCAACAGCTT 59.460 47.619 0.00 0.00 43.58 3.74
970 1001 2.549064 TCAGAGCAGCAACAGCTTTA 57.451 45.000 0.00 0.00 43.58 1.85
974 1005 3.008330 AGAGCAGCAACAGCTTTATCTG 58.992 45.455 0.00 0.00 43.58 2.90
992 1023 2.820787 TCTGTTCCTCTTCTTCTCCGAC 59.179 50.000 0.00 0.00 0.00 4.79
1005 1036 1.272490 TCTCCGACTGTGACCATGAAC 59.728 52.381 0.00 0.00 0.00 3.18
1012 1043 0.320683 TGTGACCATGAACGGAGCTG 60.321 55.000 0.00 0.00 0.00 4.24
1017 1048 1.066573 ACCATGAACGGAGCTGAGAAG 60.067 52.381 0.00 0.00 0.00 2.85
1018 1049 1.066573 CCATGAACGGAGCTGAGAAGT 60.067 52.381 0.00 0.00 0.00 3.01
1061 1092 0.036732 CACTTCCAGCCTGCCAAGTA 59.963 55.000 6.89 0.00 0.00 2.24
1097 1128 2.895062 GCACTTCAAATTTGCGCTTTG 58.105 42.857 13.54 11.69 35.41 2.77
1241 1272 1.139058 AGATCCCAATGGTACGTGCTC 59.861 52.381 3.01 0.00 0.00 4.26
1308 1339 7.538678 GGCAAAATATTGATAATCGGCTAGTTG 59.461 37.037 0.00 0.00 38.94 3.16
1317 1348 2.961526 TCGGCTAGTTGATCTTGGTC 57.038 50.000 0.00 0.00 0.00 4.02
2384 2468 2.731348 GAGATCGCCGGCATCGTC 60.731 66.667 28.98 17.41 33.95 4.20
2557 2641 4.821589 GGCTTCCGGCGACCTGAG 62.822 72.222 9.30 0.00 42.94 3.35
2642 2730 1.269413 ACCGACCTCACAAAGTACGTG 60.269 52.381 0.00 0.00 35.63 4.49
2712 2809 7.874528 AGAAAGAAAAGGCATGTAAATTTCTGG 59.125 33.333 14.34 0.00 39.54 3.86
2858 3017 3.070015 AGTCCATTTGCCTTGGAAAACTG 59.930 43.478 0.00 0.00 44.62 3.16
2868 3027 3.511146 CCTTGGAAAACTGGTACATGCAT 59.489 43.478 0.00 0.00 38.20 3.96
2869 3028 4.704540 CCTTGGAAAACTGGTACATGCATA 59.295 41.667 0.00 0.00 38.20 3.14
2870 3029 5.360714 CCTTGGAAAACTGGTACATGCATAT 59.639 40.000 0.00 0.00 38.20 1.78
2872 3031 4.644234 TGGAAAACTGGTACATGCATATGG 59.356 41.667 0.00 0.00 38.20 2.74
2974 3341 3.365291 GACGGCTCGCATGTACCCA 62.365 63.158 0.00 0.00 0.00 4.51
3067 3434 4.329545 GAGGCGTGGGAGTTGGCA 62.330 66.667 0.00 0.00 0.00 4.92
3110 3477 2.400399 GCGTTATATAGCTCGGTTGCA 58.600 47.619 0.00 0.00 34.99 4.08
3161 3528 8.613613 TTGCGTGATAATTTGTGATGATTTAC 57.386 30.769 0.00 0.00 0.00 2.01
3205 3574 4.104383 ACTGGAAACATGTTGGAGTGAT 57.896 40.909 12.82 0.00 41.51 3.06
3216 3585 8.511604 ACATGTTGGAGTGATTAAGGATTAAG 57.488 34.615 0.00 0.00 44.82 1.85
3217 3586 7.557719 ACATGTTGGAGTGATTAAGGATTAAGG 59.442 37.037 0.00 0.00 44.82 2.69
3269 3638 5.499139 TTTTTCAAGAATATGCCTAGGCG 57.501 39.130 28.28 11.75 45.51 5.52
3270 3639 3.838244 TTCAAGAATATGCCTAGGCGT 57.162 42.857 30.66 30.66 45.51 5.68
3271 3640 4.948341 TTCAAGAATATGCCTAGGCGTA 57.052 40.909 32.72 32.72 45.23 4.42
3272 3641 4.252971 TCAAGAATATGCCTAGGCGTAC 57.747 45.455 33.17 22.73 44.15 3.67
3273 3642 3.006537 TCAAGAATATGCCTAGGCGTACC 59.993 47.826 33.17 26.42 44.15 3.34
3274 3643 2.605257 AGAATATGCCTAGGCGTACCA 58.395 47.619 33.17 17.67 44.15 3.25
3275 3644 3.173965 AGAATATGCCTAGGCGTACCAT 58.826 45.455 33.17 23.11 44.15 3.55
3276 3645 4.350245 AGAATATGCCTAGGCGTACCATA 58.650 43.478 33.17 22.21 44.15 2.74
3277 3646 4.402793 AGAATATGCCTAGGCGTACCATAG 59.597 45.833 33.17 0.00 44.15 2.23
3278 3647 0.608640 ATGCCTAGGCGTACCATAGC 59.391 55.000 27.44 0.00 45.51 2.97
3279 3648 0.469331 TGCCTAGGCGTACCATAGCT 60.469 55.000 28.28 0.00 45.51 3.32
3280 3649 0.680061 GCCTAGGCGTACCATAGCTT 59.320 55.000 20.16 0.00 39.06 3.74
3281 3650 1.070289 GCCTAGGCGTACCATAGCTTT 59.930 52.381 20.16 0.00 39.06 3.51
3282 3651 2.298163 GCCTAGGCGTACCATAGCTTTA 59.702 50.000 20.16 0.00 39.06 1.85
3283 3652 3.056035 GCCTAGGCGTACCATAGCTTTAT 60.056 47.826 20.16 0.00 39.06 1.40
3284 3653 4.159135 GCCTAGGCGTACCATAGCTTTATA 59.841 45.833 20.16 0.00 39.06 0.98
3285 3654 5.679127 GCCTAGGCGTACCATAGCTTTATAG 60.679 48.000 20.16 0.00 39.06 1.31
3286 3655 5.651139 CCTAGGCGTACCATAGCTTTATAGA 59.349 44.000 0.00 0.00 39.06 1.98
3287 3656 6.152323 CCTAGGCGTACCATAGCTTTATAGAA 59.848 42.308 0.00 0.00 39.06 2.10
3288 3657 6.026947 AGGCGTACCATAGCTTTATAGAAG 57.973 41.667 0.00 0.00 39.06 2.85
3289 3658 5.047235 AGGCGTACCATAGCTTTATAGAAGG 60.047 44.000 0.00 0.00 39.06 3.46
3290 3659 4.626172 GCGTACCATAGCTTTATAGAAGGC 59.374 45.833 0.00 0.00 37.92 4.35
3291 3660 5.779922 CGTACCATAGCTTTATAGAAGGCA 58.220 41.667 6.98 0.00 40.04 4.75
3292 3661 5.864474 CGTACCATAGCTTTATAGAAGGCAG 59.136 44.000 6.98 0.00 40.04 4.85
3293 3662 6.294564 CGTACCATAGCTTTATAGAAGGCAGA 60.295 42.308 6.98 0.00 40.04 4.26
3294 3663 6.500589 ACCATAGCTTTATAGAAGGCAGAA 57.499 37.500 6.98 0.00 40.04 3.02
3295 3664 6.900194 ACCATAGCTTTATAGAAGGCAGAAA 58.100 36.000 6.98 0.00 40.04 2.52
3296 3665 7.521669 ACCATAGCTTTATAGAAGGCAGAAAT 58.478 34.615 6.98 0.00 40.04 2.17
3297 3666 8.660435 ACCATAGCTTTATAGAAGGCAGAAATA 58.340 33.333 6.98 0.00 40.04 1.40
3298 3667 8.940952 CCATAGCTTTATAGAAGGCAGAAATAC 58.059 37.037 6.98 0.00 40.04 1.89
3299 3668 8.651588 CATAGCTTTATAGAAGGCAGAAATACG 58.348 37.037 6.98 0.00 40.04 3.06
3300 3669 6.817184 AGCTTTATAGAAGGCAGAAATACGA 58.183 36.000 6.98 0.00 40.04 3.43
3301 3670 7.445945 AGCTTTATAGAAGGCAGAAATACGAT 58.554 34.615 6.98 0.00 40.04 3.73
3302 3671 7.934120 AGCTTTATAGAAGGCAGAAATACGATT 59.066 33.333 6.98 0.00 40.04 3.34
3303 3672 9.204570 GCTTTATAGAAGGCAGAAATACGATTA 57.795 33.333 0.00 0.00 37.59 1.75
3307 3676 6.910536 AGAAGGCAGAAATACGATTACAAG 57.089 37.500 0.00 0.00 0.00 3.16
3308 3677 6.407202 AGAAGGCAGAAATACGATTACAAGT 58.593 36.000 0.00 0.00 0.00 3.16
3309 3678 7.553334 AGAAGGCAGAAATACGATTACAAGTA 58.447 34.615 0.00 0.00 0.00 2.24
3310 3679 8.038944 AGAAGGCAGAAATACGATTACAAGTAA 58.961 33.333 0.00 0.00 0.00 2.24
3311 3680 7.535489 AGGCAGAAATACGATTACAAGTAAC 57.465 36.000 0.00 0.00 0.00 2.50
3312 3681 7.328737 AGGCAGAAATACGATTACAAGTAACT 58.671 34.615 0.00 0.00 0.00 2.24
3313 3682 8.472413 AGGCAGAAATACGATTACAAGTAACTA 58.528 33.333 0.00 0.00 0.00 2.24
3314 3683 8.538039 GGCAGAAATACGATTACAAGTAACTAC 58.462 37.037 0.00 0.00 0.00 2.73
3315 3684 9.079833 GCAGAAATACGATTACAAGTAACTACA 57.920 33.333 0.00 0.00 0.00 2.74
3320 3689 8.832487 ATACGATTACAAGTAACTACAACTCG 57.168 34.615 0.00 7.79 0.00 4.18
3321 3690 5.570589 ACGATTACAAGTAACTACAACTCGC 59.429 40.000 8.79 0.00 0.00 5.03
3322 3691 5.798934 CGATTACAAGTAACTACAACTCGCT 59.201 40.000 0.00 0.00 0.00 4.93
3323 3692 6.237227 CGATTACAAGTAACTACAACTCGCTG 60.237 42.308 0.00 0.00 0.00 5.18
3324 3693 3.057734 ACAAGTAACTACAACTCGCTGC 58.942 45.455 0.00 0.00 0.00 5.25
3325 3694 1.978542 AGTAACTACAACTCGCTGCG 58.021 50.000 17.25 17.25 0.00 5.18
3326 3695 1.538512 AGTAACTACAACTCGCTGCGA 59.461 47.619 24.43 24.43 0.00 5.10
3327 3696 2.030540 AGTAACTACAACTCGCTGCGAA 60.031 45.455 25.86 9.69 34.74 4.70
3328 3697 1.137513 AACTACAACTCGCTGCGAAC 58.862 50.000 25.86 0.00 34.74 3.95
3329 3698 0.031585 ACTACAACTCGCTGCGAACA 59.968 50.000 25.86 3.78 34.74 3.18
3340 3709 2.623173 GCGAACAGCGAGCATAGC 59.377 61.111 0.00 0.00 44.57 2.97
3341 3710 2.167219 GCGAACAGCGAGCATAGCA 61.167 57.895 0.00 0.00 44.57 3.49
3342 3711 1.493950 GCGAACAGCGAGCATAGCAT 61.494 55.000 0.00 0.00 44.57 3.79
3343 3712 0.231534 CGAACAGCGAGCATAGCATG 59.768 55.000 0.00 0.00 44.57 4.06
3344 3713 1.575244 GAACAGCGAGCATAGCATGA 58.425 50.000 0.00 0.00 40.10 3.07
3345 3714 1.935873 GAACAGCGAGCATAGCATGAA 59.064 47.619 0.00 0.00 40.10 2.57
3346 3715 1.293924 ACAGCGAGCATAGCATGAAC 58.706 50.000 0.00 0.00 40.10 3.18
3347 3716 1.292992 CAGCGAGCATAGCATGAACA 58.707 50.000 0.00 0.00 40.10 3.18
3348 3717 1.871676 CAGCGAGCATAGCATGAACAT 59.128 47.619 0.00 0.00 40.10 2.71
3349 3718 2.096367 CAGCGAGCATAGCATGAACATC 60.096 50.000 0.00 0.00 40.10 3.06
3350 3719 1.869132 GCGAGCATAGCATGAACATCA 59.131 47.619 0.00 0.00 36.44 3.07
3351 3720 2.349249 GCGAGCATAGCATGAACATCAC 60.349 50.000 0.00 0.00 36.44 3.06
3352 3721 2.867975 CGAGCATAGCATGAACATCACA 59.132 45.455 0.00 0.00 0.00 3.58
3353 3722 3.310501 CGAGCATAGCATGAACATCACAA 59.689 43.478 0.00 0.00 0.00 3.33
3354 3723 4.595116 GAGCATAGCATGAACATCACAAC 58.405 43.478 0.00 0.00 0.00 3.32
3355 3724 3.379372 AGCATAGCATGAACATCACAACC 59.621 43.478 0.00 0.00 0.00 3.77
3356 3725 3.789791 GCATAGCATGAACATCACAACCG 60.790 47.826 0.00 0.00 0.00 4.44
3357 3726 1.167851 AGCATGAACATCACAACCGG 58.832 50.000 0.00 0.00 0.00 5.28
3358 3727 0.171007 GCATGAACATCACAACCGGG 59.829 55.000 6.32 0.00 0.00 5.73
3359 3728 1.533625 CATGAACATCACAACCGGGT 58.466 50.000 6.32 0.00 0.00 5.28
3360 3729 2.705730 CATGAACATCACAACCGGGTA 58.294 47.619 6.32 0.00 0.00 3.69
3361 3730 2.932855 TGAACATCACAACCGGGTAA 57.067 45.000 6.32 0.00 0.00 2.85
3362 3731 2.773487 TGAACATCACAACCGGGTAAG 58.227 47.619 6.32 0.00 0.00 2.34
3363 3732 2.369203 TGAACATCACAACCGGGTAAGA 59.631 45.455 6.32 0.00 0.00 2.10
3364 3733 2.467566 ACATCACAACCGGGTAAGAC 57.532 50.000 6.32 0.00 0.00 3.01
3365 3734 1.002773 ACATCACAACCGGGTAAGACC 59.997 52.381 6.32 0.00 37.60 3.85
3377 3746 2.953453 GGTAAGACCCAAAAACACCCT 58.047 47.619 0.00 0.00 30.04 4.34
3378 3747 3.302161 GGTAAGACCCAAAAACACCCTT 58.698 45.455 0.00 0.00 30.04 3.95
3379 3748 3.319972 GGTAAGACCCAAAAACACCCTTC 59.680 47.826 0.00 0.00 30.04 3.46
3380 3749 1.687563 AGACCCAAAAACACCCTTCG 58.312 50.000 0.00 0.00 0.00 3.79
3381 3750 1.213430 AGACCCAAAAACACCCTTCGA 59.787 47.619 0.00 0.00 0.00 3.71
3382 3751 1.335810 GACCCAAAAACACCCTTCGAC 59.664 52.381 0.00 0.00 0.00 4.20
3383 3752 0.671796 CCCAAAAACACCCTTCGACC 59.328 55.000 0.00 0.00 0.00 4.79
3384 3753 1.394618 CCAAAAACACCCTTCGACCA 58.605 50.000 0.00 0.00 0.00 4.02
3385 3754 1.066454 CCAAAAACACCCTTCGACCAC 59.934 52.381 0.00 0.00 0.00 4.16
3386 3755 1.746220 CAAAAACACCCTTCGACCACA 59.254 47.619 0.00 0.00 0.00 4.17
3387 3756 1.385528 AAAACACCCTTCGACCACAC 58.614 50.000 0.00 0.00 0.00 3.82
3388 3757 0.253610 AAACACCCTTCGACCACACA 59.746 50.000 0.00 0.00 0.00 3.72
3389 3758 0.463116 AACACCCTTCGACCACACAC 60.463 55.000 0.00 0.00 0.00 3.82
3390 3759 1.335132 ACACCCTTCGACCACACACT 61.335 55.000 0.00 0.00 0.00 3.55
3391 3760 0.677288 CACCCTTCGACCACACACTA 59.323 55.000 0.00 0.00 0.00 2.74
3392 3761 0.677842 ACCCTTCGACCACACACTAC 59.322 55.000 0.00 0.00 0.00 2.73
3393 3762 0.677288 CCCTTCGACCACACACTACA 59.323 55.000 0.00 0.00 0.00 2.74
3394 3763 1.069513 CCCTTCGACCACACACTACAA 59.930 52.381 0.00 0.00 0.00 2.41
3395 3764 2.404215 CCTTCGACCACACACTACAAG 58.596 52.381 0.00 0.00 0.00 3.16
3396 3765 1.792949 CTTCGACCACACACTACAAGC 59.207 52.381 0.00 0.00 0.00 4.01
3397 3766 0.747852 TCGACCACACACTACAAGCA 59.252 50.000 0.00 0.00 0.00 3.91
3398 3767 1.137282 TCGACCACACACTACAAGCAA 59.863 47.619 0.00 0.00 0.00 3.91
3399 3768 1.260561 CGACCACACACTACAAGCAAC 59.739 52.381 0.00 0.00 0.00 4.17
3400 3769 1.602377 GACCACACACTACAAGCAACC 59.398 52.381 0.00 0.00 0.00 3.77
3401 3770 0.951558 CCACACACTACAAGCAACCC 59.048 55.000 0.00 0.00 0.00 4.11
3402 3771 0.586319 CACACACTACAAGCAACCCG 59.414 55.000 0.00 0.00 0.00 5.28
3449 3818 1.193874 CGCAACAGTTTTCGAGGGTAC 59.806 52.381 0.00 0.00 0.00 3.34
3560 3929 6.115446 CACCTGGAAGACTTAATATCTGCAA 58.885 40.000 0.00 0.00 34.07 4.08
3613 3982 0.601057 ACGGTAATGGTGGCAAAAGC 59.399 50.000 0.00 0.00 0.00 3.51
3690 4063 7.609056 AGCAAAGATCAATATGTGAAAAGCTT 58.391 30.769 0.00 0.00 40.50 3.74
3734 4107 5.937540 TGGATAATTATGTCGGATGCGATTT 59.062 36.000 13.85 6.04 0.00 2.17
3762 4135 7.882791 TCATGCAATAGTTATAACATAGGGTGG 59.117 37.037 17.65 2.35 0.00 4.61
3773 4146 2.910319 ACATAGGGTGGCACAGAACTAA 59.090 45.455 20.82 0.00 41.80 2.24
3798 4171 8.668510 ACTCCAGTTCATCAATGTAATGTATC 57.331 34.615 0.00 0.00 0.00 2.24
3832 4205 7.120138 TCCGAATATAGTCATACGTGCTTATGA 59.880 37.037 0.00 0.00 36.34 2.15
3859 4232 6.152932 AGAACTTGCATGACATCTTTTGTT 57.847 33.333 6.60 0.00 39.18 2.83
3863 4236 7.458409 ACTTGCATGACATCTTTTGTTCTAT 57.542 32.000 6.60 0.00 39.18 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.170607 ACTGGGAATCGAACCATGTAGG 59.829 50.000 12.78 2.71 45.67 3.18
8 9 3.543680 ACTGGGAATCGAACCATGTAG 57.456 47.619 12.78 8.12 35.93 2.74
9 10 3.992943 AACTGGGAATCGAACCATGTA 57.007 42.857 12.78 0.00 35.93 2.29
10 11 2.879103 AACTGGGAATCGAACCATGT 57.121 45.000 12.78 8.23 35.93 3.21
11 12 5.835113 ATAAAACTGGGAATCGAACCATG 57.165 39.130 12.78 7.73 35.93 3.66
12 13 8.533569 AATAATAAAACTGGGAATCGAACCAT 57.466 30.769 12.78 0.31 35.93 3.55
13 14 7.948034 AATAATAAAACTGGGAATCGAACCA 57.052 32.000 12.78 9.80 35.05 3.67
14 15 9.647797 AAAAATAATAAAACTGGGAATCGAACC 57.352 29.630 0.00 0.00 0.00 3.62
54 55 0.104855 GGCTCCATATGTCAGCGACA 59.895 55.000 14.60 12.53 46.90 4.35
55 56 0.601311 GGGCTCCATATGTCAGCGAC 60.601 60.000 14.60 8.70 33.66 5.19
56 57 1.048160 TGGGCTCCATATGTCAGCGA 61.048 55.000 14.60 4.71 33.66 4.93
57 58 0.035881 ATGGGCTCCATATGTCAGCG 59.964 55.000 14.60 0.00 43.19 5.18
82 83 2.118683 CTGACACGTGCCAAAATGTTG 58.881 47.619 17.22 0.00 34.25 3.33
83 84 1.066908 CCTGACACGTGCCAAAATGTT 59.933 47.619 17.22 0.00 0.00 2.71
84 85 0.667993 CCTGACACGTGCCAAAATGT 59.332 50.000 17.22 0.00 0.00 2.71
85 86 0.950836 TCCTGACACGTGCCAAAATG 59.049 50.000 17.22 0.00 0.00 2.32
86 87 1.238439 CTCCTGACACGTGCCAAAAT 58.762 50.000 17.22 0.00 0.00 1.82
87 88 1.444119 GCTCCTGACACGTGCCAAAA 61.444 55.000 17.22 0.20 0.00 2.44
88 89 1.891919 GCTCCTGACACGTGCCAAA 60.892 57.895 17.22 0.60 0.00 3.28
89 90 1.468506 TAGCTCCTGACACGTGCCAA 61.469 55.000 17.22 0.00 0.00 4.52
90 91 1.257750 ATAGCTCCTGACACGTGCCA 61.258 55.000 17.22 10.53 0.00 4.92
91 92 0.108138 AATAGCTCCTGACACGTGCC 60.108 55.000 17.22 4.78 0.00 5.01
92 93 1.661112 GAAATAGCTCCTGACACGTGC 59.339 52.381 17.22 9.30 0.00 5.34
93 94 1.920574 CGAAATAGCTCCTGACACGTG 59.079 52.381 15.48 15.48 0.00 4.49
94 95 1.544691 ACGAAATAGCTCCTGACACGT 59.455 47.619 0.00 0.00 0.00 4.49
95 96 1.920574 CACGAAATAGCTCCTGACACG 59.079 52.381 0.00 0.00 0.00 4.49
96 97 3.182967 CTCACGAAATAGCTCCTGACAC 58.817 50.000 0.00 0.00 0.00 3.67
97 98 2.166459 CCTCACGAAATAGCTCCTGACA 59.834 50.000 0.00 0.00 0.00 3.58
98 99 2.427453 TCCTCACGAAATAGCTCCTGAC 59.573 50.000 0.00 0.00 0.00 3.51
99 100 2.427453 GTCCTCACGAAATAGCTCCTGA 59.573 50.000 0.00 0.00 0.00 3.86
100 101 2.166459 TGTCCTCACGAAATAGCTCCTG 59.834 50.000 0.00 0.00 0.00 3.86
101 102 2.457598 TGTCCTCACGAAATAGCTCCT 58.542 47.619 0.00 0.00 0.00 3.69
102 103 2.961526 TGTCCTCACGAAATAGCTCC 57.038 50.000 0.00 0.00 0.00 4.70
103 104 5.607119 TTTTTGTCCTCACGAAATAGCTC 57.393 39.130 0.00 0.00 36.05 4.09
123 124 9.863845 TTTTACCAGAAAGAAACTCGAATTTTT 57.136 25.926 0.00 0.00 0.00 1.94
128 129 9.111613 TGTTATTTTACCAGAAAGAAACTCGAA 57.888 29.630 0.00 0.00 0.00 3.71
129 130 8.665643 TGTTATTTTACCAGAAAGAAACTCGA 57.334 30.769 0.00 0.00 0.00 4.04
130 131 9.329913 CATGTTATTTTACCAGAAAGAAACTCG 57.670 33.333 0.00 0.00 0.00 4.18
131 132 9.129209 GCATGTTATTTTACCAGAAAGAAACTC 57.871 33.333 0.00 0.00 0.00 3.01
132 133 8.088365 GGCATGTTATTTTACCAGAAAGAAACT 58.912 33.333 0.00 0.00 0.00 2.66
133 134 7.870445 TGGCATGTTATTTTACCAGAAAGAAAC 59.130 33.333 0.00 0.00 0.00 2.78
134 135 7.870445 GTGGCATGTTATTTTACCAGAAAGAAA 59.130 33.333 0.00 0.00 0.00 2.52
135 136 7.014711 TGTGGCATGTTATTTTACCAGAAAGAA 59.985 33.333 0.00 0.00 0.00 2.52
136 137 6.491745 TGTGGCATGTTATTTTACCAGAAAGA 59.508 34.615 0.00 0.00 0.00 2.52
137 138 6.586082 GTGTGGCATGTTATTTTACCAGAAAG 59.414 38.462 0.00 0.00 0.00 2.62
138 139 6.451393 GTGTGGCATGTTATTTTACCAGAAA 58.549 36.000 0.00 0.00 0.00 2.52
139 140 5.335269 CGTGTGGCATGTTATTTTACCAGAA 60.335 40.000 0.00 0.00 0.00 3.02
140 141 4.155099 CGTGTGGCATGTTATTTTACCAGA 59.845 41.667 0.00 0.00 0.00 3.86
141 142 4.083003 ACGTGTGGCATGTTATTTTACCAG 60.083 41.667 0.00 0.00 28.11 4.00
142 143 3.821600 ACGTGTGGCATGTTATTTTACCA 59.178 39.130 0.00 0.00 28.11 3.25
143 144 4.083217 TGACGTGTGGCATGTTATTTTACC 60.083 41.667 0.00 0.00 33.38 2.85
144 145 5.037015 TGACGTGTGGCATGTTATTTTAC 57.963 39.130 0.00 0.00 33.38 2.01
145 146 5.645929 AGATGACGTGTGGCATGTTATTTTA 59.354 36.000 0.00 0.00 33.38 1.52
146 147 4.458989 AGATGACGTGTGGCATGTTATTTT 59.541 37.500 0.00 0.00 33.38 1.82
147 148 4.009675 AGATGACGTGTGGCATGTTATTT 58.990 39.130 0.00 0.00 33.38 1.40
148 149 3.374988 CAGATGACGTGTGGCATGTTATT 59.625 43.478 0.00 0.00 33.38 1.40
149 150 2.938451 CAGATGACGTGTGGCATGTTAT 59.062 45.455 0.00 0.00 33.38 1.89
150 151 2.345876 CAGATGACGTGTGGCATGTTA 58.654 47.619 0.00 0.00 33.38 2.41
151 152 1.159285 CAGATGACGTGTGGCATGTT 58.841 50.000 0.00 0.00 33.38 2.71
152 153 0.674581 CCAGATGACGTGTGGCATGT 60.675 55.000 0.00 0.00 34.05 3.21
153 154 0.674581 ACCAGATGACGTGTGGCATG 60.675 55.000 10.71 0.00 45.00 4.06
154 155 0.674581 CACCAGATGACGTGTGGCAT 60.675 55.000 10.71 0.00 45.00 4.40
155 156 1.301637 CACCAGATGACGTGTGGCA 60.302 57.895 10.71 0.00 45.00 4.92
156 157 2.034879 CCACCAGATGACGTGTGGC 61.035 63.158 10.71 0.00 45.00 5.01
157 158 4.284123 CCACCAGATGACGTGTGG 57.716 61.111 9.27 9.27 46.50 4.17
158 159 0.246360 TAGCCACCAGATGACGTGTG 59.754 55.000 0.00 0.00 0.00 3.82
159 160 0.973632 TTAGCCACCAGATGACGTGT 59.026 50.000 0.00 0.00 0.00 4.49
160 161 1.337728 TGTTAGCCACCAGATGACGTG 60.338 52.381 0.00 0.00 0.00 4.49
161 162 0.973632 TGTTAGCCACCAGATGACGT 59.026 50.000 0.00 0.00 0.00 4.34
162 163 1.645034 CTGTTAGCCACCAGATGACG 58.355 55.000 0.00 0.00 0.00 4.35
163 164 1.373570 GCTGTTAGCCACCAGATGAC 58.626 55.000 0.00 0.00 34.48 3.06
164 165 0.108186 CGCTGTTAGCCACCAGATGA 60.108 55.000 0.00 0.00 38.18 2.92
165 166 1.091771 CCGCTGTTAGCCACCAGATG 61.092 60.000 0.00 0.00 38.18 2.90
166 167 1.221840 CCGCTGTTAGCCACCAGAT 59.778 57.895 0.00 0.00 38.18 2.90
167 168 1.476845 TTCCGCTGTTAGCCACCAGA 61.477 55.000 0.00 0.00 38.18 3.86
168 169 1.003839 TTCCGCTGTTAGCCACCAG 60.004 57.895 0.00 0.00 38.18 4.00
169 170 1.302192 GTTCCGCTGTTAGCCACCA 60.302 57.895 0.00 0.00 38.18 4.17
170 171 2.038837 GGTTCCGCTGTTAGCCACC 61.039 63.158 0.00 0.00 38.18 4.61
171 172 1.003718 AGGTTCCGCTGTTAGCCAC 60.004 57.895 0.00 0.00 38.18 5.01
172 173 1.003839 CAGGTTCCGCTGTTAGCCA 60.004 57.895 0.00 0.00 38.18 4.75
173 174 2.399356 GCAGGTTCCGCTGTTAGCC 61.399 63.158 0.00 0.00 38.18 3.93
174 175 1.671054 TGCAGGTTCCGCTGTTAGC 60.671 57.895 0.00 0.00 38.02 3.09
175 176 1.298859 GGTGCAGGTTCCGCTGTTAG 61.299 60.000 0.00 0.00 0.00 2.34
176 177 1.302192 GGTGCAGGTTCCGCTGTTA 60.302 57.895 0.00 0.00 0.00 2.41
177 178 2.594592 GGTGCAGGTTCCGCTGTT 60.595 61.111 0.00 0.00 0.00 3.16
178 179 3.196207 ATGGTGCAGGTTCCGCTGT 62.196 57.895 0.00 0.00 0.00 4.40
179 180 2.360350 ATGGTGCAGGTTCCGCTG 60.360 61.111 0.00 0.00 0.00 5.18
180 181 2.360350 CATGGTGCAGGTTCCGCT 60.360 61.111 0.00 0.00 0.00 5.52
181 182 4.120331 GCATGGTGCAGGTTCCGC 62.120 66.667 0.00 0.00 44.26 5.54
190 191 0.677731 TAGGCTCACTTGCATGGTGC 60.678 55.000 13.39 9.37 45.29 5.01
191 192 1.339438 ACTAGGCTCACTTGCATGGTG 60.339 52.381 12.37 12.37 37.09 4.17
192 193 0.987294 ACTAGGCTCACTTGCATGGT 59.013 50.000 4.44 0.00 33.87 3.55
193 194 1.209019 AGACTAGGCTCACTTGCATGG 59.791 52.381 0.00 0.00 34.04 3.66
194 195 2.687700 AGACTAGGCTCACTTGCATG 57.312 50.000 0.00 0.00 34.04 4.06
195 196 3.708631 ACATAGACTAGGCTCACTTGCAT 59.291 43.478 0.00 0.00 34.04 3.96
196 197 3.099905 ACATAGACTAGGCTCACTTGCA 58.900 45.455 0.00 0.00 34.04 4.08
197 198 3.712187 GACATAGACTAGGCTCACTTGC 58.288 50.000 0.00 0.00 0.00 4.01
198 199 3.793801 GCGACATAGACTAGGCTCACTTG 60.794 52.174 0.00 0.00 0.00 3.16
199 200 2.359531 GCGACATAGACTAGGCTCACTT 59.640 50.000 0.00 0.00 0.00 3.16
200 201 1.950909 GCGACATAGACTAGGCTCACT 59.049 52.381 0.00 0.00 0.00 3.41
201 202 1.950909 AGCGACATAGACTAGGCTCAC 59.049 52.381 0.00 0.00 0.00 3.51
202 203 2.350057 AGCGACATAGACTAGGCTCA 57.650 50.000 0.00 0.00 0.00 4.26
203 204 3.066900 TGAAAGCGACATAGACTAGGCTC 59.933 47.826 0.00 0.00 0.00 4.70
204 205 3.024547 TGAAAGCGACATAGACTAGGCT 58.975 45.455 2.16 2.16 0.00 4.58
205 206 3.438297 TGAAAGCGACATAGACTAGGC 57.562 47.619 0.00 0.00 0.00 3.93
206 207 6.071896 TGGATATGAAAGCGACATAGACTAGG 60.072 42.308 0.00 0.00 34.43 3.02
207 208 6.914259 TGGATATGAAAGCGACATAGACTAG 58.086 40.000 0.00 0.00 34.43 2.57
208 209 6.894339 TGGATATGAAAGCGACATAGACTA 57.106 37.500 0.00 0.00 34.43 2.59
209 210 5.791336 TGGATATGAAAGCGACATAGACT 57.209 39.130 0.00 0.00 34.43 3.24
210 211 6.562270 CGTTTGGATATGAAAGCGACATAGAC 60.562 42.308 0.00 0.00 34.43 2.59
211 212 5.462068 CGTTTGGATATGAAAGCGACATAGA 59.538 40.000 0.00 0.00 34.43 1.98
212 213 5.670097 CGTTTGGATATGAAAGCGACATAG 58.330 41.667 0.00 0.00 34.43 2.23
213 214 4.025229 GCGTTTGGATATGAAAGCGACATA 60.025 41.667 7.21 0.00 35.23 2.29
214 215 3.242739 GCGTTTGGATATGAAAGCGACAT 60.243 43.478 7.21 0.00 0.00 3.06
215 216 2.095213 GCGTTTGGATATGAAAGCGACA 59.905 45.455 7.21 0.00 0.00 4.35
216 217 2.705154 GCGTTTGGATATGAAAGCGAC 58.295 47.619 7.21 0.00 0.00 5.19
218 219 1.730176 CGCGTTTGGATATGAAAGCG 58.270 50.000 0.00 8.25 44.36 4.68
219 220 3.609103 ATCGCGTTTGGATATGAAAGC 57.391 42.857 5.77 0.00 0.00 3.51
220 221 4.204978 GCAAATCGCGTTTGGATATGAAAG 59.795 41.667 24.89 6.45 45.84 2.62
221 222 4.101942 GCAAATCGCGTTTGGATATGAAA 58.898 39.130 24.89 0.00 45.84 2.69
222 223 3.127721 TGCAAATCGCGTTTGGATATGAA 59.872 39.130 24.89 5.91 45.84 2.57
223 224 2.680339 TGCAAATCGCGTTTGGATATGA 59.320 40.909 24.89 0.00 45.84 2.15
224 225 3.063670 TGCAAATCGCGTTTGGATATG 57.936 42.857 24.89 12.77 45.84 1.78
228 229 1.284408 GGTGCAAATCGCGTTTGGA 59.716 52.632 24.89 21.96 45.84 3.53
229 230 2.080062 CGGTGCAAATCGCGTTTGG 61.080 57.895 24.89 15.50 45.84 3.28
231 232 0.800012 ATACGGTGCAAATCGCGTTT 59.200 45.000 5.77 0.00 46.97 3.60
232 233 0.800012 AATACGGTGCAAATCGCGTT 59.200 45.000 5.77 0.00 46.97 4.84
233 234 0.800012 AAATACGGTGCAAATCGCGT 59.200 45.000 5.77 0.00 46.97 6.01
234 235 1.179332 CAAATACGGTGCAAATCGCG 58.821 50.000 0.00 0.00 46.97 5.87
235 236 0.913876 GCAAATACGGTGCAAATCGC 59.086 50.000 0.00 0.00 41.80 4.58
242 243 1.363145 TAGGCGTGCAAATACGGTGC 61.363 55.000 0.00 0.00 43.87 5.01
243 244 1.062002 CTTAGGCGTGCAAATACGGTG 59.938 52.381 0.00 0.00 43.87 4.94
244 245 1.365699 CTTAGGCGTGCAAATACGGT 58.634 50.000 0.00 0.00 43.87 4.83
245 246 0.027586 GCTTAGGCGTGCAAATACGG 59.972 55.000 0.00 0.00 43.87 4.02
246 247 0.027586 GGCTTAGGCGTGCAAATACG 59.972 55.000 0.00 0.00 46.28 3.06
247 248 1.091537 TGGCTTAGGCGTGCAAATAC 58.908 50.000 0.40 0.00 39.81 1.89
248 249 1.742831 CTTGGCTTAGGCGTGCAAATA 59.257 47.619 0.40 0.00 39.81 1.40
249 250 0.527565 CTTGGCTTAGGCGTGCAAAT 59.472 50.000 0.40 0.00 39.81 2.32
250 251 0.821711 ACTTGGCTTAGGCGTGCAAA 60.822 50.000 0.40 0.00 39.81 3.68
251 252 0.821711 AACTTGGCTTAGGCGTGCAA 60.822 50.000 0.40 0.00 39.81 4.08
252 253 0.821711 AAACTTGGCTTAGGCGTGCA 60.822 50.000 0.40 0.00 39.81 4.57
253 254 0.313987 AAAACTTGGCTTAGGCGTGC 59.686 50.000 0.40 0.00 39.81 5.34
254 255 2.793278 AAAAACTTGGCTTAGGCGTG 57.207 45.000 0.40 0.00 39.81 5.34
255 256 3.004002 GTGTAAAAACTTGGCTTAGGCGT 59.996 43.478 0.40 0.00 39.81 5.68
256 257 3.252458 AGTGTAAAAACTTGGCTTAGGCG 59.748 43.478 0.40 0.00 39.81 5.52
257 258 4.848562 AGTGTAAAAACTTGGCTTAGGC 57.151 40.909 0.00 0.00 37.82 3.93
258 259 7.506328 AACTAGTGTAAAAACTTGGCTTAGG 57.494 36.000 0.00 0.00 0.00 2.69
259 260 7.170320 TCGAACTAGTGTAAAAACTTGGCTTAG 59.830 37.037 0.00 0.00 0.00 2.18
260 261 6.985645 TCGAACTAGTGTAAAAACTTGGCTTA 59.014 34.615 0.00 0.00 0.00 3.09
261 262 5.818857 TCGAACTAGTGTAAAAACTTGGCTT 59.181 36.000 0.00 0.00 0.00 4.35
262 263 5.362263 TCGAACTAGTGTAAAAACTTGGCT 58.638 37.500 0.00 0.00 0.00 4.75
263 264 5.662211 TCGAACTAGTGTAAAAACTTGGC 57.338 39.130 0.00 0.00 0.00 4.52
264 265 7.186021 ACATCGAACTAGTGTAAAAACTTGG 57.814 36.000 0.00 0.00 0.00 3.61
265 266 9.741168 CATACATCGAACTAGTGTAAAAACTTG 57.259 33.333 0.00 0.00 32.65 3.16
266 267 8.440833 GCATACATCGAACTAGTGTAAAAACTT 58.559 33.333 0.00 0.00 32.65 2.66
267 268 7.064253 GGCATACATCGAACTAGTGTAAAAACT 59.936 37.037 0.00 0.00 32.65 2.66
268 269 7.178074 GGCATACATCGAACTAGTGTAAAAAC 58.822 38.462 0.00 0.00 32.65 2.43
269 270 6.035220 CGGCATACATCGAACTAGTGTAAAAA 59.965 38.462 0.00 0.00 32.65 1.94
270 271 5.517411 CGGCATACATCGAACTAGTGTAAAA 59.483 40.000 0.00 0.00 32.65 1.52
271 272 5.038683 CGGCATACATCGAACTAGTGTAAA 58.961 41.667 0.00 0.00 32.65 2.01
272 273 4.603985 CGGCATACATCGAACTAGTGTAA 58.396 43.478 0.00 0.00 32.65 2.41
273 274 3.549423 GCGGCATACATCGAACTAGTGTA 60.549 47.826 0.00 0.00 33.35 2.90
274 275 2.798499 GCGGCATACATCGAACTAGTGT 60.798 50.000 0.00 0.00 0.00 3.55
275 276 1.787155 GCGGCATACATCGAACTAGTG 59.213 52.381 0.00 0.00 0.00 2.74
276 277 1.407618 TGCGGCATACATCGAACTAGT 59.592 47.619 0.00 0.00 0.00 2.57
277 278 2.134201 TGCGGCATACATCGAACTAG 57.866 50.000 0.00 0.00 0.00 2.57
278 279 2.159156 ACTTGCGGCATACATCGAACTA 60.159 45.455 2.28 0.00 0.00 2.24
279 280 1.290203 CTTGCGGCATACATCGAACT 58.710 50.000 2.28 0.00 0.00 3.01
280 281 1.006832 ACTTGCGGCATACATCGAAC 58.993 50.000 2.28 0.00 0.00 3.95
281 282 1.663643 GAACTTGCGGCATACATCGAA 59.336 47.619 2.28 0.00 0.00 3.71
282 283 1.134818 AGAACTTGCGGCATACATCGA 60.135 47.619 2.28 0.00 0.00 3.59
283 284 1.290203 AGAACTTGCGGCATACATCG 58.710 50.000 2.28 0.00 0.00 3.84
284 285 2.221981 GCTAGAACTTGCGGCATACATC 59.778 50.000 2.28 0.41 0.00 3.06
285 286 2.213499 GCTAGAACTTGCGGCATACAT 58.787 47.619 2.28 0.00 0.00 2.29
286 287 1.066502 TGCTAGAACTTGCGGCATACA 60.067 47.619 2.28 0.00 34.11 2.29
287 288 1.327764 GTGCTAGAACTTGCGGCATAC 59.672 52.381 2.28 0.00 35.37 2.39
288 289 1.651987 GTGCTAGAACTTGCGGCATA 58.348 50.000 2.28 0.00 35.37 3.14
289 290 1.026718 GGTGCTAGAACTTGCGGCAT 61.027 55.000 2.28 0.00 35.37 4.40
290 291 1.671054 GGTGCTAGAACTTGCGGCA 60.671 57.895 0.00 0.00 34.11 5.69
291 292 1.234615 TTGGTGCTAGAACTTGCGGC 61.235 55.000 0.00 0.00 34.11 6.53
292 293 1.197721 CTTTGGTGCTAGAACTTGCGG 59.802 52.381 0.00 0.00 34.11 5.69
293 294 1.873591 ACTTTGGTGCTAGAACTTGCG 59.126 47.619 0.00 0.00 34.11 4.85
294 295 2.030805 CCACTTTGGTGCTAGAACTTGC 60.031 50.000 0.00 1.72 41.75 4.01
295 296 2.030805 GCCACTTTGGTGCTAGAACTTG 60.031 50.000 0.00 0.00 40.46 3.16
296 297 2.230660 GCCACTTTGGTGCTAGAACTT 58.769 47.619 0.00 0.00 40.46 2.66
297 298 1.545651 GGCCACTTTGGTGCTAGAACT 60.546 52.381 0.00 0.00 40.46 3.01
298 299 0.881796 GGCCACTTTGGTGCTAGAAC 59.118 55.000 0.00 0.00 40.46 3.01
299 300 0.605319 CGGCCACTTTGGTGCTAGAA 60.605 55.000 2.24 0.00 40.46 2.10
300 301 1.003839 CGGCCACTTTGGTGCTAGA 60.004 57.895 2.24 0.00 40.46 2.43
301 302 0.889186 AACGGCCACTTTGGTGCTAG 60.889 55.000 2.24 0.00 40.46 3.42
302 303 0.887387 GAACGGCCACTTTGGTGCTA 60.887 55.000 2.24 0.00 40.46 3.49
303 304 2.123897 AACGGCCACTTTGGTGCT 60.124 55.556 2.24 0.00 40.46 4.40
304 305 2.335011 GAACGGCCACTTTGGTGC 59.665 61.111 2.24 0.00 40.46 5.01
305 306 1.358759 GTGAACGGCCACTTTGGTG 59.641 57.895 2.24 0.00 40.46 4.17
306 307 2.184167 CGTGAACGGCCACTTTGGT 61.184 57.895 2.24 0.00 40.46 3.67
307 308 1.890041 TCGTGAACGGCCACTTTGG 60.890 57.895 2.24 0.00 40.29 3.28
308 309 1.278637 GTCGTGAACGGCCACTTTG 59.721 57.895 2.24 0.00 38.15 2.77
309 310 0.745128 TTGTCGTGAACGGCCACTTT 60.745 50.000 2.24 0.00 44.42 2.66
310 311 1.153329 TTGTCGTGAACGGCCACTT 60.153 52.632 2.24 0.00 44.42 3.16
311 312 1.594293 CTTGTCGTGAACGGCCACT 60.594 57.895 2.24 0.00 44.42 4.00
312 313 1.433837 AACTTGTCGTGAACGGCCAC 61.434 55.000 2.24 0.00 44.42 5.01
313 314 1.153329 AACTTGTCGTGAACGGCCA 60.153 52.632 2.24 0.00 44.42 5.36
314 315 0.878961 AGAACTTGTCGTGAACGGCC 60.879 55.000 4.83 0.00 44.42 6.13
315 316 1.719780 CTAGAACTTGTCGTGAACGGC 59.280 52.381 0.00 0.00 45.40 5.68
316 317 1.719780 GCTAGAACTTGTCGTGAACGG 59.280 52.381 2.59 0.00 40.29 4.44
317 318 2.153247 GTGCTAGAACTTGTCGTGAACG 59.847 50.000 0.00 0.00 41.45 3.95
318 319 2.475487 GGTGCTAGAACTTGTCGTGAAC 59.525 50.000 0.00 0.00 0.00 3.18
319 320 2.101750 TGGTGCTAGAACTTGTCGTGAA 59.898 45.455 0.00 0.00 0.00 3.18
320 321 1.684450 TGGTGCTAGAACTTGTCGTGA 59.316 47.619 0.00 0.00 0.00 4.35
321 322 1.792949 GTGGTGCTAGAACTTGTCGTG 59.207 52.381 0.00 0.00 0.00 4.35
322 323 1.270147 GGTGGTGCTAGAACTTGTCGT 60.270 52.381 0.00 0.00 0.00 4.34
323 324 1.429463 GGTGGTGCTAGAACTTGTCG 58.571 55.000 0.00 0.00 0.00 4.35
324 325 1.429463 CGGTGGTGCTAGAACTTGTC 58.571 55.000 0.00 0.00 0.00 3.18
325 326 0.034896 CCGGTGGTGCTAGAACTTGT 59.965 55.000 0.00 0.00 0.00 3.16
326 327 0.034896 ACCGGTGGTGCTAGAACTTG 59.965 55.000 6.12 0.00 32.98 3.16
327 328 2.448749 ACCGGTGGTGCTAGAACTT 58.551 52.632 6.12 0.00 32.98 2.66
328 329 4.210158 ACCGGTGGTGCTAGAACT 57.790 55.556 6.12 0.00 32.98 3.01
337 338 1.975680 AGAGTCAATTACACCGGTGGT 59.024 47.619 36.47 23.92 35.62 4.16
338 339 2.762535 AGAGTCAATTACACCGGTGG 57.237 50.000 36.47 19.50 34.19 4.61
339 340 3.659786 TGAAGAGTCAATTACACCGGTG 58.340 45.455 32.83 32.83 0.00 4.94
340 341 4.345859 TTGAAGAGTCAATTACACCGGT 57.654 40.909 0.00 0.00 38.88 5.28
341 342 5.880054 ATTTGAAGAGTCAATTACACCGG 57.120 39.130 0.00 0.00 43.29 5.28
342 343 9.916397 GTATTATTTGAAGAGTCAATTACACCG 57.084 33.333 0.00 0.00 43.29 4.94
349 350 8.844244 GCATGAGGTATTATTTGAAGAGTCAAT 58.156 33.333 0.00 0.00 43.29 2.57
350 351 7.011389 CGCATGAGGTATTATTTGAAGAGTCAA 59.989 37.037 0.00 0.00 42.12 3.18
351 352 6.479990 CGCATGAGGTATTATTTGAAGAGTCA 59.520 38.462 0.00 0.00 0.00 3.41
352 353 6.564873 GCGCATGAGGTATTATTTGAAGAGTC 60.565 42.308 0.30 0.00 0.00 3.36
353 354 5.237344 GCGCATGAGGTATTATTTGAAGAGT 59.763 40.000 0.30 0.00 0.00 3.24
354 355 5.334414 GGCGCATGAGGTATTATTTGAAGAG 60.334 44.000 10.83 0.00 0.00 2.85
355 356 4.515191 GGCGCATGAGGTATTATTTGAAGA 59.485 41.667 10.83 0.00 0.00 2.87
356 357 4.516698 AGGCGCATGAGGTATTATTTGAAG 59.483 41.667 10.83 0.00 0.00 3.02
440 441 1.821759 CAGCCCGTCACACAAACCA 60.822 57.895 0.00 0.00 0.00 3.67
572 588 4.949856 TCATTGGAATACAAAGAAGAGCCC 59.050 41.667 0.00 0.00 43.46 5.19
651 667 2.332063 ATAGAACAACCCAGCATCCG 57.668 50.000 0.00 0.00 0.00 4.18
656 672 7.443259 TTGTTTACTAATAGAACAACCCAGC 57.557 36.000 3.94 0.00 38.09 4.85
715 745 1.349357 GGATGAGGACTAATGAGCCCC 59.651 57.143 0.00 0.00 0.00 5.80
760 790 3.935828 GTCTTTTAGATTCCTGCGAGCTT 59.064 43.478 0.00 0.00 0.00 3.74
794 824 7.817962 GCAGTAGATGTCAGGTAAGACTTTAAA 59.182 37.037 0.00 0.00 39.27 1.52
888 919 6.294731 CCTTCCAAGTCTTCAAGTTTAATGGG 60.295 42.308 0.00 0.00 0.00 4.00
889 920 6.681777 CCTTCCAAGTCTTCAAGTTTAATGG 58.318 40.000 0.00 0.00 0.00 3.16
917 948 7.137490 TGTGAAAATTGCTGATGACTTCTAG 57.863 36.000 0.00 0.00 0.00 2.43
918 949 6.348786 GCTGTGAAAATTGCTGATGACTTCTA 60.349 38.462 0.00 0.00 0.00 2.10
929 960 2.250031 TGGGATGCTGTGAAAATTGCT 58.750 42.857 0.00 0.00 0.00 3.91
937 968 1.407851 GCTCTGATTGGGATGCTGTGA 60.408 52.381 0.00 0.00 0.00 3.58
942 973 0.750546 TGCTGCTCTGATTGGGATGC 60.751 55.000 0.00 0.00 0.00 3.91
945 976 0.401356 TGTTGCTGCTCTGATTGGGA 59.599 50.000 0.00 0.00 0.00 4.37
968 999 5.125739 GTCGGAGAAGAAGAGGAACAGATAA 59.874 44.000 0.00 0.00 39.69 1.75
970 1001 3.445805 GTCGGAGAAGAAGAGGAACAGAT 59.554 47.826 0.00 0.00 39.69 2.90
974 1005 2.559231 ACAGTCGGAGAAGAAGAGGAAC 59.441 50.000 0.00 0.00 39.69 3.62
992 1023 0.036952 AGCTCCGTTCATGGTCACAG 60.037 55.000 0.00 0.00 0.00 3.66
1005 1036 1.270305 TGGTTCAACTTCTCAGCTCCG 60.270 52.381 0.00 0.00 0.00 4.63
1012 1043 0.804989 CGGCCATGGTTCAACTTCTC 59.195 55.000 14.67 0.00 0.00 2.87
1017 1048 1.209127 CGTTCGGCCATGGTTCAAC 59.791 57.895 14.67 11.96 0.00 3.18
1018 1049 1.969064 CCGTTCGGCCATGGTTCAA 60.969 57.895 14.67 0.18 0.00 2.69
1061 1092 0.596082 GTGCGTACCATTTTGCCAGT 59.404 50.000 0.00 0.00 0.00 4.00
1097 1128 1.996292 TGATCAGATAATAGCGCGCC 58.004 50.000 30.33 11.57 0.00 6.53
1139 1170 8.973182 AGGGATTAACAAAGTTGTAGTGAAAAA 58.027 29.630 0.00 0.00 41.31 1.94
1152 1183 5.393461 GGATTGCAGACAGGGATTAACAAAG 60.393 44.000 0.00 0.00 0.00 2.77
1159 1190 1.064166 CAGGGATTGCAGACAGGGATT 60.064 52.381 0.00 0.00 0.00 3.01
1241 1272 2.946990 GACGGACTAGAGGGAAGAAGAG 59.053 54.545 0.00 0.00 0.00 2.85
1294 1325 5.070446 TGACCAAGATCAACTAGCCGATTAT 59.930 40.000 0.00 0.00 0.00 1.28
1308 1339 7.301054 CAAAATAACTGTCACTGACCAAGATC 58.699 38.462 6.72 0.00 0.00 2.75
1317 1348 4.466567 TGACGCAAAATAACTGTCACTG 57.533 40.909 0.00 0.00 34.85 3.66
2362 2446 3.506059 ATGCCGGCGATCTCCTTCG 62.506 63.158 23.90 0.00 41.99 3.79
2557 2641 3.665675 AAGATCGCGGTGTGCTCCC 62.666 63.158 6.13 0.00 43.27 4.30
2712 2809 1.542915 ACCTGTGCATGCAAAGATGTC 59.457 47.619 34.90 16.37 33.20 3.06
2858 3017 2.113860 ATCGGCCATATGCATGTACC 57.886 50.000 10.16 7.02 43.89 3.34
2868 3027 4.926832 CGTGTGTTAATGATATCGGCCATA 59.073 41.667 2.24 0.00 0.00 2.74
2869 3028 3.745975 CGTGTGTTAATGATATCGGCCAT 59.254 43.478 2.24 0.00 0.00 4.40
2870 3029 3.127589 CGTGTGTTAATGATATCGGCCA 58.872 45.455 2.24 0.00 0.00 5.36
2872 3031 3.121463 CGACGTGTGTTAATGATATCGGC 60.121 47.826 0.00 0.00 0.00 5.54
3110 3477 4.778143 GCTCCACATCCGCCCGTT 62.778 66.667 0.00 0.00 0.00 4.44
3167 3534 8.474025 TGTTTCCAGTTGTTTCATTACAGAAAT 58.526 29.630 0.00 0.00 39.46 2.17
3185 3554 6.349611 CCTTAATCACTCCAACATGTTTCCAG 60.350 42.308 8.77 7.44 0.00 3.86
3216 3585 7.548075 TCCTACGTTTGATTCACTAAATTCTCC 59.452 37.037 0.00 0.00 0.00 3.71
3217 3586 8.475331 TCCTACGTTTGATTCACTAAATTCTC 57.525 34.615 0.00 0.00 0.00 2.87
3247 3616 4.947388 ACGCCTAGGCATATTCTTGAAAAA 59.053 37.500 32.47 0.00 42.06 1.94
3248 3617 4.523083 ACGCCTAGGCATATTCTTGAAAA 58.477 39.130 32.47 0.00 42.06 2.29
3249 3618 4.150897 ACGCCTAGGCATATTCTTGAAA 57.849 40.909 32.47 0.00 42.06 2.69
3250 3619 3.838244 ACGCCTAGGCATATTCTTGAA 57.162 42.857 32.47 0.00 42.06 2.69
3251 3620 3.006537 GGTACGCCTAGGCATATTCTTGA 59.993 47.826 32.47 0.00 42.06 3.02
3252 3621 3.244078 TGGTACGCCTAGGCATATTCTTG 60.244 47.826 32.47 16.17 42.06 3.02
3253 3622 2.969950 TGGTACGCCTAGGCATATTCTT 59.030 45.455 32.47 10.01 42.06 2.52
3254 3623 2.605257 TGGTACGCCTAGGCATATTCT 58.395 47.619 32.47 9.99 42.06 2.40
3255 3624 3.611766 ATGGTACGCCTAGGCATATTC 57.388 47.619 32.47 18.14 42.06 1.75
3256 3625 3.118738 GCTATGGTACGCCTAGGCATATT 60.119 47.826 32.47 15.89 42.06 1.28
3257 3626 2.431057 GCTATGGTACGCCTAGGCATAT 59.569 50.000 32.47 19.47 42.06 1.78
3258 3627 1.822990 GCTATGGTACGCCTAGGCATA 59.177 52.381 32.47 20.71 42.06 3.14
3259 3628 0.608640 GCTATGGTACGCCTAGGCAT 59.391 55.000 32.47 21.96 42.06 4.40
3260 3629 0.469331 AGCTATGGTACGCCTAGGCA 60.469 55.000 32.47 14.01 42.06 4.75
3261 3630 0.680061 AAGCTATGGTACGCCTAGGC 59.320 55.000 24.75 24.75 35.27 3.93
3262 3631 4.803098 ATAAAGCTATGGTACGCCTAGG 57.197 45.455 3.67 3.67 35.27 3.02
3263 3632 6.754702 TCTATAAAGCTATGGTACGCCTAG 57.245 41.667 0.00 0.00 35.27 3.02
3264 3633 6.152323 CCTTCTATAAAGCTATGGTACGCCTA 59.848 42.308 0.00 0.00 35.27 3.93
3265 3634 5.047235 CCTTCTATAAAGCTATGGTACGCCT 60.047 44.000 0.00 0.00 35.27 5.52
3266 3635 5.169295 CCTTCTATAAAGCTATGGTACGCC 58.831 45.833 0.00 0.00 0.00 5.68
3267 3636 4.626172 GCCTTCTATAAAGCTATGGTACGC 59.374 45.833 0.00 0.00 0.00 4.42
3268 3637 5.779922 TGCCTTCTATAAAGCTATGGTACG 58.220 41.667 0.00 0.00 0.00 3.67
3269 3638 6.994221 TCTGCCTTCTATAAAGCTATGGTAC 58.006 40.000 0.00 0.00 0.00 3.34
3270 3639 7.612065 TTCTGCCTTCTATAAAGCTATGGTA 57.388 36.000 0.00 0.00 0.00 3.25
3271 3640 6.500589 TTCTGCCTTCTATAAAGCTATGGT 57.499 37.500 0.00 0.00 0.00 3.55
3272 3641 7.992754 ATTTCTGCCTTCTATAAAGCTATGG 57.007 36.000 0.00 0.00 0.00 2.74
3273 3642 8.651588 CGTATTTCTGCCTTCTATAAAGCTATG 58.348 37.037 0.00 0.00 0.00 2.23
3274 3643 8.585881 TCGTATTTCTGCCTTCTATAAAGCTAT 58.414 33.333 0.00 0.00 0.00 2.97
3275 3644 7.948357 TCGTATTTCTGCCTTCTATAAAGCTA 58.052 34.615 0.00 0.00 0.00 3.32
3276 3645 6.817184 TCGTATTTCTGCCTTCTATAAAGCT 58.183 36.000 0.00 0.00 0.00 3.74
3277 3646 7.659652 ATCGTATTTCTGCCTTCTATAAAGC 57.340 36.000 0.00 0.00 0.00 3.51
3281 3650 9.692749 CTTGTAATCGTATTTCTGCCTTCTATA 57.307 33.333 0.00 0.00 0.00 1.31
3282 3651 8.204836 ACTTGTAATCGTATTTCTGCCTTCTAT 58.795 33.333 0.00 0.00 0.00 1.98
3283 3652 7.553334 ACTTGTAATCGTATTTCTGCCTTCTA 58.447 34.615 0.00 0.00 0.00 2.10
3284 3653 6.407202 ACTTGTAATCGTATTTCTGCCTTCT 58.593 36.000 0.00 0.00 0.00 2.85
3285 3654 6.663944 ACTTGTAATCGTATTTCTGCCTTC 57.336 37.500 0.00 0.00 0.00 3.46
3286 3655 7.822822 AGTTACTTGTAATCGTATTTCTGCCTT 59.177 33.333 0.00 0.00 0.00 4.35
3287 3656 7.328737 AGTTACTTGTAATCGTATTTCTGCCT 58.671 34.615 0.00 0.00 0.00 4.75
3288 3657 7.535489 AGTTACTTGTAATCGTATTTCTGCC 57.465 36.000 0.00 0.00 0.00 4.85
3289 3658 9.079833 TGTAGTTACTTGTAATCGTATTTCTGC 57.920 33.333 0.00 0.00 0.00 4.26
3294 3663 9.282247 CGAGTTGTAGTTACTTGTAATCGTATT 57.718 33.333 0.00 0.00 0.00 1.89
3295 3664 7.430502 GCGAGTTGTAGTTACTTGTAATCGTAT 59.569 37.037 0.00 0.00 31.00 3.06
3296 3665 6.742718 GCGAGTTGTAGTTACTTGTAATCGTA 59.257 38.462 0.00 0.00 31.00 3.43
3297 3666 5.570589 GCGAGTTGTAGTTACTTGTAATCGT 59.429 40.000 0.00 0.00 31.00 3.73
3298 3667 5.798934 AGCGAGTTGTAGTTACTTGTAATCG 59.201 40.000 0.00 0.00 31.00 3.34
3299 3668 6.453922 GCAGCGAGTTGTAGTTACTTGTAATC 60.454 42.308 0.00 0.00 31.00 1.75
3300 3669 5.347907 GCAGCGAGTTGTAGTTACTTGTAAT 59.652 40.000 0.00 0.00 31.00 1.89
3301 3670 4.682860 GCAGCGAGTTGTAGTTACTTGTAA 59.317 41.667 0.00 0.00 31.00 2.41
3302 3671 4.232221 GCAGCGAGTTGTAGTTACTTGTA 58.768 43.478 0.00 0.00 31.00 2.41
3303 3672 3.057734 GCAGCGAGTTGTAGTTACTTGT 58.942 45.455 0.00 0.00 31.00 3.16
3304 3673 2.090658 CGCAGCGAGTTGTAGTTACTTG 59.909 50.000 9.98 0.00 0.00 3.16
3305 3674 2.030540 TCGCAGCGAGTTGTAGTTACTT 60.031 45.455 15.11 0.00 0.00 2.24
3306 3675 1.538512 TCGCAGCGAGTTGTAGTTACT 59.461 47.619 15.11 0.00 0.00 2.24
3307 3676 1.973138 TCGCAGCGAGTTGTAGTTAC 58.027 50.000 15.11 0.00 0.00 2.50
3308 3677 2.287728 TGTTCGCAGCGAGTTGTAGTTA 60.288 45.455 18.62 0.00 37.14 2.24
3309 3678 1.137513 GTTCGCAGCGAGTTGTAGTT 58.862 50.000 18.62 0.00 37.14 2.24
3310 3679 0.031585 TGTTCGCAGCGAGTTGTAGT 59.968 50.000 18.62 0.00 37.14 2.73
3311 3680 0.710567 CTGTTCGCAGCGAGTTGTAG 59.289 55.000 18.62 9.18 38.53 2.74
3312 3681 2.809181 CTGTTCGCAGCGAGTTGTA 58.191 52.632 18.62 0.00 38.53 2.41
3313 3682 3.630204 CTGTTCGCAGCGAGTTGT 58.370 55.556 18.62 0.00 38.53 3.32
3322 3691 2.167219 GCTATGCTCGCTGTTCGCA 61.167 57.895 0.00 0.00 39.08 5.10
3323 3692 1.493950 ATGCTATGCTCGCTGTTCGC 61.494 55.000 0.00 0.00 38.27 4.70
3324 3693 0.231534 CATGCTATGCTCGCTGTTCG 59.768 55.000 0.00 0.00 40.15 3.95
3325 3694 1.575244 TCATGCTATGCTCGCTGTTC 58.425 50.000 0.00 0.00 0.00 3.18
3326 3695 1.667724 GTTCATGCTATGCTCGCTGTT 59.332 47.619 0.00 0.00 0.00 3.16
3327 3696 1.293924 GTTCATGCTATGCTCGCTGT 58.706 50.000 0.00 0.00 0.00 4.40
3328 3697 1.292992 TGTTCATGCTATGCTCGCTG 58.707 50.000 0.00 0.00 0.00 5.18
3329 3698 2.141517 GATGTTCATGCTATGCTCGCT 58.858 47.619 0.00 0.00 0.00 4.93
3330 3699 1.869132 TGATGTTCATGCTATGCTCGC 59.131 47.619 0.00 0.00 0.00 5.03
3331 3700 2.867975 TGTGATGTTCATGCTATGCTCG 59.132 45.455 0.00 0.00 0.00 5.03
3332 3701 4.497006 GGTTGTGATGTTCATGCTATGCTC 60.497 45.833 0.00 0.00 0.00 4.26
3333 3702 3.379372 GGTTGTGATGTTCATGCTATGCT 59.621 43.478 0.00 0.00 0.00 3.79
3334 3703 3.699067 GGTTGTGATGTTCATGCTATGC 58.301 45.455 0.00 0.00 0.00 3.14
3335 3704 3.242837 CCGGTTGTGATGTTCATGCTATG 60.243 47.826 0.00 0.00 0.00 2.23
3336 3705 2.945008 CCGGTTGTGATGTTCATGCTAT 59.055 45.455 0.00 0.00 0.00 2.97
3337 3706 2.355197 CCGGTTGTGATGTTCATGCTA 58.645 47.619 0.00 0.00 0.00 3.49
3338 3707 1.167851 CCGGTTGTGATGTTCATGCT 58.832 50.000 0.00 0.00 0.00 3.79
3339 3708 0.171007 CCCGGTTGTGATGTTCATGC 59.829 55.000 0.00 0.00 0.00 4.06
3340 3709 1.533625 ACCCGGTTGTGATGTTCATG 58.466 50.000 0.00 0.00 0.00 3.07
3341 3710 3.008594 TCTTACCCGGTTGTGATGTTCAT 59.991 43.478 0.00 0.00 0.00 2.57
3342 3711 2.369203 TCTTACCCGGTTGTGATGTTCA 59.631 45.455 0.00 0.00 0.00 3.18
3343 3712 2.740447 GTCTTACCCGGTTGTGATGTTC 59.260 50.000 0.00 0.00 0.00 3.18
3344 3713 2.551504 GGTCTTACCCGGTTGTGATGTT 60.552 50.000 0.00 0.00 30.04 2.71
3345 3714 1.002773 GGTCTTACCCGGTTGTGATGT 59.997 52.381 0.00 0.00 30.04 3.06
3346 3715 1.734163 GGTCTTACCCGGTTGTGATG 58.266 55.000 0.00 0.00 30.04 3.07
3357 3726 2.953453 AGGGTGTTTTTGGGTCTTACC 58.047 47.619 0.00 0.00 37.60 2.85
3358 3727 3.004002 CGAAGGGTGTTTTTGGGTCTTAC 59.996 47.826 0.00 0.00 0.00 2.34
3359 3728 3.117963 TCGAAGGGTGTTTTTGGGTCTTA 60.118 43.478 0.00 0.00 0.00 2.10
3360 3729 2.028876 CGAAGGGTGTTTTTGGGTCTT 58.971 47.619 0.00 0.00 0.00 3.01
3361 3730 1.213430 TCGAAGGGTGTTTTTGGGTCT 59.787 47.619 0.00 0.00 0.00 3.85
3362 3731 1.335810 GTCGAAGGGTGTTTTTGGGTC 59.664 52.381 0.00 0.00 0.00 4.46
3363 3732 1.395635 GTCGAAGGGTGTTTTTGGGT 58.604 50.000 0.00 0.00 0.00 4.51
3364 3733 0.671796 GGTCGAAGGGTGTTTTTGGG 59.328 55.000 0.00 0.00 0.00 4.12
3365 3734 1.066454 GTGGTCGAAGGGTGTTTTTGG 59.934 52.381 0.00 0.00 0.00 3.28
3366 3735 1.746220 TGTGGTCGAAGGGTGTTTTTG 59.254 47.619 0.00 0.00 0.00 2.44
3367 3736 1.746787 GTGTGGTCGAAGGGTGTTTTT 59.253 47.619 0.00 0.00 0.00 1.94
3368 3737 1.340211 TGTGTGGTCGAAGGGTGTTTT 60.340 47.619 0.00 0.00 0.00 2.43
3369 3738 0.253610 TGTGTGGTCGAAGGGTGTTT 59.746 50.000 0.00 0.00 0.00 2.83
3370 3739 0.463116 GTGTGTGGTCGAAGGGTGTT 60.463 55.000 0.00 0.00 0.00 3.32
3371 3740 1.145377 GTGTGTGGTCGAAGGGTGT 59.855 57.895 0.00 0.00 0.00 4.16
3372 3741 0.677288 TAGTGTGTGGTCGAAGGGTG 59.323 55.000 0.00 0.00 0.00 4.61
3373 3742 0.677842 GTAGTGTGTGGTCGAAGGGT 59.322 55.000 0.00 0.00 0.00 4.34
3374 3743 0.677288 TGTAGTGTGTGGTCGAAGGG 59.323 55.000 0.00 0.00 0.00 3.95
3375 3744 2.404215 CTTGTAGTGTGTGGTCGAAGG 58.596 52.381 0.00 0.00 0.00 3.46
3376 3745 1.792949 GCTTGTAGTGTGTGGTCGAAG 59.207 52.381 0.00 0.00 0.00 3.79
3377 3746 1.137282 TGCTTGTAGTGTGTGGTCGAA 59.863 47.619 0.00 0.00 0.00 3.71
3378 3747 0.747852 TGCTTGTAGTGTGTGGTCGA 59.252 50.000 0.00 0.00 0.00 4.20
3379 3748 1.260561 GTTGCTTGTAGTGTGTGGTCG 59.739 52.381 0.00 0.00 0.00 4.79
3380 3749 1.602377 GGTTGCTTGTAGTGTGTGGTC 59.398 52.381 0.00 0.00 0.00 4.02
3381 3750 1.675552 GGTTGCTTGTAGTGTGTGGT 58.324 50.000 0.00 0.00 0.00 4.16
3382 3751 0.951558 GGGTTGCTTGTAGTGTGTGG 59.048 55.000 0.00 0.00 0.00 4.17
3383 3752 0.586319 CGGGTTGCTTGTAGTGTGTG 59.414 55.000 0.00 0.00 0.00 3.82
3384 3753 0.534203 CCGGGTTGCTTGTAGTGTGT 60.534 55.000 0.00 0.00 0.00 3.72
3385 3754 1.852067 GCCGGGTTGCTTGTAGTGTG 61.852 60.000 2.18 0.00 0.00 3.82
3386 3755 1.599797 GCCGGGTTGCTTGTAGTGT 60.600 57.895 2.18 0.00 0.00 3.55
3387 3756 1.302511 AGCCGGGTTGCTTGTAGTG 60.303 57.895 0.00 0.00 38.85 2.74
3388 3757 1.302511 CAGCCGGGTTGCTTGTAGT 60.303 57.895 1.64 0.00 40.32 2.73
3389 3758 0.392998 ATCAGCCGGGTTGCTTGTAG 60.393 55.000 1.64 0.00 40.32 2.74
3390 3759 0.906066 TATCAGCCGGGTTGCTTGTA 59.094 50.000 1.64 0.00 40.32 2.41
3391 3760 0.037590 TTATCAGCCGGGTTGCTTGT 59.962 50.000 1.64 0.00 40.32 3.16
3392 3761 0.451783 GTTATCAGCCGGGTTGCTTG 59.548 55.000 1.64 0.00 40.32 4.01
3393 3762 0.679960 GGTTATCAGCCGGGTTGCTT 60.680 55.000 1.64 0.00 40.32 3.91
3394 3763 1.077716 GGTTATCAGCCGGGTTGCT 60.078 57.895 1.64 0.00 44.00 3.91
3395 3764 2.119029 GGGTTATCAGCCGGGTTGC 61.119 63.158 1.64 0.00 0.00 4.17
3396 3765 1.029947 GTGGGTTATCAGCCGGGTTG 61.030 60.000 1.64 4.25 44.44 3.77
3397 3766 1.301954 GTGGGTTATCAGCCGGGTT 59.698 57.895 1.64 0.00 44.44 4.11
3398 3767 1.493854 TTGTGGGTTATCAGCCGGGT 61.494 55.000 0.00 0.00 44.44 5.28
3399 3768 0.748005 CTTGTGGGTTATCAGCCGGG 60.748 60.000 2.18 0.00 44.44 5.73
3400 3769 0.035439 ACTTGTGGGTTATCAGCCGG 60.035 55.000 0.00 0.00 44.44 6.13
3401 3770 2.684001 TACTTGTGGGTTATCAGCCG 57.316 50.000 0.00 0.00 44.44 5.52
3402 3771 4.505039 CCCTATACTTGTGGGTTATCAGCC 60.505 50.000 0.00 0.00 41.49 4.85
3613 3982 7.095774 ACGATTACTACAAAACTGCTACTGTTG 60.096 37.037 0.00 0.00 0.00 3.33
3690 4063 4.141205 TCCATCATTGATCCATTGCCTACA 60.141 41.667 0.00 0.00 0.00 2.74
3734 4107 8.880244 ACCCTATGTTATAACTATTGCATGAGA 58.120 33.333 16.33 0.00 0.00 3.27
3773 4146 7.716998 GGATACATTACATTGATGAACTGGAGT 59.283 37.037 0.00 0.00 0.00 3.85
3797 4170 8.403236 CGTATGACTATATTCGGAATACATGGA 58.597 37.037 12.39 0.00 0.00 3.41
3798 4171 8.188799 ACGTATGACTATATTCGGAATACATGG 58.811 37.037 12.39 4.28 0.00 3.66
3832 4205 7.550196 ACAAAAGATGTCATGCAAGTTCTTTTT 59.450 29.630 18.26 8.01 39.75 1.94
3859 4232 2.134287 GCTGCCACGGGAGGATAGA 61.134 63.158 6.73 0.00 34.01 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.