Multiple sequence alignment - TraesCS2D01G488200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G488200 chr2D 100.000 5707 0 0 1 5707 587702063 587696357 0.000000e+00 10539
1 TraesCS2D01G488200 chr2B 91.126 3020 149 57 2723 5677 710283398 710280433 0.000000e+00 3982
2 TraesCS2D01G488200 chr2B 89.934 1828 83 39 1 1778 710286119 710284343 0.000000e+00 2263
3 TraesCS2D01G488200 chr2B 85.442 838 91 18 1902 2721 710284339 710283515 0.000000e+00 843
4 TraesCS2D01G488200 chr2A 93.941 1832 83 14 1902 3722 722522140 722520326 0.000000e+00 2743
5 TraesCS2D01G488200 chr2A 88.287 2066 121 54 3668 5677 722520337 722518337 0.000000e+00 2362
6 TraesCS2D01G488200 chr2A 90.919 958 49 12 843 1778 722523085 722522144 0.000000e+00 1253
7 TraesCS2D01G488200 chr2A 90.833 720 44 13 1 700 722523928 722523211 0.000000e+00 944
8 TraesCS2D01G488200 chr2A 91.111 180 14 2 5265 5443 32967849 32967671 5.710000e-60 243
9 TraesCS2D01G488200 chr2A 90.984 122 5 2 5149 5270 32974267 32974152 5.920000e-35 159
10 TraesCS2D01G488200 chr4D 86.808 993 47 25 4514 5445 344372799 344373768 0.000000e+00 1031
11 TraesCS2D01G488200 chr3A 83.518 813 40 30 4698 5445 195451515 195452298 0.000000e+00 673
12 TraesCS2D01G488200 chr3A 98.315 178 3 0 4514 4691 195447429 195447606 4.290000e-81 313
13 TraesCS2D01G488200 chr7B 81.373 408 58 13 2025 2426 611719043 611718648 3.320000e-82 316
14 TraesCS2D01G488200 chr1D 97.987 149 3 0 4514 4662 2480514 2480366 5.670000e-65 259
15 TraesCS2D01G488200 chr7D 77.622 429 63 16 2025 2426 562121393 562120971 4.450000e-56 230
16 TraesCS2D01G488200 chr6B 90.351 114 6 5 1271 1380 424292566 424292678 1.660000e-30 145
17 TraesCS2D01G488200 chr6B 88.793 116 8 5 1269 1380 424069033 424069147 2.770000e-28 137
18 TraesCS2D01G488200 chrUn 86.957 115 7 5 1269 1379 401085934 401086044 7.770000e-24 122
19 TraesCS2D01G488200 chrUn 86.957 115 7 5 1269 1379 408002379 408002269 7.770000e-24 122
20 TraesCS2D01G488200 chrUn 86.957 115 7 5 1269 1379 446902183 446902293 7.770000e-24 122
21 TraesCS2D01G488200 chrUn 86.957 115 7 5 1269 1379 465860458 465860348 7.770000e-24 122
22 TraesCS2D01G488200 chr1B 86.957 115 7 5 1269 1379 628945837 628945727 7.770000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G488200 chr2D 587696357 587702063 5706 True 10539.000000 10539 100.0000 1 5707 1 chr2D.!!$R1 5706
1 TraesCS2D01G488200 chr2B 710280433 710286119 5686 True 2362.666667 3982 88.8340 1 5677 3 chr2B.!!$R1 5676
2 TraesCS2D01G488200 chr2A 722518337 722523928 5591 True 1825.500000 2743 90.9950 1 5677 4 chr2A.!!$R3 5676
3 TraesCS2D01G488200 chr4D 344372799 344373768 969 False 1031.000000 1031 86.8080 4514 5445 1 chr4D.!!$F1 931
4 TraesCS2D01G488200 chr3A 195447429 195452298 4869 False 493.000000 673 90.9165 4514 5445 2 chr3A.!!$F1 931

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 1063 1.002502 GTGGGGCCAGTTACACCTC 60.003 63.158 4.39 0.0 0.00 3.85 F
1456 1561 0.096976 CGCGGCTGTCGATTTGATTT 59.903 50.000 5.55 0.0 42.43 2.17 F
1919 2024 0.040958 GTGCAGTTCTCAACAAGCGG 60.041 55.000 0.00 0.0 37.46 5.52 F
1922 2027 0.868406 CAGTTCTCAACAAGCGGACC 59.132 55.000 0.00 0.0 0.00 4.46 F
2476 2584 1.497991 TTTCCTCGAACGTCAAGCTG 58.502 50.000 0.00 0.0 0.00 4.24 F
3009 3258 0.037160 TGTTTCGGAGGGGGTTAAGC 59.963 55.000 0.00 0.0 0.00 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1898 2003 0.040958 GCTTGTTGAGAACTGCACGG 60.041 55.000 0.00 0.0 33.88 4.94 R
2498 2606 0.320374 TGTAGGCGACTTCCCACAAG 59.680 55.000 0.00 0.0 43.67 3.16 R
2816 3065 0.530650 ACAGTTGAGTGGTCAGCACG 60.531 55.000 0.25 0.0 36.40 5.34 R
2819 3068 0.946221 CGGACAGTTGAGTGGTCAGC 60.946 60.000 0.00 0.0 32.98 4.26 R
4342 4649 1.228862 ATTTGGTTGCGGCCCTTCT 60.229 52.632 0.00 0.0 0.00 2.85 R
4879 9120 2.762887 CTCTAGCCTGTGAGGAATGACA 59.237 50.000 0.00 0.0 37.67 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.242076 GCAAGGTCAGTGTTGATGCT 58.758 50.000 0.00 0.00 35.15 3.79
53 54 1.694169 AGGCATCATCGGGAAGGGT 60.694 57.895 0.00 0.00 0.00 4.34
158 159 2.071778 TTGAGCTGGAAGGCAGTTTT 57.928 45.000 0.00 0.00 34.17 2.43
239 240 2.342279 CCGTCGAAGAACCCTGCA 59.658 61.111 0.00 0.00 39.69 4.41
434 444 3.002583 TGCTGCGGTGGATCCTCA 61.003 61.111 14.23 4.98 0.00 3.86
440 450 2.022240 GCGGTGGATCCTCACTCCTC 62.022 65.000 14.23 0.00 37.75 3.71
604 615 4.282703 TCCCAGTGTAGTTAGTCACCTTTC 59.717 45.833 0.00 0.00 35.45 2.62
625 642 5.514274 TCGAGTTTTCTCCTTGCATTTTT 57.486 34.783 0.00 0.00 43.49 1.94
626 643 6.627395 TCGAGTTTTCTCCTTGCATTTTTA 57.373 33.333 0.00 0.00 43.49 1.52
628 645 7.657336 TCGAGTTTTCTCCTTGCATTTTTATT 58.343 30.769 0.00 0.00 43.49 1.40
629 646 8.141268 TCGAGTTTTCTCCTTGCATTTTTATTT 58.859 29.630 0.00 0.00 43.49 1.40
635 652 2.095692 CCTTGCATTTTTATTTGGCGGC 59.904 45.455 0.00 0.00 0.00 6.53
693 717 2.286872 CAGCAGATGGGTCACTGATTC 58.713 52.381 0.00 0.00 34.49 2.52
701 725 2.038952 TGGGTCACTGATTCCTCTGTTG 59.961 50.000 3.88 0.00 31.84 3.33
707 731 5.350914 GTCACTGATTCCTCTGTTGATTCTG 59.649 44.000 0.00 0.00 31.84 3.02
713 737 6.213397 TGATTCCTCTGTTGATTCTGAGGTTA 59.787 38.462 15.46 8.55 46.53 2.85
740 764 8.870116 TGTTCTATGATGCTACATAATACACCT 58.130 33.333 5.32 0.00 33.26 4.00
743 767 8.674607 TCTATGATGCTACATAATACACCTACG 58.325 37.037 5.32 0.00 33.26 3.51
751 775 7.278424 GCTACATAATACACCTACGTTCCAAAA 59.722 37.037 0.00 0.00 0.00 2.44
752 776 9.321562 CTACATAATACACCTACGTTCCAAAAT 57.678 33.333 0.00 0.00 0.00 1.82
753 777 8.570068 ACATAATACACCTACGTTCCAAAATT 57.430 30.769 0.00 0.00 0.00 1.82
754 778 8.671028 ACATAATACACCTACGTTCCAAAATTC 58.329 33.333 0.00 0.00 0.00 2.17
755 779 6.505044 AATACACCTACGTTCCAAAATTCC 57.495 37.500 0.00 0.00 0.00 3.01
756 780 3.822940 ACACCTACGTTCCAAAATTCCA 58.177 40.909 0.00 0.00 0.00 3.53
757 781 4.208746 ACACCTACGTTCCAAAATTCCAA 58.791 39.130 0.00 0.00 0.00 3.53
758 782 4.645588 ACACCTACGTTCCAAAATTCCAAA 59.354 37.500 0.00 0.00 0.00 3.28
759 783 5.127356 ACACCTACGTTCCAAAATTCCAAAA 59.873 36.000 0.00 0.00 0.00 2.44
897 961 6.985188 TTGGTTGCTATTGTAGATCTTGAC 57.015 37.500 0.00 0.00 0.00 3.18
899 963 6.653020 TGGTTGCTATTGTAGATCTTGACAT 58.347 36.000 0.00 0.00 0.00 3.06
901 965 7.611467 TGGTTGCTATTGTAGATCTTGACATTT 59.389 33.333 0.00 0.00 0.00 2.32
990 1063 1.002502 GTGGGGCCAGTTACACCTC 60.003 63.158 4.39 0.00 0.00 3.85
1077 1150 0.453793 CCACGACATCTCGAGCTCTT 59.546 55.000 12.85 0.00 43.06 2.85
1078 1151 1.532921 CCACGACATCTCGAGCTCTTC 60.533 57.143 12.85 0.39 43.06 2.87
1079 1152 1.400142 CACGACATCTCGAGCTCTTCT 59.600 52.381 12.85 0.00 43.06 2.85
1080 1153 1.668751 ACGACATCTCGAGCTCTTCTC 59.331 52.381 12.85 0.00 43.06 2.87
1081 1154 1.002900 CGACATCTCGAGCTCTTCTCC 60.003 57.143 12.85 0.00 43.06 3.71
1082 1155 1.002900 GACATCTCGAGCTCTTCTCCG 60.003 57.143 12.85 0.00 38.62 4.63
1083 1156 0.317770 CATCTCGAGCTCTTCTCCGC 60.318 60.000 12.85 0.00 38.62 5.54
1084 1157 0.465460 ATCTCGAGCTCTTCTCCGCT 60.465 55.000 12.85 0.00 38.62 5.52
1085 1158 1.092921 TCTCGAGCTCTTCTCCGCTC 61.093 60.000 12.85 0.00 46.91 5.03
1453 1558 3.487202 GCGCGGCTGTCGATTTGA 61.487 61.111 8.83 0.00 42.43 2.69
1454 1559 2.813179 GCGCGGCTGTCGATTTGAT 61.813 57.895 8.83 0.00 42.43 2.57
1456 1561 0.096976 CGCGGCTGTCGATTTGATTT 59.903 50.000 5.55 0.00 42.43 2.17
1457 1562 1.815132 GCGGCTGTCGATTTGATTTC 58.185 50.000 5.55 0.00 42.43 2.17
1458 1563 1.852077 GCGGCTGTCGATTTGATTTCG 60.852 52.381 5.55 0.00 42.43 3.46
1459 1564 1.393539 CGGCTGTCGATTTGATTTCGT 59.606 47.619 0.00 0.00 42.43 3.85
1460 1565 2.159707 CGGCTGTCGATTTGATTTCGTT 60.160 45.455 0.00 0.00 42.43 3.85
1461 1566 3.061563 CGGCTGTCGATTTGATTTCGTTA 59.938 43.478 0.00 0.00 42.43 3.18
1462 1567 4.260212 CGGCTGTCGATTTGATTTCGTTAT 60.260 41.667 0.00 0.00 42.43 1.89
1463 1568 5.198274 GGCTGTCGATTTGATTTCGTTATC 58.802 41.667 0.00 0.00 37.82 1.75
1494 1599 3.372730 GCCAATTGTGCCCAGCGA 61.373 61.111 4.43 0.00 0.00 4.93
1501 1606 2.740055 GTGCCCAGCGACACTCAG 60.740 66.667 0.00 0.00 33.92 3.35
1528 1633 1.913403 CACCGCTTTCGATTTGATTGC 59.087 47.619 0.00 0.00 38.10 3.56
1575 1680 2.811873 GCCCACCGAATCATGAGCTTAT 60.812 50.000 0.09 0.00 0.00 1.73
1621 1726 1.523154 TTGGGTTCTGCATTCACGGC 61.523 55.000 0.00 0.00 0.00 5.68
1629 1734 0.391130 TGCATTCACGGCCTGAGTAC 60.391 55.000 0.00 0.00 0.00 2.73
1630 1735 0.108138 GCATTCACGGCCTGAGTACT 60.108 55.000 0.00 0.00 0.00 2.73
1686 1791 2.039084 AGGCTTCGAATCCTTTGTGAGT 59.961 45.455 14.77 0.00 0.00 3.41
1764 1869 1.152943 CCTCGATCCCACTCCTCGA 60.153 63.158 0.00 0.00 38.95 4.04
1770 1875 3.760035 CCCACTCCTCGACCCACG 61.760 72.222 0.00 0.00 44.09 4.94
1795 1900 6.062434 CGTAAGTGACTAAGTGCTATAGCT 57.938 41.667 24.61 8.18 42.66 3.32
1796 1901 5.910166 CGTAAGTGACTAAGTGCTATAGCTG 59.090 44.000 24.61 12.05 42.66 4.24
1797 1902 6.238402 CGTAAGTGACTAAGTGCTATAGCTGA 60.238 42.308 24.61 3.32 42.66 4.26
1798 1903 6.531503 AAGTGACTAAGTGCTATAGCTGAA 57.468 37.500 24.61 2.54 42.66 3.02
1799 1904 6.142818 AGTGACTAAGTGCTATAGCTGAAG 57.857 41.667 24.61 17.53 42.66 3.02
1800 1905 5.888724 AGTGACTAAGTGCTATAGCTGAAGA 59.111 40.000 24.61 1.75 42.66 2.87
1801 1906 6.378564 AGTGACTAAGTGCTATAGCTGAAGAA 59.621 38.462 24.61 0.98 42.66 2.52
1802 1907 7.036220 GTGACTAAGTGCTATAGCTGAAGAAA 58.964 38.462 24.61 0.21 42.66 2.52
1803 1908 7.221838 GTGACTAAGTGCTATAGCTGAAGAAAG 59.778 40.741 24.61 14.39 42.66 2.62
1804 1909 6.578023 ACTAAGTGCTATAGCTGAAGAAAGG 58.422 40.000 24.61 8.97 42.66 3.11
1805 1910 5.428184 AAGTGCTATAGCTGAAGAAAGGT 57.572 39.130 24.61 0.00 42.66 3.50
1806 1911 6.546428 AAGTGCTATAGCTGAAGAAAGGTA 57.454 37.500 24.61 0.00 42.66 3.08
1807 1912 6.739331 AGTGCTATAGCTGAAGAAAGGTAT 57.261 37.500 24.61 1.98 42.15 2.73
1808 1913 6.754193 AGTGCTATAGCTGAAGAAAGGTATC 58.246 40.000 24.61 0.00 40.44 2.24
1809 1914 6.325028 AGTGCTATAGCTGAAGAAAGGTATCA 59.675 38.462 24.61 0.00 40.44 2.15
1810 1915 7.016072 AGTGCTATAGCTGAAGAAAGGTATCAT 59.984 37.037 24.61 0.00 40.44 2.45
1811 1916 7.117523 GTGCTATAGCTGAAGAAAGGTATCATG 59.882 40.741 24.61 0.00 40.44 3.07
1812 1917 7.158021 GCTATAGCTGAAGAAAGGTATCATGT 58.842 38.462 17.75 0.00 40.44 3.21
1813 1918 7.117523 GCTATAGCTGAAGAAAGGTATCATGTG 59.882 40.741 17.75 0.00 40.44 3.21
1814 1919 5.171339 AGCTGAAGAAAGGTATCATGTGT 57.829 39.130 0.00 0.00 0.00 3.72
1815 1920 5.564550 AGCTGAAGAAAGGTATCATGTGTT 58.435 37.500 0.00 0.00 0.00 3.32
1816 1921 5.413833 AGCTGAAGAAAGGTATCATGTGTTG 59.586 40.000 0.00 0.00 0.00 3.33
1817 1922 5.182001 GCTGAAGAAAGGTATCATGTGTTGT 59.818 40.000 0.00 0.00 0.00 3.32
1818 1923 6.558771 TGAAGAAAGGTATCATGTGTTGTG 57.441 37.500 0.00 0.00 0.00 3.33
1819 1924 5.473162 TGAAGAAAGGTATCATGTGTTGTGG 59.527 40.000 0.00 0.00 0.00 4.17
1820 1925 3.758554 AGAAAGGTATCATGTGTTGTGGC 59.241 43.478 0.00 0.00 0.00 5.01
1821 1926 3.439857 AAGGTATCATGTGTTGTGGCT 57.560 42.857 0.00 0.00 0.00 4.75
1822 1927 3.439857 AGGTATCATGTGTTGTGGCTT 57.560 42.857 0.00 0.00 0.00 4.35
1823 1928 4.568072 AGGTATCATGTGTTGTGGCTTA 57.432 40.909 0.00 0.00 0.00 3.09
1824 1929 5.116084 AGGTATCATGTGTTGTGGCTTAT 57.884 39.130 0.00 0.00 0.00 1.73
1825 1930 5.509498 AGGTATCATGTGTTGTGGCTTATT 58.491 37.500 0.00 0.00 0.00 1.40
1826 1931 5.951747 AGGTATCATGTGTTGTGGCTTATTT 59.048 36.000 0.00 0.00 0.00 1.40
1827 1932 6.035843 GGTATCATGTGTTGTGGCTTATTTG 58.964 40.000 0.00 0.00 0.00 2.32
1828 1933 5.981088 ATCATGTGTTGTGGCTTATTTGA 57.019 34.783 0.00 0.00 0.00 2.69
1829 1934 5.375417 TCATGTGTTGTGGCTTATTTGAG 57.625 39.130 0.00 0.00 0.00 3.02
1830 1935 4.826733 TCATGTGTTGTGGCTTATTTGAGT 59.173 37.500 0.00 0.00 0.00 3.41
1831 1936 6.000840 TCATGTGTTGTGGCTTATTTGAGTA 58.999 36.000 0.00 0.00 0.00 2.59
1832 1937 5.940192 TGTGTTGTGGCTTATTTGAGTAG 57.060 39.130 0.00 0.00 0.00 2.57
1833 1938 4.215399 TGTGTTGTGGCTTATTTGAGTAGC 59.785 41.667 0.00 0.00 0.00 3.58
1834 1939 4.455877 GTGTTGTGGCTTATTTGAGTAGCT 59.544 41.667 0.00 0.00 35.30 3.32
1835 1940 5.048713 GTGTTGTGGCTTATTTGAGTAGCTT 60.049 40.000 0.00 0.00 35.30 3.74
1836 1941 5.181245 TGTTGTGGCTTATTTGAGTAGCTTC 59.819 40.000 0.00 0.00 35.30 3.86
1837 1942 4.261801 TGTGGCTTATTTGAGTAGCTTCC 58.738 43.478 0.00 0.00 35.30 3.46
1838 1943 4.261801 GTGGCTTATTTGAGTAGCTTCCA 58.738 43.478 0.00 0.00 35.30 3.53
1839 1944 4.095036 GTGGCTTATTTGAGTAGCTTCCAC 59.905 45.833 0.00 0.00 35.30 4.02
1840 1945 4.261801 GGCTTATTTGAGTAGCTTCCACA 58.738 43.478 0.00 0.00 35.30 4.17
1841 1946 4.700213 GGCTTATTTGAGTAGCTTCCACAA 59.300 41.667 0.00 0.00 35.30 3.33
1842 1947 5.392057 GGCTTATTTGAGTAGCTTCCACAAC 60.392 44.000 0.00 0.00 35.30 3.32
1843 1948 5.181245 GCTTATTTGAGTAGCTTCCACAACA 59.819 40.000 0.00 0.00 32.26 3.33
1844 1949 6.621596 GCTTATTTGAGTAGCTTCCACAACAG 60.622 42.308 0.00 0.00 32.26 3.16
1845 1950 2.169832 TGAGTAGCTTCCACAACAGC 57.830 50.000 0.00 0.00 36.16 4.40
1846 1951 1.071605 GAGTAGCTTCCACAACAGCG 58.928 55.000 0.00 0.00 41.24 5.18
1847 1952 0.951040 AGTAGCTTCCACAACAGCGC 60.951 55.000 0.00 0.00 41.24 5.92
1848 1953 1.070615 TAGCTTCCACAACAGCGCA 59.929 52.632 11.47 0.00 41.24 6.09
1849 1954 0.950555 TAGCTTCCACAACAGCGCAG 60.951 55.000 11.47 3.33 41.24 5.18
1850 1955 2.253758 GCTTCCACAACAGCGCAGA 61.254 57.895 11.47 0.00 0.00 4.26
1851 1956 1.785041 GCTTCCACAACAGCGCAGAA 61.785 55.000 11.47 0.00 0.00 3.02
1852 1957 0.236711 CTTCCACAACAGCGCAGAAG 59.763 55.000 11.47 6.17 0.00 2.85
1853 1958 0.463654 TTCCACAACAGCGCAGAAGT 60.464 50.000 11.47 2.82 0.00 3.01
1854 1959 0.463654 TCCACAACAGCGCAGAAGTT 60.464 50.000 11.47 5.91 0.00 2.66
1855 1960 0.381801 CCACAACAGCGCAGAAGTTT 59.618 50.000 11.47 0.00 0.00 2.66
1856 1961 1.601903 CCACAACAGCGCAGAAGTTTA 59.398 47.619 11.47 0.00 0.00 2.01
1857 1962 2.032799 CCACAACAGCGCAGAAGTTTAA 59.967 45.455 11.47 0.00 0.00 1.52
1858 1963 3.488384 CCACAACAGCGCAGAAGTTTAAA 60.488 43.478 11.47 0.00 0.00 1.52
1859 1964 3.725740 CACAACAGCGCAGAAGTTTAAAG 59.274 43.478 11.47 0.00 0.00 1.85
1860 1965 3.243068 ACAACAGCGCAGAAGTTTAAAGG 60.243 43.478 11.47 0.00 0.00 3.11
1861 1966 1.880027 ACAGCGCAGAAGTTTAAAGGG 59.120 47.619 11.47 0.00 0.00 3.95
1862 1967 1.880027 CAGCGCAGAAGTTTAAAGGGT 59.120 47.619 11.47 0.00 0.00 4.34
1863 1968 1.880027 AGCGCAGAAGTTTAAAGGGTG 59.120 47.619 11.47 0.00 0.00 4.61
1864 1969 1.068541 GCGCAGAAGTTTAAAGGGTGG 60.069 52.381 0.30 0.00 0.00 4.61
1865 1970 1.068541 CGCAGAAGTTTAAAGGGTGGC 60.069 52.381 0.00 0.00 0.00 5.01
1866 1971 1.960689 GCAGAAGTTTAAAGGGTGGCA 59.039 47.619 0.00 0.00 0.00 4.92
1867 1972 2.288213 GCAGAAGTTTAAAGGGTGGCAC 60.288 50.000 9.70 9.70 0.00 5.01
1868 1973 3.222603 CAGAAGTTTAAAGGGTGGCACT 58.777 45.455 18.45 0.00 0.00 4.40
1869 1974 4.394729 CAGAAGTTTAAAGGGTGGCACTA 58.605 43.478 18.45 0.00 0.00 2.74
1870 1975 4.825085 CAGAAGTTTAAAGGGTGGCACTAA 59.175 41.667 18.45 5.27 0.00 2.24
1871 1976 5.476945 CAGAAGTTTAAAGGGTGGCACTAAT 59.523 40.000 18.45 4.41 0.00 1.73
1872 1977 6.015434 CAGAAGTTTAAAGGGTGGCACTAATT 60.015 38.462 18.45 11.82 0.00 1.40
1873 1978 7.175990 CAGAAGTTTAAAGGGTGGCACTAATTA 59.824 37.037 18.45 10.87 0.00 1.40
1874 1979 7.726738 AGAAGTTTAAAGGGTGGCACTAATTAA 59.273 33.333 18.45 15.63 0.00 1.40
1875 1980 8.430573 AAGTTTAAAGGGTGGCACTAATTAAT 57.569 30.769 18.45 4.28 0.00 1.40
1876 1981 7.836842 AGTTTAAAGGGTGGCACTAATTAATG 58.163 34.615 18.45 0.00 0.00 1.90
1877 1982 6.783708 TTAAAGGGTGGCACTAATTAATGG 57.216 37.500 18.45 0.00 0.00 3.16
1878 1983 4.601406 AAGGGTGGCACTAATTAATGGA 57.399 40.909 18.45 0.00 0.00 3.41
1879 1984 4.601406 AGGGTGGCACTAATTAATGGAA 57.399 40.909 18.45 0.00 0.00 3.53
1880 1985 5.142806 AGGGTGGCACTAATTAATGGAAT 57.857 39.130 18.45 0.00 0.00 3.01
1881 1986 5.528337 AGGGTGGCACTAATTAATGGAATT 58.472 37.500 18.45 0.00 40.90 2.17
1882 1987 5.963865 AGGGTGGCACTAATTAATGGAATTT 59.036 36.000 18.45 0.00 38.70 1.82
1883 1988 6.098266 AGGGTGGCACTAATTAATGGAATTTC 59.902 38.462 18.45 0.00 38.70 2.17
1884 1989 6.098266 GGGTGGCACTAATTAATGGAATTTCT 59.902 38.462 18.45 0.00 38.70 2.52
1885 1990 7.286775 GGGTGGCACTAATTAATGGAATTTCTA 59.713 37.037 18.45 0.00 38.70 2.10
1886 1991 8.860088 GGTGGCACTAATTAATGGAATTTCTAT 58.140 33.333 18.45 0.00 38.70 1.98
1887 1992 9.899226 GTGGCACTAATTAATGGAATTTCTATC 57.101 33.333 11.13 0.00 38.70 2.08
1888 1993 9.639563 TGGCACTAATTAATGGAATTTCTATCA 57.360 29.630 0.00 0.00 38.70 2.15
1896 2001 8.766994 TTAATGGAATTTCTATCAAGAAGGGG 57.233 34.615 0.00 0.00 42.60 4.79
1897 2002 5.796502 TGGAATTTCTATCAAGAAGGGGT 57.203 39.130 0.00 0.00 42.60 4.95
1898 2003 5.755849 TGGAATTTCTATCAAGAAGGGGTC 58.244 41.667 0.00 0.00 42.60 4.46
1899 2004 5.133941 GGAATTTCTATCAAGAAGGGGTCC 58.866 45.833 0.00 0.00 42.60 4.46
1900 2005 3.906720 TTTCTATCAAGAAGGGGTCCG 57.093 47.619 0.00 0.00 42.60 4.79
1918 2023 0.383491 CGTGCAGTTCTCAACAAGCG 60.383 55.000 0.00 0.00 37.46 4.68
1919 2024 0.040958 GTGCAGTTCTCAACAAGCGG 60.041 55.000 0.00 0.00 37.46 5.52
1922 2027 0.868406 CAGTTCTCAACAAGCGGACC 59.132 55.000 0.00 0.00 0.00 4.46
1937 2042 4.780815 AGCGGACCATCATCAAAATAAGA 58.219 39.130 0.00 0.00 0.00 2.10
1939 2044 5.471456 AGCGGACCATCATCAAAATAAGATC 59.529 40.000 0.00 0.00 0.00 2.75
1942 2047 7.522725 GCGGACCATCATCAAAATAAGATCAAT 60.523 37.037 0.00 0.00 0.00 2.57
1991 2096 7.050377 GGAACTAATCACTTCCATTCATCTCA 58.950 38.462 0.00 0.00 36.66 3.27
1998 2103 5.713389 TCACTTCCATTCATCTCAGCATTTT 59.287 36.000 0.00 0.00 0.00 1.82
2005 2110 4.870221 TCATCTCAGCATTTTCATGTCG 57.130 40.909 0.00 0.00 32.28 4.35
2011 2116 5.990996 TCTCAGCATTTTCATGTCGCATATA 59.009 36.000 0.00 0.00 32.28 0.86
2042 2148 8.501070 AGGAACTCCATCATCTCTGATTAAAAT 58.499 33.333 0.00 0.00 40.20 1.82
2084 2190 9.705290 ACATTTTGTTGGTCCTTATTCATTAAC 57.295 29.630 0.00 0.00 0.00 2.01
2086 2192 6.503589 TTGTTGGTCCTTATTCATTAACCG 57.496 37.500 0.00 0.00 0.00 4.44
2091 2197 5.761234 TGGTCCTTATTCATTAACCGTATGC 59.239 40.000 0.00 0.00 0.00 3.14
2096 2202 7.936847 TCCTTATTCATTAACCGTATGCTTCAT 59.063 33.333 0.00 0.00 0.00 2.57
2476 2584 1.497991 TTTCCTCGAACGTCAAGCTG 58.502 50.000 0.00 0.00 0.00 4.24
2498 2606 7.593644 AGCTGTTGAATACGGTAATTTCAAAAC 59.406 33.333 15.00 8.19 40.08 2.43
2505 2613 4.939271 ACGGTAATTTCAAAACTTGTGGG 58.061 39.130 0.00 0.00 0.00 4.61
2540 2648 2.607771 CCCTTGTGCGTTTTTGGATCTG 60.608 50.000 0.00 0.00 0.00 2.90
2541 2649 2.053627 CTTGTGCGTTTTTGGATCTGC 58.946 47.619 0.00 0.00 0.00 4.26
2570 2678 5.156355 CAACTACCTCATGTTTGCAATGTC 58.844 41.667 0.00 0.00 0.00 3.06
2662 2791 3.693085 AGCTCTTGTAATGTGGCAAGATG 59.307 43.478 7.33 4.27 46.52 2.90
2729 2858 4.809193 TCTGTCTTATCCAGGAGCTGTAT 58.191 43.478 0.00 0.00 0.00 2.29
2730 2859 5.953571 TCTGTCTTATCCAGGAGCTGTATA 58.046 41.667 0.00 0.00 0.00 1.47
2731 2860 6.556639 TCTGTCTTATCCAGGAGCTGTATAT 58.443 40.000 0.00 0.00 0.00 0.86
2742 2985 8.321353 TCCAGGAGCTGTATATTTTGTATATGG 58.679 37.037 0.00 0.00 0.00 2.74
2762 3007 2.545742 GGCCATGTTGTTCTGTTGTTCC 60.546 50.000 0.00 0.00 0.00 3.62
2763 3008 2.100584 GCCATGTTGTTCTGTTGTTCCA 59.899 45.455 0.00 0.00 0.00 3.53
2764 3009 3.243839 GCCATGTTGTTCTGTTGTTCCAT 60.244 43.478 0.00 0.00 0.00 3.41
2765 3010 4.740334 GCCATGTTGTTCTGTTGTTCCATT 60.740 41.667 0.00 0.00 0.00 3.16
2783 3032 3.129287 CCATTCATGCCTCACAGTTTACC 59.871 47.826 0.00 0.00 0.00 2.85
2816 3065 7.751732 TGTGTATGCAGATACAAAACAGATTC 58.248 34.615 8.57 0.00 44.85 2.52
2819 3068 5.281693 TGCAGATACAAAACAGATTCGTG 57.718 39.130 0.00 0.00 0.00 4.35
2891 3140 2.031157 CGTCGAGGCATTTTTGGAAACT 60.031 45.455 0.00 0.00 0.00 2.66
3009 3258 0.037160 TGTTTCGGAGGGGGTTAAGC 59.963 55.000 0.00 0.00 0.00 3.09
3044 3293 8.978472 AGTAAGTACATAAGGCTTGATTACTGA 58.022 33.333 10.69 3.75 31.63 3.41
3045 3294 9.032420 GTAAGTACATAAGGCTTGATTACTGAC 57.968 37.037 10.69 11.71 0.00 3.51
3047 3296 5.700402 ACATAAGGCTTGATTACTGACCT 57.300 39.130 10.69 0.00 0.00 3.85
3048 3297 6.067217 ACATAAGGCTTGATTACTGACCTT 57.933 37.500 10.69 0.00 40.49 3.50
3074 3323 7.230849 TCTTGTTATTGCATCACTTTTCCAT 57.769 32.000 0.00 0.00 0.00 3.41
3111 3360 3.005261 ACTGCCAATTCATACAACGCAAA 59.995 39.130 0.00 0.00 0.00 3.68
3232 3483 4.502087 GGAATGCTGCCTTTTGTTTCTTCT 60.502 41.667 0.00 0.00 0.00 2.85
3260 3511 4.163441 TGACTTCCAACCATGACAAGAA 57.837 40.909 0.00 0.00 0.00 2.52
3339 3590 5.181811 TGTCCATCTGCAATACTTTTGTCTG 59.818 40.000 0.00 0.00 0.00 3.51
3749 4055 6.019801 CGCTTGAGTTGTACCATATGTCTTAC 60.020 42.308 1.24 1.26 0.00 2.34
3750 4056 7.042335 GCTTGAGTTGTACCATATGTCTTACT 58.958 38.462 1.24 0.00 0.00 2.24
3751 4057 8.195436 GCTTGAGTTGTACCATATGTCTTACTA 58.805 37.037 1.24 0.00 0.00 1.82
3766 4072 6.811954 TGTCTTACTAAGTGTCACATGTTGA 58.188 36.000 5.62 0.00 0.00 3.18
3825 4131 8.553459 AGAAAACATACCTGATTCTGTACTTG 57.447 34.615 0.00 0.00 33.74 3.16
3828 4134 2.789409 ACCTGATTCTGTACTTGGCC 57.211 50.000 0.00 0.00 0.00 5.36
3840 4146 4.411927 TGTACTTGGCCCATAAACACATT 58.588 39.130 0.00 0.00 0.00 2.71
3844 4150 7.834681 TGTACTTGGCCCATAAACACATTAATA 59.165 33.333 0.00 0.00 0.00 0.98
3893 4199 1.610038 TGAGTTTGAATGCTGCACAGG 59.390 47.619 3.57 0.00 0.00 4.00
3943 4249 5.044550 AGTGGAAATGAAGGCTCTTAATCCT 60.045 40.000 9.19 0.00 0.00 3.24
3993 4299 2.866762 GAGAATGTTGAGCATCCCGTAC 59.133 50.000 0.00 0.00 36.67 3.67
4261 4568 6.715264 ACAGTATTTTGGAAGGATCGAAAAGT 59.285 34.615 0.00 0.00 43.48 2.66
4263 4570 5.296813 ATTTTGGAAGGATCGAAAAGTCG 57.703 39.130 0.00 0.00 43.48 4.18
4342 4649 4.641396 CACCTGATGTCCTGACAAAACTA 58.359 43.478 3.79 0.00 45.41 2.24
4390 4697 2.586258 ACACGCCAGATGTAGTGATC 57.414 50.000 10.54 0.00 37.95 2.92
4393 4700 0.034059 CGCCAGATGTAGTGATCCCC 59.966 60.000 0.00 0.00 0.00 4.81
4421 4728 2.362077 CAAAGCTAGTGTTTGGGCACTT 59.638 45.455 4.01 0.00 46.45 3.16
4448 4755 5.180492 CGGAGCACTATGGTTAACTTTTTCA 59.820 40.000 5.42 0.00 0.00 2.69
4468 4775 9.613428 TTTTTCAGAGATGTCTTTTCTGTCTTA 57.387 29.630 6.27 0.00 39.41 2.10
4472 4779 6.367422 CAGAGATGTCTTTTCTGTCTTACCAC 59.633 42.308 0.00 0.00 34.92 4.16
4486 4793 4.885325 GTCTTACCACTTTCCAGGTTTTCA 59.115 41.667 0.00 0.00 39.31 2.69
4728 8943 4.620982 GCAAATGACACCAAAGTTAGCTT 58.379 39.130 0.00 0.00 36.30 3.74
4760 8975 6.839124 ATCTCAAATACAAACATCCAGCAA 57.161 33.333 0.00 0.00 0.00 3.91
4783 8998 6.009908 AGAAGATGAAATGTGGATCATGGA 57.990 37.500 0.00 0.00 36.45 3.41
5035 9292 0.687354 CTGCACCTAACCACTCCTGT 59.313 55.000 0.00 0.00 0.00 4.00
5036 9293 0.685097 TGCACCTAACCACTCCTGTC 59.315 55.000 0.00 0.00 0.00 3.51
5037 9294 0.036294 GCACCTAACCACTCCTGTCC 60.036 60.000 0.00 0.00 0.00 4.02
5038 9295 1.645710 CACCTAACCACTCCTGTCCT 58.354 55.000 0.00 0.00 0.00 3.85
5039 9296 1.276421 CACCTAACCACTCCTGTCCTG 59.724 57.143 0.00 0.00 0.00 3.86
5056 9313 2.666190 GACAGGCTGACGCTGCAA 60.666 61.111 23.66 0.00 36.09 4.08
5105 9375 1.128136 CAGTTCAGTTCAGAGCATGCG 59.872 52.381 13.01 0.00 0.00 4.73
5109 9379 1.744368 AGTTCAGAGCATGCGCCTG 60.744 57.895 26.73 26.73 39.83 4.85
5113 9383 3.473647 AGAGCATGCGCCTGCCTA 61.474 61.111 30.22 0.00 43.33 3.93
5116 9386 2.281345 GCATGCGCCTGCCTATCT 60.281 61.111 24.98 0.00 41.78 1.98
5119 9389 0.605083 CATGCGCCTGCCTATCTCTA 59.395 55.000 4.18 0.00 41.78 2.43
5128 9398 4.827284 GCCTGCCTATCTCTATCTCTATCC 59.173 50.000 0.00 0.00 0.00 2.59
5130 9400 5.103728 CCTGCCTATCTCTATCTCTATCCCA 60.104 48.000 0.00 0.00 0.00 4.37
5131 9401 6.012337 TGCCTATCTCTATCTCTATCCCAG 57.988 45.833 0.00 0.00 0.00 4.45
5132 9402 5.733647 TGCCTATCTCTATCTCTATCCCAGA 59.266 44.000 0.00 0.00 0.00 3.86
5133 9403 6.218522 TGCCTATCTCTATCTCTATCCCAGAA 59.781 42.308 0.00 0.00 31.12 3.02
5134 9404 6.772716 GCCTATCTCTATCTCTATCCCAGAAG 59.227 46.154 0.00 0.00 31.12 2.85
5136 9406 7.993183 CCTATCTCTATCTCTATCCCAGAAGAC 59.007 44.444 0.00 0.00 31.12 3.01
5137 9407 5.800296 TCTCTATCTCTATCCCAGAAGACG 58.200 45.833 0.00 0.00 31.12 4.18
5138 9408 5.544562 TCTCTATCTCTATCCCAGAAGACGA 59.455 44.000 0.00 0.00 31.12 4.20
5139 9409 6.043358 TCTCTATCTCTATCCCAGAAGACGAA 59.957 42.308 0.00 0.00 31.12 3.85
5143 9438 5.262009 TCTCTATCCCAGAAGACGAAAAGA 58.738 41.667 0.00 0.00 31.12 2.52
5146 9441 6.765403 TCTATCCCAGAAGACGAAAAGAAAA 58.235 36.000 0.00 0.00 0.00 2.29
5147 9442 5.690997 ATCCCAGAAGACGAAAAGAAAAC 57.309 39.130 0.00 0.00 0.00 2.43
5161 9456 6.533367 CGAAAAGAAAACAAGGTTGGAATCAA 59.467 34.615 0.00 0.00 0.00 2.57
5174 9469 1.622811 GGAATCAAACACCCAATGCCA 59.377 47.619 0.00 0.00 0.00 4.92
5177 9472 2.006805 TCAAACACCCAATGCCATCA 57.993 45.000 0.00 0.00 0.00 3.07
5196 9491 6.705825 GCCATCAAAACAACCAAACTAATCTT 59.294 34.615 0.00 0.00 0.00 2.40
5197 9492 7.307337 GCCATCAAAACAACCAAACTAATCTTG 60.307 37.037 0.00 0.00 0.00 3.02
5205 9500 6.183360 ACAACCAAACTAATCTTGCATTTCCA 60.183 34.615 0.00 0.00 0.00 3.53
5206 9501 6.610075 ACCAAACTAATCTTGCATTTCCAT 57.390 33.333 0.00 0.00 0.00 3.41
5207 9502 7.008021 ACCAAACTAATCTTGCATTTCCATT 57.992 32.000 0.00 0.00 0.00 3.16
5208 9503 7.099120 ACCAAACTAATCTTGCATTTCCATTC 58.901 34.615 0.00 0.00 0.00 2.67
5209 9504 6.536224 CCAAACTAATCTTGCATTTCCATTCC 59.464 38.462 0.00 0.00 0.00 3.01
5351 9658 3.101428 CGAACCGAACCGTCACCG 61.101 66.667 0.00 0.00 0.00 4.94
5412 9720 0.035458 CTTAGCTCTAATGGGGGCGG 59.965 60.000 0.00 0.00 0.00 6.13
5540 9848 2.687566 AACCCTTCCTCCGGCGAT 60.688 61.111 9.30 0.00 0.00 4.58
5680 9994 3.744719 CGAAGACTCGGCCGACCA 61.745 66.667 27.28 3.73 41.57 4.02
5681 9995 2.126031 GAAGACTCGGCCGACCAC 60.126 66.667 27.28 17.88 34.57 4.16
5682 9996 3.966026 GAAGACTCGGCCGACCACG 62.966 68.421 27.28 17.74 39.43 4.94
5684 9998 4.773117 GACTCGGCCGACCACGAC 62.773 72.222 27.28 11.48 42.66 4.34
5690 10004 4.773117 GCCGACCACGACGAGGAC 62.773 72.222 18.62 10.92 42.66 3.85
5691 10005 4.456253 CCGACCACGACGAGGACG 62.456 72.222 23.83 23.83 42.47 4.79
5692 10006 3.417224 CGACCACGACGAGGACGA 61.417 66.667 25.77 0.00 44.91 4.20
5693 10007 2.175322 GACCACGACGAGGACGAC 59.825 66.667 18.62 3.09 42.66 4.34
5699 10013 3.091529 GACGAGGACGACGAGGAG 58.908 66.667 0.00 0.00 42.66 3.69
5700 10014 2.436292 ACGAGGACGACGAGGAGG 60.436 66.667 0.00 0.00 42.66 4.30
5701 10015 2.125229 CGAGGACGACGAGGAGGA 60.125 66.667 0.00 0.00 42.66 3.71
5702 10016 2.462782 CGAGGACGACGAGGAGGAC 61.463 68.421 0.00 0.00 42.66 3.85
5703 10017 2.045143 AGGACGACGAGGAGGACC 60.045 66.667 0.00 0.00 0.00 4.46
5704 10018 3.139469 GGACGACGAGGAGGACCC 61.139 72.222 0.00 0.00 36.73 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.015145 ACCCCACCCTTCCCGATG 61.015 66.667 0.00 0.00 0.00 3.84
53 54 1.227823 CTGCTTCGTGTTGACCCCA 60.228 57.895 0.00 0.00 0.00 4.96
158 159 2.819608 GTTGGCTTGCTTTATCTGGTCA 59.180 45.455 0.00 0.00 0.00 4.02
434 444 0.610687 GTAGCAGCACAAGGAGGAGT 59.389 55.000 0.00 0.00 0.00 3.85
440 450 1.151668 GTCACAGTAGCAGCACAAGG 58.848 55.000 0.00 0.00 0.00 3.61
557 567 2.289002 ACAGCAAGAAAGTTCTGAAGCG 59.711 45.455 0.00 0.83 37.65 4.68
604 615 7.873739 AATAAAAATGCAAGGAGAAAACTCG 57.126 32.000 0.00 0.00 0.00 4.18
625 642 0.607762 TGTGAAGCAGCCGCCAAATA 60.608 50.000 0.00 0.00 39.83 1.40
626 643 1.870055 CTGTGAAGCAGCCGCCAAAT 61.870 55.000 0.00 0.00 38.52 2.32
628 645 2.979676 CTGTGAAGCAGCCGCCAA 60.980 61.111 0.00 0.00 38.52 4.52
649 673 5.240623 GTCAACACAACTGGATAATCACCAA 59.759 40.000 0.00 0.00 36.95 3.67
701 725 7.877097 AGCATCATAGAACATAACCTCAGAATC 59.123 37.037 0.00 0.00 0.00 2.52
707 731 9.929180 TTATGTAGCATCATAGAACATAACCTC 57.071 33.333 0.00 0.00 37.83 3.85
713 737 9.658799 GGTGTATTATGTAGCATCATAGAACAT 57.341 33.333 14.29 0.00 33.61 2.71
990 1063 1.202313 GGAGAGAGAAATGACCGTCGG 60.202 57.143 10.48 10.48 0.00 4.79
1077 1150 0.106918 GGAGGAGAGAAGAGCGGAGA 60.107 60.000 0.00 0.00 0.00 3.71
1078 1151 1.106944 GGGAGGAGAGAAGAGCGGAG 61.107 65.000 0.00 0.00 0.00 4.63
1079 1152 1.076632 GGGAGGAGAGAAGAGCGGA 60.077 63.158 0.00 0.00 0.00 5.54
1080 1153 2.131067 GGGGAGGAGAGAAGAGCGG 61.131 68.421 0.00 0.00 0.00 5.52
1081 1154 1.076339 AGGGGAGGAGAGAAGAGCG 60.076 63.158 0.00 0.00 0.00 5.03
1082 1155 1.106944 CGAGGGGAGGAGAGAAGAGC 61.107 65.000 0.00 0.00 0.00 4.09
1083 1156 0.467290 CCGAGGGGAGGAGAGAAGAG 60.467 65.000 0.00 0.00 34.06 2.85
1084 1157 1.615814 CCGAGGGGAGGAGAGAAGA 59.384 63.158 0.00 0.00 34.06 2.87
1085 1158 2.131067 GCCGAGGGGAGGAGAGAAG 61.131 68.421 0.00 0.00 34.06 2.85
1086 1159 2.042843 GCCGAGGGGAGGAGAGAA 60.043 66.667 0.00 0.00 34.06 2.87
1338 1435 2.285743 AACAGGAGAGGGGGAGGC 60.286 66.667 0.00 0.00 0.00 4.70
1438 1543 1.815132 GAAATCAAATCGACAGCCGC 58.185 50.000 0.00 0.00 38.37 6.53
1439 1544 1.393539 ACGAAATCAAATCGACAGCCG 59.606 47.619 2.65 0.00 42.76 5.52
1440 1545 3.471495 AACGAAATCAAATCGACAGCC 57.529 42.857 2.65 0.00 42.76 4.85
1453 1558 8.398665 GGCTTATTGAGAAACTGATAACGAAAT 58.601 33.333 0.00 0.00 0.00 2.17
1454 1559 7.389330 TGGCTTATTGAGAAACTGATAACGAAA 59.611 33.333 0.00 0.00 0.00 3.46
1456 1561 6.403049 TGGCTTATTGAGAAACTGATAACGA 58.597 36.000 0.00 0.00 0.00 3.85
1457 1562 6.662414 TGGCTTATTGAGAAACTGATAACG 57.338 37.500 0.00 0.00 0.00 3.18
1458 1563 9.294030 CAATTGGCTTATTGAGAAACTGATAAC 57.706 33.333 0.00 0.00 37.65 1.89
1459 1564 9.023962 ACAATTGGCTTATTGAGAAACTGATAA 57.976 29.630 10.83 0.00 38.56 1.75
1460 1565 8.461222 CACAATTGGCTTATTGAGAAACTGATA 58.539 33.333 10.83 0.00 38.56 2.15
1461 1566 7.318141 CACAATTGGCTTATTGAGAAACTGAT 58.682 34.615 10.83 0.00 38.56 2.90
1462 1567 6.680810 CACAATTGGCTTATTGAGAAACTGA 58.319 36.000 10.83 0.00 38.56 3.41
1463 1568 5.346822 GCACAATTGGCTTATTGAGAAACTG 59.653 40.000 10.83 7.04 38.56 3.16
1494 1599 0.100503 GCGGTGCAAAAACTGAGTGT 59.899 50.000 0.00 0.00 0.00 3.55
1501 1606 1.766069 ATCGAAAGCGGTGCAAAAAC 58.234 45.000 0.00 0.00 38.28 2.43
1575 1680 3.106242 ACATGCAGACACGAACACTAA 57.894 42.857 0.00 0.00 0.00 2.24
1621 1726 3.003480 GGCAGCAGTTTAAGTACTCAGG 58.997 50.000 0.00 0.00 0.00 3.86
1629 1734 3.256631 ACTGAAATGGGCAGCAGTTTAAG 59.743 43.478 0.00 0.00 38.34 1.85
1630 1735 3.230134 ACTGAAATGGGCAGCAGTTTAA 58.770 40.909 0.00 0.00 38.34 1.52
1686 1791 1.296392 CATCTCCGTGGTCTTGCCA 59.704 57.895 0.00 0.00 46.95 4.92
1750 1855 1.381327 TGGGTCGAGGAGTGGGATC 60.381 63.158 0.00 0.00 0.00 3.36
1752 1857 2.283676 GTGGGTCGAGGAGTGGGA 60.284 66.667 0.00 0.00 0.00 4.37
1764 1869 1.896220 TAGTCACTTACGTCGTGGGT 58.104 50.000 8.47 3.68 33.31 4.51
1770 1875 5.908499 GCTATAGCACTTAGTCACTTACGTC 59.092 44.000 20.01 0.00 41.59 4.34
1778 1883 6.775594 TTCTTCAGCTATAGCACTTAGTCA 57.224 37.500 26.07 6.98 45.16 3.41
1780 1885 6.155393 ACCTTTCTTCAGCTATAGCACTTAGT 59.845 38.462 26.07 8.78 45.16 2.24
1781 1886 6.578023 ACCTTTCTTCAGCTATAGCACTTAG 58.422 40.000 26.07 16.24 45.16 2.18
1782 1887 6.546428 ACCTTTCTTCAGCTATAGCACTTA 57.454 37.500 26.07 7.91 45.16 2.24
1783 1888 5.428184 ACCTTTCTTCAGCTATAGCACTT 57.572 39.130 26.07 3.14 45.16 3.16
1784 1889 6.325028 TGATACCTTTCTTCAGCTATAGCACT 59.675 38.462 26.07 3.93 45.16 4.40
1785 1890 6.516718 TGATACCTTTCTTCAGCTATAGCAC 58.483 40.000 26.07 0.00 45.16 4.40
1786 1891 6.731292 TGATACCTTTCTTCAGCTATAGCA 57.269 37.500 26.07 3.93 45.16 3.49
1787 1892 7.117523 CACATGATACCTTTCTTCAGCTATAGC 59.882 40.741 17.33 17.33 42.49 2.97
1788 1893 8.147058 ACACATGATACCTTTCTTCAGCTATAG 58.853 37.037 0.00 0.00 0.00 1.31
1789 1894 8.023021 ACACATGATACCTTTCTTCAGCTATA 57.977 34.615 0.00 0.00 0.00 1.31
1790 1895 6.893583 ACACATGATACCTTTCTTCAGCTAT 58.106 36.000 0.00 0.00 0.00 2.97
1791 1896 6.299805 ACACATGATACCTTTCTTCAGCTA 57.700 37.500 0.00 0.00 0.00 3.32
1792 1897 5.171339 ACACATGATACCTTTCTTCAGCT 57.829 39.130 0.00 0.00 0.00 4.24
1793 1898 5.182001 ACAACACATGATACCTTTCTTCAGC 59.818 40.000 0.00 0.00 0.00 4.26
1794 1899 6.348786 CCACAACACATGATACCTTTCTTCAG 60.349 42.308 0.00 0.00 0.00 3.02
1795 1900 5.473162 CCACAACACATGATACCTTTCTTCA 59.527 40.000 0.00 0.00 0.00 3.02
1796 1901 5.619981 GCCACAACACATGATACCTTTCTTC 60.620 44.000 0.00 0.00 0.00 2.87
1797 1902 4.218417 GCCACAACACATGATACCTTTCTT 59.782 41.667 0.00 0.00 0.00 2.52
1798 1903 3.758554 GCCACAACACATGATACCTTTCT 59.241 43.478 0.00 0.00 0.00 2.52
1799 1904 3.758554 AGCCACAACACATGATACCTTTC 59.241 43.478 0.00 0.00 0.00 2.62
1800 1905 3.766545 AGCCACAACACATGATACCTTT 58.233 40.909 0.00 0.00 0.00 3.11
1801 1906 3.439857 AGCCACAACACATGATACCTT 57.560 42.857 0.00 0.00 0.00 3.50
1802 1907 3.439857 AAGCCACAACACATGATACCT 57.560 42.857 0.00 0.00 0.00 3.08
1803 1908 5.835113 AATAAGCCACAACACATGATACC 57.165 39.130 0.00 0.00 0.00 2.73
1804 1909 6.851609 TCAAATAAGCCACAACACATGATAC 58.148 36.000 0.00 0.00 0.00 2.24
1805 1910 6.658816 ACTCAAATAAGCCACAACACATGATA 59.341 34.615 0.00 0.00 0.00 2.15
1806 1911 5.477984 ACTCAAATAAGCCACAACACATGAT 59.522 36.000 0.00 0.00 0.00 2.45
1807 1912 4.826733 ACTCAAATAAGCCACAACACATGA 59.173 37.500 0.00 0.00 0.00 3.07
1808 1913 5.125100 ACTCAAATAAGCCACAACACATG 57.875 39.130 0.00 0.00 0.00 3.21
1809 1914 5.106157 GCTACTCAAATAAGCCACAACACAT 60.106 40.000 0.00 0.00 0.00 3.21
1810 1915 4.215399 GCTACTCAAATAAGCCACAACACA 59.785 41.667 0.00 0.00 0.00 3.72
1811 1916 4.455877 AGCTACTCAAATAAGCCACAACAC 59.544 41.667 0.00 0.00 36.92 3.32
1812 1917 4.651778 AGCTACTCAAATAAGCCACAACA 58.348 39.130 0.00 0.00 36.92 3.33
1813 1918 5.392057 GGAAGCTACTCAAATAAGCCACAAC 60.392 44.000 0.00 0.00 36.92 3.32
1814 1919 4.700213 GGAAGCTACTCAAATAAGCCACAA 59.300 41.667 0.00 0.00 36.92 3.33
1815 1920 4.261801 GGAAGCTACTCAAATAAGCCACA 58.738 43.478 0.00 0.00 36.92 4.17
1816 1921 4.095036 GTGGAAGCTACTCAAATAAGCCAC 59.905 45.833 0.00 0.00 36.92 5.01
1817 1922 4.261801 GTGGAAGCTACTCAAATAAGCCA 58.738 43.478 0.00 0.00 36.92 4.75
1818 1923 4.261801 TGTGGAAGCTACTCAAATAAGCC 58.738 43.478 0.00 0.00 36.92 4.35
1819 1924 5.181245 TGTTGTGGAAGCTACTCAAATAAGC 59.819 40.000 7.22 0.00 36.48 3.09
1820 1925 6.621596 GCTGTTGTGGAAGCTACTCAAATAAG 60.622 42.308 7.22 7.11 36.47 1.73
1821 1926 5.181245 GCTGTTGTGGAAGCTACTCAAATAA 59.819 40.000 7.22 0.00 36.47 1.40
1822 1927 4.695455 GCTGTTGTGGAAGCTACTCAAATA 59.305 41.667 7.22 1.56 36.47 1.40
1823 1928 3.503748 GCTGTTGTGGAAGCTACTCAAAT 59.496 43.478 7.22 0.00 36.47 2.32
1824 1929 2.878406 GCTGTTGTGGAAGCTACTCAAA 59.122 45.455 7.22 0.00 36.47 2.69
1825 1930 2.494059 GCTGTTGTGGAAGCTACTCAA 58.506 47.619 0.00 0.00 36.47 3.02
1826 1931 1.605457 CGCTGTTGTGGAAGCTACTCA 60.605 52.381 0.00 0.00 37.27 3.41
1827 1932 1.071605 CGCTGTTGTGGAAGCTACTC 58.928 55.000 0.00 0.00 37.27 2.59
1828 1933 0.951040 GCGCTGTTGTGGAAGCTACT 60.951 55.000 0.00 0.00 37.27 2.57
1829 1934 1.227999 TGCGCTGTTGTGGAAGCTAC 61.228 55.000 9.73 0.00 37.27 3.58
1830 1935 0.950555 CTGCGCTGTTGTGGAAGCTA 60.951 55.000 9.73 0.00 37.27 3.32
1831 1936 2.203195 TGCGCTGTTGTGGAAGCT 60.203 55.556 9.73 0.00 37.27 3.74
1832 1937 1.785041 TTCTGCGCTGTTGTGGAAGC 61.785 55.000 9.73 0.00 36.03 3.86
1833 1938 0.236711 CTTCTGCGCTGTTGTGGAAG 59.763 55.000 9.73 2.77 0.00 3.46
1834 1939 0.463654 ACTTCTGCGCTGTTGTGGAA 60.464 50.000 9.73 0.00 0.00 3.53
1835 1940 0.463654 AACTTCTGCGCTGTTGTGGA 60.464 50.000 9.73 0.00 0.00 4.02
1836 1941 0.381801 AAACTTCTGCGCTGTTGTGG 59.618 50.000 9.73 1.50 0.00 4.17
1837 1942 3.332761 TTAAACTTCTGCGCTGTTGTG 57.667 42.857 9.73 3.24 0.00 3.33
1838 1943 3.243068 CCTTTAAACTTCTGCGCTGTTGT 60.243 43.478 9.73 8.92 0.00 3.32
1839 1944 3.300009 CCTTTAAACTTCTGCGCTGTTG 58.700 45.455 9.73 8.26 0.00 3.33
1840 1945 2.293399 CCCTTTAAACTTCTGCGCTGTT 59.707 45.455 9.73 5.90 0.00 3.16
1841 1946 1.880027 CCCTTTAAACTTCTGCGCTGT 59.120 47.619 9.73 0.00 0.00 4.40
1842 1947 1.880027 ACCCTTTAAACTTCTGCGCTG 59.120 47.619 9.73 8.88 0.00 5.18
1843 1948 1.880027 CACCCTTTAAACTTCTGCGCT 59.120 47.619 9.73 0.00 0.00 5.92
1844 1949 1.068541 CCACCCTTTAAACTTCTGCGC 60.069 52.381 0.00 0.00 0.00 6.09
1845 1950 1.068541 GCCACCCTTTAAACTTCTGCG 60.069 52.381 0.00 0.00 0.00 5.18
1846 1951 1.960689 TGCCACCCTTTAAACTTCTGC 59.039 47.619 0.00 0.00 0.00 4.26
1847 1952 3.222603 AGTGCCACCCTTTAAACTTCTG 58.777 45.455 0.00 0.00 0.00 3.02
1848 1953 3.595190 AGTGCCACCCTTTAAACTTCT 57.405 42.857 0.00 0.00 0.00 2.85
1849 1954 5.977489 ATTAGTGCCACCCTTTAAACTTC 57.023 39.130 0.00 0.00 0.00 3.01
1850 1955 7.842887 TTAATTAGTGCCACCCTTTAAACTT 57.157 32.000 0.00 0.00 0.00 2.66
1851 1956 7.093509 CCATTAATTAGTGCCACCCTTTAAACT 60.094 37.037 2.54 0.00 0.00 2.66
1852 1957 7.039270 CCATTAATTAGTGCCACCCTTTAAAC 58.961 38.462 2.54 0.00 0.00 2.01
1853 1958 6.954684 TCCATTAATTAGTGCCACCCTTTAAA 59.045 34.615 2.54 0.00 0.00 1.52
1854 1959 6.494952 TCCATTAATTAGTGCCACCCTTTAA 58.505 36.000 2.54 0.00 0.00 1.52
1855 1960 6.080969 TCCATTAATTAGTGCCACCCTTTA 57.919 37.500 2.54 0.00 0.00 1.85
1856 1961 4.941713 TCCATTAATTAGTGCCACCCTTT 58.058 39.130 2.54 0.00 0.00 3.11
1857 1962 4.601406 TCCATTAATTAGTGCCACCCTT 57.399 40.909 2.54 0.00 0.00 3.95
1858 1963 4.601406 TTCCATTAATTAGTGCCACCCT 57.399 40.909 2.54 0.00 0.00 4.34
1859 1964 5.869649 AATTCCATTAATTAGTGCCACCC 57.130 39.130 2.54 0.00 35.98 4.61
1860 1965 7.112452 AGAAATTCCATTAATTAGTGCCACC 57.888 36.000 2.54 0.00 36.76 4.61
1861 1966 9.899226 GATAGAAATTCCATTAATTAGTGCCAC 57.101 33.333 2.54 0.00 36.76 5.01
1862 1967 9.639563 TGATAGAAATTCCATTAATTAGTGCCA 57.360 29.630 2.54 0.00 36.76 4.92
1870 1975 9.372189 CCCCTTCTTGATAGAAATTCCATTAAT 57.628 33.333 0.00 0.00 39.80 1.40
1871 1976 8.343787 ACCCCTTCTTGATAGAAATTCCATTAA 58.656 33.333 0.00 0.00 39.80 1.40
1872 1977 7.882755 ACCCCTTCTTGATAGAAATTCCATTA 58.117 34.615 0.00 0.00 39.80 1.90
1873 1978 6.745857 ACCCCTTCTTGATAGAAATTCCATT 58.254 36.000 0.00 0.00 39.80 3.16
1874 1979 6.347061 ACCCCTTCTTGATAGAAATTCCAT 57.653 37.500 0.00 0.00 39.80 3.41
1875 1980 5.340027 GGACCCCTTCTTGATAGAAATTCCA 60.340 44.000 0.00 0.00 39.80 3.53
1876 1981 5.133941 GGACCCCTTCTTGATAGAAATTCC 58.866 45.833 0.00 0.00 39.80 3.01
1877 1982 4.816925 CGGACCCCTTCTTGATAGAAATTC 59.183 45.833 0.00 0.00 39.80 2.17
1878 1983 4.227527 ACGGACCCCTTCTTGATAGAAATT 59.772 41.667 0.00 0.00 39.80 1.82
1879 1984 3.780850 ACGGACCCCTTCTTGATAGAAAT 59.219 43.478 0.00 0.00 39.80 2.17
1880 1985 3.055385 CACGGACCCCTTCTTGATAGAAA 60.055 47.826 0.00 0.00 39.80 2.52
1881 1986 2.500098 CACGGACCCCTTCTTGATAGAA 59.500 50.000 0.00 0.00 38.06 2.10
1882 1987 2.108168 CACGGACCCCTTCTTGATAGA 58.892 52.381 0.00 0.00 0.00 1.98
1883 1988 1.473434 GCACGGACCCCTTCTTGATAG 60.473 57.143 0.00 0.00 0.00 2.08
1884 1989 0.539986 GCACGGACCCCTTCTTGATA 59.460 55.000 0.00 0.00 0.00 2.15
1885 1990 1.299976 GCACGGACCCCTTCTTGAT 59.700 57.895 0.00 0.00 0.00 2.57
1886 1991 2.111999 CTGCACGGACCCCTTCTTGA 62.112 60.000 0.00 0.00 0.00 3.02
1887 1992 1.672356 CTGCACGGACCCCTTCTTG 60.672 63.158 0.00 0.00 0.00 3.02
1888 1993 1.705997 AACTGCACGGACCCCTTCTT 61.706 55.000 0.00 0.00 0.00 2.52
1889 1994 2.113243 GAACTGCACGGACCCCTTCT 62.113 60.000 0.00 0.00 0.00 2.85
1890 1995 1.671379 GAACTGCACGGACCCCTTC 60.671 63.158 0.00 0.00 0.00 3.46
1891 1996 2.113243 GAGAACTGCACGGACCCCTT 62.113 60.000 0.00 0.00 0.00 3.95
1892 1997 2.526873 AGAACTGCACGGACCCCT 60.527 61.111 0.00 0.00 0.00 4.79
1893 1998 2.047179 GAGAACTGCACGGACCCC 60.047 66.667 0.00 0.00 0.00 4.95
1894 1999 1.070786 TTGAGAACTGCACGGACCC 59.929 57.895 0.00 0.00 0.00 4.46
1895 2000 0.531974 TGTTGAGAACTGCACGGACC 60.532 55.000 0.00 0.00 0.00 4.46
1896 2001 1.261619 CTTGTTGAGAACTGCACGGAC 59.738 52.381 0.00 0.00 0.00 4.79
1897 2002 1.581934 CTTGTTGAGAACTGCACGGA 58.418 50.000 0.00 0.00 0.00 4.69
1898 2003 0.040958 GCTTGTTGAGAACTGCACGG 60.041 55.000 0.00 0.00 33.88 4.94
1899 2004 0.383491 CGCTTGTTGAGAACTGCACG 60.383 55.000 0.00 0.00 33.51 5.34
1900 2005 0.040958 CCGCTTGTTGAGAACTGCAC 60.041 55.000 0.00 0.00 33.51 4.57
1971 2076 5.993055 TGCTGAGATGAATGGAAGTGATTA 58.007 37.500 0.00 0.00 0.00 1.75
1975 2080 5.578005 AAATGCTGAGATGAATGGAAGTG 57.422 39.130 0.00 0.00 0.00 3.16
1991 2096 6.564709 ATGTATATGCGACATGAAAATGCT 57.435 33.333 0.00 0.00 36.18 3.79
2005 2110 5.798132 TGATGGAGTTCCTCATGTATATGC 58.202 41.667 0.00 0.00 36.82 3.14
2011 2116 4.101274 CAGAGATGATGGAGTTCCTCATGT 59.899 45.833 14.00 11.37 35.50 3.21
2042 2148 7.575414 ACAAAATGTCCATACACAACAACTA 57.425 32.000 0.00 0.00 38.78 2.24
2047 2153 5.596845 ACCAACAAAATGTCCATACACAAC 58.403 37.500 0.00 0.00 38.78 3.32
2049 2155 4.279671 GGACCAACAAAATGTCCATACACA 59.720 41.667 3.14 0.00 46.29 3.72
2050 2156 4.805219 GGACCAACAAAATGTCCATACAC 58.195 43.478 3.14 0.00 46.29 2.90
2075 2181 9.301153 GAAAAATGAAGCATACGGTTAATGAAT 57.699 29.630 0.00 0.00 31.57 2.57
2084 2190 5.967674 GTGATCTGAAAAATGAAGCATACGG 59.032 40.000 0.00 0.00 0.00 4.02
2086 2192 6.096001 AGGGTGATCTGAAAAATGAAGCATAC 59.904 38.462 0.00 0.00 0.00 2.39
2143 2249 1.555075 GTTCCAGGACTGCTATCACCA 59.445 52.381 0.00 0.00 0.00 4.17
2297 2404 8.955388 TGTATTTGCAACACACTATGACAATAT 58.045 29.630 0.00 0.00 0.00 1.28
2298 2405 8.329203 TGTATTTGCAACACACTATGACAATA 57.671 30.769 0.00 0.00 0.00 1.90
2299 2406 7.213216 TGTATTTGCAACACACTATGACAAT 57.787 32.000 0.00 0.00 0.00 2.71
2300 2407 6.625873 TGTATTTGCAACACACTATGACAA 57.374 33.333 0.00 0.00 0.00 3.18
2302 2409 9.787532 ATTTATGTATTTGCAACACACTATGAC 57.212 29.630 13.73 0.00 0.00 3.06
2376 2484 2.561858 GGTGACCTCCTACGAAAAGAGT 59.438 50.000 0.00 0.00 0.00 3.24
2476 2584 9.240159 ACAAGTTTTGAAATTACCGTATTCAAC 57.760 29.630 6.77 0.14 41.35 3.18
2498 2606 0.320374 TGTAGGCGACTTCCCACAAG 59.680 55.000 0.00 0.00 43.67 3.16
2505 2613 1.270678 ACAAGGGTTGTAGGCGACTTC 60.271 52.381 0.00 0.00 43.27 3.01
2540 2648 5.699839 CAAACATGAGGTAGTTGTAAAGGC 58.300 41.667 0.00 0.00 0.00 4.35
2541 2649 5.240623 TGCAAACATGAGGTAGTTGTAAAGG 59.759 40.000 0.00 0.00 0.00 3.11
2570 2678 8.485706 CTGTAGGCAGGTATATAAATGGCACAG 61.486 44.444 22.00 22.00 39.77 3.66
2631 2760 5.809562 CCACATTACAAGAGCTACTTCTCAG 59.190 44.000 0.00 0.00 36.61 3.35
2662 2791 1.940613 GTATGAACGTGGGATCTTGGC 59.059 52.381 0.00 0.00 0.00 4.52
2729 2858 8.412456 CAGAACAACATGGCCATATACAAAATA 58.588 33.333 20.30 0.00 0.00 1.40
2730 2859 7.093377 ACAGAACAACATGGCCATATACAAAAT 60.093 33.333 20.30 0.00 0.00 1.82
2731 2860 6.210385 ACAGAACAACATGGCCATATACAAAA 59.790 34.615 20.30 0.00 0.00 2.44
2742 2985 2.100584 TGGAACAACAGAACAACATGGC 59.899 45.455 0.00 0.00 31.92 4.40
2762 3007 3.181507 CGGTAAACTGTGAGGCATGAATG 60.182 47.826 0.00 0.00 0.00 2.67
2763 3008 3.009723 CGGTAAACTGTGAGGCATGAAT 58.990 45.455 0.00 0.00 0.00 2.57
2764 3009 2.422597 CGGTAAACTGTGAGGCATGAA 58.577 47.619 0.00 0.00 0.00 2.57
2765 3010 1.943968 GCGGTAAACTGTGAGGCATGA 60.944 52.381 0.00 0.00 0.00 3.07
2783 3032 2.987413 TCTGCATACACAAAAAGGCG 57.013 45.000 0.00 0.00 0.00 5.52
2816 3065 0.530650 ACAGTTGAGTGGTCAGCACG 60.531 55.000 0.25 0.00 36.40 5.34
2819 3068 0.946221 CGGACAGTTGAGTGGTCAGC 60.946 60.000 0.00 0.00 32.98 4.26
2891 3140 5.200483 AGTGTTTCTTCACTGATTTTGGGA 58.800 37.500 0.00 0.00 45.40 4.37
3009 3258 8.694581 AGCCTTATGTACTTACTAAGAGGTAG 57.305 38.462 2.65 0.00 35.75 3.18
3040 3289 6.265196 TGATGCAATAACAAGAAAAGGTCAGT 59.735 34.615 0.00 0.00 0.00 3.41
3041 3290 6.583806 GTGATGCAATAACAAGAAAAGGTCAG 59.416 38.462 0.00 0.00 0.00 3.51
3043 3292 6.681777 AGTGATGCAATAACAAGAAAAGGTC 58.318 36.000 0.00 0.00 26.21 3.85
3044 3293 6.655078 AGTGATGCAATAACAAGAAAAGGT 57.345 33.333 0.00 0.00 26.21 3.50
3045 3294 7.951530 AAAGTGATGCAATAACAAGAAAAGG 57.048 32.000 0.00 0.00 26.21 3.11
3047 3296 7.984050 TGGAAAAGTGATGCAATAACAAGAAAA 59.016 29.630 0.00 0.00 26.21 2.29
3048 3297 7.495901 TGGAAAAGTGATGCAATAACAAGAAA 58.504 30.769 0.00 0.00 26.21 2.52
3074 3323 9.249053 TGAATTGGCAGTATGTCCTAATAAAAA 57.751 29.630 0.00 0.00 42.68 1.94
3111 3360 4.755266 AGGTCAGTAATAAATCCTGCGT 57.245 40.909 0.00 0.00 0.00 5.24
3232 3483 5.362143 TGTCATGGTTGGAAGTCAAATTTCA 59.638 36.000 0.00 0.00 37.08 2.69
3260 3511 5.587844 GTCATGAATACTGTGAGCATTCCTT 59.412 40.000 0.00 0.00 0.00 3.36
3339 3590 1.401905 GGTGCACTAAATACTGCAGGC 59.598 52.381 19.93 9.51 43.97 4.85
3452 3706 2.759560 GGGGCCATGCAACGGAAT 60.760 61.111 4.39 0.00 0.00 3.01
3567 3823 8.394877 GTTATCACGATATGATTTTGGTGTTCA 58.605 33.333 0.00 0.00 46.54 3.18
3751 4057 9.066892 AGTAATTATGTTCAACATGTGACACTT 57.933 29.630 13.65 0.00 39.53 3.16
3806 4112 4.130118 GGCCAAGTACAGAATCAGGTATG 58.870 47.826 0.00 0.00 0.00 2.39
3819 4125 6.518208 TTAATGTGTTTATGGGCCAAGTAC 57.482 37.500 11.89 9.36 0.00 2.73
3825 4131 7.665559 TCTCTGATATTAATGTGTTTATGGGCC 59.334 37.037 0.00 0.00 0.00 5.80
3844 4150 8.571461 TGTCATCAGCTTTTATTTTCTCTGAT 57.429 30.769 0.00 0.00 40.64 2.90
3916 4222 4.640771 AAGAGCCTTCATTTCCACTGTA 57.359 40.909 0.00 0.00 0.00 2.74
3922 4228 5.530543 CAGAGGATTAAGAGCCTTCATTTCC 59.469 44.000 0.00 0.00 43.10 3.13
4077 4384 8.346300 TCTTAAACTTGCAAATGACGTTGATAA 58.654 29.630 0.00 0.00 0.00 1.75
4261 4568 2.254546 ACAACCATGAGAAGTTGCGA 57.745 45.000 11.15 0.00 45.79 5.10
4263 4570 3.316308 ACAGAACAACCATGAGAAGTTGC 59.684 43.478 11.15 0.00 45.79 4.17
4342 4649 1.228862 ATTTGGTTGCGGCCCTTCT 60.229 52.632 0.00 0.00 0.00 2.85
4390 4697 4.073293 ACACTAGCTTTGATATTCGGGG 57.927 45.455 0.00 0.00 0.00 5.73
4393 4700 5.730568 GCCCAAACACTAGCTTTGATATTCG 60.731 44.000 12.89 0.00 31.32 3.34
4421 4728 3.368248 AGTTAACCATAGTGCTCCGGTA 58.632 45.455 0.00 0.00 0.00 4.02
4448 4755 6.268847 AGTGGTAAGACAGAAAAGACATCTCT 59.731 38.462 0.00 0.00 0.00 3.10
4468 4775 3.094484 TGTGAAAACCTGGAAAGTGGT 57.906 42.857 0.00 0.00 38.35 4.16
4472 4779 6.573664 TCATGTATGTGAAAACCTGGAAAG 57.426 37.500 0.00 0.00 0.00 2.62
4486 4793 9.177608 ACATATGCACTACTTTTTCATGTATGT 57.822 29.630 1.58 0.00 0.00 2.29
4760 8975 6.009908 TCCATGATCCACATTTCATCTTCT 57.990 37.500 0.00 0.00 37.07 2.85
4783 8998 4.025858 AGTCGCTGGCATGTGGCT 62.026 61.111 8.09 0.00 44.01 4.75
4877 9118 4.546674 TCTAGCCTGTGAGGAATGACATA 58.453 43.478 0.00 0.00 37.67 2.29
4878 9119 3.378512 TCTAGCCTGTGAGGAATGACAT 58.621 45.455 0.00 0.00 37.67 3.06
4879 9120 2.762887 CTCTAGCCTGTGAGGAATGACA 59.237 50.000 0.00 0.00 37.67 3.58
5035 9292 2.601666 AGCGTCAGCCTGTCAGGA 60.602 61.111 23.77 0.00 46.67 3.86
5036 9293 2.433838 CAGCGTCAGCCTGTCAGG 60.434 66.667 15.15 15.15 46.67 3.86
5037 9294 3.117171 GCAGCGTCAGCCTGTCAG 61.117 66.667 0.00 0.00 46.67 3.51
5038 9295 2.939133 TTTGCAGCGTCAGCCTGTCA 62.939 55.000 0.00 0.00 46.67 3.58
5039 9296 2.253758 TTTGCAGCGTCAGCCTGTC 61.254 57.895 0.00 0.00 46.67 3.51
5056 9313 3.771216 AGGAAGACATGGCAGAATTGTT 58.229 40.909 0.00 0.00 0.00 2.83
5105 9375 4.827284 GGATAGAGATAGAGATAGGCAGGC 59.173 50.000 0.00 0.00 0.00 4.85
5109 9379 6.260700 TCTGGGATAGAGATAGAGATAGGC 57.739 45.833 0.00 0.00 0.00 3.93
5113 9383 6.214615 TCGTCTTCTGGGATAGAGATAGAGAT 59.785 42.308 0.00 0.00 36.61 2.75
5116 9386 5.827326 TCGTCTTCTGGGATAGAGATAGA 57.173 43.478 0.00 0.00 36.61 1.98
5119 9389 5.894393 TCTTTTCGTCTTCTGGGATAGAGAT 59.106 40.000 0.00 0.00 36.61 2.75
5128 9398 5.163652 ACCTTGTTTTCTTTTCGTCTTCTGG 60.164 40.000 0.00 0.00 0.00 3.86
5130 9400 6.322491 CAACCTTGTTTTCTTTTCGTCTTCT 58.678 36.000 0.00 0.00 0.00 2.85
5131 9401 5.515270 CCAACCTTGTTTTCTTTTCGTCTTC 59.485 40.000 0.00 0.00 0.00 2.87
5132 9402 5.184287 TCCAACCTTGTTTTCTTTTCGTCTT 59.816 36.000 0.00 0.00 0.00 3.01
5133 9403 4.703093 TCCAACCTTGTTTTCTTTTCGTCT 59.297 37.500 0.00 0.00 0.00 4.18
5134 9404 4.989044 TCCAACCTTGTTTTCTTTTCGTC 58.011 39.130 0.00 0.00 0.00 4.20
5136 9406 6.039616 TGATTCCAACCTTGTTTTCTTTTCG 58.960 36.000 0.00 0.00 0.00 3.46
5137 9407 7.841915 TTGATTCCAACCTTGTTTTCTTTTC 57.158 32.000 0.00 0.00 0.00 2.29
5138 9408 7.663493 TGTTTGATTCCAACCTTGTTTTCTTTT 59.337 29.630 0.00 0.00 30.88 2.27
5139 9409 7.119116 GTGTTTGATTCCAACCTTGTTTTCTTT 59.881 33.333 0.00 0.00 30.88 2.52
5143 9438 5.182487 GGTGTTTGATTCCAACCTTGTTTT 58.818 37.500 0.00 0.00 30.88 2.43
5146 9441 2.698274 GGGTGTTTGATTCCAACCTTGT 59.302 45.455 0.00 0.00 35.47 3.16
5147 9442 2.697751 TGGGTGTTTGATTCCAACCTTG 59.302 45.455 0.00 0.00 39.29 3.61
5161 9456 2.437281 TGTTTTGATGGCATTGGGTGTT 59.563 40.909 0.00 0.00 0.00 3.32
5174 9469 7.271511 TGCAAGATTAGTTTGGTTGTTTTGAT 58.728 30.769 0.00 0.00 0.00 2.57
5177 9472 8.504812 AAATGCAAGATTAGTTTGGTTGTTTT 57.495 26.923 0.00 0.00 0.00 2.43
5205 9500 1.626686 TTTGAACCCGCACATGGAAT 58.373 45.000 0.00 0.00 0.00 3.01
5206 9501 1.626686 ATTTGAACCCGCACATGGAA 58.373 45.000 0.00 0.00 0.00 3.53
5207 9502 1.626686 AATTTGAACCCGCACATGGA 58.373 45.000 0.00 0.00 0.00 3.41
5208 9503 2.067766 CAAATTTGAACCCGCACATGG 58.932 47.619 13.08 0.00 0.00 3.66
5209 9504 3.023946 TCAAATTTGAACCCGCACATG 57.976 42.857 18.45 0.00 33.55 3.21
5351 9658 0.782384 CTGTTGTTGCGTAGGACGAC 59.218 55.000 2.65 0.00 46.05 4.34
5550 9858 0.689412 GAGGTGAAGGAGGAGGAGGG 60.689 65.000 0.00 0.00 0.00 4.30
5677 9991 3.720193 CGTCGTCCTCGTCGTGGT 61.720 66.667 12.76 0.00 41.73 4.16
5678 9992 3.364249 CTCGTCGTCCTCGTCGTGG 62.364 68.421 7.02 7.02 45.27 4.94
5679 9993 2.096030 CTCGTCGTCCTCGTCGTG 59.904 66.667 7.05 0.00 45.27 4.35
5680 9994 3.117171 CCTCGTCGTCCTCGTCGT 61.117 66.667 7.05 0.00 45.27 4.34
5681 9995 2.800581 CTCCTCGTCGTCCTCGTCG 61.801 68.421 0.00 1.62 46.06 5.12
5682 9996 2.462782 CCTCCTCGTCGTCCTCGTC 61.463 68.421 0.00 0.00 38.33 4.20
5683 9997 2.436292 CCTCCTCGTCGTCCTCGT 60.436 66.667 0.00 0.00 38.33 4.18
5684 9998 2.125229 TCCTCCTCGTCGTCCTCG 60.125 66.667 0.00 0.00 38.55 4.63
5685 9999 2.114051 GGTCCTCCTCGTCGTCCTC 61.114 68.421 0.00 0.00 0.00 3.71
5686 10000 2.045143 GGTCCTCCTCGTCGTCCT 60.045 66.667 0.00 0.00 0.00 3.85
5687 10001 3.139469 GGGTCCTCCTCGTCGTCC 61.139 72.222 0.00 0.00 0.00 4.79
5688 10002 2.045143 AGGGTCCTCCTCGTCGTC 60.045 66.667 0.00 0.00 44.06 4.20
5689 10003 2.361357 CAGGGTCCTCCTCGTCGT 60.361 66.667 0.00 0.00 46.12 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.