Multiple sequence alignment - TraesCS2D01G488600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G488600 chr2D 100.000 4178 0 0 939 5116 588125416 588121239 0.000000e+00 7716.0
1 TraesCS2D01G488600 chr2D 100.000 542 0 0 1 542 588126354 588125813 0.000000e+00 1002.0
2 TraesCS2D01G488600 chr2D 83.582 67 6 3 4848 4914 579054674 579054613 1.990000e-04 58.4
3 TraesCS2D01G488600 chr2B 93.957 3657 133 40 1111 4712 710900581 710896958 0.000000e+00 5448.0
4 TraesCS2D01G488600 chr2B 90.183 438 22 9 26 458 710901498 710901077 7.490000e-153 551.0
5 TraesCS2D01G488600 chr2B 90.123 81 8 0 4768 4848 710896424 710896344 7.010000e-19 106.0
6 TraesCS2D01G488600 chr2A 93.571 3313 114 44 946 4215 722739116 722735860 0.000000e+00 4846.0
7 TraesCS2D01G488600 chr2A 94.094 508 13 7 4228 4720 722735878 722735373 0.000000e+00 756.0
8 TraesCS2D01G488600 chr2A 88.702 416 19 10 36 449 722739672 722739283 2.770000e-132 483.0
9 TraesCS2D01G488600 chr2A 88.618 123 9 4 4726 4848 722735397 722735280 1.480000e-30 145.0
10 TraesCS2D01G488600 chr5B 80.172 232 37 6 2577 2801 475690358 475690587 1.140000e-36 165.0
11 TraesCS2D01G488600 chr5B 97.222 36 1 0 4879 4914 456511860 456511895 1.540000e-05 62.1
12 TraesCS2D01G488600 chr5D 81.967 183 31 2 2620 2801 395264343 395264524 2.470000e-33 154.0
13 TraesCS2D01G488600 chr5D 91.111 45 2 2 4884 4928 241831772 241831814 5.530000e-05 60.2
14 TraesCS2D01G488600 chr5D 100.000 31 0 0 4884 4914 133866403 133866373 1.990000e-04 58.4
15 TraesCS2D01G488600 chr1B 89.831 59 4 1 4856 4914 32476709 32476653 1.980000e-09 75.0
16 TraesCS2D01G488600 chr7B 83.099 71 8 2 4848 4914 10665999 10665929 1.540000e-05 62.1
17 TraesCS2D01G488600 chr7D 92.857 42 1 2 4874 4914 616950054 616950094 5.530000e-05 60.2
18 TraesCS2D01G488600 chr3A 86.441 59 2 5 4856 4914 127787238 127787186 5.530000e-05 60.2
19 TraesCS2D01G488600 chr1D 100.000 32 0 0 4883 4914 3579497 3579528 5.530000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G488600 chr2D 588121239 588126354 5115 True 4359.0 7716 100.00000 1 5116 2 chr2D.!!$R2 5115
1 TraesCS2D01G488600 chr2B 710896344 710901498 5154 True 2035.0 5448 91.42100 26 4848 3 chr2B.!!$R1 4822
2 TraesCS2D01G488600 chr2A 722735280 722739672 4392 True 1557.5 4846 91.24625 36 4848 4 chr2A.!!$R1 4812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
465 470 0.326143 AGAGAGAGAAAGCCTCCCCC 60.326 60.0 0.00 0.0 42.97 5.40 F
1254 1708 0.396811 AGAACCAGAACCAGAACCCG 59.603 55.0 0.00 0.0 0.00 5.28 F
1670 2148 0.689623 AACAAGGAGAGGTGAGCCAG 59.310 55.0 0.00 0.0 37.19 4.85 F
2014 2502 0.719465 CGTAACGGCTGATTCGCTTT 59.281 50.0 0.00 0.0 0.00 3.51 F
2059 2547 0.950836 CGTTGTCCATTTCTGCCACA 59.049 50.0 0.00 0.0 0.00 4.17 F
3053 3542 1.429463 CTCTTGACCCAAGTACGTGC 58.571 55.0 2.94 0.0 41.66 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 2424 0.895530 ACATCCTAGACACCACACCG 59.104 55.000 0.00 0.0 0.00 4.94 R
3233 3724 0.250234 TGGCTAGCGCATCAGAAACT 59.750 50.000 11.47 0.0 38.10 2.66 R
3385 3876 2.413796 CAGTACGTATCCGCAAGCAAAA 59.586 45.455 0.00 0.0 37.70 2.44 R
3947 4452 2.224137 GGATCTCATGCGTCTCAATGGA 60.224 50.000 0.00 0.0 0.00 3.41 R
4034 4539 1.669115 GCAGCCGAACAGCTCTTGA 60.669 57.895 0.00 0.0 42.61 3.02 R
4960 6004 0.030235 GGTGAACCGGCTTTGTCAAC 59.970 55.000 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 45 2.043227 GGGGAGGTCTCACTCATTAGG 58.957 57.143 0.00 0.00 39.27 2.69
77 79 2.681778 CTCAGCCCACGTCCCTCT 60.682 66.667 0.00 0.00 0.00 3.69
131 134 2.813908 CTGCCGCAACCGTAGACC 60.814 66.667 0.00 0.00 0.00 3.85
217 220 1.793714 CGCAACAACCGCATATCCAAC 60.794 52.381 0.00 0.00 0.00 3.77
453 458 1.541233 GCGAGGAGGAGAGAGAGAGAG 60.541 61.905 0.00 0.00 0.00 3.20
454 459 2.039418 CGAGGAGGAGAGAGAGAGAGA 58.961 57.143 0.00 0.00 0.00 3.10
455 460 2.434336 CGAGGAGGAGAGAGAGAGAGAA 59.566 54.545 0.00 0.00 0.00 2.87
456 461 3.118408 CGAGGAGGAGAGAGAGAGAGAAA 60.118 52.174 0.00 0.00 0.00 2.52
457 462 4.455606 GAGGAGGAGAGAGAGAGAGAAAG 58.544 52.174 0.00 0.00 0.00 2.62
458 463 2.952310 GGAGGAGAGAGAGAGAGAAAGC 59.048 54.545 0.00 0.00 0.00 3.51
459 464 2.952310 GAGGAGAGAGAGAGAGAAAGCC 59.048 54.545 0.00 0.00 0.00 4.35
460 465 2.582636 AGGAGAGAGAGAGAGAAAGCCT 59.417 50.000 0.00 0.00 0.00 4.58
461 466 2.952310 GGAGAGAGAGAGAGAAAGCCTC 59.048 54.545 0.00 0.00 42.28 4.70
462 467 2.952310 GAGAGAGAGAGAGAAAGCCTCC 59.048 54.545 0.00 0.00 42.97 4.30
463 468 2.031870 GAGAGAGAGAGAAAGCCTCCC 58.968 57.143 0.00 0.00 42.97 4.30
464 469 1.119684 GAGAGAGAGAAAGCCTCCCC 58.880 60.000 0.00 0.00 42.97 4.81
465 470 0.326143 AGAGAGAGAAAGCCTCCCCC 60.326 60.000 0.00 0.00 42.97 5.40
466 471 0.618968 GAGAGAGAAAGCCTCCCCCA 60.619 60.000 0.00 0.00 42.97 4.96
467 472 0.620121 AGAGAGAAAGCCTCCCCCAG 60.620 60.000 0.00 0.00 42.97 4.45
468 473 1.617839 AGAGAAAGCCTCCCCCAGG 60.618 63.158 0.00 0.00 46.82 4.45
469 474 2.615288 AGAAAGCCTCCCCCAGGG 60.615 66.667 0.00 0.00 43.70 4.45
480 485 3.027533 CCCCAGGGAAATCAGGAGA 57.972 57.895 7.25 0.00 37.50 3.71
481 486 0.842635 CCCCAGGGAAATCAGGAGAG 59.157 60.000 7.25 0.00 37.50 3.20
482 487 1.626350 CCCCAGGGAAATCAGGAGAGA 60.626 57.143 7.25 0.00 37.50 3.10
483 488 1.767681 CCCAGGGAAATCAGGAGAGAG 59.232 57.143 0.00 0.00 0.00 3.20
484 489 2.628021 CCCAGGGAAATCAGGAGAGAGA 60.628 54.545 0.00 0.00 0.00 3.10
485 490 3.110705 CCAGGGAAATCAGGAGAGAGAA 58.889 50.000 0.00 0.00 0.00 2.87
486 491 3.521126 CCAGGGAAATCAGGAGAGAGAAA 59.479 47.826 0.00 0.00 0.00 2.52
487 492 4.383989 CCAGGGAAATCAGGAGAGAGAAAG 60.384 50.000 0.00 0.00 0.00 2.62
488 493 3.779738 AGGGAAATCAGGAGAGAGAAAGG 59.220 47.826 0.00 0.00 0.00 3.11
489 494 3.118075 GGGAAATCAGGAGAGAGAAAGGG 60.118 52.174 0.00 0.00 0.00 3.95
490 495 3.118075 GGAAATCAGGAGAGAGAAAGGGG 60.118 52.174 0.00 0.00 0.00 4.79
491 496 1.506025 ATCAGGAGAGAGAAAGGGGC 58.494 55.000 0.00 0.00 0.00 5.80
492 497 0.972983 TCAGGAGAGAGAAAGGGGCG 60.973 60.000 0.00 0.00 0.00 6.13
493 498 1.687493 AGGAGAGAGAAAGGGGCGG 60.687 63.158 0.00 0.00 0.00 6.13
494 499 1.686110 GGAGAGAGAAAGGGGCGGA 60.686 63.158 0.00 0.00 0.00 5.54
495 500 1.681486 GGAGAGAGAAAGGGGCGGAG 61.681 65.000 0.00 0.00 0.00 4.63
511 516 3.032017 CGGAGCTAGAGAGAGAGAGAG 57.968 57.143 0.00 0.00 0.00 3.20
512 517 2.289072 CGGAGCTAGAGAGAGAGAGAGG 60.289 59.091 0.00 0.00 0.00 3.69
513 518 2.039084 GGAGCTAGAGAGAGAGAGAGGG 59.961 59.091 0.00 0.00 0.00 4.30
514 519 2.039084 GAGCTAGAGAGAGAGAGAGGGG 59.961 59.091 0.00 0.00 0.00 4.79
515 520 1.073923 GCTAGAGAGAGAGAGAGGGGG 59.926 61.905 0.00 0.00 0.00 5.40
1254 1708 0.396811 AGAACCAGAACCAGAACCCG 59.603 55.000 0.00 0.00 0.00 5.28
1336 1799 3.151022 AGCTCCCGCTAGAGGTGC 61.151 66.667 11.91 14.40 46.79 5.01
1337 1800 3.461773 GCTCCCGCTAGAGGTGCA 61.462 66.667 18.08 0.00 42.23 4.57
1399 1874 2.697425 CGATTCAGCCGCAGTTCG 59.303 61.111 0.00 0.00 38.08 3.95
1629 2107 3.017581 ATCACCTCCCCCACAGCC 61.018 66.667 0.00 0.00 0.00 4.85
1670 2148 0.689623 AACAAGGAGAGGTGAGCCAG 59.310 55.000 0.00 0.00 37.19 4.85
1698 2176 4.498493 ACAATTAGGGTTTTGTTCCCCAT 58.502 39.130 0.00 0.00 45.64 4.00
1711 2189 4.415596 TGTTCCCCATATTGAGTTGCTTT 58.584 39.130 0.00 0.00 0.00 3.51
1712 2190 4.220382 TGTTCCCCATATTGAGTTGCTTTG 59.780 41.667 0.00 0.00 0.00 2.77
1763 2243 4.583073 ACTGAAATTTAGGTGGTTGGACAC 59.417 41.667 0.00 0.00 40.60 3.67
1857 2337 4.402155 TGGATTCATGAAATGGCACCTAAC 59.598 41.667 13.09 0.00 46.73 2.34
1877 2364 3.022710 GCGGCGGTAGGTTTAGGGT 62.023 63.158 9.78 0.00 0.00 4.34
1960 2447 3.451178 GGTGTGGTGTCTAGGATGTATGT 59.549 47.826 0.00 0.00 0.00 2.29
1961 2448 4.647853 GGTGTGGTGTCTAGGATGTATGTA 59.352 45.833 0.00 0.00 0.00 2.29
1963 2450 6.216569 GTGTGGTGTCTAGGATGTATGTATG 58.783 44.000 0.00 0.00 0.00 2.39
1972 2459 8.194104 GTCTAGGATGTATGTATGCTTAGGATG 58.806 40.741 0.00 0.00 30.91 3.51
2014 2502 0.719465 CGTAACGGCTGATTCGCTTT 59.281 50.000 0.00 0.00 0.00 3.51
2024 2512 1.944024 TGATTCGCTTTGTGACCGTTT 59.056 42.857 0.00 0.00 0.00 3.60
2059 2547 0.950836 CGTTGTCCATTTCTGCCACA 59.049 50.000 0.00 0.00 0.00 4.17
2263 2751 5.018539 AGATTAAGCTGTACATGCCGTAA 57.981 39.130 11.98 11.17 0.00 3.18
2264 2752 5.050490 AGATTAAGCTGTACATGCCGTAAG 58.950 41.667 11.98 0.00 0.00 2.34
2322 2810 3.443681 ACCTGTTTCTTTGTCTGTGTTGG 59.556 43.478 0.00 0.00 0.00 3.77
2450 2938 5.190925 TGGCTGATTTGGTACATAGGTAGTT 59.809 40.000 0.00 0.00 39.30 2.24
2451 2939 5.527582 GGCTGATTTGGTACATAGGTAGTTG 59.472 44.000 0.00 0.00 39.30 3.16
2545 3034 1.953559 TGCCTCAACACTGAACTGTC 58.046 50.000 0.00 0.00 0.00 3.51
2559 3048 7.439955 ACACTGAACTGTCGTATTTTCATGTAA 59.560 33.333 0.00 0.00 0.00 2.41
3053 3542 1.429463 CTCTTGACCCAAGTACGTGC 58.571 55.000 2.94 0.00 41.66 5.34
3227 3718 9.220767 CCTACTATAAATCAAAATCAGCCCTAC 57.779 37.037 0.00 0.00 0.00 3.18
3233 3724 2.568062 TCAAAATCAGCCCTACGTGGTA 59.432 45.455 0.00 0.00 0.00 3.25
3359 3850 2.802719 TGGATGTGCCTTAACCTTTCC 58.197 47.619 0.00 0.00 37.63 3.13
3385 3876 3.706086 ACTTGCAGGATTCCAGTTTGTTT 59.294 39.130 1.40 0.00 0.00 2.83
3565 4057 4.749598 CAGTAGCTGTGTGTCATGTTTACA 59.250 41.667 0.00 0.00 0.00 2.41
3577 4075 8.420222 TGTGTCATGTTTACATCTTTGGAAAAT 58.580 29.630 0.00 0.00 37.41 1.82
3621 4119 2.977914 AGACCATCTTGGATGTGTTCG 58.022 47.619 0.00 0.00 40.96 3.95
3630 4128 2.521126 TGGATGTGTTCGTCCTACAGA 58.479 47.619 7.78 0.00 46.74 3.41
3663 4161 9.770503 CTTGAATGCTTCATGATATATTGTAGC 57.229 33.333 0.00 0.00 39.84 3.58
3671 4169 9.964253 CTTCATGATATATTGTAGCGATTGTTC 57.036 33.333 0.00 0.00 0.00 3.18
3681 4179 6.561737 TGTAGCGATTGTTCTATCCTAGAG 57.438 41.667 0.00 0.00 35.96 2.43
3684 4182 4.279671 AGCGATTGTTCTATCCTAGAGTGG 59.720 45.833 0.00 0.00 35.96 4.00
3685 4183 4.278669 GCGATTGTTCTATCCTAGAGTGGA 59.721 45.833 0.00 0.00 40.82 4.02
3687 4185 6.517529 GCGATTGTTCTATCCTAGAGTGGATT 60.518 42.308 1.16 0.00 43.79 3.01
3688 4186 6.865726 CGATTGTTCTATCCTAGAGTGGATTG 59.134 42.308 1.16 0.46 43.79 2.67
3691 4189 5.363868 TGTTCTATCCTAGAGTGGATTGTGG 59.636 44.000 1.16 0.00 43.79 4.17
3751 4252 8.522830 ACACACATTTATAATGCTAGCAGTTTT 58.477 29.630 24.19 14.83 0.00 2.43
3786 4287 3.055891 ACAATTGTTGCATTAAGAGGCCC 60.056 43.478 4.92 0.00 0.00 5.80
3854 4355 6.515200 GCACTTCTCTGTAAAGTAGTGTCAGA 60.515 42.308 10.87 0.00 43.02 3.27
3869 4370 5.051816 AGTGTCAGAAAATGTTTGCCAATG 58.948 37.500 0.00 0.00 0.00 2.82
3987 4492 7.066645 TGAGATCCATTCATGTTCTGTTTGATC 59.933 37.037 0.00 0.00 0.00 2.92
4034 4539 7.443575 GCATCAATACTATGTGATTCCAGTCTT 59.556 37.037 0.00 0.00 32.06 3.01
4213 4718 5.545588 TGCAAGTAGATCTAGGATTGCATC 58.454 41.667 28.88 13.73 45.66 3.91
4271 4776 4.437390 CCGATGCACTGATTAACCTTGTTC 60.437 45.833 0.00 0.00 0.00 3.18
4312 4826 2.297315 GTCCATGCAGATGTAGGATCGA 59.703 50.000 0.00 0.00 0.00 3.59
4444 4959 5.065218 GTCAGATTATTTGTGGTAGCCTGTG 59.935 44.000 0.00 0.00 0.00 3.66
4525 5042 7.551262 TGAGTTGTTGTTAGCTTTAGTTTCTGA 59.449 33.333 0.00 0.00 0.00 3.27
4636 5153 0.687354 ATGCTGAGGTTCTCGTTGGT 59.313 50.000 0.00 0.00 32.35 3.67
4641 5158 2.561419 CTGAGGTTCTCGTTGGTCCTTA 59.439 50.000 0.00 0.00 32.35 2.69
4659 5176 1.368641 TACATGGTCACTGCATTCGC 58.631 50.000 0.00 0.00 39.24 4.70
4696 5223 0.245539 CTTGGGGAATTGCTGCACAG 59.754 55.000 0.00 0.00 26.26 3.66
4697 5224 0.178967 TTGGGGAATTGCTGCACAGA 60.179 50.000 0.00 0.00 26.26 3.41
4698 5225 0.040058 TGGGGAATTGCTGCACAGAT 59.960 50.000 0.00 0.00 0.00 2.90
4699 5226 1.284491 TGGGGAATTGCTGCACAGATA 59.716 47.619 0.00 0.00 0.00 1.98
4700 5227 2.291475 TGGGGAATTGCTGCACAGATAA 60.291 45.455 0.00 0.00 0.00 1.75
4701 5228 2.099756 GGGGAATTGCTGCACAGATAAC 59.900 50.000 0.00 0.00 0.00 1.89
4702 5229 2.099756 GGGAATTGCTGCACAGATAACC 59.900 50.000 0.00 1.54 0.00 2.85
4703 5230 3.019564 GGAATTGCTGCACAGATAACCT 58.980 45.455 0.00 0.00 0.00 3.50
4704 5231 3.065925 GGAATTGCTGCACAGATAACCTC 59.934 47.826 0.00 0.00 0.00 3.85
4705 5232 3.641434 ATTGCTGCACAGATAACCTCT 57.359 42.857 0.00 0.00 33.14 3.69
4706 5233 4.760530 ATTGCTGCACAGATAACCTCTA 57.239 40.909 0.00 0.00 31.13 2.43
4707 5234 3.526931 TGCTGCACAGATAACCTCTAC 57.473 47.619 0.00 0.00 31.13 2.59
4708 5235 2.831526 TGCTGCACAGATAACCTCTACA 59.168 45.455 0.00 0.00 31.13 2.74
4709 5236 3.190874 GCTGCACAGATAACCTCTACAC 58.809 50.000 0.81 0.00 31.13 2.90
4710 5237 3.118956 GCTGCACAGATAACCTCTACACT 60.119 47.826 0.81 0.00 31.13 3.55
4711 5238 4.621747 GCTGCACAGATAACCTCTACACTT 60.622 45.833 0.81 0.00 31.13 3.16
4712 5239 5.482908 CTGCACAGATAACCTCTACACTTT 58.517 41.667 0.00 0.00 31.13 2.66
4713 5240 5.865085 TGCACAGATAACCTCTACACTTTT 58.135 37.500 0.00 0.00 31.13 2.27
4714 5241 6.296026 TGCACAGATAACCTCTACACTTTTT 58.704 36.000 0.00 0.00 31.13 1.94
4814 5858 5.476945 GGAAAAGTCAGGGCATCTTCTTTTA 59.523 40.000 13.39 0.00 37.28 1.52
4816 5860 3.956744 AGTCAGGGCATCTTCTTTTACC 58.043 45.455 0.00 0.00 0.00 2.85
4831 5875 0.973632 TTACCTGCAGAAAGCCTCGA 59.026 50.000 17.39 0.00 44.83 4.04
4854 5898 2.577059 CAGCGGCTCGTCCCTTTA 59.423 61.111 0.00 0.00 0.00 1.85
4855 5899 1.144057 CAGCGGCTCGTCCCTTTAT 59.856 57.895 0.00 0.00 0.00 1.40
4856 5900 0.387929 CAGCGGCTCGTCCCTTTATA 59.612 55.000 0.00 0.00 0.00 0.98
4857 5901 1.117150 AGCGGCTCGTCCCTTTATAA 58.883 50.000 0.00 0.00 0.00 0.98
4858 5902 1.483415 AGCGGCTCGTCCCTTTATAAA 59.517 47.619 0.00 0.00 0.00 1.40
4859 5903 1.865340 GCGGCTCGTCCCTTTATAAAG 59.135 52.381 16.90 16.90 35.79 1.85
4881 5925 8.410673 AAAGGAATATAAGAGCGTCTAGATCA 57.589 34.615 0.00 0.00 37.82 2.92
4882 5926 8.410673 AAGGAATATAAGAGCGTCTAGATCAA 57.589 34.615 0.00 0.00 37.82 2.57
4883 5927 8.588290 AGGAATATAAGAGCGTCTAGATCAAT 57.412 34.615 0.00 0.00 37.82 2.57
4884 5928 9.688091 AGGAATATAAGAGCGTCTAGATCAATA 57.312 33.333 0.00 0.00 37.82 1.90
4888 5932 9.776158 ATATAAGAGCGTCTAGATCAATAAACG 57.224 33.333 0.00 0.00 37.82 3.60
4910 5954 7.242914 ACGCTTTTATATTTCTTTACGGAGG 57.757 36.000 0.00 0.00 0.00 4.30
4911 5955 6.259387 ACGCTTTTATATTTCTTTACGGAGGG 59.741 38.462 0.00 0.00 0.00 4.30
4912 5956 6.480981 CGCTTTTATATTTCTTTACGGAGGGA 59.519 38.462 0.00 0.00 0.00 4.20
4913 5957 7.307219 CGCTTTTATATTTCTTTACGGAGGGAG 60.307 40.741 0.00 0.00 0.00 4.30
4914 5958 7.520131 GCTTTTATATTTCTTTACGGAGGGAGC 60.520 40.741 0.00 0.00 0.00 4.70
4915 5959 2.311124 ATTTCTTTACGGAGGGAGCG 57.689 50.000 0.00 0.00 0.00 5.03
4916 5960 0.248289 TTTCTTTACGGAGGGAGCGG 59.752 55.000 0.00 0.00 0.00 5.52
4917 5961 0.612732 TTCTTTACGGAGGGAGCGGA 60.613 55.000 0.00 0.00 0.00 5.54
4918 5962 0.396695 TCTTTACGGAGGGAGCGGAT 60.397 55.000 0.00 0.00 0.00 4.18
4919 5963 1.133699 TCTTTACGGAGGGAGCGGATA 60.134 52.381 0.00 0.00 0.00 2.59
4920 5964 1.269998 CTTTACGGAGGGAGCGGATAG 59.730 57.143 0.00 0.00 0.00 2.08
4921 5965 0.184451 TTACGGAGGGAGCGGATAGT 59.816 55.000 0.00 0.00 0.00 2.12
4922 5966 1.059098 TACGGAGGGAGCGGATAGTA 58.941 55.000 0.00 0.00 0.00 1.82
4923 5967 0.536915 ACGGAGGGAGCGGATAGTAC 60.537 60.000 0.00 0.00 0.00 2.73
4924 5968 0.250814 CGGAGGGAGCGGATAGTACT 60.251 60.000 0.00 0.00 0.00 2.73
4925 5969 1.002888 CGGAGGGAGCGGATAGTACTA 59.997 57.143 4.77 4.77 0.00 1.82
4926 5970 2.713877 GGAGGGAGCGGATAGTACTAG 58.286 57.143 8.85 0.00 0.00 2.57
4927 5971 2.086094 GAGGGAGCGGATAGTACTAGC 58.914 57.143 9.73 9.73 0.00 3.42
4928 5972 1.424302 AGGGAGCGGATAGTACTAGCA 59.576 52.381 19.21 0.00 0.00 3.49
4929 5973 1.813786 GGGAGCGGATAGTACTAGCAG 59.186 57.143 19.21 16.13 0.00 4.24
4930 5974 2.506444 GGAGCGGATAGTACTAGCAGT 58.494 52.381 19.21 6.76 0.00 4.40
4931 5975 3.558746 GGGAGCGGATAGTACTAGCAGTA 60.559 52.174 19.21 0.00 0.00 2.74
4942 5986 3.791973 ACTAGCAGTACTGTGATGAGC 57.208 47.619 23.44 7.82 0.00 4.26
4943 5987 3.360867 ACTAGCAGTACTGTGATGAGCT 58.639 45.455 23.44 14.66 34.84 4.09
4944 5988 4.527944 ACTAGCAGTACTGTGATGAGCTA 58.472 43.478 23.44 14.99 32.49 3.32
4945 5989 4.950475 ACTAGCAGTACTGTGATGAGCTAA 59.050 41.667 23.44 2.49 33.31 3.09
4946 5990 4.116747 AGCAGTACTGTGATGAGCTAAC 57.883 45.455 23.44 2.92 0.00 2.34
4947 5991 3.766591 AGCAGTACTGTGATGAGCTAACT 59.233 43.478 23.44 5.20 0.00 2.24
4948 5992 4.950475 AGCAGTACTGTGATGAGCTAACTA 59.050 41.667 23.44 0.00 0.00 2.24
4949 5993 5.419155 AGCAGTACTGTGATGAGCTAACTAA 59.581 40.000 23.44 0.00 0.00 2.24
4950 5994 6.071334 AGCAGTACTGTGATGAGCTAACTAAA 60.071 38.462 23.44 0.00 0.00 1.85
4951 5995 6.758886 GCAGTACTGTGATGAGCTAACTAAAT 59.241 38.462 23.44 0.00 0.00 1.40
4952 5996 7.278868 GCAGTACTGTGATGAGCTAACTAAATT 59.721 37.037 23.44 0.00 0.00 1.82
4953 5997 9.803315 CAGTACTGTGATGAGCTAACTAAATTA 57.197 33.333 15.06 0.00 0.00 1.40
4955 5999 9.804758 GTACTGTGATGAGCTAACTAAATTAGT 57.195 33.333 0.00 0.00 42.19 2.24
4957 6001 9.804758 ACTGTGATGAGCTAACTAAATTAGTAC 57.195 33.333 6.04 0.00 42.19 2.73
4958 6002 9.803315 CTGTGATGAGCTAACTAAATTAGTACA 57.197 33.333 6.04 3.25 42.19 2.90
4966 6010 9.938280 AGCTAACTAAATTAGTACATGTTGACA 57.062 29.630 2.30 0.00 42.19 3.58
4970 6014 9.893305 AACTAAATTAGTACATGTTGACAAAGC 57.107 29.630 2.30 0.00 38.26 3.51
4971 6015 8.512138 ACTAAATTAGTACATGTTGACAAAGCC 58.488 33.333 2.30 0.00 37.23 4.35
4972 6016 5.545658 ATTAGTACATGTTGACAAAGCCG 57.454 39.130 2.30 0.00 0.00 5.52
4973 6017 2.151202 AGTACATGTTGACAAAGCCGG 58.849 47.619 2.30 0.00 0.00 6.13
4974 6018 1.877443 GTACATGTTGACAAAGCCGGT 59.123 47.619 2.30 0.00 0.00 5.28
4975 6019 1.398692 ACATGTTGACAAAGCCGGTT 58.601 45.000 1.90 0.00 0.00 4.44
4976 6020 1.336755 ACATGTTGACAAAGCCGGTTC 59.663 47.619 1.90 0.00 0.00 3.62
4977 6021 1.336440 CATGTTGACAAAGCCGGTTCA 59.664 47.619 1.90 0.00 0.00 3.18
4978 6022 0.736053 TGTTGACAAAGCCGGTTCAC 59.264 50.000 1.90 0.00 0.00 3.18
4979 6023 0.030235 GTTGACAAAGCCGGTTCACC 59.970 55.000 1.90 0.00 0.00 4.02
4980 6024 0.394488 TTGACAAAGCCGGTTCACCA 60.394 50.000 1.90 0.00 35.14 4.17
4981 6025 0.179004 TGACAAAGCCGGTTCACCAT 60.179 50.000 1.90 0.00 35.14 3.55
4982 6026 1.072489 TGACAAAGCCGGTTCACCATA 59.928 47.619 1.90 0.00 35.14 2.74
4983 6027 2.156098 GACAAAGCCGGTTCACCATAA 58.844 47.619 1.90 0.00 35.14 1.90
4984 6028 2.554893 GACAAAGCCGGTTCACCATAAA 59.445 45.455 1.90 0.00 35.14 1.40
4985 6029 2.959707 ACAAAGCCGGTTCACCATAAAA 59.040 40.909 1.90 0.00 35.14 1.52
4986 6030 3.385111 ACAAAGCCGGTTCACCATAAAAA 59.615 39.130 1.90 0.00 35.14 1.94
4987 6031 4.039852 ACAAAGCCGGTTCACCATAAAAAT 59.960 37.500 1.90 0.00 35.14 1.82
4988 6032 3.866883 AGCCGGTTCACCATAAAAATG 57.133 42.857 1.90 0.00 35.14 2.32
4989 6033 2.495669 AGCCGGTTCACCATAAAAATGG 59.504 45.455 1.90 2.84 46.92 3.16
4990 6034 2.494073 GCCGGTTCACCATAAAAATGGA 59.506 45.455 11.28 0.00 44.39 3.41
4991 6035 3.056465 GCCGGTTCACCATAAAAATGGAA 60.056 43.478 11.28 0.00 44.39 3.53
4992 6036 4.490743 CCGGTTCACCATAAAAATGGAAC 58.509 43.478 11.28 6.03 44.39 3.62
4993 6037 4.219725 CCGGTTCACCATAAAAATGGAACT 59.780 41.667 11.28 0.00 44.39 3.01
4994 6038 5.160641 CGGTTCACCATAAAAATGGAACTG 58.839 41.667 11.28 7.26 44.39 3.16
4995 6039 5.048364 CGGTTCACCATAAAAATGGAACTGA 60.048 40.000 11.28 2.28 44.39 3.41
4996 6040 6.515862 CGGTTCACCATAAAAATGGAACTGAA 60.516 38.462 11.28 7.85 44.39 3.02
4997 6041 7.386059 GGTTCACCATAAAAATGGAACTGAAT 58.614 34.615 11.28 0.00 44.39 2.57
4998 6042 7.331687 GGTTCACCATAAAAATGGAACTGAATG 59.668 37.037 11.28 0.00 44.39 2.67
4999 6043 6.934056 TCACCATAAAAATGGAACTGAATGG 58.066 36.000 11.28 0.00 44.39 3.16
5000 6044 6.070881 TCACCATAAAAATGGAACTGAATGGG 60.071 38.462 11.28 0.00 44.39 4.00
5001 6045 5.189539 ACCATAAAAATGGAACTGAATGGGG 59.810 40.000 11.28 0.00 44.39 4.96
5002 6046 5.396660 CCATAAAAATGGAACTGAATGGGGG 60.397 44.000 0.00 0.00 44.39 5.40
5003 6047 3.558608 AAAATGGAACTGAATGGGGGA 57.441 42.857 0.00 0.00 0.00 4.81
5004 6048 2.532250 AATGGAACTGAATGGGGGAC 57.468 50.000 0.00 0.00 0.00 4.46
5005 6049 0.255890 ATGGAACTGAATGGGGGACG 59.744 55.000 0.00 0.00 0.00 4.79
5006 6050 1.131303 TGGAACTGAATGGGGGACGT 61.131 55.000 0.00 0.00 0.00 4.34
5007 6051 0.392595 GGAACTGAATGGGGGACGTC 60.393 60.000 7.13 7.13 0.00 4.34
5008 6052 0.323629 GAACTGAATGGGGGACGTCA 59.676 55.000 18.91 0.00 0.00 4.35
5009 6053 0.768622 AACTGAATGGGGGACGTCAA 59.231 50.000 18.91 0.00 0.00 3.18
5010 6054 0.324943 ACTGAATGGGGGACGTCAAG 59.675 55.000 18.91 3.90 0.00 3.02
5011 6055 1.002624 TGAATGGGGGACGTCAAGC 60.003 57.895 18.91 0.00 0.00 4.01
5012 6056 1.002624 GAATGGGGGACGTCAAGCA 60.003 57.895 18.91 0.00 0.00 3.91
5013 6057 1.002134 AATGGGGGACGTCAAGCAG 60.002 57.895 18.91 0.00 0.00 4.24
5014 6058 1.488705 AATGGGGGACGTCAAGCAGA 61.489 55.000 18.91 0.00 0.00 4.26
5015 6059 2.047179 GGGGGACGTCAAGCAGAC 60.047 66.667 18.91 0.00 44.02 3.51
5021 6065 4.819362 GGGACGTCAAGCAGACAATCCA 62.819 54.545 18.91 0.00 46.69 3.41
5050 6094 5.869753 TTCTTTTGAGTTCTCTGCTATGC 57.130 39.130 1.53 0.00 0.00 3.14
5051 6095 4.898320 TCTTTTGAGTTCTCTGCTATGCA 58.102 39.130 0.00 0.00 36.92 3.96
5052 6096 5.494724 TCTTTTGAGTTCTCTGCTATGCAT 58.505 37.500 3.79 3.79 38.13 3.96
5053 6097 5.942236 TCTTTTGAGTTCTCTGCTATGCATT 59.058 36.000 3.54 0.00 38.13 3.56
5054 6098 6.432162 TCTTTTGAGTTCTCTGCTATGCATTT 59.568 34.615 3.54 0.00 38.13 2.32
5055 6099 6.579666 TTTGAGTTCTCTGCTATGCATTTT 57.420 33.333 3.54 0.00 38.13 1.82
5056 6100 6.579666 TTGAGTTCTCTGCTATGCATTTTT 57.420 33.333 3.54 0.00 38.13 1.94
5075 6119 5.813965 TTTTTCCCCATTAGAATCCTCCT 57.186 39.130 0.00 0.00 0.00 3.69
5076 6120 5.388599 TTTTCCCCATTAGAATCCTCCTC 57.611 43.478 0.00 0.00 0.00 3.71
5077 6121 3.724966 TCCCCATTAGAATCCTCCTCA 57.275 47.619 0.00 0.00 0.00 3.86
5078 6122 3.318313 TCCCCATTAGAATCCTCCTCAC 58.682 50.000 0.00 0.00 0.00 3.51
5079 6123 3.051032 TCCCCATTAGAATCCTCCTCACT 60.051 47.826 0.00 0.00 0.00 3.41
5080 6124 3.072184 CCCCATTAGAATCCTCCTCACTG 59.928 52.174 0.00 0.00 0.00 3.66
5081 6125 3.969976 CCCATTAGAATCCTCCTCACTGA 59.030 47.826 0.00 0.00 0.00 3.41
5082 6126 4.202305 CCCATTAGAATCCTCCTCACTGAC 60.202 50.000 0.00 0.00 0.00 3.51
5083 6127 4.500545 CCATTAGAATCCTCCTCACTGACG 60.501 50.000 0.00 0.00 0.00 4.35
5084 6128 0.820871 AGAATCCTCCTCACTGACGC 59.179 55.000 0.00 0.00 0.00 5.19
5085 6129 0.179097 GAATCCTCCTCACTGACGCC 60.179 60.000 0.00 0.00 0.00 5.68
5086 6130 0.904865 AATCCTCCTCACTGACGCCA 60.905 55.000 0.00 0.00 0.00 5.69
5087 6131 1.326213 ATCCTCCTCACTGACGCCAG 61.326 60.000 0.00 0.00 45.76 4.85
5088 6132 2.575993 CTCCTCACTGACGCCAGG 59.424 66.667 3.10 0.00 44.60 4.45
5089 6133 3.655810 CTCCTCACTGACGCCAGGC 62.656 68.421 3.10 0.00 44.60 4.85
5100 6144 3.056328 GCCAGGCGGAGTTTCCAC 61.056 66.667 0.00 0.00 35.91 4.02
5101 6145 2.742372 CCAGGCGGAGTTTCCACG 60.742 66.667 0.00 0.00 35.91 4.94
5102 6146 2.742372 CAGGCGGAGTTTCCACGG 60.742 66.667 0.00 0.00 35.91 4.94
5103 6147 2.920912 AGGCGGAGTTTCCACGGA 60.921 61.111 0.00 0.00 35.91 4.69
5104 6148 2.267961 GGCGGAGTTTCCACGGAT 59.732 61.111 0.00 0.00 35.91 4.18
5105 6149 1.814169 GGCGGAGTTTCCACGGATC 60.814 63.158 0.00 0.00 35.91 3.36
5106 6150 1.814169 GCGGAGTTTCCACGGATCC 60.814 63.158 0.00 0.00 35.91 3.36
5107 6151 1.898154 CGGAGTTTCCACGGATCCT 59.102 57.895 10.75 0.00 35.91 3.24
5108 6152 0.179108 CGGAGTTTCCACGGATCCTC 60.179 60.000 10.75 0.00 35.91 3.71
5109 6153 0.902531 GGAGTTTCCACGGATCCTCA 59.097 55.000 10.75 0.00 36.28 3.86
5110 6154 1.405661 GGAGTTTCCACGGATCCTCAC 60.406 57.143 10.75 0.00 36.28 3.51
5111 6155 1.275291 GAGTTTCCACGGATCCTCACA 59.725 52.381 10.75 0.00 0.00 3.58
5112 6156 1.276421 AGTTTCCACGGATCCTCACAG 59.724 52.381 10.75 0.00 0.00 3.66
5113 6157 1.002087 GTTTCCACGGATCCTCACAGT 59.998 52.381 10.75 0.00 0.00 3.55
5114 6158 1.348064 TTCCACGGATCCTCACAGTT 58.652 50.000 10.75 0.00 0.00 3.16
5115 6159 1.348064 TCCACGGATCCTCACAGTTT 58.652 50.000 10.75 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.503927 CCCTCCTCATTGGATGTATATTGG 58.496 45.833 0.00 0.00 45.16 3.16
1 2 5.503927 CCCCTCCTCATTGGATGTATATTG 58.496 45.833 0.00 0.00 45.16 1.90
2 3 4.541714 CCCCCTCCTCATTGGATGTATATT 59.458 45.833 0.00 0.00 45.16 1.28
3 4 4.114597 CCCCCTCCTCATTGGATGTATAT 58.885 47.826 0.00 0.00 45.16 0.86
4 5 3.531059 CCCCCTCCTCATTGGATGTATA 58.469 50.000 0.00 0.00 45.16 1.47
5 6 2.352371 CCCCCTCCTCATTGGATGTAT 58.648 52.381 0.00 0.00 45.16 2.29
6 7 1.819753 CCCCCTCCTCATTGGATGTA 58.180 55.000 0.00 0.00 45.16 2.29
7 8 2.637919 CCCCCTCCTCATTGGATGT 58.362 57.895 0.00 0.00 45.16 3.06
22 23 2.043227 CTAATGAGTGAGACCTCCCCC 58.957 57.143 0.00 0.00 0.00 5.40
23 24 2.043227 CCTAATGAGTGAGACCTCCCC 58.957 57.143 0.00 0.00 0.00 4.81
24 25 1.414550 GCCTAATGAGTGAGACCTCCC 59.585 57.143 0.00 0.00 0.00 4.30
43 45 3.660621 GCCGAAGCTATGGATGGC 58.339 61.111 8.29 2.09 35.50 4.40
217 220 4.135153 CGAGAGTGCCCTCCGGTG 62.135 72.222 0.00 0.00 38.58 4.94
461 466 0.624500 TCTCCTGATTTCCCTGGGGG 60.625 60.000 14.00 4.90 46.11 5.40
462 467 0.842635 CTCTCCTGATTTCCCTGGGG 59.157 60.000 14.00 2.42 0.00 4.96
463 468 1.767681 CTCTCTCCTGATTTCCCTGGG 59.232 57.143 6.33 6.33 0.00 4.45
464 469 2.756907 TCTCTCTCCTGATTTCCCTGG 58.243 52.381 0.00 0.00 0.00 4.45
465 470 4.383989 CCTTTCTCTCTCCTGATTTCCCTG 60.384 50.000 0.00 0.00 0.00 4.45
466 471 3.779738 CCTTTCTCTCTCCTGATTTCCCT 59.220 47.826 0.00 0.00 0.00 4.20
467 472 3.118075 CCCTTTCTCTCTCCTGATTTCCC 60.118 52.174 0.00 0.00 0.00 3.97
468 473 3.118075 CCCCTTTCTCTCTCCTGATTTCC 60.118 52.174 0.00 0.00 0.00 3.13
469 474 3.684130 GCCCCTTTCTCTCTCCTGATTTC 60.684 52.174 0.00 0.00 0.00 2.17
470 475 2.240921 GCCCCTTTCTCTCTCCTGATTT 59.759 50.000 0.00 0.00 0.00 2.17
471 476 1.843206 GCCCCTTTCTCTCTCCTGATT 59.157 52.381 0.00 0.00 0.00 2.57
472 477 1.506025 GCCCCTTTCTCTCTCCTGAT 58.494 55.000 0.00 0.00 0.00 2.90
473 478 0.972983 CGCCCCTTTCTCTCTCCTGA 60.973 60.000 0.00 0.00 0.00 3.86
474 479 1.519719 CGCCCCTTTCTCTCTCCTG 59.480 63.158 0.00 0.00 0.00 3.86
475 480 1.687493 CCGCCCCTTTCTCTCTCCT 60.687 63.158 0.00 0.00 0.00 3.69
476 481 1.681486 CTCCGCCCCTTTCTCTCTCC 61.681 65.000 0.00 0.00 0.00 3.71
477 482 1.819905 CTCCGCCCCTTTCTCTCTC 59.180 63.158 0.00 0.00 0.00 3.20
478 483 2.363172 GCTCCGCCCCTTTCTCTCT 61.363 63.158 0.00 0.00 0.00 3.10
479 484 1.043673 TAGCTCCGCCCCTTTCTCTC 61.044 60.000 0.00 0.00 0.00 3.20
480 485 1.001760 TAGCTCCGCCCCTTTCTCT 59.998 57.895 0.00 0.00 0.00 3.10
481 486 1.043673 TCTAGCTCCGCCCCTTTCTC 61.044 60.000 0.00 0.00 0.00 2.87
482 487 1.001760 TCTAGCTCCGCCCCTTTCT 59.998 57.895 0.00 0.00 0.00 2.52
483 488 1.043673 TCTCTAGCTCCGCCCCTTTC 61.044 60.000 0.00 0.00 0.00 2.62
484 489 1.001760 TCTCTAGCTCCGCCCCTTT 59.998 57.895 0.00 0.00 0.00 3.11
485 490 1.456705 CTCTCTAGCTCCGCCCCTT 60.457 63.158 0.00 0.00 0.00 3.95
486 491 2.197324 CTCTCTAGCTCCGCCCCT 59.803 66.667 0.00 0.00 0.00 4.79
487 492 1.901464 CTCTCTCTAGCTCCGCCCC 60.901 68.421 0.00 0.00 0.00 5.80
488 493 0.889186 CTCTCTCTCTAGCTCCGCCC 60.889 65.000 0.00 0.00 0.00 6.13
489 494 0.107831 TCTCTCTCTCTAGCTCCGCC 59.892 60.000 0.00 0.00 0.00 6.13
490 495 1.070134 TCTCTCTCTCTCTAGCTCCGC 59.930 57.143 0.00 0.00 0.00 5.54
491 496 2.289072 CCTCTCTCTCTCTCTAGCTCCG 60.289 59.091 0.00 0.00 0.00 4.63
492 497 2.039084 CCCTCTCTCTCTCTCTAGCTCC 59.961 59.091 0.00 0.00 0.00 4.70
493 498 2.039084 CCCCTCTCTCTCTCTCTAGCTC 59.961 59.091 0.00 0.00 0.00 4.09
494 499 2.057922 CCCCTCTCTCTCTCTCTAGCT 58.942 57.143 0.00 0.00 0.00 3.32
495 500 1.073923 CCCCCTCTCTCTCTCTCTAGC 59.926 61.905 0.00 0.00 0.00 3.42
938 943 4.547367 CCACCGCGATTCCCCTCC 62.547 72.222 8.23 0.00 0.00 4.30
939 944 4.547367 CCCACCGCGATTCCCCTC 62.547 72.222 8.23 0.00 0.00 4.30
941 946 3.931190 AAACCCACCGCGATTCCCC 62.931 63.158 8.23 0.00 0.00 4.81
942 947 1.974875 AAAACCCACCGCGATTCCC 60.975 57.895 8.23 0.00 0.00 3.97
943 948 1.211709 CAAAACCCACCGCGATTCC 59.788 57.895 8.23 0.00 0.00 3.01
944 949 1.211709 CCAAAACCCACCGCGATTC 59.788 57.895 8.23 0.00 0.00 2.52
1329 1792 3.903616 CTGCTGCTGCTGCACCTCT 62.904 63.158 27.01 0.00 45.31 3.69
1670 2148 6.351541 GGGAACAAAACCCTAATTGTTATCCC 60.352 42.308 10.86 10.86 46.60 3.85
1698 2176 5.704978 TGCAGTGTATCAAAGCAACTCAATA 59.295 36.000 0.00 0.00 31.42 1.90
1711 2189 4.350245 AGGTAGGTAGTTGCAGTGTATCA 58.650 43.478 0.00 0.00 0.00 2.15
1712 2190 5.340439 AAGGTAGGTAGTTGCAGTGTATC 57.660 43.478 0.00 0.00 0.00 2.24
1763 2243 3.785486 TCACATGAATCGACCAGCTAAG 58.215 45.455 0.00 0.00 0.00 2.18
1857 2337 1.520787 CCTAAACCTACCGCCGCTG 60.521 63.158 0.00 0.00 0.00 5.18
1864 2344 5.301045 GCCATATTGAAACCCTAAACCTACC 59.699 44.000 0.00 0.00 0.00 3.18
1877 2364 5.303971 CCCAACAAAGTTGCCATATTGAAA 58.696 37.500 4.42 0.00 0.00 2.69
1937 2424 0.895530 ACATCCTAGACACCACACCG 59.104 55.000 0.00 0.00 0.00 4.94
1960 2447 5.801531 ACGGTAATGACATCCTAAGCATA 57.198 39.130 0.00 0.00 0.00 3.14
1961 2448 4.689612 ACGGTAATGACATCCTAAGCAT 57.310 40.909 0.00 0.00 0.00 3.79
1963 2450 5.813080 AAAACGGTAATGACATCCTAAGC 57.187 39.130 0.00 0.00 0.00 3.09
2014 2502 7.086230 ACAAAACTATAAACAAACGGTCACA 57.914 32.000 0.00 0.00 0.00 3.58
2024 2512 7.317842 TGGACAACGAACAAAACTATAAACA 57.682 32.000 0.00 0.00 0.00 2.83
2155 2643 5.181690 ACGGATATGTGCGCATTTTAAAT 57.818 34.783 19.46 5.01 43.59 1.40
2163 2651 1.069358 TCCATAACGGATATGTGCGCA 59.931 47.619 5.66 5.66 43.59 6.09
2195 2683 1.881973 GCTGTCCTGAACTTCATTGCA 59.118 47.619 0.00 0.00 0.00 4.08
2322 2810 1.813178 GGGTAGGCAGAAAACAAGAGC 59.187 52.381 0.00 0.00 0.00 4.09
2559 3048 2.898612 TGTTGAACATGGGTGCATGAAT 59.101 40.909 0.00 0.00 30.89 2.57
3227 3718 0.370273 GCGCATCAGAAACTACCACG 59.630 55.000 0.30 0.00 0.00 4.94
3233 3724 0.250234 TGGCTAGCGCATCAGAAACT 59.750 50.000 11.47 0.00 38.10 2.66
3359 3850 5.010012 ACAAACTGGAATCCTGCAAGTAAAG 59.990 40.000 6.06 0.00 0.00 1.85
3385 3876 2.413796 CAGTACGTATCCGCAAGCAAAA 59.586 45.455 0.00 0.00 37.70 2.44
3565 4057 4.452114 GCGGCTTGAAAATTTTCCAAAGAT 59.548 37.500 24.50 0.00 36.36 2.40
3577 4075 3.451141 AAAGACAATGCGGCTTGAAAA 57.549 38.095 15.68 0.00 0.00 2.29
3608 4106 3.056821 TCTGTAGGACGAACACATCCAAG 60.057 47.826 0.00 0.00 37.47 3.61
3621 4119 5.350091 GCATTCAAGAGTCTTTCTGTAGGAC 59.650 44.000 1.56 0.00 35.91 3.85
3681 4179 2.306847 ACAGTTCCAACCACAATCCAC 58.693 47.619 0.00 0.00 0.00 4.02
3684 4182 4.331968 TGGATACAGTTCCAACCACAATC 58.668 43.478 2.86 0.00 46.17 2.67
3685 4183 4.380843 TGGATACAGTTCCAACCACAAT 57.619 40.909 2.86 0.00 46.17 2.71
3686 4184 3.866703 TGGATACAGTTCCAACCACAA 57.133 42.857 2.86 0.00 46.17 3.33
3751 4252 8.659925 ATGCAACAATTGTTTTCTGTATTTGA 57.340 26.923 21.10 0.00 35.83 2.69
3786 4287 4.871993 ATTCTGCTGCTATTCTGAAACG 57.128 40.909 0.00 0.00 0.00 3.60
3854 4355 5.248020 TGGAGGTATCATTGGCAAACATTTT 59.752 36.000 3.01 0.00 0.00 1.82
3869 4370 3.456277 AGGTGAAAGGACATGGAGGTATC 59.544 47.826 0.00 0.00 0.00 2.24
3947 4452 2.224137 GGATCTCATGCGTCTCAATGGA 60.224 50.000 0.00 0.00 0.00 3.41
3987 4492 3.190849 CGCAGGATCCTGTGCACG 61.191 66.667 35.78 27.71 45.65 5.34
4034 4539 1.669115 GCAGCCGAACAGCTCTTGA 60.669 57.895 0.00 0.00 42.61 3.02
4155 4660 3.006323 GCTGATGTACACTGGATAGAGGG 59.994 52.174 0.00 0.00 0.00 4.30
4213 4718 4.701651 TCCATGTATCAGCAGAAAAACTGG 59.298 41.667 0.00 0.00 45.82 4.00
4217 4722 6.016024 GGCATATCCATGTATCAGCAGAAAAA 60.016 38.462 0.00 0.00 34.40 1.94
4223 4728 3.054875 GGAGGCATATCCATGTATCAGCA 60.055 47.826 0.00 0.00 39.34 4.41
4271 4776 2.818714 CGAGCAGAGCAGGGCAAG 60.819 66.667 0.00 0.00 0.00 4.01
4444 4959 3.492421 CCAATACACACATGGCAAGTC 57.508 47.619 0.00 0.00 0.00 3.01
4525 5042 6.407202 AGTCAGTAAAGACACTTTGACACTT 58.593 36.000 13.49 0.00 40.98 3.16
4606 5123 4.762251 AGAACCTCAGCATAAACCTTTCAC 59.238 41.667 0.00 0.00 0.00 3.18
4636 5153 3.609853 GAATGCAGTGACCATGTAAGGA 58.390 45.455 0.00 0.00 0.00 3.36
4641 5158 2.174334 GCGAATGCAGTGACCATGT 58.826 52.632 0.00 0.00 42.15 3.21
4659 5176 5.107143 CCCCAAGAAATGCAAAATTAACGTG 60.107 40.000 0.00 0.00 0.00 4.49
4714 5241 4.903045 AGAGGTTATCTCCCGTCAAAAA 57.097 40.909 0.00 0.00 43.44 1.94
4715 5242 4.773674 TGTAGAGGTTATCTCCCGTCAAAA 59.226 41.667 0.00 0.00 43.44 2.44
4716 5243 4.159135 GTGTAGAGGTTATCTCCCGTCAAA 59.841 45.833 0.00 0.00 43.44 2.69
4717 5244 3.698040 GTGTAGAGGTTATCTCCCGTCAA 59.302 47.826 0.00 0.00 43.44 3.18
4718 5245 3.053842 AGTGTAGAGGTTATCTCCCGTCA 60.054 47.826 0.00 0.00 43.44 4.35
4719 5246 3.553904 AGTGTAGAGGTTATCTCCCGTC 58.446 50.000 0.00 0.00 43.44 4.79
4720 5247 3.666345 AGTGTAGAGGTTATCTCCCGT 57.334 47.619 0.00 0.00 43.44 5.28
4721 5248 6.651975 AATAAGTGTAGAGGTTATCTCCCG 57.348 41.667 0.00 0.00 43.44 5.14
4749 5276 1.144913 AGCTTACAGGTGCCTTTTCCA 59.855 47.619 0.00 0.00 0.00 3.53
4766 5810 5.514500 TCTTATTTTGGGGAACTACAGCT 57.486 39.130 0.00 0.00 0.00 4.24
4814 5858 0.107945 GATCGAGGCTTTCTGCAGGT 60.108 55.000 15.13 0.00 45.15 4.00
4816 5860 2.741612 CTAGATCGAGGCTTTCTGCAG 58.258 52.381 7.63 7.63 45.15 4.41
4855 5899 9.516546 TGATCTAGACGCTCTTATATTCCTTTA 57.483 33.333 0.00 0.00 0.00 1.85
4856 5900 8.410673 TGATCTAGACGCTCTTATATTCCTTT 57.589 34.615 0.00 0.00 0.00 3.11
4857 5901 8.410673 TTGATCTAGACGCTCTTATATTCCTT 57.589 34.615 0.00 0.00 0.00 3.36
4858 5902 8.588290 ATTGATCTAGACGCTCTTATATTCCT 57.412 34.615 0.00 0.00 0.00 3.36
4862 5906 9.776158 CGTTTATTGATCTAGACGCTCTTATAT 57.224 33.333 0.00 0.00 0.00 0.86
4863 5907 7.749570 GCGTTTATTGATCTAGACGCTCTTATA 59.250 37.037 17.49 0.72 46.05 0.98
4864 5908 6.583050 GCGTTTATTGATCTAGACGCTCTTAT 59.417 38.462 17.49 1.47 46.05 1.73
4865 5909 5.913514 GCGTTTATTGATCTAGACGCTCTTA 59.086 40.000 17.49 0.00 46.05 2.10
4866 5910 4.740695 GCGTTTATTGATCTAGACGCTCTT 59.259 41.667 17.49 0.00 46.05 2.85
4867 5911 4.291783 GCGTTTATTGATCTAGACGCTCT 58.708 43.478 17.49 0.00 46.05 4.09
4868 5912 4.616747 GCGTTTATTGATCTAGACGCTC 57.383 45.455 17.49 0.16 46.05 5.03
4884 5928 8.179615 CCTCCGTAAAGAAATATAAAAGCGTTT 58.820 33.333 2.53 2.53 0.00 3.60
4885 5929 7.201670 CCCTCCGTAAAGAAATATAAAAGCGTT 60.202 37.037 0.00 0.00 0.00 4.84
4886 5930 6.259387 CCCTCCGTAAAGAAATATAAAAGCGT 59.741 38.462 0.00 0.00 0.00 5.07
4887 5931 6.480981 TCCCTCCGTAAAGAAATATAAAAGCG 59.519 38.462 0.00 0.00 0.00 4.68
4888 5932 7.520131 GCTCCCTCCGTAAAGAAATATAAAAGC 60.520 40.741 0.00 0.00 0.00 3.51
4889 5933 7.307219 CGCTCCCTCCGTAAAGAAATATAAAAG 60.307 40.741 0.00 0.00 0.00 2.27
4890 5934 6.480981 CGCTCCCTCCGTAAAGAAATATAAAA 59.519 38.462 0.00 0.00 0.00 1.52
4891 5935 5.987347 CGCTCCCTCCGTAAAGAAATATAAA 59.013 40.000 0.00 0.00 0.00 1.40
4892 5936 5.510179 CCGCTCCCTCCGTAAAGAAATATAA 60.510 44.000 0.00 0.00 0.00 0.98
4893 5937 4.021719 CCGCTCCCTCCGTAAAGAAATATA 60.022 45.833 0.00 0.00 0.00 0.86
4894 5938 3.244112 CCGCTCCCTCCGTAAAGAAATAT 60.244 47.826 0.00 0.00 0.00 1.28
4895 5939 2.101917 CCGCTCCCTCCGTAAAGAAATA 59.898 50.000 0.00 0.00 0.00 1.40
4896 5940 1.134491 CCGCTCCCTCCGTAAAGAAAT 60.134 52.381 0.00 0.00 0.00 2.17
4897 5941 0.248289 CCGCTCCCTCCGTAAAGAAA 59.752 55.000 0.00 0.00 0.00 2.52
4898 5942 0.612732 TCCGCTCCCTCCGTAAAGAA 60.613 55.000 0.00 0.00 0.00 2.52
4899 5943 0.396695 ATCCGCTCCCTCCGTAAAGA 60.397 55.000 0.00 0.00 0.00 2.52
4900 5944 1.269998 CTATCCGCTCCCTCCGTAAAG 59.730 57.143 0.00 0.00 0.00 1.85
4901 5945 1.325355 CTATCCGCTCCCTCCGTAAA 58.675 55.000 0.00 0.00 0.00 2.01
4902 5946 0.184451 ACTATCCGCTCCCTCCGTAA 59.816 55.000 0.00 0.00 0.00 3.18
4903 5947 1.059098 TACTATCCGCTCCCTCCGTA 58.941 55.000 0.00 0.00 0.00 4.02
4904 5948 0.536915 GTACTATCCGCTCCCTCCGT 60.537 60.000 0.00 0.00 0.00 4.69
4905 5949 0.250814 AGTACTATCCGCTCCCTCCG 60.251 60.000 0.00 0.00 0.00 4.63
4906 5950 2.713877 CTAGTACTATCCGCTCCCTCC 58.286 57.143 2.33 0.00 0.00 4.30
4907 5951 2.086094 GCTAGTACTATCCGCTCCCTC 58.914 57.143 2.33 0.00 0.00 4.30
4908 5952 1.424302 TGCTAGTACTATCCGCTCCCT 59.576 52.381 2.33 0.00 0.00 4.20
4909 5953 1.813786 CTGCTAGTACTATCCGCTCCC 59.186 57.143 2.33 0.00 0.00 4.30
4910 5954 2.506444 ACTGCTAGTACTATCCGCTCC 58.494 52.381 2.33 0.00 0.00 4.70
4911 5955 4.666928 GTACTGCTAGTACTATCCGCTC 57.333 50.000 2.33 0.00 45.70 5.03
4921 5965 4.527944 AGCTCATCACAGTACTGCTAGTA 58.472 43.478 22.90 5.31 0.00 1.82
4922 5966 3.360867 AGCTCATCACAGTACTGCTAGT 58.639 45.455 22.90 0.00 0.00 2.57
4923 5967 5.067153 AGTTAGCTCATCACAGTACTGCTAG 59.933 44.000 22.90 12.87 33.88 3.42
4924 5968 4.950475 AGTTAGCTCATCACAGTACTGCTA 59.050 41.667 22.90 13.07 0.00 3.49
4925 5969 3.766591 AGTTAGCTCATCACAGTACTGCT 59.233 43.478 22.90 14.08 0.00 4.24
4926 5970 4.116747 AGTTAGCTCATCACAGTACTGC 57.883 45.455 22.90 6.89 0.00 4.40
4927 5971 8.709386 AATTTAGTTAGCTCATCACAGTACTG 57.291 34.615 21.44 21.44 0.00 2.74
4929 5973 9.804758 ACTAATTTAGTTAGCTCATCACAGTAC 57.195 33.333 3.16 0.00 42.96 2.73
4931 5975 9.804758 GTACTAATTTAGTTAGCTCATCACAGT 57.195 33.333 14.00 0.00 42.96 3.55
4932 5976 9.803315 TGTACTAATTTAGTTAGCTCATCACAG 57.197 33.333 14.00 0.00 42.96 3.66
4940 5984 9.938280 TGTCAACATGTACTAATTTAGTTAGCT 57.062 29.630 14.00 0.00 42.96 3.32
4944 5988 9.893305 GCTTTGTCAACATGTACTAATTTAGTT 57.107 29.630 14.00 0.00 40.14 2.24
4945 5989 8.512138 GGCTTTGTCAACATGTACTAATTTAGT 58.488 33.333 13.36 13.36 42.68 2.24
4946 5990 7.692291 CGGCTTTGTCAACATGTACTAATTTAG 59.308 37.037 0.00 1.79 0.00 1.85
4947 5991 7.361371 CCGGCTTTGTCAACATGTACTAATTTA 60.361 37.037 0.00 0.00 0.00 1.40
4948 5992 6.378582 CGGCTTTGTCAACATGTACTAATTT 58.621 36.000 0.00 0.00 0.00 1.82
4949 5993 5.106317 CCGGCTTTGTCAACATGTACTAATT 60.106 40.000 0.00 0.00 0.00 1.40
4950 5994 4.394920 CCGGCTTTGTCAACATGTACTAAT 59.605 41.667 0.00 0.00 0.00 1.73
4951 5995 3.749088 CCGGCTTTGTCAACATGTACTAA 59.251 43.478 0.00 0.00 0.00 2.24
4952 5996 3.244284 ACCGGCTTTGTCAACATGTACTA 60.244 43.478 0.00 0.00 0.00 1.82
4953 5997 2.151202 CCGGCTTTGTCAACATGTACT 58.849 47.619 0.00 0.00 0.00 2.73
4954 5998 1.877443 ACCGGCTTTGTCAACATGTAC 59.123 47.619 0.00 0.00 0.00 2.90
4955 5999 2.264005 ACCGGCTTTGTCAACATGTA 57.736 45.000 0.00 0.00 0.00 2.29
4956 6000 1.336755 GAACCGGCTTTGTCAACATGT 59.663 47.619 0.00 0.00 0.00 3.21
4957 6001 1.336440 TGAACCGGCTTTGTCAACATG 59.664 47.619 0.00 0.00 0.00 3.21
4958 6002 1.336755 GTGAACCGGCTTTGTCAACAT 59.663 47.619 0.00 0.00 0.00 2.71
4959 6003 0.736053 GTGAACCGGCTTTGTCAACA 59.264 50.000 0.00 0.00 0.00 3.33
4960 6004 0.030235 GGTGAACCGGCTTTGTCAAC 59.970 55.000 0.00 0.00 0.00 3.18
4961 6005 0.394488 TGGTGAACCGGCTTTGTCAA 60.394 50.000 0.00 0.00 39.43 3.18
4962 6006 0.179004 ATGGTGAACCGGCTTTGTCA 60.179 50.000 0.00 0.00 39.43 3.58
4963 6007 1.816074 TATGGTGAACCGGCTTTGTC 58.184 50.000 0.00 0.00 39.43 3.18
4964 6008 2.279935 TTATGGTGAACCGGCTTTGT 57.720 45.000 0.00 0.00 39.43 2.83
4965 6009 3.651803 TTTTATGGTGAACCGGCTTTG 57.348 42.857 0.00 0.00 39.43 2.77
4966 6010 4.562552 CCATTTTTATGGTGAACCGGCTTT 60.563 41.667 0.00 0.00 39.43 3.51
4967 6011 3.056179 CCATTTTTATGGTGAACCGGCTT 60.056 43.478 0.00 0.00 39.43 4.35
4968 6012 2.495669 CCATTTTTATGGTGAACCGGCT 59.504 45.455 0.00 0.00 39.43 5.52
4969 6013 2.494073 TCCATTTTTATGGTGAACCGGC 59.506 45.455 0.00 0.00 42.28 6.13
4970 6014 4.219725 AGTTCCATTTTTATGGTGAACCGG 59.780 41.667 0.00 0.00 42.28 5.28
4971 6015 5.048364 TCAGTTCCATTTTTATGGTGAACCG 60.048 40.000 4.24 0.00 42.28 4.44
4972 6016 6.339587 TCAGTTCCATTTTTATGGTGAACC 57.660 37.500 4.24 0.00 42.28 3.62
4973 6017 7.331687 CCATTCAGTTCCATTTTTATGGTGAAC 59.668 37.037 9.51 6.00 42.28 3.18
4974 6018 7.385267 CCATTCAGTTCCATTTTTATGGTGAA 58.615 34.615 9.65 9.65 42.28 3.18
4975 6019 6.070881 CCCATTCAGTTCCATTTTTATGGTGA 60.071 38.462 4.24 0.00 42.28 4.02
4976 6020 6.108015 CCCATTCAGTTCCATTTTTATGGTG 58.892 40.000 4.24 0.00 42.28 4.17
4977 6021 5.189539 CCCCATTCAGTTCCATTTTTATGGT 59.810 40.000 4.24 0.00 42.28 3.55
4978 6022 5.396660 CCCCCATTCAGTTCCATTTTTATGG 60.397 44.000 0.00 0.00 43.01 2.74
4979 6023 5.424895 TCCCCCATTCAGTTCCATTTTTATG 59.575 40.000 0.00 0.00 0.00 1.90
4980 6024 5.425217 GTCCCCCATTCAGTTCCATTTTTAT 59.575 40.000 0.00 0.00 0.00 1.40
4981 6025 4.775253 GTCCCCCATTCAGTTCCATTTTTA 59.225 41.667 0.00 0.00 0.00 1.52
4982 6026 3.582647 GTCCCCCATTCAGTTCCATTTTT 59.417 43.478 0.00 0.00 0.00 1.94
4983 6027 3.173151 GTCCCCCATTCAGTTCCATTTT 58.827 45.455 0.00 0.00 0.00 1.82
4984 6028 2.820178 GTCCCCCATTCAGTTCCATTT 58.180 47.619 0.00 0.00 0.00 2.32
4985 6029 1.340991 CGTCCCCCATTCAGTTCCATT 60.341 52.381 0.00 0.00 0.00 3.16
4986 6030 0.255890 CGTCCCCCATTCAGTTCCAT 59.744 55.000 0.00 0.00 0.00 3.41
4987 6031 1.131303 ACGTCCCCCATTCAGTTCCA 61.131 55.000 0.00 0.00 0.00 3.53
4988 6032 0.392595 GACGTCCCCCATTCAGTTCC 60.393 60.000 3.51 0.00 0.00 3.62
4989 6033 0.323629 TGACGTCCCCCATTCAGTTC 59.676 55.000 14.12 0.00 0.00 3.01
4990 6034 0.768622 TTGACGTCCCCCATTCAGTT 59.231 50.000 14.12 0.00 0.00 3.16
4991 6035 0.324943 CTTGACGTCCCCCATTCAGT 59.675 55.000 14.12 0.00 0.00 3.41
4992 6036 1.026718 GCTTGACGTCCCCCATTCAG 61.027 60.000 14.12 0.00 0.00 3.02
4993 6037 1.002624 GCTTGACGTCCCCCATTCA 60.003 57.895 14.12 0.00 0.00 2.57
4994 6038 1.002624 TGCTTGACGTCCCCCATTC 60.003 57.895 14.12 0.00 0.00 2.67
4995 6039 1.002134 CTGCTTGACGTCCCCCATT 60.002 57.895 14.12 0.00 0.00 3.16
4996 6040 1.918293 TCTGCTTGACGTCCCCCAT 60.918 57.895 14.12 0.00 0.00 4.00
4997 6041 2.525629 TCTGCTTGACGTCCCCCA 60.526 61.111 14.12 6.05 0.00 4.96
4998 6042 2.047179 GTCTGCTTGACGTCCCCC 60.047 66.667 14.12 1.15 35.81 5.40
5025 6069 7.141363 GCATAGCAGAGAACTCAAAAGAAAAA 58.859 34.615 4.64 0.00 0.00 1.94
5026 6070 6.262944 TGCATAGCAGAGAACTCAAAAGAAAA 59.737 34.615 4.64 0.00 33.32 2.29
5027 6071 5.764686 TGCATAGCAGAGAACTCAAAAGAAA 59.235 36.000 4.64 0.00 33.32 2.52
5028 6072 5.308014 TGCATAGCAGAGAACTCAAAAGAA 58.692 37.500 4.64 0.00 33.32 2.52
5029 6073 4.898320 TGCATAGCAGAGAACTCAAAAGA 58.102 39.130 4.64 0.00 33.32 2.52
5030 6074 5.814764 ATGCATAGCAGAGAACTCAAAAG 57.185 39.130 0.00 0.00 43.65 2.27
5031 6075 6.579666 AAATGCATAGCAGAGAACTCAAAA 57.420 33.333 0.00 0.00 43.65 2.44
5032 6076 6.579666 AAAATGCATAGCAGAGAACTCAAA 57.420 33.333 0.00 0.00 43.65 2.69
5033 6077 6.579666 AAAAATGCATAGCAGAGAACTCAA 57.420 33.333 0.00 0.00 43.65 3.02
5053 6097 5.255207 TGAGGAGGATTCTAATGGGGAAAAA 59.745 40.000 0.00 0.00 0.00 1.94
5054 6098 4.793520 TGAGGAGGATTCTAATGGGGAAAA 59.206 41.667 0.00 0.00 0.00 2.29
5055 6099 4.166144 GTGAGGAGGATTCTAATGGGGAAA 59.834 45.833 0.00 0.00 0.00 3.13
5056 6100 3.716872 GTGAGGAGGATTCTAATGGGGAA 59.283 47.826 0.00 0.00 0.00 3.97
5057 6101 3.051032 AGTGAGGAGGATTCTAATGGGGA 60.051 47.826 0.00 0.00 0.00 4.81
5058 6102 3.072184 CAGTGAGGAGGATTCTAATGGGG 59.928 52.174 0.00 0.00 0.00 4.96
5059 6103 3.969976 TCAGTGAGGAGGATTCTAATGGG 59.030 47.826 0.00 0.00 0.00 4.00
5060 6104 4.500545 CGTCAGTGAGGAGGATTCTAATGG 60.501 50.000 7.03 0.00 0.00 3.16
5061 6105 4.615949 CGTCAGTGAGGAGGATTCTAATG 58.384 47.826 7.03 0.00 0.00 1.90
5062 6106 3.068873 GCGTCAGTGAGGAGGATTCTAAT 59.931 47.826 16.81 0.00 0.00 1.73
5063 6107 2.427453 GCGTCAGTGAGGAGGATTCTAA 59.573 50.000 16.81 0.00 0.00 2.10
5064 6108 2.025155 GCGTCAGTGAGGAGGATTCTA 58.975 52.381 16.81 0.00 0.00 2.10
5065 6109 0.820871 GCGTCAGTGAGGAGGATTCT 59.179 55.000 16.81 0.00 0.00 2.40
5066 6110 0.179097 GGCGTCAGTGAGGAGGATTC 60.179 60.000 16.81 0.00 0.00 2.52
5067 6111 0.904865 TGGCGTCAGTGAGGAGGATT 60.905 55.000 16.81 0.00 0.00 3.01
5068 6112 1.305297 TGGCGTCAGTGAGGAGGAT 60.305 57.895 16.81 0.00 0.00 3.24
5069 6113 1.979155 CTGGCGTCAGTGAGGAGGA 60.979 63.158 16.81 0.00 36.30 3.71
5070 6114 2.575993 CTGGCGTCAGTGAGGAGG 59.424 66.667 16.81 1.98 36.30 4.30
5071 6115 2.575993 CCTGGCGTCAGTGAGGAG 59.424 66.667 17.16 5.86 39.31 3.69
5072 6116 3.695606 GCCTGGCGTCAGTGAGGA 61.696 66.667 17.16 0.00 39.31 3.71
5083 6127 3.056328 GTGGAAACTCCGCCTGGC 61.056 66.667 9.11 9.11 41.08 4.85
5084 6128 2.742372 CGTGGAAACTCCGCCTGG 60.742 66.667 0.75 0.00 43.95 4.45
5085 6129 2.521958 ATCCGTGGAAACTCCGCCTG 62.522 60.000 0.00 0.00 43.95 4.85
5086 6130 2.240162 GATCCGTGGAAACTCCGCCT 62.240 60.000 0.00 0.00 43.95 5.52
5087 6131 1.814169 GATCCGTGGAAACTCCGCC 60.814 63.158 0.00 0.00 43.95 6.13
5088 6132 1.814169 GGATCCGTGGAAACTCCGC 60.814 63.158 0.00 0.00 43.41 5.54
5089 6133 0.179108 GAGGATCCGTGGAAACTCCG 60.179 60.000 5.98 0.00 40.17 4.63
5090 6134 0.902531 TGAGGATCCGTGGAAACTCC 59.097 55.000 5.98 9.09 36.96 3.85
5091 6135 1.275291 TGTGAGGATCCGTGGAAACTC 59.725 52.381 5.98 13.34 34.05 3.01
5092 6136 1.276421 CTGTGAGGATCCGTGGAAACT 59.724 52.381 5.98 0.00 0.00 2.66
5093 6137 1.002087 ACTGTGAGGATCCGTGGAAAC 59.998 52.381 5.98 0.65 0.00 2.78
5094 6138 1.348064 ACTGTGAGGATCCGTGGAAA 58.652 50.000 5.98 0.00 0.00 3.13
5095 6139 1.348064 AACTGTGAGGATCCGTGGAA 58.652 50.000 5.98 0.00 0.00 3.53
5096 6140 1.348064 AAACTGTGAGGATCCGTGGA 58.652 50.000 5.98 0.00 0.00 4.02
5097 6141 3.935993 AAACTGTGAGGATCCGTGG 57.064 52.632 5.98 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.