Multiple sequence alignment - TraesCS2D01G488700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G488700 chr2D 100.000 4679 0 0 1 4679 588132778 588137456 0.000000e+00 8641.0
1 TraesCS2D01G488700 chr2D 86.996 223 22 7 4459 4679 588168557 588168774 1.300000e-60 244.0
2 TraesCS2D01G488700 chr2B 92.933 3495 167 25 626 4055 710976288 710979767 0.000000e+00 5012.0
3 TraesCS2D01G488700 chr2B 89.643 280 26 3 4402 4679 710985974 710986252 2.070000e-93 353.0
4 TraesCS2D01G488700 chr2B 88.987 227 16 8 4179 4403 710985711 710985930 5.970000e-69 272.0
5 TraesCS2D01G488700 chr2B 88.288 222 16 7 4459 4679 711307183 711307395 1.670000e-64 257.0
6 TraesCS2D01G488700 chr2B 95.890 73 2 1 4057 4129 710979864 710979935 2.960000e-22 117.0
7 TraesCS2D01G488700 chr2B 97.619 42 1 0 2817 2858 710978486 710978527 6.490000e-09 73.1
8 TraesCS2D01G488700 chr2A 88.130 2182 164 46 354 2465 722744902 722747058 0.000000e+00 2507.0
9 TraesCS2D01G488700 chr2A 94.565 736 37 2 3348 4080 722748102 722748837 0.000000e+00 1134.0
10 TraesCS2D01G488700 chr2A 91.626 824 52 11 2477 3297 722747274 722748083 0.000000e+00 1123.0
11 TraesCS2D01G488700 chr2A 87.770 417 46 4 32 447 737450993 737450581 2.530000e-132 483.0
12 TraesCS2D01G488700 chr2A 90.323 279 25 2 4402 4679 722749373 722749650 9.570000e-97 364.0
13 TraesCS2D01G488700 chr2A 84.615 338 28 10 4072 4401 722749018 722749339 9.770000e-82 315.0
14 TraesCS2D01G488700 chrUn 89.681 407 36 5 32 437 201360310 201360711 8.980000e-142 514.0
15 TraesCS2D01G488700 chrUn 88.969 417 39 6 32 447 154525773 154526183 4.180000e-140 508.0
16 TraesCS2D01G488700 chr6A 88.517 418 43 4 32 447 560511351 560510937 6.990000e-138 501.0
17 TraesCS2D01G488700 chr6A 88.434 415 46 1 32 446 560352735 560352323 2.510000e-137 499.0
18 TraesCS2D01G488700 chr6A 88.434 415 46 1 32 446 560394084 560393672 2.510000e-137 499.0
19 TraesCS2D01G488700 chr6A 88.406 414 43 4 35 447 560466833 560466424 1.170000e-135 494.0
20 TraesCS2D01G488700 chr7B 88.164 414 46 2 32 445 164169214 164169624 1.510000e-134 490.0
21 TraesCS2D01G488700 chr7B 84.946 279 30 6 4403 4675 591582146 591581874 5.970000e-69 272.0
22 TraesCS2D01G488700 chr7B 84.532 278 32 6 4402 4675 591062867 591063137 9.980000e-67 265.0
23 TraesCS2D01G488700 chr7B 86.239 218 25 4 4459 4675 591114289 591114502 1.010000e-56 231.0
24 TraesCS2D01G488700 chr7D 87.290 417 48 4 32 447 511604117 511604529 5.480000e-129 472.0
25 TraesCS2D01G488700 chr7D 82.437 279 40 7 4403 4675 548070429 548070704 7.830000e-58 235.0
26 TraesCS2D01G488700 chr7A 87.215 219 23 4 4459 4675 631882194 631882409 1.300000e-60 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G488700 chr2D 588132778 588137456 4678 False 8641.000000 8641 100.000000 1 4679 1 chr2D.!!$F1 4678
1 TraesCS2D01G488700 chr2B 710976288 710979935 3647 False 1734.033333 5012 95.480667 626 4129 3 chr2B.!!$F2 3503
2 TraesCS2D01G488700 chr2B 710985711 710986252 541 False 312.500000 353 89.315000 4179 4679 2 chr2B.!!$F3 500
3 TraesCS2D01G488700 chr2A 722744902 722749650 4748 False 1088.600000 2507 89.851800 354 4679 5 chr2A.!!$F1 4325

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 291 0.026803 GTCAAGATCAATCGCCACGC 59.973 55.0 0.00 0.0 0.0 5.34 F
297 298 0.109827 TCAATCGCCACGCAAACATG 60.110 50.0 0.00 0.0 0.0 3.21 F
1458 1481 0.391130 TAGGCTGGTGTGACGAATGC 60.391 55.0 0.00 0.0 0.0 3.56 F
2047 2099 0.253160 TAACAGCTGGGATGGGAGGT 60.253 55.0 19.93 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1361 1381 0.251341 AGGAAGGAAACAATGCCGCT 60.251 50.000 0.00 0.00 0.00 5.52 R
1808 1852 0.528017 TTTTTCAGCGCACCAACACA 59.472 45.000 11.47 0.00 0.00 3.72 R
2997 3297 0.833287 GAGCCCAGGTATCTGCAGAA 59.167 55.000 22.50 7.51 39.61 3.02 R
3944 4249 1.261619 CTAGCCGGATTCAACAATCGC 59.738 52.381 5.05 0.00 39.64 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.830873 AGTCATTCTTTCTTCTTGGGATTG 57.169 37.500 0.00 0.00 0.00 2.67
25 26 5.184671 AGTCATTCTTTCTTCTTGGGATTGC 59.815 40.000 0.00 0.00 0.00 3.56
26 27 4.463891 TCATTCTTTCTTCTTGGGATTGCC 59.536 41.667 0.00 0.00 0.00 4.52
27 28 3.524095 TCTTTCTTCTTGGGATTGCCA 57.476 42.857 0.00 0.00 35.15 4.92
28 29 3.843422 TCTTTCTTCTTGGGATTGCCAA 58.157 40.909 9.47 9.47 35.15 4.52
29 30 3.828451 TCTTTCTTCTTGGGATTGCCAAG 59.172 43.478 26.24 26.24 44.05 3.61
30 31 2.978156 TCTTCTTGGGATTGCCAAGT 57.022 45.000 29.28 0.00 43.41 3.16
31 32 4.380843 TTCTTCTTGGGATTGCCAAGTA 57.619 40.909 29.28 21.86 43.41 2.24
32 33 3.955471 TCTTCTTGGGATTGCCAAGTAG 58.045 45.455 29.28 28.12 43.41 2.57
33 34 3.330701 TCTTCTTGGGATTGCCAAGTAGT 59.669 43.478 29.56 0.00 43.41 2.73
34 35 3.350219 TCTTGGGATTGCCAAGTAGTC 57.650 47.619 29.28 0.00 43.41 2.59
35 36 2.642311 TCTTGGGATTGCCAAGTAGTCA 59.358 45.455 29.28 12.67 43.41 3.41
36 37 3.266772 TCTTGGGATTGCCAAGTAGTCAT 59.733 43.478 29.28 0.00 43.41 3.06
37 38 3.737559 TGGGATTGCCAAGTAGTCATT 57.262 42.857 0.00 0.00 35.15 2.57
38 39 3.620488 TGGGATTGCCAAGTAGTCATTC 58.380 45.455 0.00 0.00 35.15 2.67
39 40 3.266772 TGGGATTGCCAAGTAGTCATTCT 59.733 43.478 0.00 0.00 35.15 2.40
40 41 4.263905 TGGGATTGCCAAGTAGTCATTCTT 60.264 41.667 0.00 0.00 35.15 2.52
41 42 4.706962 GGGATTGCCAAGTAGTCATTCTTT 59.293 41.667 0.00 0.00 35.15 2.52
42 43 5.163612 GGGATTGCCAAGTAGTCATTCTTTC 60.164 44.000 0.00 0.00 35.15 2.62
43 44 5.649831 GGATTGCCAAGTAGTCATTCTTTCT 59.350 40.000 0.00 0.00 0.00 2.52
44 45 6.151817 GGATTGCCAAGTAGTCATTCTTTCTT 59.848 38.462 0.00 0.00 0.00 2.52
45 46 6.560253 TTGCCAAGTAGTCATTCTTTCTTC 57.440 37.500 0.00 0.00 0.00 2.87
46 47 5.869579 TGCCAAGTAGTCATTCTTTCTTCT 58.130 37.500 0.00 0.00 0.00 2.85
47 48 6.299141 TGCCAAGTAGTCATTCTTTCTTCTT 58.701 36.000 0.00 0.00 0.00 2.52
48 49 6.205464 TGCCAAGTAGTCATTCTTTCTTCTTG 59.795 38.462 0.00 0.00 36.81 3.02
49 50 7.138692 CCAAGTAGTCATTCTTTCTTCTTGG 57.861 40.000 12.63 12.63 44.07 3.61
50 51 6.150140 CCAAGTAGTCATTCTTTCTTCTTGGG 59.850 42.308 16.44 4.55 44.88 4.12
51 52 6.688073 AGTAGTCATTCTTTCTTCTTGGGA 57.312 37.500 0.00 0.00 0.00 4.37
52 53 7.264294 AGTAGTCATTCTTTCTTCTTGGGAT 57.736 36.000 0.00 0.00 0.00 3.85
53 54 7.694093 AGTAGTCATTCTTTCTTCTTGGGATT 58.306 34.615 0.00 0.00 0.00 3.01
54 55 8.166726 AGTAGTCATTCTTTCTTCTTGGGATTT 58.833 33.333 0.00 0.00 0.00 2.17
55 56 7.846101 AGTCATTCTTTCTTCTTGGGATTTT 57.154 32.000 0.00 0.00 0.00 1.82
56 57 8.940397 AGTCATTCTTTCTTCTTGGGATTTTA 57.060 30.769 0.00 0.00 0.00 1.52
57 58 9.539194 AGTCATTCTTTCTTCTTGGGATTTTAT 57.461 29.630 0.00 0.00 0.00 1.40
60 61 9.374838 CATTCTTTCTTCTTGGGATTTTATTGG 57.625 33.333 0.00 0.00 0.00 3.16
61 62 7.480760 TCTTTCTTCTTGGGATTTTATTGGG 57.519 36.000 0.00 0.00 0.00 4.12
62 63 7.016296 TCTTTCTTCTTGGGATTTTATTGGGT 58.984 34.615 0.00 0.00 0.00 4.51
63 64 6.850752 TTCTTCTTGGGATTTTATTGGGTC 57.149 37.500 0.00 0.00 0.00 4.46
64 65 4.947388 TCTTCTTGGGATTTTATTGGGTCG 59.053 41.667 0.00 0.00 0.00 4.79
65 66 4.310022 TCTTGGGATTTTATTGGGTCGT 57.690 40.909 0.00 0.00 0.00 4.34
66 67 4.013728 TCTTGGGATTTTATTGGGTCGTG 58.986 43.478 0.00 0.00 0.00 4.35
67 68 2.096248 TGGGATTTTATTGGGTCGTGC 58.904 47.619 0.00 0.00 0.00 5.34
68 69 2.096248 GGGATTTTATTGGGTCGTGCA 58.904 47.619 0.00 0.00 0.00 4.57
69 70 2.159296 GGGATTTTATTGGGTCGTGCAC 60.159 50.000 6.82 6.82 0.00 4.57
70 71 2.477189 GGATTTTATTGGGTCGTGCACG 60.477 50.000 32.76 32.76 41.45 5.34
71 72 1.595466 TTTTATTGGGTCGTGCACGT 58.405 45.000 35.74 19.86 40.80 4.49
72 73 0.869068 TTTATTGGGTCGTGCACGTG 59.131 50.000 35.74 12.28 40.80 4.49
73 74 0.249953 TTATTGGGTCGTGCACGTGT 60.250 50.000 35.74 19.04 40.80 4.49
74 75 0.946700 TATTGGGTCGTGCACGTGTG 60.947 55.000 35.74 11.18 40.80 3.82
75 76 2.933878 ATTGGGTCGTGCACGTGTGT 62.934 55.000 35.74 16.97 40.80 3.72
76 77 2.893404 GGGTCGTGCACGTGTGTT 60.893 61.111 35.74 0.00 40.80 3.32
77 78 2.323105 GGTCGTGCACGTGTGTTG 59.677 61.111 35.74 9.23 40.80 3.33
78 79 2.168503 GGTCGTGCACGTGTGTTGA 61.169 57.895 35.74 14.71 40.80 3.18
79 80 1.495584 GGTCGTGCACGTGTGTTGAT 61.496 55.000 35.74 0.00 40.80 2.57
80 81 0.383002 GTCGTGCACGTGTGTTGATG 60.383 55.000 35.74 6.92 40.80 3.07
81 82 0.528684 TCGTGCACGTGTGTTGATGA 60.529 50.000 35.74 12.39 40.80 2.92
82 83 0.303191 CGTGCACGTGTGTTGATGAA 59.697 50.000 30.50 0.00 34.11 2.57
83 84 1.657260 CGTGCACGTGTGTTGATGAAG 60.657 52.381 30.50 0.00 34.11 3.02
84 85 0.307453 TGCACGTGTGTTGATGAAGC 59.693 50.000 18.38 0.00 0.00 3.86
85 86 0.722469 GCACGTGTGTTGATGAAGCG 60.722 55.000 18.38 0.00 0.00 4.68
86 87 0.110688 CACGTGTGTTGATGAAGCGG 60.111 55.000 7.58 0.00 0.00 5.52
87 88 0.249699 ACGTGTGTTGATGAAGCGGA 60.250 50.000 0.00 0.00 0.00 5.54
88 89 0.439985 CGTGTGTTGATGAAGCGGAG 59.560 55.000 0.00 0.00 0.00 4.63
89 90 1.795768 GTGTGTTGATGAAGCGGAGA 58.204 50.000 0.00 0.00 0.00 3.71
90 91 2.350522 GTGTGTTGATGAAGCGGAGAT 58.649 47.619 0.00 0.00 0.00 2.75
91 92 2.744202 GTGTGTTGATGAAGCGGAGATT 59.256 45.455 0.00 0.00 41.04 2.40
101 102 3.554692 CGGAGATTCGCACGTGCC 61.555 66.667 33.23 19.74 37.91 5.01
102 103 2.125512 GGAGATTCGCACGTGCCT 60.126 61.111 33.23 24.12 37.91 4.75
103 104 1.741770 GGAGATTCGCACGTGCCTT 60.742 57.895 33.23 18.73 37.91 4.35
104 105 1.421485 GAGATTCGCACGTGCCTTG 59.579 57.895 33.23 20.25 37.91 3.61
105 106 2.202349 GATTCGCACGTGCCTTGC 60.202 61.111 33.23 17.37 37.91 4.01
106 107 3.667429 GATTCGCACGTGCCTTGCC 62.667 63.158 33.23 15.66 36.57 4.52
117 118 2.911143 CCTTGCCGGGCTCTATGT 59.089 61.111 21.46 0.00 0.00 2.29
118 119 1.224592 CCTTGCCGGGCTCTATGTT 59.775 57.895 21.46 0.00 0.00 2.71
119 120 1.097547 CCTTGCCGGGCTCTATGTTG 61.098 60.000 21.46 1.43 0.00 3.33
120 121 1.077787 TTGCCGGGCTCTATGTTGG 60.078 57.895 21.46 0.00 0.00 3.77
121 122 1.847798 TTGCCGGGCTCTATGTTGGT 61.848 55.000 21.46 0.00 0.00 3.67
122 123 0.978667 TGCCGGGCTCTATGTTGGTA 60.979 55.000 21.46 0.00 0.00 3.25
123 124 0.532196 GCCGGGCTCTATGTTGGTAC 60.532 60.000 12.87 0.00 0.00 3.34
124 125 1.120530 CCGGGCTCTATGTTGGTACT 58.879 55.000 0.00 0.00 0.00 2.73
125 126 2.313317 CCGGGCTCTATGTTGGTACTA 58.687 52.381 0.00 0.00 0.00 1.82
126 127 2.296471 CCGGGCTCTATGTTGGTACTAG 59.704 54.545 0.00 0.00 0.00 2.57
127 128 2.957006 CGGGCTCTATGTTGGTACTAGT 59.043 50.000 0.00 0.00 0.00 2.57
128 129 3.004524 CGGGCTCTATGTTGGTACTAGTC 59.995 52.174 0.00 0.00 0.00 2.59
129 130 4.216708 GGGCTCTATGTTGGTACTAGTCT 58.783 47.826 0.00 0.00 0.00 3.24
130 131 4.278919 GGGCTCTATGTTGGTACTAGTCTC 59.721 50.000 0.00 0.00 0.00 3.36
131 132 4.888239 GGCTCTATGTTGGTACTAGTCTCA 59.112 45.833 0.00 0.00 0.00 3.27
132 133 5.360144 GGCTCTATGTTGGTACTAGTCTCAA 59.640 44.000 0.00 2.50 0.00 3.02
133 134 6.041069 GGCTCTATGTTGGTACTAGTCTCAAT 59.959 42.308 0.00 0.00 0.00 2.57
134 135 7.230913 GGCTCTATGTTGGTACTAGTCTCAATA 59.769 40.741 0.00 4.41 0.00 1.90
135 136 8.630917 GCTCTATGTTGGTACTAGTCTCAATAA 58.369 37.037 0.00 0.00 0.00 1.40
138 139 9.530633 CTATGTTGGTACTAGTCTCAATAAACC 57.469 37.037 0.00 0.00 0.00 3.27
139 140 6.704310 TGTTGGTACTAGTCTCAATAAACCC 58.296 40.000 0.00 0.00 0.00 4.11
140 141 6.270463 TGTTGGTACTAGTCTCAATAAACCCA 59.730 38.462 0.00 0.00 0.00 4.51
141 142 7.037873 TGTTGGTACTAGTCTCAATAAACCCAT 60.038 37.037 0.00 0.00 0.00 4.00
142 143 7.504926 TGGTACTAGTCTCAATAAACCCATT 57.495 36.000 0.00 0.00 0.00 3.16
143 144 7.924541 TGGTACTAGTCTCAATAAACCCATTT 58.075 34.615 0.00 0.00 0.00 2.32
144 145 8.387813 TGGTACTAGTCTCAATAAACCCATTTT 58.612 33.333 0.00 0.00 0.00 1.82
145 146 9.895138 GGTACTAGTCTCAATAAACCCATTTTA 57.105 33.333 0.00 0.00 34.08 1.52
162 163 9.289782 ACCCATTTTATTGTAGAATCTGATAGC 57.710 33.333 0.00 0.00 0.00 2.97
163 164 9.512588 CCCATTTTATTGTAGAATCTGATAGCT 57.487 33.333 0.00 0.00 0.00 3.32
171 172 8.484641 TTGTAGAATCTGATAGCTCTTTTGTG 57.515 34.615 0.00 0.00 0.00 3.33
172 173 7.044181 TGTAGAATCTGATAGCTCTTTTGTGG 58.956 38.462 0.00 0.00 0.00 4.17
173 174 6.059787 AGAATCTGATAGCTCTTTTGTGGT 57.940 37.500 0.00 0.00 0.00 4.16
174 175 6.479884 AGAATCTGATAGCTCTTTTGTGGTT 58.520 36.000 0.00 0.00 0.00 3.67
175 176 6.597280 AGAATCTGATAGCTCTTTTGTGGTTC 59.403 38.462 0.00 0.00 0.00 3.62
176 177 4.579869 TCTGATAGCTCTTTTGTGGTTCC 58.420 43.478 0.00 0.00 0.00 3.62
177 178 3.686016 TGATAGCTCTTTTGTGGTTCCC 58.314 45.455 0.00 0.00 0.00 3.97
178 179 3.330701 TGATAGCTCTTTTGTGGTTCCCT 59.669 43.478 0.00 0.00 0.00 4.20
179 180 2.755952 AGCTCTTTTGTGGTTCCCTT 57.244 45.000 0.00 0.00 0.00 3.95
180 181 3.032265 AGCTCTTTTGTGGTTCCCTTT 57.968 42.857 0.00 0.00 0.00 3.11
181 182 2.959030 AGCTCTTTTGTGGTTCCCTTTC 59.041 45.455 0.00 0.00 0.00 2.62
182 183 2.959030 GCTCTTTTGTGGTTCCCTTTCT 59.041 45.455 0.00 0.00 0.00 2.52
183 184 3.384789 GCTCTTTTGTGGTTCCCTTTCTT 59.615 43.478 0.00 0.00 0.00 2.52
184 185 4.737649 GCTCTTTTGTGGTTCCCTTTCTTG 60.738 45.833 0.00 0.00 0.00 3.02
185 186 3.132111 TCTTTTGTGGTTCCCTTTCTTGC 59.868 43.478 0.00 0.00 0.00 4.01
186 187 2.151502 TTGTGGTTCCCTTTCTTGCA 57.848 45.000 0.00 0.00 0.00 4.08
187 188 2.151502 TGTGGTTCCCTTTCTTGCAA 57.848 45.000 0.00 0.00 0.00 4.08
188 189 2.461695 TGTGGTTCCCTTTCTTGCAAA 58.538 42.857 0.00 0.00 0.00 3.68
189 190 3.037549 TGTGGTTCCCTTTCTTGCAAAT 58.962 40.909 0.00 0.00 0.00 2.32
190 191 3.181467 TGTGGTTCCCTTTCTTGCAAATG 60.181 43.478 0.00 0.00 0.00 2.32
191 192 3.069443 GTGGTTCCCTTTCTTGCAAATGA 59.931 43.478 0.00 0.00 0.00 2.57
192 193 3.903090 TGGTTCCCTTTCTTGCAAATGAT 59.097 39.130 0.00 0.00 0.00 2.45
193 194 4.347583 TGGTTCCCTTTCTTGCAAATGATT 59.652 37.500 0.00 0.00 0.00 2.57
194 195 5.163216 TGGTTCCCTTTCTTGCAAATGATTT 60.163 36.000 0.00 0.00 0.00 2.17
195 196 5.764686 GGTTCCCTTTCTTGCAAATGATTTT 59.235 36.000 0.00 0.00 0.00 1.82
196 197 6.293571 GGTTCCCTTTCTTGCAAATGATTTTG 60.294 38.462 0.00 0.00 44.18 2.44
197 198 5.927819 TCCCTTTCTTGCAAATGATTTTGT 58.072 33.333 0.00 0.00 43.43 2.83
198 199 6.355747 TCCCTTTCTTGCAAATGATTTTGTT 58.644 32.000 0.00 0.00 43.43 2.83
199 200 6.260493 TCCCTTTCTTGCAAATGATTTTGTTG 59.740 34.615 0.00 0.00 43.43 3.33
200 201 6.260493 CCCTTTCTTGCAAATGATTTTGTTGA 59.740 34.615 0.00 0.00 43.43 3.18
201 202 7.127686 CCTTTCTTGCAAATGATTTTGTTGAC 58.872 34.615 0.00 0.00 43.43 3.18
202 203 7.201626 CCTTTCTTGCAAATGATTTTGTTGACA 60.202 33.333 0.00 0.00 43.43 3.58
203 204 6.831727 TCTTGCAAATGATTTTGTTGACAG 57.168 33.333 0.00 0.00 43.43 3.51
204 205 5.754406 TCTTGCAAATGATTTTGTTGACAGG 59.246 36.000 0.00 0.00 43.43 4.00
205 206 5.021033 TGCAAATGATTTTGTTGACAGGT 57.979 34.783 0.00 0.00 43.43 4.00
206 207 5.426504 TGCAAATGATTTTGTTGACAGGTT 58.573 33.333 0.00 0.00 43.43 3.50
207 208 5.523188 TGCAAATGATTTTGTTGACAGGTTC 59.477 36.000 0.00 0.00 43.43 3.62
208 209 5.050159 GCAAATGATTTTGTTGACAGGTTCC 60.050 40.000 0.00 0.00 43.43 3.62
209 210 6.282930 CAAATGATTTTGTTGACAGGTTCCT 58.717 36.000 0.00 0.00 37.92 3.36
210 211 6.484364 AATGATTTTGTTGACAGGTTCCTT 57.516 33.333 0.00 0.00 0.00 3.36
211 212 5.930837 TGATTTTGTTGACAGGTTCCTTT 57.069 34.783 0.00 0.00 0.00 3.11
212 213 6.293004 TGATTTTGTTGACAGGTTCCTTTT 57.707 33.333 0.00 0.00 0.00 2.27
213 214 6.706295 TGATTTTGTTGACAGGTTCCTTTTT 58.294 32.000 0.00 0.00 0.00 1.94
214 215 6.593382 TGATTTTGTTGACAGGTTCCTTTTTG 59.407 34.615 0.00 0.00 0.00 2.44
215 216 5.476091 TTTGTTGACAGGTTCCTTTTTGT 57.524 34.783 0.00 0.00 0.00 2.83
216 217 5.476091 TTGTTGACAGGTTCCTTTTTGTT 57.524 34.783 0.00 0.00 0.00 2.83
217 218 4.815269 TGTTGACAGGTTCCTTTTTGTTG 58.185 39.130 0.00 0.00 0.00 3.33
218 219 4.524714 TGTTGACAGGTTCCTTTTTGTTGA 59.475 37.500 0.00 0.00 0.00 3.18
219 220 5.186797 TGTTGACAGGTTCCTTTTTGTTGAT 59.813 36.000 0.00 0.00 0.00 2.57
220 221 5.514274 TGACAGGTTCCTTTTTGTTGATC 57.486 39.130 0.00 0.00 0.00 2.92
221 222 5.200483 TGACAGGTTCCTTTTTGTTGATCT 58.800 37.500 0.00 0.00 0.00 2.75
222 223 5.656416 TGACAGGTTCCTTTTTGTTGATCTT 59.344 36.000 0.00 0.00 0.00 2.40
223 224 6.831353 TGACAGGTTCCTTTTTGTTGATCTTA 59.169 34.615 0.00 0.00 0.00 2.10
224 225 7.340743 TGACAGGTTCCTTTTTGTTGATCTTAA 59.659 33.333 0.00 0.00 0.00 1.85
225 226 7.716612 ACAGGTTCCTTTTTGTTGATCTTAAG 58.283 34.615 0.00 0.00 0.00 1.85
226 227 7.559897 ACAGGTTCCTTTTTGTTGATCTTAAGA 59.440 33.333 7.82 7.82 0.00 2.10
227 228 8.078596 CAGGTTCCTTTTTGTTGATCTTAAGAG 58.921 37.037 11.53 0.00 0.00 2.85
228 229 7.231519 AGGTTCCTTTTTGTTGATCTTAAGAGG 59.768 37.037 11.53 2.78 0.00 3.69
229 230 7.371159 GTTCCTTTTTGTTGATCTTAAGAGGG 58.629 38.462 11.53 0.00 0.00 4.30
230 231 6.848069 TCCTTTTTGTTGATCTTAAGAGGGA 58.152 36.000 11.53 0.00 0.00 4.20
231 232 7.294584 TCCTTTTTGTTGATCTTAAGAGGGAA 58.705 34.615 11.53 0.79 0.00 3.97
232 233 7.448469 TCCTTTTTGTTGATCTTAAGAGGGAAG 59.552 37.037 11.53 6.32 0.00 3.46
233 234 6.575162 TTTTGTTGATCTTAAGAGGGAAGC 57.425 37.500 11.53 0.00 0.00 3.86
234 235 4.908601 TGTTGATCTTAAGAGGGAAGCA 57.091 40.909 11.53 2.24 0.00 3.91
235 236 4.579869 TGTTGATCTTAAGAGGGAAGCAC 58.420 43.478 11.53 1.87 0.00 4.40
236 237 3.526931 TGATCTTAAGAGGGAAGCACG 57.473 47.619 11.53 0.00 0.00 5.34
237 238 3.096852 TGATCTTAAGAGGGAAGCACGA 58.903 45.455 11.53 0.00 0.00 4.35
238 239 3.513912 TGATCTTAAGAGGGAAGCACGAA 59.486 43.478 11.53 0.00 0.00 3.85
239 240 3.594603 TCTTAAGAGGGAAGCACGAAG 57.405 47.619 0.00 0.00 0.00 3.79
241 242 4.084287 TCTTAAGAGGGAAGCACGAAGTA 58.916 43.478 0.00 0.00 41.61 2.24
242 243 4.710375 TCTTAAGAGGGAAGCACGAAGTAT 59.290 41.667 0.00 0.00 41.61 2.12
243 244 3.983044 AAGAGGGAAGCACGAAGTATT 57.017 42.857 0.00 0.00 41.61 1.89
244 245 6.379133 TCTTAAGAGGGAAGCACGAAGTATTA 59.621 38.462 0.00 0.00 41.61 0.98
245 246 5.615925 AAGAGGGAAGCACGAAGTATTAT 57.384 39.130 0.00 0.00 41.61 1.28
246 247 4.950050 AGAGGGAAGCACGAAGTATTATG 58.050 43.478 0.00 0.00 41.61 1.90
247 248 4.649674 AGAGGGAAGCACGAAGTATTATGA 59.350 41.667 0.00 0.00 41.61 2.15
248 249 5.128827 AGAGGGAAGCACGAAGTATTATGAA 59.871 40.000 0.00 0.00 41.61 2.57
249 250 5.360591 AGGGAAGCACGAAGTATTATGAAG 58.639 41.667 0.00 0.00 41.61 3.02
250 251 4.024809 GGGAAGCACGAAGTATTATGAAGC 60.025 45.833 0.00 0.00 41.61 3.86
251 252 4.811557 GGAAGCACGAAGTATTATGAAGCT 59.188 41.667 0.00 0.00 41.61 3.74
252 253 5.294552 GGAAGCACGAAGTATTATGAAGCTT 59.705 40.000 0.00 0.00 41.61 3.74
253 254 6.479001 GGAAGCACGAAGTATTATGAAGCTTA 59.521 38.462 0.00 0.00 41.61 3.09
254 255 6.830114 AGCACGAAGTATTATGAAGCTTAC 57.170 37.500 0.00 0.00 41.61 2.34
255 256 6.338146 AGCACGAAGTATTATGAAGCTTACA 58.662 36.000 0.00 0.00 41.61 2.41
256 257 6.816640 AGCACGAAGTATTATGAAGCTTACAA 59.183 34.615 0.00 0.00 41.61 2.41
257 258 7.333423 AGCACGAAGTATTATGAAGCTTACAAA 59.667 33.333 0.00 0.00 41.61 2.83
258 259 8.122952 GCACGAAGTATTATGAAGCTTACAAAT 58.877 33.333 0.00 1.92 41.61 2.32
271 272 9.773328 TGAAGCTTACAAATAATTTCAAGATCG 57.227 29.630 0.00 0.00 0.00 3.69
272 273 9.774742 GAAGCTTACAAATAATTTCAAGATCGT 57.225 29.630 0.00 0.00 0.00 3.73
273 274 9.774742 AAGCTTACAAATAATTTCAAGATCGTC 57.225 29.630 0.00 0.00 0.00 4.20
274 275 8.946085 AGCTTACAAATAATTTCAAGATCGTCA 58.054 29.630 0.00 0.00 0.00 4.35
275 276 9.554724 GCTTACAAATAATTTCAAGATCGTCAA 57.445 29.630 0.00 0.00 0.00 3.18
287 288 2.602257 ATCGTCAAGATCAATCGCCA 57.398 45.000 0.00 0.00 33.45 5.69
288 289 1.640428 TCGTCAAGATCAATCGCCAC 58.360 50.000 0.00 0.00 0.00 5.01
289 290 0.298707 CGTCAAGATCAATCGCCACG 59.701 55.000 0.00 0.00 0.00 4.94
290 291 0.026803 GTCAAGATCAATCGCCACGC 59.973 55.000 0.00 0.00 0.00 5.34
291 292 0.390998 TCAAGATCAATCGCCACGCA 60.391 50.000 0.00 0.00 0.00 5.24
292 293 0.447406 CAAGATCAATCGCCACGCAA 59.553 50.000 0.00 0.00 0.00 4.85
293 294 1.135717 CAAGATCAATCGCCACGCAAA 60.136 47.619 0.00 0.00 0.00 3.68
294 295 0.447801 AGATCAATCGCCACGCAAAC 59.552 50.000 0.00 0.00 0.00 2.93
295 296 0.167908 GATCAATCGCCACGCAAACA 59.832 50.000 0.00 0.00 0.00 2.83
296 297 0.810648 ATCAATCGCCACGCAAACAT 59.189 45.000 0.00 0.00 0.00 2.71
297 298 0.109827 TCAATCGCCACGCAAACATG 60.110 50.000 0.00 0.00 0.00 3.21
298 299 1.072116 CAATCGCCACGCAAACATGG 61.072 55.000 0.00 0.00 39.16 3.66
307 308 2.962089 GCAAACATGGCGGCTTATG 58.038 52.632 11.43 9.23 0.00 1.90
308 309 0.455410 GCAAACATGGCGGCTTATGA 59.545 50.000 19.35 0.00 0.00 2.15
309 310 1.534595 GCAAACATGGCGGCTTATGAG 60.535 52.381 19.35 11.88 0.00 2.90
310 311 2.016318 CAAACATGGCGGCTTATGAGA 58.984 47.619 19.35 0.00 0.00 3.27
311 312 2.620115 CAAACATGGCGGCTTATGAGAT 59.380 45.455 19.35 0.00 0.00 2.75
312 313 2.645838 ACATGGCGGCTTATGAGATT 57.354 45.000 19.35 0.70 0.00 2.40
313 314 2.224606 ACATGGCGGCTTATGAGATTG 58.775 47.619 19.35 0.00 0.00 2.67
314 315 1.068748 CATGGCGGCTTATGAGATTGC 60.069 52.381 11.43 0.00 0.00 3.56
315 316 0.819259 TGGCGGCTTATGAGATTGCC 60.819 55.000 11.43 7.77 41.76 4.52
316 317 0.819259 GGCGGCTTATGAGATTGCCA 60.819 55.000 0.00 0.00 45.13 4.92
317 318 1.024271 GCGGCTTATGAGATTGCCAA 58.976 50.000 0.00 0.00 45.13 4.52
318 319 1.002033 GCGGCTTATGAGATTGCCAAG 60.002 52.381 0.00 0.00 45.13 3.61
319 320 2.292267 CGGCTTATGAGATTGCCAAGT 58.708 47.619 0.00 0.00 45.13 3.16
320 321 2.684881 CGGCTTATGAGATTGCCAAGTT 59.315 45.455 0.00 0.00 45.13 2.66
321 322 3.129287 CGGCTTATGAGATTGCCAAGTTT 59.871 43.478 0.00 0.00 45.13 2.66
322 323 4.335315 CGGCTTATGAGATTGCCAAGTTTA 59.665 41.667 0.00 0.00 45.13 2.01
323 324 5.504665 CGGCTTATGAGATTGCCAAGTTTAG 60.505 44.000 0.00 0.00 45.13 1.85
324 325 5.358160 GGCTTATGAGATTGCCAAGTTTAGT 59.642 40.000 0.00 0.00 44.34 2.24
325 326 6.127619 GGCTTATGAGATTGCCAAGTTTAGTT 60.128 38.462 0.00 0.00 44.34 2.24
326 327 7.315890 GCTTATGAGATTGCCAAGTTTAGTTT 58.684 34.615 0.00 0.00 0.00 2.66
327 328 7.814587 GCTTATGAGATTGCCAAGTTTAGTTTT 59.185 33.333 0.00 0.00 0.00 2.43
328 329 9.132521 CTTATGAGATTGCCAAGTTTAGTTTTG 57.867 33.333 0.00 0.00 0.00 2.44
329 330 6.707440 TGAGATTGCCAAGTTTAGTTTTGA 57.293 33.333 0.00 0.00 0.00 2.69
330 331 6.503524 TGAGATTGCCAAGTTTAGTTTTGAC 58.496 36.000 0.00 0.00 0.00 3.18
331 332 6.096141 TGAGATTGCCAAGTTTAGTTTTGACA 59.904 34.615 0.00 0.00 0.00 3.58
332 333 6.872920 AGATTGCCAAGTTTAGTTTTGACAA 58.127 32.000 0.00 0.00 32.58 3.18
333 334 7.500141 AGATTGCCAAGTTTAGTTTTGACAAT 58.500 30.769 0.00 0.00 39.17 2.71
334 335 8.637986 AGATTGCCAAGTTTAGTTTTGACAATA 58.362 29.630 0.00 0.00 37.46 1.90
335 336 8.816640 ATTGCCAAGTTTAGTTTTGACAATAG 57.183 30.769 0.00 0.00 36.20 1.73
336 337 6.744112 TGCCAAGTTTAGTTTTGACAATAGG 58.256 36.000 0.00 0.00 0.00 2.57
337 338 5.633601 GCCAAGTTTAGTTTTGACAATAGGC 59.366 40.000 0.00 0.00 0.00 3.93
338 339 6.156519 CCAAGTTTAGTTTTGACAATAGGCC 58.843 40.000 0.00 0.00 0.00 5.19
339 340 5.622770 AGTTTAGTTTTGACAATAGGCCG 57.377 39.130 0.00 0.00 0.00 6.13
340 341 4.457949 AGTTTAGTTTTGACAATAGGCCGG 59.542 41.667 0.00 0.00 0.00 6.13
341 342 2.871096 AGTTTTGACAATAGGCCGGA 57.129 45.000 5.05 0.00 0.00 5.14
342 343 2.433436 AGTTTTGACAATAGGCCGGAC 58.567 47.619 5.05 0.00 0.00 4.79
343 344 2.156098 GTTTTGACAATAGGCCGGACA 58.844 47.619 11.69 0.00 0.00 4.02
344 345 2.554893 GTTTTGACAATAGGCCGGACAA 59.445 45.455 11.69 0.00 0.00 3.18
345 346 2.799126 TTGACAATAGGCCGGACAAT 57.201 45.000 11.69 0.00 0.00 2.71
346 347 2.325583 TGACAATAGGCCGGACAATC 57.674 50.000 11.69 0.00 0.00 2.67
347 348 1.837439 TGACAATAGGCCGGACAATCT 59.163 47.619 11.69 0.00 0.00 2.40
348 349 2.238646 TGACAATAGGCCGGACAATCTT 59.761 45.455 11.69 0.00 0.00 2.40
349 350 2.872858 GACAATAGGCCGGACAATCTTC 59.127 50.000 11.69 0.00 0.00 2.87
350 351 2.505819 ACAATAGGCCGGACAATCTTCT 59.494 45.455 11.69 0.00 0.00 2.85
351 352 3.054361 ACAATAGGCCGGACAATCTTCTT 60.054 43.478 11.69 0.00 0.00 2.52
352 353 3.933861 ATAGGCCGGACAATCTTCTTT 57.066 42.857 11.69 0.00 0.00 2.52
364 365 9.021863 CGGACAATCTTCTTTACTATAGTGTTC 57.978 37.037 15.90 0.00 0.00 3.18
365 366 9.315525 GGACAATCTTCTTTACTATAGTGTTCC 57.684 37.037 15.90 1.88 0.00 3.62
367 368 8.529476 ACAATCTTCTTTACTATAGTGTTCCGT 58.471 33.333 15.90 0.00 0.00 4.69
369 370 7.692460 TCTTCTTTACTATAGTGTTCCGTCA 57.308 36.000 15.90 0.00 0.00 4.35
370 371 8.289939 TCTTCTTTACTATAGTGTTCCGTCAT 57.710 34.615 15.90 0.00 0.00 3.06
372 373 7.400599 TCTTTACTATAGTGTTCCGTCATGT 57.599 36.000 15.90 0.00 0.00 3.21
413 414 9.469807 AATGAACGATTGTAAGCATGTTTTAAA 57.530 25.926 0.00 0.00 0.00 1.52
479 480 3.012518 AGCATTGTCATAGGCTCACAAC 58.987 45.455 8.33 0.00 32.96 3.32
480 481 2.749076 GCATTGTCATAGGCTCACAACA 59.251 45.455 8.33 0.00 32.96 3.33
508 510 2.094390 TCGTGTATCCAAAAGACCCTCG 60.094 50.000 0.00 0.00 0.00 4.63
557 559 4.503370 CACGCACATATAATGCATGCAAAA 59.497 37.500 26.68 16.16 43.57 2.44
558 560 5.176039 CACGCACATATAATGCATGCAAAAT 59.824 36.000 26.68 21.81 43.57 1.82
573 575 6.300434 GCATGCAAAATTGACAAAATAACACG 59.700 34.615 14.21 0.00 0.00 4.49
575 577 7.295952 TGCAAAATTGACAAAATAACACGTT 57.704 28.000 0.00 0.00 0.00 3.99
594 596 4.152526 CGTTTTTGTTCGTTCTTGACACA 58.847 39.130 0.00 0.00 0.00 3.72
598 600 3.750639 TGTTCGTTCTTGACACAAACC 57.249 42.857 0.00 0.00 0.00 3.27
602 604 2.675844 TCGTTCTTGACACAAACCACAG 59.324 45.455 0.00 0.00 0.00 3.66
609 611 5.888724 TCTTGACACAAACCACAGGATAAAA 59.111 36.000 0.00 0.00 0.00 1.52
645 647 4.864247 GTCAATTTCACCATTGTACATGGC 59.136 41.667 18.61 0.52 42.82 4.40
673 675 6.202954 GCTTAGACTTGGCGTATCAAACATAT 59.797 38.462 0.00 0.00 0.00 1.78
684 686 7.008086 GGCGTATCAAACATATCGATGTACTAC 59.992 40.741 8.54 0.43 45.93 2.73
685 687 7.749570 GCGTATCAAACATATCGATGTACTACT 59.250 37.037 8.54 0.00 45.93 2.57
690 692 9.946165 TCAAACATATCGATGTACTACTAACTG 57.054 33.333 8.54 0.00 45.93 3.16
691 693 9.731819 CAAACATATCGATGTACTACTAACTGT 57.268 33.333 8.54 0.00 45.93 3.55
692 694 9.947669 AAACATATCGATGTACTACTAACTGTC 57.052 33.333 8.54 0.00 45.93 3.51
693 695 8.905660 ACATATCGATGTACTACTAACTGTCT 57.094 34.615 8.54 0.00 44.77 3.41
731 733 6.956047 AGTCACCGAAGTTTCAAAAAGTATC 58.044 36.000 0.00 0.00 0.00 2.24
759 763 5.523188 TCACATTTTCATGTTTTGCTGAACC 59.477 36.000 0.00 0.00 41.16 3.62
760 764 4.507388 ACATTTTCATGTTTTGCTGAACCG 59.493 37.500 0.00 0.00 41.16 4.44
766 770 2.096248 TGTTTTGCTGAACCGTTTCCT 58.904 42.857 0.00 0.00 0.00 3.36
802 806 8.992835 ATATTTTGCAGAAGAAAGAAATGACC 57.007 30.769 0.00 0.00 0.00 4.02
803 807 4.853924 TTGCAGAAGAAAGAAATGACCC 57.146 40.909 0.00 0.00 0.00 4.46
804 808 3.157087 TGCAGAAGAAAGAAATGACCCC 58.843 45.455 0.00 0.00 0.00 4.95
805 809 2.493675 GCAGAAGAAAGAAATGACCCCC 59.506 50.000 0.00 0.00 0.00 5.40
829 849 1.232119 AAAAACCTAACCGACCGCAG 58.768 50.000 0.00 0.00 0.00 5.18
873 893 4.065789 GACAGGGGATATTTGGTCGATTC 58.934 47.826 0.00 0.00 0.00 2.52
887 907 0.878416 CGATTCCGAAAAACCAGCCA 59.122 50.000 0.00 0.00 38.22 4.75
895 915 2.675348 CGAAAAACCAGCCAAGCAAAAA 59.325 40.909 0.00 0.00 0.00 1.94
905 925 3.117926 AGCCAAGCAAAAACCTCCAAAAT 60.118 39.130 0.00 0.00 0.00 1.82
906 926 3.250762 GCCAAGCAAAAACCTCCAAAATC 59.749 43.478 0.00 0.00 0.00 2.17
907 927 4.707105 CCAAGCAAAAACCTCCAAAATCT 58.293 39.130 0.00 0.00 0.00 2.40
945 965 4.554036 GCACGCCAGATCCCCTCC 62.554 72.222 0.00 0.00 0.00 4.30
1167 1187 0.870307 CGGCGAGGATAAAGGTCGTG 60.870 60.000 0.00 0.00 36.09 4.35
1288 1308 1.248486 GAACTGGGGTTCCTTTCTGC 58.752 55.000 0.00 0.00 44.24 4.26
1339 1359 6.594159 TCCTAGTCTGATTTGAAATTCGAACC 59.406 38.462 0.00 0.00 0.00 3.62
1347 1367 4.419522 TTGAAATTCGAACCTAGCAAGC 57.580 40.909 0.00 0.00 0.00 4.01
1350 1370 1.927895 ATTCGAACCTAGCAAGCGAG 58.072 50.000 0.00 0.00 32.22 5.03
1361 1381 0.999406 GCAAGCGAGCGAGTTAATCA 59.001 50.000 0.00 0.00 0.00 2.57
1376 1396 1.549203 AATCAGCGGCATTGTTTCCT 58.451 45.000 1.45 0.00 0.00 3.36
1378 1398 0.881118 TCAGCGGCATTGTTTCCTTC 59.119 50.000 1.45 0.00 0.00 3.46
1384 1404 1.186200 GCATTGTTTCCTTCCTCCCC 58.814 55.000 0.00 0.00 0.00 4.81
1392 1412 0.981277 TCCTTCCTCCCCATCCGTTC 60.981 60.000 0.00 0.00 0.00 3.95
1446 1469 3.366476 GCATACGAGTCTATGTAGGCTGG 60.366 52.174 11.91 0.52 43.04 4.85
1452 1475 2.761208 AGTCTATGTAGGCTGGTGTGAC 59.239 50.000 0.00 0.42 36.79 3.67
1454 1477 1.749063 CTATGTAGGCTGGTGTGACGA 59.251 52.381 0.00 0.00 0.00 4.20
1455 1478 0.973632 ATGTAGGCTGGTGTGACGAA 59.026 50.000 0.00 0.00 0.00 3.85
1458 1481 0.391130 TAGGCTGGTGTGACGAATGC 60.391 55.000 0.00 0.00 0.00 3.56
1482 1507 7.336679 TGCTCATGTATGCTTACTACATTGTTT 59.663 33.333 10.74 0.00 37.64 2.83
1533 1561 8.137745 AGATTGAAAATTATTCCTTGCCTTCA 57.862 30.769 0.00 0.00 0.00 3.02
1544 1572 2.434428 CTTGCCTTCACAGAAGCATCT 58.566 47.619 1.29 0.00 34.72 2.90
1569 1598 9.429359 CTAGGGAAGTCTAATGCAGTATAATTG 57.571 37.037 0.00 0.00 0.00 2.32
1578 1607 9.529325 TCTAATGCAGTATAATTGTACAGTGAC 57.471 33.333 13.97 3.34 0.00 3.67
1594 1623 2.068519 GTGACGATGACTGCACATTCA 58.931 47.619 0.00 0.00 0.00 2.57
1621 1650 8.675705 TGTCTGTTTTCTCAAATACTGATGAA 57.324 30.769 0.00 0.00 32.14 2.57
1642 1672 7.894753 TGAATGCATTATACAATTTCAGGGA 57.105 32.000 12.97 0.00 0.00 4.20
1754 1784 3.908103 TGGGCTGGGTAATACTTCCTATC 59.092 47.826 0.00 0.00 0.00 2.08
1785 1815 3.199880 AGAAGGATGTCTTTATGGGCG 57.800 47.619 0.00 0.00 35.50 6.13
1791 1835 7.106261 AAGGATGTCTTTATGGGCGTTTTCG 62.106 44.000 0.00 0.00 38.28 3.46
1808 1852 1.917872 TCGCCCCTAATGCAAACTTT 58.082 45.000 0.00 0.00 0.00 2.66
1809 1853 1.543802 TCGCCCCTAATGCAAACTTTG 59.456 47.619 0.00 0.00 0.00 2.77
1810 1854 1.272212 CGCCCCTAATGCAAACTTTGT 59.728 47.619 3.48 0.00 0.00 2.83
1811 1855 2.687370 GCCCCTAATGCAAACTTTGTG 58.313 47.619 3.48 0.00 0.00 3.33
1819 1870 0.644843 GCAAACTTTGTGTTGGTGCG 59.355 50.000 3.48 0.00 39.13 5.34
1868 1919 5.525012 CAGTATACCAGATGACACATGGTTG 59.475 44.000 16.39 7.15 44.98 3.77
1870 1921 0.448990 CCAGATGACACATGGTTGCG 59.551 55.000 0.00 0.00 0.00 4.85
1885 1936 2.095415 GGTTGCGGACTGTAAATTCCAC 60.095 50.000 0.00 0.00 0.00 4.02
1888 1939 2.224426 TGCGGACTGTAAATTCCACTGT 60.224 45.455 3.33 3.33 0.00 3.55
1896 1947 7.303634 ACTGTAAATTCCACTGTAAATAGCG 57.696 36.000 2.15 0.00 0.00 4.26
1901 1952 7.510549 AAATTCCACTGTAAATAGCGCATAT 57.489 32.000 11.47 1.45 0.00 1.78
1909 1960 7.317970 CACTGTAAATAGCGCATATTGTTAACG 59.682 37.037 11.47 7.24 34.21 3.18
1917 1968 5.459107 AGCGCATATTGTTAACGAGACTAAG 59.541 40.000 11.47 0.00 0.00 2.18
1996 2048 5.679601 GAGGAATCAAAGGAAGTGATAGCT 58.320 41.667 0.00 0.00 34.60 3.32
2047 2099 0.253160 TAACAGCTGGGATGGGAGGT 60.253 55.000 19.93 0.00 0.00 3.85
2095 2147 2.425143 TTGCCCAGATAGCAAAGGAG 57.575 50.000 0.00 0.00 46.71 3.69
2140 2192 2.027192 TGTCACCTACCCATTCAGCTTC 60.027 50.000 0.00 0.00 0.00 3.86
2169 2221 2.293677 GCAAGCGCTCTCTACAGGTATA 59.706 50.000 12.06 0.00 34.30 1.47
2171 2223 4.559704 GCAAGCGCTCTCTACAGGTATATT 60.560 45.833 12.06 0.00 34.30 1.28
2176 2228 5.177696 GCGCTCTCTACAGGTATATTTTTGG 59.822 44.000 0.00 0.00 0.00 3.28
2177 2229 6.281405 CGCTCTCTACAGGTATATTTTTGGT 58.719 40.000 0.00 0.00 0.00 3.67
2178 2230 6.201044 CGCTCTCTACAGGTATATTTTTGGTG 59.799 42.308 0.00 0.00 0.00 4.17
2189 2264 2.045561 TTTTTGGTGCCTCGTTGAGA 57.954 45.000 0.00 0.00 0.00 3.27
2501 2799 3.097614 GGACCACTCCTGCTTAAGTAGA 58.902 50.000 20.79 6.60 33.07 2.59
2599 2897 5.679734 GTGTTGACACTCTGATTGTGATT 57.320 39.130 5.31 0.00 43.25 2.57
2662 2960 3.984292 GCAAGACGCATTTCTCCTG 57.016 52.632 0.00 0.00 41.79 3.86
2909 3209 7.006865 TCCATCCATTTGTGACAAATTCAAT 57.993 32.000 20.00 11.18 35.39 2.57
2927 3227 6.849085 TTCAATATGTGGTGTAAGCCAAAT 57.151 33.333 0.00 0.00 40.68 2.32
2944 3244 2.479566 AATGTGAACAGATCGGCACT 57.520 45.000 10.18 0.00 32.69 4.40
3196 3496 2.101750 TGTCGTGTACAACATCACTGGT 59.898 45.455 0.00 0.00 34.29 4.00
3325 3626 3.375299 GCCATTAGAACATCGAAACAGCT 59.625 43.478 0.00 0.00 0.00 4.24
3341 3642 2.571653 ACAGCTGGCAGTAGAACCAATA 59.428 45.455 19.93 0.00 34.96 1.90
3561 3863 3.542046 GAAGTCCCTTCTGGCTGAC 57.458 57.895 0.00 0.00 37.49 3.51
3599 3901 2.932261 ACTGGAGGCGAAAGAAAAAGT 58.068 42.857 0.00 0.00 0.00 2.66
3749 4051 3.380004 CACTTTCTCGAGGCAGTAGAGAT 59.620 47.826 13.56 0.00 40.26 2.75
3776 4078 2.929161 GCCGGTGTTATTCTTTTTGGCC 60.929 50.000 1.90 0.00 33.95 5.36
3790 4092 2.335316 TTGGCCGTGTAAACACTCTT 57.665 45.000 11.22 0.00 44.34 2.85
3802 4104 9.977762 CGTGTAAACACTCTTAAAACTAGTTTT 57.022 29.630 30.62 30.62 44.34 2.43
3820 4122 4.694037 AGTTTTGCGTAGTGATTAGGTTCC 59.306 41.667 0.00 0.00 0.00 3.62
3860 4162 1.068588 TCAGACACTTGACTCGGTTGG 59.931 52.381 0.00 0.00 0.00 3.77
3883 4186 5.963586 GGTTTAGAAAGTGTTCTGTTCGTTG 59.036 40.000 0.00 0.00 44.12 4.10
3885 4188 4.859629 AGAAAGTGTTCTGTTCGTTGAC 57.140 40.909 0.00 0.00 42.73 3.18
3904 4207 2.524148 GCTTTGGCAACCCCAGGT 60.524 61.111 0.00 0.00 46.39 4.00
3944 4249 1.806542 GGGTGTGTATGAGCTTGTGTG 59.193 52.381 0.00 0.00 0.00 3.82
3959 4264 1.196581 TGTGTGCGATTGTTGAATCCG 59.803 47.619 0.00 0.00 35.43 4.18
4055 4455 8.413229 TCTTTCAAATTTCATCCGTCTTTTCTT 58.587 29.630 0.00 0.00 0.00 2.52
4064 4464 6.292923 TCATCCGTCTTTTCTTGTAAGGAAA 58.707 36.000 0.00 0.00 32.72 3.13
4123 4711 3.198409 TGATCCAGTGTCATATGGTGC 57.802 47.619 2.13 0.00 37.84 5.01
4132 4720 2.028484 ATATGGTGCGCGTACCCG 59.972 61.111 37.87 0.00 40.09 5.28
4172 4760 8.845413 TTGCCAAAATAGAAATGCTAAAATGT 57.155 26.923 0.00 0.00 31.66 2.71
4202 4792 7.489435 CGACATACATGAGATTTGTCAAGTAGT 59.511 37.037 0.00 0.00 34.92 2.73
4203 4793 9.803315 GACATACATGAGATTTGTCAAGTAGTA 57.197 33.333 0.00 0.00 34.92 1.82
4204 4794 9.809096 ACATACATGAGATTTGTCAAGTAGTAG 57.191 33.333 0.00 0.00 34.92 2.57
4208 4798 8.753133 ACATGAGATTTGTCAAGTAGTAGATCA 58.247 33.333 0.00 0.00 0.00 2.92
4209 4799 9.591792 CATGAGATTTGTCAAGTAGTAGATCAA 57.408 33.333 0.00 0.00 0.00 2.57
4210 4800 9.814899 ATGAGATTTGTCAAGTAGTAGATCAAG 57.185 33.333 0.00 0.00 0.00 3.02
4211 4801 9.025041 TGAGATTTGTCAAGTAGTAGATCAAGA 57.975 33.333 0.00 0.00 0.00 3.02
4254 4844 2.936919 ATACATCCGTCCATGCATGT 57.063 45.000 24.58 8.20 33.95 3.21
4339 4931 4.166144 AGGGGGTTTTGTCGATGAGAATAT 59.834 41.667 0.00 0.00 0.00 1.28
4350 4942 5.406477 GTCGATGAGAATATATGCAGCACAA 59.594 40.000 0.00 0.00 0.00 3.33
4374 4966 1.021968 ACAACACCGGACAAGAAAGC 58.978 50.000 9.46 0.00 0.00 3.51
4393 4991 1.545759 CATCTCGTATTGCGTCGTGT 58.454 50.000 0.00 0.00 42.13 4.49
4394 4992 2.711885 CATCTCGTATTGCGTCGTGTA 58.288 47.619 0.00 0.00 42.13 2.90
4401 5011 0.796312 ATTGCGTCGTGTAGCCTTTG 59.204 50.000 0.00 0.00 0.00 2.77
4402 5012 1.225376 TTGCGTCGTGTAGCCTTTGG 61.225 55.000 0.00 0.00 0.00 3.28
4404 5014 0.388907 GCGTCGTGTAGCCTTTGGTA 60.389 55.000 0.00 0.00 0.00 3.25
4405 5015 1.625616 CGTCGTGTAGCCTTTGGTAG 58.374 55.000 0.00 0.00 0.00 3.18
4407 5017 2.162208 CGTCGTGTAGCCTTTGGTAGTA 59.838 50.000 0.00 0.00 0.00 1.82
4507 5149 2.430610 GCGGAGTGGAGGCTCTCAT 61.431 63.158 15.23 0.00 35.89 2.90
4513 5155 0.620556 GTGGAGGCTCTCATTTCCCA 59.379 55.000 15.23 0.00 31.08 4.37
4517 5159 1.836802 GAGGCTCTCATTTCCCAGAGT 59.163 52.381 7.40 0.00 38.78 3.24
4536 5178 2.159043 AGTGATTAGTCCCACATCGCTG 60.159 50.000 0.00 0.00 36.60 5.18
4538 5180 0.833287 ATTAGTCCCACATCGCTGCT 59.167 50.000 0.00 0.00 0.00 4.24
4539 5181 0.175760 TTAGTCCCACATCGCTGCTC 59.824 55.000 0.00 0.00 0.00 4.26
4540 5182 2.004808 TAGTCCCACATCGCTGCTCG 62.005 60.000 0.00 0.00 40.15 5.03
4543 5185 2.584418 CCACATCGCTGCTCGGAG 60.584 66.667 0.00 0.00 39.05 4.63
4544 5186 2.182791 CACATCGCTGCTCGGAGT 59.817 61.111 6.90 0.00 39.05 3.85
4545 5187 1.875813 CACATCGCTGCTCGGAGTC 60.876 63.158 6.90 0.00 39.05 3.36
4546 5188 2.653448 CATCGCTGCTCGGAGTCG 60.653 66.667 6.90 8.25 39.05 4.18
4547 5189 4.560856 ATCGCTGCTCGGAGTCGC 62.561 66.667 6.90 8.50 39.05 5.19
4554 5196 3.877357 CTCGGAGTCGCAGCGCTA 61.877 66.667 10.99 0.00 36.13 4.26
4555 5197 4.175489 TCGGAGTCGCAGCGCTAC 62.175 66.667 10.99 10.62 36.13 3.58
4573 5217 4.560716 CGCTACCAGGCAGCAGTATATAAA 60.561 45.833 12.50 0.00 39.04 1.40
4582 5226 4.319177 CAGCAGTATATAAAGAGGGCCAC 58.681 47.826 6.18 0.00 0.00 5.01
4594 5238 2.361104 GGCCACGGCTTCCATTCA 60.361 61.111 8.20 0.00 41.60 2.57
4597 5241 0.109132 GCCACGGCTTCCATTCAAAG 60.109 55.000 0.00 0.00 38.26 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.375455 GCAATCCCAAGAAGAAAGAATGACTA 59.625 38.462 0.00 0.00 0.00 2.59
1 2 5.184671 GCAATCCCAAGAAGAAAGAATGACT 59.815 40.000 0.00 0.00 0.00 3.41
2 3 5.405797 GCAATCCCAAGAAGAAAGAATGAC 58.594 41.667 0.00 0.00 0.00 3.06
3 4 4.463891 GGCAATCCCAAGAAGAAAGAATGA 59.536 41.667 0.00 0.00 0.00 2.57
4 5 4.221262 TGGCAATCCCAAGAAGAAAGAATG 59.779 41.667 0.00 0.00 41.82 2.67
5 6 4.419282 TGGCAATCCCAAGAAGAAAGAAT 58.581 39.130 0.00 0.00 41.82 2.40
6 7 3.843422 TGGCAATCCCAAGAAGAAAGAA 58.157 40.909 0.00 0.00 41.82 2.52
7 8 3.524095 TGGCAATCCCAAGAAGAAAGA 57.476 42.857 0.00 0.00 41.82 2.52
17 18 3.266772 AGAATGACTACTTGGCAATCCCA 59.733 43.478 0.00 0.00 43.51 4.37
18 19 3.891049 AGAATGACTACTTGGCAATCCC 58.109 45.455 0.00 0.00 37.17 3.85
19 20 5.649831 AGAAAGAATGACTACTTGGCAATCC 59.350 40.000 0.00 0.00 37.17 3.01
20 21 6.749923 AGAAAGAATGACTACTTGGCAATC 57.250 37.500 0.00 0.00 37.17 2.67
21 22 6.944862 AGAAGAAAGAATGACTACTTGGCAAT 59.055 34.615 0.00 0.00 37.17 3.56
22 23 6.299141 AGAAGAAAGAATGACTACTTGGCAA 58.701 36.000 0.00 0.00 37.17 4.52
23 24 5.869579 AGAAGAAAGAATGACTACTTGGCA 58.130 37.500 0.00 0.00 38.56 4.92
24 25 6.348868 CCAAGAAGAAAGAATGACTACTTGGC 60.349 42.308 0.00 0.00 42.89 4.52
25 26 6.150140 CCCAAGAAGAAAGAATGACTACTTGG 59.850 42.308 0.15 0.15 46.18 3.61
26 27 6.936900 TCCCAAGAAGAAAGAATGACTACTTG 59.063 38.462 0.00 0.00 34.15 3.16
27 28 7.079451 TCCCAAGAAGAAAGAATGACTACTT 57.921 36.000 0.00 0.00 0.00 2.24
28 29 6.688073 TCCCAAGAAGAAAGAATGACTACT 57.312 37.500 0.00 0.00 0.00 2.57
29 30 7.929941 AATCCCAAGAAGAAAGAATGACTAC 57.070 36.000 0.00 0.00 0.00 2.73
30 31 8.940397 AAAATCCCAAGAAGAAAGAATGACTA 57.060 30.769 0.00 0.00 0.00 2.59
31 32 7.846101 AAAATCCCAAGAAGAAAGAATGACT 57.154 32.000 0.00 0.00 0.00 3.41
34 35 9.374838 CCAATAAAATCCCAAGAAGAAAGAATG 57.625 33.333 0.00 0.00 0.00 2.67
35 36 8.542926 CCCAATAAAATCCCAAGAAGAAAGAAT 58.457 33.333 0.00 0.00 0.00 2.40
36 37 7.512402 ACCCAATAAAATCCCAAGAAGAAAGAA 59.488 33.333 0.00 0.00 0.00 2.52
37 38 7.016296 ACCCAATAAAATCCCAAGAAGAAAGA 58.984 34.615 0.00 0.00 0.00 2.52
38 39 7.244886 ACCCAATAAAATCCCAAGAAGAAAG 57.755 36.000 0.00 0.00 0.00 2.62
39 40 6.071616 CGACCCAATAAAATCCCAAGAAGAAA 60.072 38.462 0.00 0.00 0.00 2.52
40 41 5.417580 CGACCCAATAAAATCCCAAGAAGAA 59.582 40.000 0.00 0.00 0.00 2.52
41 42 4.947388 CGACCCAATAAAATCCCAAGAAGA 59.053 41.667 0.00 0.00 0.00 2.87
42 43 4.705023 ACGACCCAATAAAATCCCAAGAAG 59.295 41.667 0.00 0.00 0.00 2.85
43 44 4.461081 CACGACCCAATAAAATCCCAAGAA 59.539 41.667 0.00 0.00 0.00 2.52
44 45 4.013728 CACGACCCAATAAAATCCCAAGA 58.986 43.478 0.00 0.00 0.00 3.02
45 46 3.428862 GCACGACCCAATAAAATCCCAAG 60.429 47.826 0.00 0.00 0.00 3.61
46 47 2.494073 GCACGACCCAATAAAATCCCAA 59.506 45.455 0.00 0.00 0.00 4.12
47 48 2.096248 GCACGACCCAATAAAATCCCA 58.904 47.619 0.00 0.00 0.00 4.37
48 49 2.096248 TGCACGACCCAATAAAATCCC 58.904 47.619 0.00 0.00 0.00 3.85
49 50 2.477189 CGTGCACGACCCAATAAAATCC 60.477 50.000 34.93 0.00 43.02 3.01
50 51 2.160813 ACGTGCACGACCCAATAAAATC 59.839 45.455 42.94 0.00 43.02 2.17
51 52 2.095466 CACGTGCACGACCCAATAAAAT 60.095 45.455 42.94 15.44 43.02 1.82
52 53 1.264557 CACGTGCACGACCCAATAAAA 59.735 47.619 42.94 0.00 43.02 1.52
53 54 0.869068 CACGTGCACGACCCAATAAA 59.131 50.000 42.94 0.00 43.02 1.40
54 55 0.249953 ACACGTGCACGACCCAATAA 60.250 50.000 42.94 0.00 43.02 1.40
55 56 0.946700 CACACGTGCACGACCCAATA 60.947 55.000 42.94 0.00 43.02 1.90
56 57 2.110213 ACACGTGCACGACCCAAT 59.890 55.556 42.94 19.18 43.02 3.16
57 58 2.892914 CACACGTGCACGACCCAA 60.893 61.111 42.94 0.00 43.02 4.12
58 59 3.667326 AACACACGTGCACGACCCA 62.667 57.895 42.94 0.00 43.02 4.51
59 60 2.893404 AACACACGTGCACGACCC 60.893 61.111 42.94 3.23 43.02 4.46
60 61 1.495584 ATCAACACACGTGCACGACC 61.496 55.000 42.94 3.68 43.02 4.79
61 62 0.383002 CATCAACACACGTGCACGAC 60.383 55.000 42.94 4.12 43.02 4.34
62 63 0.528684 TCATCAACACACGTGCACGA 60.529 50.000 42.94 21.20 43.02 4.35
63 64 0.303191 TTCATCAACACACGTGCACG 59.697 50.000 35.99 35.99 46.33 5.34
64 65 1.921573 GCTTCATCAACACACGTGCAC 60.922 52.381 17.22 6.82 0.00 4.57
65 66 0.307453 GCTTCATCAACACACGTGCA 59.693 50.000 17.22 0.00 0.00 4.57
66 67 0.722469 CGCTTCATCAACACACGTGC 60.722 55.000 17.22 0.00 0.00 5.34
67 68 0.110688 CCGCTTCATCAACACACGTG 60.111 55.000 15.48 15.48 0.00 4.49
68 69 0.249699 TCCGCTTCATCAACACACGT 60.250 50.000 0.00 0.00 0.00 4.49
69 70 0.439985 CTCCGCTTCATCAACACACG 59.560 55.000 0.00 0.00 0.00 4.49
70 71 1.795768 TCTCCGCTTCATCAACACAC 58.204 50.000 0.00 0.00 0.00 3.82
71 72 2.768253 ATCTCCGCTTCATCAACACA 57.232 45.000 0.00 0.00 0.00 3.72
72 73 2.029728 CGAATCTCCGCTTCATCAACAC 59.970 50.000 0.00 0.00 0.00 3.32
73 74 2.270923 CGAATCTCCGCTTCATCAACA 58.729 47.619 0.00 0.00 0.00 3.33
84 85 3.554692 GGCACGTGCGAATCTCCG 61.555 66.667 32.35 0.00 43.26 4.63
85 86 1.741770 AAGGCACGTGCGAATCTCC 60.742 57.895 32.35 17.57 43.26 3.71
86 87 1.421485 CAAGGCACGTGCGAATCTC 59.579 57.895 32.35 18.29 43.26 2.75
87 88 3.566261 CAAGGCACGTGCGAATCT 58.434 55.556 32.35 21.35 43.26 2.40
100 101 1.097547 CAACATAGAGCCCGGCAAGG 61.098 60.000 13.15 0.67 40.63 3.61
101 102 1.097547 CCAACATAGAGCCCGGCAAG 61.098 60.000 13.15 0.00 0.00 4.01
102 103 1.077787 CCAACATAGAGCCCGGCAA 60.078 57.895 13.15 0.00 0.00 4.52
103 104 0.978667 TACCAACATAGAGCCCGGCA 60.979 55.000 13.15 0.00 0.00 5.69
104 105 0.532196 GTACCAACATAGAGCCCGGC 60.532 60.000 0.00 0.00 0.00 6.13
105 106 1.120530 AGTACCAACATAGAGCCCGG 58.879 55.000 0.00 0.00 0.00 5.73
106 107 2.957006 ACTAGTACCAACATAGAGCCCG 59.043 50.000 0.00 0.00 0.00 6.13
107 108 4.216708 AGACTAGTACCAACATAGAGCCC 58.783 47.826 0.00 0.00 0.00 5.19
108 109 4.888239 TGAGACTAGTACCAACATAGAGCC 59.112 45.833 0.00 0.00 0.00 4.70
109 110 6.452494 TTGAGACTAGTACCAACATAGAGC 57.548 41.667 0.00 0.00 0.00 4.09
112 113 9.530633 GGTTTATTGAGACTAGTACCAACATAG 57.469 37.037 10.49 0.00 0.00 2.23
113 114 8.480501 GGGTTTATTGAGACTAGTACCAACATA 58.519 37.037 10.49 0.73 0.00 2.29
114 115 7.037873 TGGGTTTATTGAGACTAGTACCAACAT 60.038 37.037 10.49 1.49 0.00 2.71
115 116 6.270463 TGGGTTTATTGAGACTAGTACCAACA 59.730 38.462 10.49 0.00 0.00 3.33
116 117 6.704310 TGGGTTTATTGAGACTAGTACCAAC 58.296 40.000 10.49 1.45 0.00 3.77
117 118 6.938698 TGGGTTTATTGAGACTAGTACCAA 57.061 37.500 10.64 10.64 0.00 3.67
118 119 7.504926 AATGGGTTTATTGAGACTAGTACCA 57.495 36.000 8.95 1.77 0.00 3.25
119 120 8.803397 AAAATGGGTTTATTGAGACTAGTACC 57.197 34.615 0.00 0.00 0.00 3.34
136 137 9.289782 GCTATCAGATTCTACAATAAAATGGGT 57.710 33.333 0.00 0.00 0.00 4.51
137 138 9.512588 AGCTATCAGATTCTACAATAAAATGGG 57.487 33.333 0.00 0.00 0.00 4.00
145 146 9.107177 CACAAAAGAGCTATCAGATTCTACAAT 57.893 33.333 0.00 0.00 0.00 2.71
146 147 7.550551 CCACAAAAGAGCTATCAGATTCTACAA 59.449 37.037 0.00 0.00 0.00 2.41
147 148 7.044181 CCACAAAAGAGCTATCAGATTCTACA 58.956 38.462 0.00 0.00 0.00 2.74
148 149 7.044798 ACCACAAAAGAGCTATCAGATTCTAC 58.955 38.462 0.00 0.00 0.00 2.59
149 150 7.187824 ACCACAAAAGAGCTATCAGATTCTA 57.812 36.000 0.00 0.00 0.00 2.10
150 151 6.059787 ACCACAAAAGAGCTATCAGATTCT 57.940 37.500 0.00 0.00 0.00 2.40
151 152 6.183360 GGAACCACAAAAGAGCTATCAGATTC 60.183 42.308 0.00 0.00 0.00 2.52
152 153 5.649831 GGAACCACAAAAGAGCTATCAGATT 59.350 40.000 0.00 0.00 0.00 2.40
153 154 5.189180 GGAACCACAAAAGAGCTATCAGAT 58.811 41.667 0.00 0.00 0.00 2.90
154 155 4.579869 GGAACCACAAAAGAGCTATCAGA 58.420 43.478 0.00 0.00 0.00 3.27
155 156 4.954092 GGAACCACAAAAGAGCTATCAG 57.046 45.455 0.00 0.00 0.00 2.90
170 171 8.596560 CAAAATCATTTGCAAGAAAGGGAACCA 61.597 37.037 0.00 0.00 45.51 3.67
171 172 6.293571 CAAAATCATTTGCAAGAAAGGGAACC 60.294 38.462 0.00 0.00 44.24 3.62
172 173 6.661669 CAAAATCATTTGCAAGAAAGGGAAC 58.338 36.000 0.00 0.00 39.50 3.62
173 174 6.864360 CAAAATCATTTGCAAGAAAGGGAA 57.136 33.333 0.00 0.00 39.50 3.97
186 187 6.484364 AGGAACCTGTCAACAAAATCATTT 57.516 33.333 0.00 0.00 0.00 2.32
187 188 6.484364 AAGGAACCTGTCAACAAAATCATT 57.516 33.333 0.00 0.00 0.00 2.57
188 189 6.484364 AAAGGAACCTGTCAACAAAATCAT 57.516 33.333 0.00 0.00 0.00 2.45
189 190 5.930837 AAAGGAACCTGTCAACAAAATCA 57.069 34.783 0.00 0.00 0.00 2.57
190 191 6.593770 ACAAAAAGGAACCTGTCAACAAAATC 59.406 34.615 0.00 0.00 0.00 2.17
191 192 6.472016 ACAAAAAGGAACCTGTCAACAAAAT 58.528 32.000 0.00 0.00 0.00 1.82
192 193 5.859495 ACAAAAAGGAACCTGTCAACAAAA 58.141 33.333 0.00 0.00 0.00 2.44
193 194 5.476091 ACAAAAAGGAACCTGTCAACAAA 57.524 34.783 0.00 0.00 0.00 2.83
194 195 5.011125 TCAACAAAAAGGAACCTGTCAACAA 59.989 36.000 0.00 0.00 0.00 2.83
195 196 4.524714 TCAACAAAAAGGAACCTGTCAACA 59.475 37.500 0.00 0.00 0.00 3.33
196 197 5.066968 TCAACAAAAAGGAACCTGTCAAC 57.933 39.130 0.00 0.00 0.00 3.18
197 198 5.656416 AGATCAACAAAAAGGAACCTGTCAA 59.344 36.000 0.00 0.00 0.00 3.18
198 199 5.200483 AGATCAACAAAAAGGAACCTGTCA 58.800 37.500 0.00 0.00 0.00 3.58
199 200 5.774498 AGATCAACAAAAAGGAACCTGTC 57.226 39.130 0.00 0.00 0.00 3.51
200 201 7.559897 TCTTAAGATCAACAAAAAGGAACCTGT 59.440 33.333 0.00 0.00 0.00 4.00
201 202 7.940850 TCTTAAGATCAACAAAAAGGAACCTG 58.059 34.615 0.00 0.00 0.00 4.00
202 203 7.231519 CCTCTTAAGATCAACAAAAAGGAACCT 59.768 37.037 5.44 0.00 0.00 3.50
203 204 7.371159 CCTCTTAAGATCAACAAAAAGGAACC 58.629 38.462 5.44 0.00 0.00 3.62
204 205 7.230712 TCCCTCTTAAGATCAACAAAAAGGAAC 59.769 37.037 5.44 0.00 0.00 3.62
205 206 7.294584 TCCCTCTTAAGATCAACAAAAAGGAA 58.705 34.615 5.44 0.00 0.00 3.36
206 207 6.848069 TCCCTCTTAAGATCAACAAAAAGGA 58.152 36.000 5.44 0.00 0.00 3.36
207 208 7.524717 TTCCCTCTTAAGATCAACAAAAAGG 57.475 36.000 5.44 0.00 0.00 3.11
208 209 7.087007 GCTTCCCTCTTAAGATCAACAAAAAG 58.913 38.462 5.44 3.58 0.00 2.27
209 210 6.549364 TGCTTCCCTCTTAAGATCAACAAAAA 59.451 34.615 5.44 0.00 0.00 1.94
210 211 6.016276 GTGCTTCCCTCTTAAGATCAACAAAA 60.016 38.462 5.44 0.00 0.00 2.44
211 212 5.473504 GTGCTTCCCTCTTAAGATCAACAAA 59.526 40.000 5.44 0.00 0.00 2.83
212 213 5.003804 GTGCTTCCCTCTTAAGATCAACAA 58.996 41.667 5.44 0.00 0.00 2.83
213 214 4.579869 GTGCTTCCCTCTTAAGATCAACA 58.420 43.478 5.44 0.00 0.00 3.33
214 215 3.619038 CGTGCTTCCCTCTTAAGATCAAC 59.381 47.826 5.44 0.00 0.00 3.18
215 216 3.513912 TCGTGCTTCCCTCTTAAGATCAA 59.486 43.478 5.44 0.00 0.00 2.57
216 217 3.096852 TCGTGCTTCCCTCTTAAGATCA 58.903 45.455 5.44 0.00 0.00 2.92
217 218 3.802948 TCGTGCTTCCCTCTTAAGATC 57.197 47.619 5.44 0.00 0.00 2.75
218 219 3.515901 ACTTCGTGCTTCCCTCTTAAGAT 59.484 43.478 5.44 0.00 0.00 2.40
219 220 2.897969 ACTTCGTGCTTCCCTCTTAAGA 59.102 45.455 4.81 4.81 0.00 2.10
220 221 3.320673 ACTTCGTGCTTCCCTCTTAAG 57.679 47.619 0.00 0.00 0.00 1.85
221 222 5.416271 AATACTTCGTGCTTCCCTCTTAA 57.584 39.130 0.00 0.00 0.00 1.85
222 223 6.322969 TCATAATACTTCGTGCTTCCCTCTTA 59.677 38.462 0.00 0.00 0.00 2.10
223 224 3.983044 AATACTTCGTGCTTCCCTCTT 57.017 42.857 0.00 0.00 0.00 2.85
224 225 4.649674 TCATAATACTTCGTGCTTCCCTCT 59.350 41.667 0.00 0.00 0.00 3.69
225 226 4.945246 TCATAATACTTCGTGCTTCCCTC 58.055 43.478 0.00 0.00 0.00 4.30
226 227 5.353394 TTCATAATACTTCGTGCTTCCCT 57.647 39.130 0.00 0.00 0.00 4.20
227 228 4.024809 GCTTCATAATACTTCGTGCTTCCC 60.025 45.833 0.00 0.00 0.00 3.97
228 229 4.811557 AGCTTCATAATACTTCGTGCTTCC 59.188 41.667 0.00 0.00 0.00 3.46
229 230 5.975410 AGCTTCATAATACTTCGTGCTTC 57.025 39.130 0.00 0.00 0.00 3.86
230 231 6.816640 TGTAAGCTTCATAATACTTCGTGCTT 59.183 34.615 0.00 0.00 40.59 3.91
231 232 6.338146 TGTAAGCTTCATAATACTTCGTGCT 58.662 36.000 0.00 0.00 0.00 4.40
232 233 6.583912 TGTAAGCTTCATAATACTTCGTGC 57.416 37.500 0.00 0.00 0.00 5.34
245 246 9.773328 CGATCTTGAAATTATTTGTAAGCTTCA 57.227 29.630 0.00 0.00 0.00 3.02
246 247 9.774742 ACGATCTTGAAATTATTTGTAAGCTTC 57.225 29.630 0.00 0.00 0.00 3.86
247 248 9.774742 GACGATCTTGAAATTATTTGTAAGCTT 57.225 29.630 3.48 3.48 0.00 3.74
248 249 8.946085 TGACGATCTTGAAATTATTTGTAAGCT 58.054 29.630 0.00 0.00 0.00 3.74
249 250 9.554724 TTGACGATCTTGAAATTATTTGTAAGC 57.445 29.630 0.00 0.00 0.00 3.09
253 254 9.994432 GATCTTGACGATCTTGAAATTATTTGT 57.006 29.630 0.00 0.00 44.21 2.83
268 269 2.205074 GTGGCGATTGATCTTGACGAT 58.795 47.619 0.00 0.00 34.25 3.73
269 270 1.640428 GTGGCGATTGATCTTGACGA 58.360 50.000 0.00 0.00 0.00 4.20
270 271 0.298707 CGTGGCGATTGATCTTGACG 59.701 55.000 0.00 0.00 0.00 4.35
271 272 0.026803 GCGTGGCGATTGATCTTGAC 59.973 55.000 0.00 0.00 0.00 3.18
272 273 0.390998 TGCGTGGCGATTGATCTTGA 60.391 50.000 0.00 0.00 0.00 3.02
273 274 0.447406 TTGCGTGGCGATTGATCTTG 59.553 50.000 0.00 0.00 0.00 3.02
274 275 1.135689 GTTTGCGTGGCGATTGATCTT 60.136 47.619 0.00 0.00 0.00 2.40
275 276 0.447801 GTTTGCGTGGCGATTGATCT 59.552 50.000 0.00 0.00 0.00 2.75
276 277 0.167908 TGTTTGCGTGGCGATTGATC 59.832 50.000 0.00 0.00 0.00 2.92
277 278 0.810648 ATGTTTGCGTGGCGATTGAT 59.189 45.000 0.00 0.00 0.00 2.57
278 279 0.109827 CATGTTTGCGTGGCGATTGA 60.110 50.000 0.00 0.00 0.00 2.57
279 280 1.072116 CCATGTTTGCGTGGCGATTG 61.072 55.000 0.00 0.00 43.98 2.67
280 281 1.212490 CCATGTTTGCGTGGCGATT 59.788 52.632 0.00 0.00 43.98 3.34
281 282 2.876955 CCATGTTTGCGTGGCGAT 59.123 55.556 0.00 0.00 43.98 4.58
289 290 0.455410 TCATAAGCCGCCATGTTTGC 59.545 50.000 0.00 0.00 0.00 3.68
290 291 2.016318 TCTCATAAGCCGCCATGTTTG 58.984 47.619 0.00 0.00 0.00 2.93
291 292 2.418368 TCTCATAAGCCGCCATGTTT 57.582 45.000 0.00 0.00 0.00 2.83
292 293 2.620115 CAATCTCATAAGCCGCCATGTT 59.380 45.455 0.00 0.00 0.00 2.71
293 294 2.224606 CAATCTCATAAGCCGCCATGT 58.775 47.619 0.00 0.00 0.00 3.21
294 295 1.068748 GCAATCTCATAAGCCGCCATG 60.069 52.381 0.00 0.00 0.00 3.66
295 296 1.242076 GCAATCTCATAAGCCGCCAT 58.758 50.000 0.00 0.00 0.00 4.40
296 297 0.819259 GGCAATCTCATAAGCCGCCA 60.819 55.000 0.00 0.00 37.41 5.69
297 298 1.952263 GGCAATCTCATAAGCCGCC 59.048 57.895 0.00 0.00 37.41 6.13
301 302 6.442513 ACTAAACTTGGCAATCTCATAAGC 57.557 37.500 0.00 0.00 0.00 3.09
302 303 9.132521 CAAAACTAAACTTGGCAATCTCATAAG 57.867 33.333 0.00 0.00 0.00 1.73
303 304 8.855110 TCAAAACTAAACTTGGCAATCTCATAA 58.145 29.630 0.00 0.00 0.00 1.90
304 305 8.296713 GTCAAAACTAAACTTGGCAATCTCATA 58.703 33.333 0.00 0.00 0.00 2.15
305 306 7.147976 GTCAAAACTAAACTTGGCAATCTCAT 58.852 34.615 0.00 0.00 0.00 2.90
306 307 6.096141 TGTCAAAACTAAACTTGGCAATCTCA 59.904 34.615 0.00 0.00 34.37 3.27
307 308 6.503524 TGTCAAAACTAAACTTGGCAATCTC 58.496 36.000 0.00 0.00 34.37 2.75
308 309 6.463995 TGTCAAAACTAAACTTGGCAATCT 57.536 33.333 0.00 0.00 34.37 2.40
312 313 6.737346 GCCTATTGTCAAAACTAAACTTGGCA 60.737 38.462 0.00 0.00 35.44 4.92
313 314 5.633601 GCCTATTGTCAAAACTAAACTTGGC 59.366 40.000 0.00 0.00 0.00 4.52
314 315 6.156519 GGCCTATTGTCAAAACTAAACTTGG 58.843 40.000 0.00 0.00 0.00 3.61
315 316 5.856455 CGGCCTATTGTCAAAACTAAACTTG 59.144 40.000 0.00 0.00 0.00 3.16
316 317 5.048294 CCGGCCTATTGTCAAAACTAAACTT 60.048 40.000 0.00 0.00 0.00 2.66
317 318 4.457949 CCGGCCTATTGTCAAAACTAAACT 59.542 41.667 0.00 0.00 0.00 2.66
318 319 4.456566 TCCGGCCTATTGTCAAAACTAAAC 59.543 41.667 0.00 0.00 0.00 2.01
319 320 4.456566 GTCCGGCCTATTGTCAAAACTAAA 59.543 41.667 0.00 0.00 0.00 1.85
320 321 4.004982 GTCCGGCCTATTGTCAAAACTAA 58.995 43.478 0.00 0.00 0.00 2.24
321 322 3.008157 TGTCCGGCCTATTGTCAAAACTA 59.992 43.478 0.00 0.00 0.00 2.24
322 323 2.224670 TGTCCGGCCTATTGTCAAAACT 60.225 45.455 0.00 0.00 0.00 2.66
323 324 2.156098 TGTCCGGCCTATTGTCAAAAC 58.844 47.619 0.00 0.00 0.00 2.43
324 325 2.570415 TGTCCGGCCTATTGTCAAAA 57.430 45.000 0.00 0.00 0.00 2.44
325 326 2.570415 TTGTCCGGCCTATTGTCAAA 57.430 45.000 0.00 0.00 0.00 2.69
326 327 2.238646 AGATTGTCCGGCCTATTGTCAA 59.761 45.455 0.00 0.00 0.00 3.18
327 328 1.837439 AGATTGTCCGGCCTATTGTCA 59.163 47.619 0.00 0.00 0.00 3.58
328 329 2.622064 AGATTGTCCGGCCTATTGTC 57.378 50.000 0.00 0.00 0.00 3.18
329 330 2.505819 AGAAGATTGTCCGGCCTATTGT 59.494 45.455 0.00 0.00 0.00 2.71
330 331 3.199880 AGAAGATTGTCCGGCCTATTG 57.800 47.619 0.00 0.00 0.00 1.90
331 332 3.933861 AAGAAGATTGTCCGGCCTATT 57.066 42.857 0.00 0.00 0.00 1.73
332 333 3.933861 AAAGAAGATTGTCCGGCCTAT 57.066 42.857 0.00 0.00 0.00 2.57
333 334 3.773119 AGTAAAGAAGATTGTCCGGCCTA 59.227 43.478 0.00 0.00 0.00 3.93
334 335 2.572104 AGTAAAGAAGATTGTCCGGCCT 59.428 45.455 0.00 0.00 0.00 5.19
335 336 2.987232 AGTAAAGAAGATTGTCCGGCC 58.013 47.619 0.00 0.00 0.00 6.13
336 337 6.421202 CACTATAGTAAAGAAGATTGTCCGGC 59.579 42.308 4.74 0.00 0.00 6.13
337 338 7.490000 ACACTATAGTAAAGAAGATTGTCCGG 58.510 38.462 4.74 0.00 0.00 5.14
338 339 8.928270 AACACTATAGTAAAGAAGATTGTCCG 57.072 34.615 4.74 0.00 0.00 4.79
339 340 9.315525 GGAACACTATAGTAAAGAAGATTGTCC 57.684 37.037 4.74 0.00 0.00 4.02
340 341 9.021863 CGGAACACTATAGTAAAGAAGATTGTC 57.978 37.037 4.74 0.00 0.00 3.18
341 342 8.529476 ACGGAACACTATAGTAAAGAAGATTGT 58.471 33.333 4.74 0.00 0.00 2.71
342 343 8.928270 ACGGAACACTATAGTAAAGAAGATTG 57.072 34.615 4.74 0.00 0.00 2.67
343 344 8.746530 TGACGGAACACTATAGTAAAGAAGATT 58.253 33.333 4.74 0.00 0.00 2.40
344 345 8.289939 TGACGGAACACTATAGTAAAGAAGAT 57.710 34.615 4.74 0.00 0.00 2.40
345 346 7.692460 TGACGGAACACTATAGTAAAGAAGA 57.308 36.000 4.74 0.00 0.00 2.87
346 347 7.974501 ACATGACGGAACACTATAGTAAAGAAG 59.025 37.037 4.74 0.00 0.00 2.85
347 348 7.758076 CACATGACGGAACACTATAGTAAAGAA 59.242 37.037 4.74 0.00 0.00 2.52
348 349 7.094075 ACACATGACGGAACACTATAGTAAAGA 60.094 37.037 4.74 0.00 0.00 2.52
349 350 7.009265 CACACATGACGGAACACTATAGTAAAG 59.991 40.741 4.74 0.00 0.00 1.85
350 351 6.809689 CACACATGACGGAACACTATAGTAAA 59.190 38.462 4.74 0.00 0.00 2.01
351 352 6.327154 CACACATGACGGAACACTATAGTAA 58.673 40.000 4.74 0.00 0.00 2.24
352 353 5.163591 CCACACATGACGGAACACTATAGTA 60.164 44.000 4.74 0.00 0.00 1.82
364 365 0.650512 GAATACGCCACACATGACGG 59.349 55.000 0.00 0.00 0.00 4.79
365 366 1.324435 CAGAATACGCCACACATGACG 59.676 52.381 0.00 0.00 0.00 4.35
367 368 2.760634 ACAGAATACGCCACACATGA 57.239 45.000 0.00 0.00 0.00 3.07
369 370 4.765273 TCATTACAGAATACGCCACACAT 58.235 39.130 0.00 0.00 0.00 3.21
370 371 4.195225 TCATTACAGAATACGCCACACA 57.805 40.909 0.00 0.00 0.00 3.72
372 373 3.615056 CGTTCATTACAGAATACGCCACA 59.385 43.478 0.00 0.00 0.00 4.17
385 386 8.447787 AAAACATGCTTACAATCGTTCATTAC 57.552 30.769 0.00 0.00 0.00 1.89
442 443 7.432869 TGACAATGCTTATGTTGCTACTTTTT 58.567 30.769 0.00 0.00 0.00 1.94
443 444 6.980593 TGACAATGCTTATGTTGCTACTTTT 58.019 32.000 0.00 0.00 0.00 2.27
537 539 7.067116 GTCAATTTTGCATGCATTATATGTGC 58.933 34.615 23.37 10.63 42.81 4.57
538 540 8.132604 TGTCAATTTTGCATGCATTATATGTG 57.867 30.769 23.37 13.08 0.00 3.21
573 575 6.286202 GTTTGTGTCAAGAACGAACAAAAAC 58.714 36.000 5.14 5.14 41.37 2.43
575 577 4.918583 GGTTTGTGTCAAGAACGAACAAAA 59.081 37.500 8.50 0.00 41.72 2.44
581 583 2.675844 CTGTGGTTTGTGTCAAGAACGA 59.324 45.455 0.00 0.00 0.00 3.85
594 596 9.088987 AGATAACACATTTTTATCCTGTGGTTT 57.911 29.630 6.83 0.00 43.53 3.27
598 600 9.559958 GACAAGATAACACATTTTTATCCTGTG 57.440 33.333 9.87 0.00 39.26 3.66
609 611 7.950512 TGGTGAAATTGACAAGATAACACATT 58.049 30.769 0.00 0.00 0.00 2.71
673 675 8.102800 TCAAAAGACAGTTAGTAGTACATCGA 57.897 34.615 2.52 0.00 0.00 3.59
688 690 9.329913 CGGTGACTTTATTTAATCAAAAGACAG 57.670 33.333 7.07 0.00 36.23 3.51
689 691 9.058174 TCGGTGACTTTATTTAATCAAAAGACA 57.942 29.630 7.07 4.85 34.26 3.41
690 692 9.887406 TTCGGTGACTTTATTTAATCAAAAGAC 57.113 29.630 7.07 2.76 34.90 3.01
692 694 9.893305 ACTTCGGTGACTTTATTTAATCAAAAG 57.107 29.630 0.24 0.24 36.51 2.27
710 712 7.584987 AGATGATACTTTTTGAAACTTCGGTG 58.415 34.615 0.00 0.00 0.00 4.94
731 733 6.643360 TCAGCAAAACATGAAAATGTGAGATG 59.357 34.615 0.00 0.00 34.56 2.90
778 782 7.378181 GGGTCATTTCTTTCTTCTGCAAAATA 58.622 34.615 0.00 0.00 0.00 1.40
779 783 6.226052 GGGTCATTTCTTTCTTCTGCAAAAT 58.774 36.000 0.00 0.00 0.00 1.82
780 784 5.453198 GGGGTCATTTCTTTCTTCTGCAAAA 60.453 40.000 0.00 0.00 0.00 2.44
829 849 0.459078 GTCTACAGTACCTTCCCGGC 59.541 60.000 0.00 0.00 35.61 6.13
873 893 0.103937 TTGCTTGGCTGGTTTTTCGG 59.896 50.000 0.00 0.00 0.00 4.30
887 907 4.202357 GGGAGATTTTGGAGGTTTTTGCTT 60.202 41.667 0.00 0.00 0.00 3.91
895 915 3.239449 GTTTTGGGGAGATTTTGGAGGT 58.761 45.455 0.00 0.00 0.00 3.85
905 925 2.735259 ACTCTAGGGTTTTGGGGAGA 57.265 50.000 0.00 0.00 0.00 3.71
906 926 4.781934 CAATACTCTAGGGTTTTGGGGAG 58.218 47.826 15.89 0.00 0.00 4.30
907 927 3.053917 GCAATACTCTAGGGTTTTGGGGA 60.054 47.826 22.50 0.00 31.89 4.81
984 1004 1.079888 CATTTTCCCTTGGCCGTGC 60.080 57.895 0.00 0.00 0.00 5.34
1339 1359 1.909376 TTAACTCGCTCGCTTGCTAG 58.091 50.000 0.00 0.00 32.84 3.42
1347 1367 1.812214 GCCGCTGATTAACTCGCTCG 61.812 60.000 0.00 0.00 0.00 5.03
1350 1370 0.657840 AATGCCGCTGATTAACTCGC 59.342 50.000 0.00 0.00 0.00 5.03
1361 1381 0.251341 AGGAAGGAAACAATGCCGCT 60.251 50.000 0.00 0.00 0.00 5.52
1376 1396 1.229690 TGGAACGGATGGGGAGGAA 60.230 57.895 0.00 0.00 0.00 3.36
1378 1398 2.746375 CCTGGAACGGATGGGGAGG 61.746 68.421 0.00 0.00 36.31 4.30
1384 1404 2.438434 GGTGGCCTGGAACGGATG 60.438 66.667 3.32 0.00 36.31 3.51
1404 1427 1.531149 CTGAACTAAAGCACACCACGG 59.469 52.381 0.00 0.00 0.00 4.94
1446 1469 3.544834 GCATACATGAGCATTCGTCACAC 60.545 47.826 0.00 0.00 0.00 3.82
1452 1475 5.691754 TGTAGTAAGCATACATGAGCATTCG 59.308 40.000 0.00 0.00 34.29 3.34
1454 1477 7.500227 ACAATGTAGTAAGCATACATGAGCATT 59.500 33.333 0.00 2.39 41.79 3.56
1455 1478 6.994496 ACAATGTAGTAAGCATACATGAGCAT 59.006 34.615 0.00 0.00 41.79 3.79
1458 1481 8.338259 GGAAACAATGTAGTAAGCATACATGAG 58.662 37.037 0.00 3.26 41.79 2.90
1533 1561 3.718723 AGACTTCCCTAGATGCTTCTGT 58.281 45.455 12.19 0.41 33.17 3.41
1544 1572 8.934697 ACAATTATACTGCATTAGACTTCCCTA 58.065 33.333 0.00 0.00 0.00 3.53
1569 1598 1.986378 GTGCAGTCATCGTCACTGTAC 59.014 52.381 13.26 13.26 46.01 2.90
1578 1607 3.373130 AGACAATGAATGTGCAGTCATCG 59.627 43.478 14.22 7.21 44.23 3.84
1594 1623 9.288576 TCATCAGTATTTGAGAAAACAGACAAT 57.711 29.630 0.00 0.00 39.68 2.71
1621 1650 7.448161 TCGATTCCCTGAAATTGTATAATGCAT 59.552 33.333 0.00 0.00 0.00 3.96
1642 1672 9.378551 TCTGTGTTTATAGCATAAAACTCGATT 57.621 29.630 8.61 0.00 36.70 3.34
1785 1815 2.029380 AGTTTGCATTAGGGGCGAAAAC 60.029 45.455 0.00 0.00 36.46 2.43
1791 1835 2.037121 ACACAAAGTTTGCATTAGGGGC 59.963 45.455 15.59 0.00 0.00 5.80
1808 1852 0.528017 TTTTTCAGCGCACCAACACA 59.472 45.000 11.47 0.00 0.00 3.72
1809 1853 1.851658 ATTTTTCAGCGCACCAACAC 58.148 45.000 11.47 0.00 0.00 3.32
1810 1854 2.881513 TCTATTTTTCAGCGCACCAACA 59.118 40.909 11.47 0.00 0.00 3.33
1811 1855 3.552604 TCTATTTTTCAGCGCACCAAC 57.447 42.857 11.47 0.00 0.00 3.77
1819 1870 9.248291 TGTTTGATTTCTGTTCTATTTTTCAGC 57.752 29.630 0.00 0.00 0.00 4.26
1868 1919 2.423577 ACAGTGGAATTTACAGTCCGC 58.576 47.619 0.66 0.66 46.25 5.54
1870 1921 7.465513 CGCTATTTACAGTGGAATTTACAGTCC 60.466 40.741 0.00 0.00 37.70 3.85
1885 1936 7.560700 TCGTTAACAATATGCGCTATTTACAG 58.439 34.615 9.73 1.74 0.00 2.74
1888 1939 7.650504 AGTCTCGTTAACAATATGCGCTATTTA 59.349 33.333 9.73 0.00 0.00 1.40
1896 1947 9.245962 ACATACTTAGTCTCGTTAACAATATGC 57.754 33.333 6.39 0.00 0.00 3.14
1901 1952 7.806487 CACAGACATACTTAGTCTCGTTAACAA 59.194 37.037 6.39 0.00 44.11 2.83
1909 1960 5.926542 TGTTTGCACAGACATACTTAGTCTC 59.073 40.000 0.00 0.00 44.11 3.36
1996 2048 2.365617 GTCAGAATCTCGGAGGGCATTA 59.634 50.000 4.96 0.00 0.00 1.90
2047 2099 3.702048 GCACCGGAGCCAGTACCA 61.702 66.667 13.51 0.00 0.00 3.25
2095 2147 1.537562 CCGACAGTAAGATAACCGGCC 60.538 57.143 0.00 0.00 0.00 6.13
2140 2192 3.843240 GAGCGCTTGCGTCCTTCG 61.843 66.667 13.26 0.00 45.69 3.79
2169 2221 2.582052 TCTCAACGAGGCACCAAAAAT 58.418 42.857 0.00 0.00 0.00 1.82
2171 2223 2.045561 TTCTCAACGAGGCACCAAAA 57.954 45.000 0.00 0.00 0.00 2.44
2176 2228 4.156008 ACCAAATATTTCTCAACGAGGCAC 59.844 41.667 0.00 0.00 0.00 5.01
2177 2229 4.331968 ACCAAATATTTCTCAACGAGGCA 58.668 39.130 0.00 0.00 0.00 4.75
2178 2230 4.965119 ACCAAATATTTCTCAACGAGGC 57.035 40.909 0.00 0.00 0.00 4.70
2599 2897 7.255104 GCAATATCTAACAACCGATCATTTGGA 60.255 37.037 7.90 0.00 0.00 3.53
2653 2951 3.434739 GGACATCATCTGCCAGGAGAAAT 60.435 47.826 0.00 0.00 0.00 2.17
2662 2960 1.576356 GTCGAAGGACATCATCTGCC 58.424 55.000 0.00 0.00 42.91 4.85
2768 3066 7.965045 GTTTTTAACCATAGCAAAAACACACA 58.035 30.769 13.94 0.00 45.15 3.72
2800 3099 7.726216 AGCAAGAACAACCTTTTTAAGCTTAT 58.274 30.769 7.08 0.00 0.00 1.73
2803 3102 5.598416 AGCAAGAACAACCTTTTTAAGCT 57.402 34.783 0.00 0.00 0.00 3.74
2909 3209 4.657013 TCACATTTGGCTTACACCACATA 58.343 39.130 0.00 0.00 40.19 2.29
2927 3227 1.067142 GGTAGTGCCGATCTGTTCACA 60.067 52.381 0.00 0.00 32.25 3.58
2997 3297 0.833287 GAGCCCAGGTATCTGCAGAA 59.167 55.000 22.50 7.51 39.61 3.02
3196 3496 4.349636 TCTTGTAAAGTGATGTCCTTCCCA 59.650 41.667 0.00 0.00 46.34 4.37
3325 3626 3.278574 GCATGTATTGGTTCTACTGCCA 58.721 45.455 0.00 0.00 0.00 4.92
3341 3642 7.255695 CCATGTCAATGACCTAAATATGCATGT 60.256 37.037 10.16 0.00 35.67 3.21
3453 3755 4.522789 ACCACAGCTCCGAAAATTATGTTT 59.477 37.500 0.00 0.00 0.00 2.83
3561 3863 2.131709 TATCCGTGCTCCCTTCGGG 61.132 63.158 0.00 0.00 46.11 5.14
3599 3901 4.451150 CCGTTGCGAGGCTAGCCA 62.451 66.667 34.70 12.31 38.92 4.75
3749 4051 6.702282 CCAAAAAGAATAACACCGGCTAAAAA 59.298 34.615 0.00 0.00 0.00 1.94
3776 4078 9.977762 AAAACTAGTTTTAAGAGTGTTTACACG 57.022 29.630 27.98 0.00 44.33 4.49
3790 4092 8.928733 CCTAATCACTACGCAAAACTAGTTTTA 58.071 33.333 28.43 15.14 40.45 1.52
3820 4122 4.689071 TGAACAATACATACACTAGGCGG 58.311 43.478 0.00 0.00 0.00 6.13
3860 4162 6.681599 GTCAACGAACAGAACACTTTCTAAAC 59.318 38.462 0.00 0.00 40.34 2.01
3883 4186 1.809567 CTGGGGTTGCCAAAGCTGTC 61.810 60.000 0.00 0.00 40.80 3.51
3885 4188 2.576832 CCTGGGGTTGCCAAAGCTG 61.577 63.158 0.00 0.00 40.80 4.24
3944 4249 1.261619 CTAGCCGGATTCAACAATCGC 59.738 52.381 5.05 0.00 39.64 4.58
3959 4264 2.860735 CACTAACACGCAGAATCTAGCC 59.139 50.000 0.00 0.00 0.00 3.93
4055 4455 9.685828 GTTTGCATTATTTGTAGTTTCCTTACA 57.314 29.630 0.00 0.00 0.00 2.41
4132 4720 5.467035 TTTGGCAATATAAATAGGCAGGC 57.533 39.130 0.00 0.00 37.84 4.85
4133 4721 9.023962 TCTATTTTGGCAATATAAATAGGCAGG 57.976 33.333 20.85 5.86 40.08 4.85
4160 4748 7.139896 TGTATGTCGACAACATTTTAGCATT 57.860 32.000 24.13 3.36 46.73 3.56
4172 4760 6.162777 TGACAAATCTCATGTATGTCGACAA 58.837 36.000 24.13 6.61 42.47 3.18
4202 4792 6.655003 GGACATGACTGGTTTTTCTTGATCTA 59.345 38.462 0.00 0.00 0.00 1.98
4203 4793 5.474876 GGACATGACTGGTTTTTCTTGATCT 59.525 40.000 0.00 0.00 0.00 2.75
4204 4794 5.241506 TGGACATGACTGGTTTTTCTTGATC 59.758 40.000 0.00 0.00 0.00 2.92
4206 4796 4.531854 TGGACATGACTGGTTTTTCTTGA 58.468 39.130 0.00 0.00 0.00 3.02
4207 4797 4.916983 TGGACATGACTGGTTTTTCTTG 57.083 40.909 0.00 0.00 0.00 3.02
4208 4798 4.202151 GCTTGGACATGACTGGTTTTTCTT 60.202 41.667 0.00 0.00 0.00 2.52
4209 4799 3.319122 GCTTGGACATGACTGGTTTTTCT 59.681 43.478 0.00 0.00 0.00 2.52
4210 4800 3.068024 TGCTTGGACATGACTGGTTTTTC 59.932 43.478 0.00 0.00 0.00 2.29
4211 4801 3.030291 TGCTTGGACATGACTGGTTTTT 58.970 40.909 0.00 0.00 0.00 1.94
4305 4895 6.049790 CGACAAAACCCCCTGAAAAATTTAA 58.950 36.000 0.00 0.00 0.00 1.52
4307 4897 4.162509 TCGACAAAACCCCCTGAAAAATTT 59.837 37.500 0.00 0.00 0.00 1.82
4308 4898 3.707102 TCGACAAAACCCCCTGAAAAATT 59.293 39.130 0.00 0.00 0.00 1.82
4315 4907 1.003118 TCTCATCGACAAAACCCCCTG 59.997 52.381 0.00 0.00 0.00 4.45
4326 4918 4.925646 TGTGCTGCATATATTCTCATCGAC 59.074 41.667 5.27 0.00 0.00 4.20
4339 4931 1.001487 GTTGTGCACTTGTGCTGCATA 60.001 47.619 23.53 0.00 46.08 3.14
4350 4942 1.078072 TTGTCCGGTGTTGTGCACT 60.078 52.632 19.41 0.00 46.86 4.40
4355 4947 1.021968 GCTTTCTTGTCCGGTGTTGT 58.978 50.000 0.00 0.00 0.00 3.32
4393 4991 5.068198 CGGTGATACTTACTACCAAAGGCTA 59.932 44.000 0.00 0.00 32.75 3.93
4394 4992 4.142004 CGGTGATACTTACTACCAAAGGCT 60.142 45.833 0.00 0.00 32.75 4.58
4401 5011 1.342496 GGCCCGGTGATACTTACTACC 59.658 57.143 0.00 0.00 0.00 3.18
4402 5012 2.034124 TGGCCCGGTGATACTTACTAC 58.966 52.381 0.00 0.00 0.00 2.73
4404 5014 1.485066 CTTGGCCCGGTGATACTTACT 59.515 52.381 0.00 0.00 0.00 2.24
4405 5015 1.483415 TCTTGGCCCGGTGATACTTAC 59.517 52.381 0.00 0.00 0.00 2.34
4407 5017 0.988832 TTCTTGGCCCGGTGATACTT 59.011 50.000 0.00 0.00 0.00 2.24
4504 5146 4.164221 GGGACTAATCACTCTGGGAAATGA 59.836 45.833 0.00 0.00 0.00 2.57
4507 5149 3.263425 GTGGGACTAATCACTCTGGGAAA 59.737 47.826 0.00 0.00 0.00 3.13
4513 5155 2.101582 GCGATGTGGGACTAATCACTCT 59.898 50.000 0.00 0.00 35.15 3.24
4517 5159 1.473257 GCAGCGATGTGGGACTAATCA 60.473 52.381 1.22 0.00 0.00 2.57
4538 5180 4.175489 GTAGCGCTGCGACTCCGA 62.175 66.667 28.07 4.87 38.22 4.55
4540 5182 4.129737 TGGTAGCGCTGCGACTCC 62.130 66.667 28.07 21.77 34.70 3.85
4547 5189 4.765449 TGCTGCCTGGTAGCGCTG 62.765 66.667 27.77 3.20 43.95 5.18
4549 5191 2.650813 ATACTGCTGCCTGGTAGCGC 62.651 60.000 27.77 10.34 43.95 5.92
4550 5192 0.673985 TATACTGCTGCCTGGTAGCG 59.326 55.000 27.77 23.62 43.95 4.26
4553 5195 5.246203 CCTCTTTATATACTGCTGCCTGGTA 59.754 44.000 0.00 0.00 0.00 3.25
4554 5196 4.040952 CCTCTTTATATACTGCTGCCTGGT 59.959 45.833 0.00 0.00 0.00 4.00
4555 5197 4.564406 CCCTCTTTATATACTGCTGCCTGG 60.564 50.000 0.00 0.00 0.00 4.45
4560 5204 4.319177 GTGGCCCTCTTTATATACTGCTG 58.681 47.826 0.00 0.00 0.00 4.41
4582 5226 0.109132 GTGCCTTTGAATGGAAGCCG 60.109 55.000 0.70 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.