Multiple sequence alignment - TraesCS2D01G487100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G487100 chr2D 100.000 2764 0 0 1 2764 587113102 587110339 0.000000e+00 5105.0
1 TraesCS2D01G487100 chr2D 82.149 549 68 18 1016 1559 617957452 617957975 7.020000e-121 444.0
2 TraesCS2D01G487100 chr2D 80.839 548 79 19 1019 1559 617972796 617973324 9.220000e-110 407.0
3 TraesCS2D01G487100 chr2D 89.818 275 28 0 1283 1557 617941883 617942157 1.220000e-93 353.0
4 TraesCS2D01G487100 chr2D 96.552 58 2 0 1 58 78248910 78248853 2.270000e-16 97.1
5 TraesCS2D01G487100 chr2D 87.654 81 7 3 2645 2723 35800097 35800018 1.050000e-14 91.6
6 TraesCS2D01G487100 chr2B 85.843 1109 72 40 841 1887 708863737 708862652 0.000000e+00 1099.0
7 TraesCS2D01G487100 chr2B 90.282 710 55 10 2063 2764 708868013 708867310 0.000000e+00 917.0
8 TraesCS2D01G487100 chr2B 88.164 659 49 9 55 687 708871535 708870880 0.000000e+00 758.0
9 TraesCS2D01G487100 chr2B 81.105 561 74 16 1072 1620 753952270 753952810 1.180000e-113 420.0
10 TraesCS2D01G487100 chr2B 82.983 476 62 16 2069 2540 708860410 708859950 1.980000e-111 412.0
11 TraesCS2D01G487100 chr2B 86.932 352 35 6 1283 1624 754001292 754001642 4.320000e-103 385.0
12 TraesCS2D01G487100 chr2B 90.323 279 24 3 1283 1561 753974087 753974362 2.020000e-96 363.0
13 TraesCS2D01G487100 chr2B 89.531 277 29 0 1283 1559 753986892 753987168 4.380000e-93 351.0
14 TraesCS2D01G487100 chr2B 82.576 396 55 12 1287 1676 708826662 708826275 1.230000e-88 337.0
15 TraesCS2D01G487100 chr2B 90.000 260 24 1 55 314 708864025 708863768 4.410000e-88 335.0
16 TraesCS2D01G487100 chr2B 87.554 233 21 3 2536 2764 708859902 708859674 2.110000e-66 263.0
17 TraesCS2D01G487100 chr2B 87.736 106 8 2 1912 2012 708860507 708860402 4.840000e-23 119.0
18 TraesCS2D01G487100 chr2B 96.875 64 2 0 903 966 708870688 708870625 1.050000e-19 108.0
19 TraesCS2D01G487100 chr3D 90.698 86 4 2 2643 2728 45931330 45931411 8.090000e-21 111.0
20 TraesCS2D01G487100 chr3D 96.552 58 2 0 1 58 106042140 106042083 2.270000e-16 97.1
21 TraesCS2D01G487100 chr7D 96.721 61 2 0 2644 2704 171838541 171838601 4.870000e-18 102.0
22 TraesCS2D01G487100 chr7A 96.552 58 2 0 1 58 264550429 264550486 2.270000e-16 97.1
23 TraesCS2D01G487100 chr6A 96.552 58 2 0 1 58 358751940 358751997 2.270000e-16 97.1
24 TraesCS2D01G487100 chr6A 96.552 58 2 0 1 58 493305911 493305854 2.270000e-16 97.1
25 TraesCS2D01G487100 chr4D 93.750 64 2 2 1 63 476310292 476310230 8.150000e-16 95.3
26 TraesCS2D01G487100 chr1D 96.491 57 2 0 1 57 198055739 198055683 8.150000e-16 95.3
27 TraesCS2D01G487100 chr4A 95.000 60 2 1 1 60 691241876 691241818 2.930000e-15 93.5
28 TraesCS2D01G487100 chr4A 82.353 102 8 7 2642 2740 99009817 99009723 2.280000e-11 80.5
29 TraesCS2D01G487100 chr1A 96.429 56 2 0 1 56 336482467 336482522 2.930000e-15 93.5
30 TraesCS2D01G487100 chr4B 84.043 94 7 7 2642 2734 450478055 450478141 1.760000e-12 84.2
31 TraesCS2D01G487100 chr4B 85.714 84 7 3 2646 2728 486282282 486282361 1.760000e-12 84.2
32 TraesCS2D01G487100 chr2A 82.474 97 11 3 2646 2740 385979261 385979353 2.280000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G487100 chr2D 587110339 587113102 2763 True 5105.000 5105 100.000000 1 2764 1 chr2D.!!$R3 2763
1 TraesCS2D01G487100 chr2D 617957452 617957975 523 False 444.000 444 82.149000 1016 1559 1 chr2D.!!$F2 543
2 TraesCS2D01G487100 chr2D 617972796 617973324 528 False 407.000 407 80.839000 1019 1559 1 chr2D.!!$F3 540
3 TraesCS2D01G487100 chr2B 708859674 708871535 11861 True 501.375 1099 88.679625 55 2764 8 chr2B.!!$R2 2709
4 TraesCS2D01G487100 chr2B 753952270 753952810 540 False 420.000 420 81.105000 1072 1620 1 chr2B.!!$F1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
891 917 0.448990 TACACGTCATCTTCCCGTCG 59.551 55.0 0.0 0.0 31.46 5.12 F
1128 8236 0.250513 CCCACCTCCTTTCTTCCTCG 59.749 60.0 0.0 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1745 8900 0.036388 TGGCCTTGATCAGACCGAAC 60.036 55.0 3.32 0.0 0.00 3.95 R
2738 12075 0.413832 AGGACTGGGAGCACCTCTAA 59.586 55.0 0.00 0.0 41.11 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.939201 ATGTAGTCACATGTTGAAATCTCTAG 57.061 34.615 0.00 0.00 43.89 2.43
26 27 7.323420 TGTAGTCACATGTTGAAATCTCTAGG 58.677 38.462 0.00 0.00 35.39 3.02
27 28 6.611613 AGTCACATGTTGAAATCTCTAGGA 57.388 37.500 0.00 0.00 35.39 2.94
28 29 7.009179 AGTCACATGTTGAAATCTCTAGGAA 57.991 36.000 0.00 0.00 35.39 3.36
29 30 7.102346 AGTCACATGTTGAAATCTCTAGGAAG 58.898 38.462 0.00 0.00 35.39 3.46
30 31 7.038729 AGTCACATGTTGAAATCTCTAGGAAGA 60.039 37.037 0.00 0.00 35.39 2.87
31 32 7.064016 GTCACATGTTGAAATCTCTAGGAAGAC 59.936 40.741 0.00 0.00 35.39 3.01
32 33 6.875726 CACATGTTGAAATCTCTAGGAAGACA 59.124 38.462 0.00 0.00 0.00 3.41
33 34 7.388776 CACATGTTGAAATCTCTAGGAAGACAA 59.611 37.037 0.00 0.00 0.00 3.18
34 35 7.939039 ACATGTTGAAATCTCTAGGAAGACAAA 59.061 33.333 0.00 0.00 0.00 2.83
35 36 8.954350 CATGTTGAAATCTCTAGGAAGACAAAT 58.046 33.333 0.00 0.00 0.00 2.32
46 47 9.250624 CTCTAGGAAGACAAATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
47 48 8.202137 TCTAGGAAGACAAATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
48 49 6.954232 AGGAAGACAAATATTTAGGAACGGA 58.046 36.000 0.00 0.00 0.00 4.69
49 50 7.574607 AGGAAGACAAATATTTAGGAACGGAT 58.425 34.615 0.00 0.00 0.00 4.18
50 51 7.499232 AGGAAGACAAATATTTAGGAACGGATG 59.501 37.037 0.00 0.00 0.00 3.51
51 52 7.255139 GGAAGACAAATATTTAGGAACGGATGG 60.255 40.741 0.00 0.00 0.00 3.51
52 53 6.895782 AGACAAATATTTAGGAACGGATGGA 58.104 36.000 0.00 0.00 0.00 3.41
53 54 6.992715 AGACAAATATTTAGGAACGGATGGAG 59.007 38.462 0.00 0.00 0.00 3.86
68 69 6.411376 ACGGATGGAGTACATGTCAAAAATA 58.589 36.000 0.00 0.00 40.72 1.40
102 103 8.720562 GCATTTTCAGTAATATTTTGCAGGTTT 58.279 29.630 0.00 0.00 0.00 3.27
120 121 9.214957 TGCAGGTTTACACATTATATGTATAGC 57.785 33.333 0.00 0.00 42.70 2.97
121 122 9.436957 GCAGGTTTACACATTATATGTATAGCT 57.563 33.333 1.18 1.18 42.70 3.32
171 172 4.044065 TGGAAACTATCTGGTTTGGTCCAT 59.956 41.667 0.00 0.00 39.20 3.41
174 175 4.927267 ACTATCTGGTTTGGTCCATCAA 57.073 40.909 0.00 0.00 36.84 2.57
186 187 4.136796 TGGTCCATCAACTCTTGTCAAAG 58.863 43.478 0.00 0.00 34.45 2.77
189 190 4.816385 GTCCATCAACTCTTGTCAAAGTCA 59.184 41.667 2.28 0.00 34.78 3.41
205 206 7.487829 TGTCAAAGTCAAAAACTCAAATGCTAC 59.512 33.333 0.00 0.00 37.17 3.58
282 283 7.272978 TGTGTAAGAGGTTCTAATAATGAGGC 58.727 38.462 0.00 0.00 0.00 4.70
302 303 2.966309 GCAGCGCACACCTACAACC 61.966 63.158 11.47 0.00 0.00 3.77
307 308 0.739813 CGCACACCTACAACCTAGCC 60.740 60.000 0.00 0.00 0.00 3.93
331 332 5.610124 CGCCACAAAGATTTGACAAAAATCG 60.610 40.000 12.07 0.00 40.56 3.34
332 333 5.461737 GCCACAAAGATTTGACAAAAATCGA 59.538 36.000 12.07 0.00 40.56 3.59
333 334 6.019156 GCCACAAAGATTTGACAAAAATCGAA 60.019 34.615 12.07 0.00 40.56 3.71
359 360 6.729690 AATTGGGTGAGAATGAAAACTTCA 57.270 33.333 0.00 0.00 45.01 3.02
389 390 5.972935 ACAAACTTAAAGGGAAACTTGGTG 58.027 37.500 0.00 0.00 39.96 4.17
566 570 5.717654 TGTTTTCACTTGTAGAAAAAGGGGT 59.282 36.000 3.02 0.00 43.98 4.95
567 571 6.890814 TGTTTTCACTTGTAGAAAAAGGGGTA 59.109 34.615 3.02 0.00 43.98 3.69
568 572 7.067737 TGTTTTCACTTGTAGAAAAAGGGGTAG 59.932 37.037 3.02 0.00 43.98 3.18
570 574 6.697641 TCACTTGTAGAAAAAGGGGTAGAT 57.302 37.500 0.00 0.00 0.00 1.98
576 584 9.331282 CTTGTAGAAAAAGGGGTAGATATCAAG 57.669 37.037 5.32 0.00 0.00 3.02
679 705 6.500684 TGAAGACACTCATTTTAAGCATCC 57.499 37.500 0.00 0.00 0.00 3.51
687 713 6.255020 CACTCATTTTAAGCATCCAGATTTGC 59.745 38.462 0.00 0.00 39.17 3.68
692 718 2.822707 AGCATCCAGATTTGCTCCTT 57.177 45.000 0.00 0.00 45.83 3.36
693 719 2.652590 AGCATCCAGATTTGCTCCTTC 58.347 47.619 0.00 0.00 45.83 3.46
694 720 2.025605 AGCATCCAGATTTGCTCCTTCA 60.026 45.455 0.00 0.00 45.83 3.02
695 721 2.756760 GCATCCAGATTTGCTCCTTCAA 59.243 45.455 0.00 0.00 35.95 2.69
696 722 3.194116 GCATCCAGATTTGCTCCTTCAAA 59.806 43.478 0.00 0.00 39.87 2.69
697 723 4.322198 GCATCCAGATTTGCTCCTTCAAAA 60.322 41.667 0.00 0.00 39.13 2.44
698 724 5.786311 CATCCAGATTTGCTCCTTCAAAAA 58.214 37.500 0.00 0.00 39.13 1.94
699 725 5.458041 TCCAGATTTGCTCCTTCAAAAAG 57.542 39.130 0.00 0.00 39.13 2.27
713 739 5.809051 CCTTCAAAAAGGCATCTAGATTTGC 59.191 40.000 9.44 9.44 45.50 3.68
714 740 6.350780 CCTTCAAAAAGGCATCTAGATTTGCT 60.351 38.462 15.98 2.43 45.50 3.91
715 741 6.199937 TCAAAAAGGCATCTAGATTTGCTC 57.800 37.500 15.98 8.03 38.88 4.26
716 742 5.126061 TCAAAAAGGCATCTAGATTTGCTCC 59.874 40.000 15.98 7.25 38.88 4.70
717 743 4.516652 AAAGGCATCTAGATTTGCTCCT 57.483 40.909 15.98 9.05 38.88 3.69
718 744 4.516652 AAGGCATCTAGATTTGCTCCTT 57.483 40.909 15.98 13.36 38.88 3.36
719 745 4.084011 AGGCATCTAGATTTGCTCCTTC 57.916 45.455 15.98 1.91 38.88 3.46
720 746 3.457380 AGGCATCTAGATTTGCTCCTTCA 59.543 43.478 15.98 0.00 38.88 3.02
721 747 4.080129 AGGCATCTAGATTTGCTCCTTCAA 60.080 41.667 15.98 0.00 38.88 2.69
722 748 4.641989 GGCATCTAGATTTGCTCCTTCAAA 59.358 41.667 15.98 0.00 39.87 2.69
723 749 5.126061 GGCATCTAGATTTGCTCCTTCAAAA 59.874 40.000 15.98 0.00 39.13 2.44
724 750 6.350445 GGCATCTAGATTTGCTCCTTCAAAAA 60.350 38.462 15.98 0.00 39.13 1.94
725 751 6.750963 GCATCTAGATTTGCTCCTTCAAAAAG 59.249 38.462 10.48 0.00 39.13 2.27
739 765 5.809051 CCTTCAAAAAGGCATCTAGATTTGC 59.191 40.000 9.44 9.44 45.50 3.68
740 766 5.981088 TCAAAAAGGCATCTAGATTTGCA 57.019 34.783 17.77 0.00 40.66 4.08
741 767 5.713025 TCAAAAAGGCATCTAGATTTGCAC 58.287 37.500 17.77 8.92 40.66 4.57
742 768 5.243507 TCAAAAAGGCATCTAGATTTGCACA 59.756 36.000 17.77 0.00 40.66 4.57
743 769 5.726980 AAAAGGCATCTAGATTTGCACAA 57.273 34.783 17.77 0.00 40.66 3.33
744 770 4.978083 AAGGCATCTAGATTTGCACAAG 57.022 40.909 17.77 0.19 40.66 3.16
745 771 3.960571 AGGCATCTAGATTTGCACAAGT 58.039 40.909 17.77 0.00 40.66 3.16
746 772 3.693085 AGGCATCTAGATTTGCACAAGTG 59.307 43.478 17.77 0.00 40.66 3.16
758 784 1.588674 CACAAGTGCGGGTAAACAGA 58.411 50.000 0.00 0.00 0.00 3.41
775 801 4.488126 ACAGACGACACAAATTTGATGG 57.512 40.909 24.64 14.60 0.00 3.51
785 811 1.638529 AATTTGATGGGACGGCCAAA 58.361 45.000 11.00 0.00 35.15 3.28
786 812 1.864669 ATTTGATGGGACGGCCAAAT 58.135 45.000 11.00 3.01 35.23 2.32
790 816 1.548269 TGATGGGACGGCCAAATTTTC 59.452 47.619 11.00 0.00 35.15 2.29
809 835 1.066143 TCGTTGATCAAAGGAGCCTCC 60.066 52.381 19.30 1.26 36.58 4.30
812 838 1.956869 TGATCAAAGGAGCCTCCAGA 58.043 50.000 14.46 8.24 39.61 3.86
833 859 3.091545 ACAAATTTGATGAGACGGCCAT 58.908 40.909 24.64 0.00 0.00 4.40
848 874 2.481104 CGGCCATTGGTGCGATAAAATT 60.481 45.455 2.24 0.00 0.00 1.82
854 880 6.707711 CCATTGGTGCGATAAAATTTGATTG 58.292 36.000 0.00 0.00 0.00 2.67
878 904 2.097036 TCGGTGGATCTTGATACACGT 58.903 47.619 16.89 0.00 36.24 4.49
879 905 2.098607 TCGGTGGATCTTGATACACGTC 59.901 50.000 16.89 6.16 36.24 4.34
891 917 0.448990 TACACGTCATCTTCCCGTCG 59.551 55.000 0.00 0.00 31.46 5.12
991 8091 1.471287 CACCAGGACGACAACGATAGA 59.529 52.381 0.00 0.00 42.66 1.98
1007 8111 1.003851 TAGATGCGGCGTAAACAAGC 58.996 50.000 9.37 0.00 0.00 4.01
1035 8139 1.605453 GGAAAGCACCCGGTATCCA 59.395 57.895 0.00 0.00 0.00 3.41
1046 8150 2.357777 CCCGGTATCCAGGAAAACCAAT 60.358 50.000 19.72 0.00 32.04 3.16
1056 8160 0.589223 GAAAACCAATGTCCGCGACA 59.411 50.000 8.23 11.03 46.90 4.35
1076 8180 0.535102 ACTGTTTTGCTCCGGACCTG 60.535 55.000 0.00 0.00 0.00 4.00
1103 8209 3.257624 CCTCCGTCCTGTATATAACCACC 59.742 52.174 0.00 0.00 0.00 4.61
1128 8236 0.250513 CCCACCTCCTTTCTTCCTCG 59.749 60.000 0.00 0.00 0.00 4.63
1135 8251 2.935201 CTCCTTTCTTCCTCGCATCAAG 59.065 50.000 0.00 0.00 0.00 3.02
1174 8292 4.143030 CCAACAGCTCAGTTCATTCGTAAG 60.143 45.833 0.00 0.00 0.00 2.34
1184 8302 3.038788 TCATTCGTAAGCAGCACAAGA 57.961 42.857 0.00 0.00 37.18 3.02
1221 8346 2.619849 CCATCAATCTTCAGGCACCACT 60.620 50.000 0.00 0.00 0.00 4.00
1233 8358 3.055530 CAGGCACCACTGAATTCTAGACT 60.056 47.826 7.05 0.00 40.97 3.24
1257 8382 2.061773 CAGTCAGTCAGCTTTACCGTG 58.938 52.381 0.00 0.00 0.00 4.94
1263 8388 0.753867 TCAGCTTTACCGTGTCCACA 59.246 50.000 0.00 0.00 0.00 4.17
1278 8403 1.270826 TCCACAAACGCAGAGAGAGAG 59.729 52.381 0.00 0.00 0.00 3.20
1279 8404 1.671261 CCACAAACGCAGAGAGAGAGG 60.671 57.143 0.00 0.00 0.00 3.69
1280 8405 1.000283 CACAAACGCAGAGAGAGAGGT 60.000 52.381 0.00 0.00 0.00 3.85
1281 8406 1.271102 ACAAACGCAGAGAGAGAGGTC 59.729 52.381 0.00 0.00 0.00 3.85
1463 8591 3.660621 GCACGAAGCAGCTTCCTT 58.339 55.556 26.35 13.00 44.79 3.36
1621 8753 2.352715 GCAGTAACCATGGCCTGAAAAC 60.353 50.000 23.70 8.58 0.00 2.43
1672 8807 4.000325 ACCACGACGATGATGATGAAAAA 59.000 39.130 0.00 0.00 0.00 1.94
1685 8820 8.113173 TGATGATGAAAAATTCTGTCACATGA 57.887 30.769 0.00 0.00 31.41 3.07
1699 8834 7.492524 TCTGTCACATGAGTTTATATCACCTC 58.507 38.462 0.00 0.00 0.00 3.85
1702 8837 6.926272 GTCACATGAGTTTATATCACCTCCTC 59.074 42.308 0.00 0.00 0.00 3.71
1703 8838 6.841229 TCACATGAGTTTATATCACCTCCTCT 59.159 38.462 0.00 0.00 0.00 3.69
1705 8840 7.989741 CACATGAGTTTATATCACCTCCTCTTT 59.010 37.037 0.00 0.00 0.00 2.52
1709 8863 8.772250 TGAGTTTATATCACCTCCTCTTTTGAT 58.228 33.333 0.00 0.00 33.31 2.57
1711 8865 7.995488 AGTTTATATCACCTCCTCTTTTGATGG 59.005 37.037 0.00 0.00 31.20 3.51
1717 8871 4.079787 CACCTCCTCTTTTGATGGGGAATA 60.080 45.833 0.00 0.00 0.00 1.75
1718 8872 4.079730 ACCTCCTCTTTTGATGGGGAATAC 60.080 45.833 0.00 0.00 0.00 1.89
1721 8875 3.214328 CTCTTTTGATGGGGAATACGGG 58.786 50.000 0.00 0.00 0.00 5.28
1725 8879 1.301479 GATGGGGAATACGGGCGTC 60.301 63.158 0.00 0.00 0.00 5.19
1739 8894 0.388520 GGCGTCTCAATTGGTTTGCC 60.389 55.000 5.42 10.77 35.16 4.52
1745 8900 0.680618 TCAATTGGTTTGCCTGCAGG 59.319 50.000 29.34 29.34 35.16 4.85
1746 8901 0.393820 CAATTGGTTTGCCTGCAGGT 59.606 50.000 32.81 8.61 37.57 4.00
1748 8903 0.681175 ATTGGTTTGCCTGCAGGTTC 59.319 50.000 32.81 18.37 37.57 3.62
1750 8905 2.644992 GTTTGCCTGCAGGTTCGG 59.355 61.111 32.81 9.78 37.57 4.30
1752 8907 1.896660 TTTGCCTGCAGGTTCGGTC 60.897 57.895 32.81 16.13 37.57 4.79
1759 8914 0.684535 TGCAGGTTCGGTCTGATCAA 59.315 50.000 0.00 0.00 34.36 2.57
1770 8925 1.277557 GTCTGATCAAGGCCAGTCTGT 59.722 52.381 5.01 0.00 0.00 3.41
1771 8926 2.497675 GTCTGATCAAGGCCAGTCTGTA 59.502 50.000 5.01 0.00 0.00 2.74
1772 8927 2.762887 TCTGATCAAGGCCAGTCTGTAG 59.237 50.000 5.01 0.00 0.00 2.74
1773 8928 2.499289 CTGATCAAGGCCAGTCTGTAGT 59.501 50.000 5.01 0.00 0.00 2.73
1774 8929 2.234661 TGATCAAGGCCAGTCTGTAGTG 59.765 50.000 5.01 0.00 0.00 2.74
1775 8930 1.717032 TCAAGGCCAGTCTGTAGTGT 58.283 50.000 5.01 0.00 0.00 3.55
1785 8940 5.348997 GCCAGTCTGTAGTGTTCTGAAATAC 59.651 44.000 0.00 0.00 0.00 1.89
1805 8960 1.719600 GAATGTCTTCGCTCTGCACT 58.280 50.000 0.00 0.00 0.00 4.40
1819 8974 1.225745 GCACTTTGCCGAATCGACG 60.226 57.895 3.36 0.00 37.42 5.12
1836 8991 3.438087 TCGACGGGATTAATCCTCGTATC 59.562 47.826 32.61 24.84 46.39 2.24
1839 8994 3.056749 ACGGGATTAATCCTCGTATCTGC 60.057 47.826 32.07 16.10 45.41 4.26
1842 8997 4.246458 GGATTAATCCTCGTATCTGCACC 58.754 47.826 24.74 0.00 43.73 5.01
1846 9001 0.454600 TCCTCGTATCTGCACCGAAC 59.545 55.000 0.00 0.00 0.00 3.95
1848 9003 0.866061 CTCGTATCTGCACCGAACGG 60.866 60.000 11.83 11.83 42.03 4.44
1851 9006 2.727392 TATCTGCACCGAACGGGGG 61.727 63.158 17.19 9.79 44.66 5.40
1856 9011 4.096003 CACCGAACGGGGGCATCT 62.096 66.667 17.44 0.00 41.60 2.90
1857 9012 3.782443 ACCGAACGGGGGCATCTC 61.782 66.667 17.44 0.00 41.60 2.75
1858 9013 4.891727 CCGAACGGGGGCATCTCG 62.892 72.222 5.25 0.00 0.00 4.04
1862 9017 1.963464 GAACGGGGGCATCTCGGTTA 61.963 60.000 3.70 0.00 0.00 2.85
1870 9025 3.288092 GGGCATCTCGGTTAATTTTCCT 58.712 45.455 0.00 0.00 0.00 3.36
1887 9042 3.254093 TCCTGTCAACTCCTGGTTAGA 57.746 47.619 0.00 0.00 36.23 2.10
1888 9043 2.897969 TCCTGTCAACTCCTGGTTAGAC 59.102 50.000 0.00 0.00 36.23 2.59
1904 9059 6.350629 GGTTAGACCAAACTAACTACTCCA 57.649 41.667 15.02 0.00 46.37 3.86
1905 9060 6.944096 GGTTAGACCAAACTAACTACTCCAT 58.056 40.000 15.02 0.00 46.37 3.41
1906 9061 8.071177 GGTTAGACCAAACTAACTACTCCATA 57.929 38.462 15.02 0.00 46.37 2.74
1928 11203 9.948964 CCATATATCAGTTAAATGATCCTGACA 57.051 33.333 20.78 4.13 40.40 3.58
1943 11218 0.959867 TGACAATGCATCCACGGGTG 60.960 55.000 0.00 0.00 0.00 4.61
1953 11228 2.551644 CCACGGGTGGCTTTTAGTC 58.448 57.895 4.68 0.00 44.73 2.59
1955 11230 1.156736 CACGGGTGGCTTTTAGTCAG 58.843 55.000 0.00 0.00 25.72 3.51
1956 11231 0.036306 ACGGGTGGCTTTTAGTCAGG 59.964 55.000 0.00 0.00 25.72 3.86
1957 11232 0.676782 CGGGTGGCTTTTAGTCAGGG 60.677 60.000 0.00 0.00 25.72 4.45
1958 11233 0.404426 GGGTGGCTTTTAGTCAGGGT 59.596 55.000 0.00 0.00 25.72 4.34
1959 11234 1.534729 GGTGGCTTTTAGTCAGGGTG 58.465 55.000 0.00 0.00 25.72 4.61
2005 11283 4.990257 TCTTTTCGAGGTTCCACTATACG 58.010 43.478 0.00 0.00 0.00 3.06
2006 11284 4.701651 TCTTTTCGAGGTTCCACTATACGA 59.298 41.667 0.00 0.00 0.00 3.43
2007 11285 4.361451 TTTCGAGGTTCCACTATACGAC 57.639 45.455 0.00 0.00 0.00 4.34
2008 11286 2.292267 TCGAGGTTCCACTATACGACC 58.708 52.381 0.00 0.00 0.00 4.79
2009 11287 1.003116 CGAGGTTCCACTATACGACCG 60.003 57.143 0.00 0.00 35.56 4.79
2010 11288 1.336125 GAGGTTCCACTATACGACCGG 59.664 57.143 0.00 0.00 35.56 5.28
2011 11289 1.064463 AGGTTCCACTATACGACCGGA 60.064 52.381 9.46 0.00 35.56 5.14
2012 11290 1.750778 GGTTCCACTATACGACCGGAA 59.249 52.381 9.46 0.00 33.40 4.30
2013 11291 2.223665 GGTTCCACTATACGACCGGAAG 60.224 54.545 9.46 3.42 36.45 3.46
2014 11292 1.027357 TCCACTATACGACCGGAAGC 58.973 55.000 9.46 0.00 0.00 3.86
2015 11293 0.742505 CCACTATACGACCGGAAGCA 59.257 55.000 9.46 0.00 0.00 3.91
2016 11294 1.269102 CCACTATACGACCGGAAGCAG 60.269 57.143 9.46 0.00 0.00 4.24
2017 11295 0.384669 ACTATACGACCGGAAGCAGC 59.615 55.000 9.46 0.00 0.00 5.25
2018 11296 0.318784 CTATACGACCGGAAGCAGCC 60.319 60.000 9.46 0.00 0.00 4.85
2025 11303 3.431725 CGGAAGCAGCCGTTTCCC 61.432 66.667 9.70 0.00 46.79 3.97
2026 11304 2.034221 GGAAGCAGCCGTTTCCCT 59.966 61.111 4.27 0.00 44.50 4.20
2027 11305 2.041115 GGAAGCAGCCGTTTCCCTC 61.041 63.158 4.27 0.00 44.50 4.30
2028 11306 1.003233 GAAGCAGCCGTTTCCCTCT 60.003 57.895 0.00 0.00 0.00 3.69
2029 11307 1.301677 GAAGCAGCCGTTTCCCTCTG 61.302 60.000 0.00 0.00 0.00 3.35
2030 11308 1.768684 AAGCAGCCGTTTCCCTCTGA 61.769 55.000 0.00 0.00 0.00 3.27
2031 11309 1.302511 GCAGCCGTTTCCCTCTGAA 60.303 57.895 0.00 0.00 0.00 3.02
2032 11310 0.678048 GCAGCCGTTTCCCTCTGAAT 60.678 55.000 0.00 0.00 31.67 2.57
2033 11311 1.089920 CAGCCGTTTCCCTCTGAATG 58.910 55.000 0.00 0.00 31.67 2.67
2034 11312 0.984230 AGCCGTTTCCCTCTGAATGA 59.016 50.000 0.00 0.00 31.67 2.57
2035 11313 1.351017 AGCCGTTTCCCTCTGAATGAA 59.649 47.619 0.00 0.00 31.67 2.57
2036 11314 2.025887 AGCCGTTTCCCTCTGAATGAAT 60.026 45.455 0.00 0.00 31.67 2.57
2037 11315 2.755103 GCCGTTTCCCTCTGAATGAATT 59.245 45.455 0.00 0.00 31.67 2.17
2038 11316 3.945285 GCCGTTTCCCTCTGAATGAATTA 59.055 43.478 0.00 0.00 31.67 1.40
2039 11317 4.201920 GCCGTTTCCCTCTGAATGAATTAC 60.202 45.833 0.00 0.00 31.67 1.89
2040 11318 4.034048 CCGTTTCCCTCTGAATGAATTACG 59.966 45.833 0.00 0.00 32.31 3.18
2041 11319 4.494199 CGTTTCCCTCTGAATGAATTACGC 60.494 45.833 0.00 0.00 31.67 4.42
2042 11320 3.904800 TCCCTCTGAATGAATTACGCA 57.095 42.857 0.00 0.00 0.00 5.24
2043 11321 3.797039 TCCCTCTGAATGAATTACGCAG 58.203 45.455 0.00 0.00 0.00 5.18
2044 11322 2.289002 CCCTCTGAATGAATTACGCAGC 59.711 50.000 0.00 0.00 0.00 5.25
2045 11323 3.201290 CCTCTGAATGAATTACGCAGCT 58.799 45.455 0.00 0.00 0.00 4.24
2046 11324 3.247173 CCTCTGAATGAATTACGCAGCTC 59.753 47.826 0.00 0.00 0.00 4.09
2047 11325 4.118410 CTCTGAATGAATTACGCAGCTCT 58.882 43.478 0.00 0.00 0.00 4.09
2048 11326 4.115516 TCTGAATGAATTACGCAGCTCTC 58.884 43.478 0.00 0.00 0.00 3.20
2049 11327 3.198068 TGAATGAATTACGCAGCTCTCC 58.802 45.455 0.00 0.00 0.00 3.71
2050 11328 3.118629 TGAATGAATTACGCAGCTCTCCT 60.119 43.478 0.00 0.00 0.00 3.69
2051 11329 2.299993 TGAATTACGCAGCTCTCCTG 57.700 50.000 0.00 0.00 44.67 3.86
2059 11337 3.223661 CAGCTCTCCTGCGTTTCTT 57.776 52.632 0.00 0.00 38.13 2.52
2060 11338 1.517242 CAGCTCTCCTGCGTTTCTTT 58.483 50.000 0.00 0.00 38.13 2.52
2061 11339 1.462670 CAGCTCTCCTGCGTTTCTTTC 59.537 52.381 0.00 0.00 38.13 2.62
2062 11340 1.070758 AGCTCTCCTGCGTTTCTTTCA 59.929 47.619 0.00 0.00 38.13 2.69
2063 11341 1.873591 GCTCTCCTGCGTTTCTTTCAA 59.126 47.619 0.00 0.00 0.00 2.69
2064 11342 2.290641 GCTCTCCTGCGTTTCTTTCAAA 59.709 45.455 0.00 0.00 0.00 2.69
2065 11343 3.243068 GCTCTCCTGCGTTTCTTTCAAAA 60.243 43.478 0.00 0.00 0.00 2.44
2066 11344 4.733523 GCTCTCCTGCGTTTCTTTCAAAAA 60.734 41.667 0.00 0.00 0.00 1.94
2094 11372 6.575162 ACTGGAAGAAATTTCATGTGTACC 57.425 37.500 19.99 11.50 37.43 3.34
2097 11375 6.068010 TGGAAGAAATTTCATGTGTACCAGT 58.932 36.000 19.99 0.00 0.00 4.00
2099 11377 5.964958 AGAAATTTCATGTGTACCAGTGG 57.035 39.130 19.99 7.91 0.00 4.00
2100 11378 5.385198 AGAAATTTCATGTGTACCAGTGGT 58.615 37.500 20.91 20.91 40.16 4.16
2101 11379 5.241506 AGAAATTTCATGTGTACCAGTGGTG 59.758 40.000 25.64 6.98 36.19 4.17
2104 11382 2.844946 TCATGTGTACCAGTGGTGTTG 58.155 47.619 25.64 13.85 36.19 3.33
2105 11383 2.171659 TCATGTGTACCAGTGGTGTTGT 59.828 45.455 25.64 4.21 36.19 3.32
2106 11384 2.791347 TGTGTACCAGTGGTGTTGTT 57.209 45.000 25.64 0.00 36.19 2.83
2116 11394 6.512297 ACCAGTGGTGTTGTTTGAAAATATC 58.488 36.000 15.86 0.00 32.98 1.63
2120 11398 7.656948 CAGTGGTGTTGTTTGAAAATATCCAAT 59.343 33.333 0.00 0.00 0.00 3.16
2176 11454 2.188837 GCTAACCGCTAATGCCAAAC 57.811 50.000 0.00 0.00 35.36 2.93
2237 11517 6.154192 TGCAAATTTGATAAGCTATGGGTCAA 59.846 34.615 22.31 0.00 0.00 3.18
2238 11518 7.147689 TGCAAATTTGATAAGCTATGGGTCAAT 60.148 33.333 22.31 0.00 0.00 2.57
2248 11528 6.859112 AGCTATGGGTCAATCGATATTACT 57.141 37.500 0.00 0.00 0.00 2.24
2250 11530 7.324178 AGCTATGGGTCAATCGATATTACTTC 58.676 38.462 0.00 0.00 0.00 3.01
2269 11549 6.619801 ACTTCGAAGTTTAGTTGCTGAATT 57.380 33.333 24.93 0.00 35.21 2.17
2273 11553 9.612620 CTTCGAAGTTTAGTTGCTGAATTTATT 57.387 29.630 17.24 0.00 0.00 1.40
2307 11588 7.872993 AGTTGAATATACGAACCAGTGGATATG 59.127 37.037 18.40 2.65 0.00 1.78
2308 11589 7.297936 TGAATATACGAACCAGTGGATATGT 57.702 36.000 18.40 9.05 0.00 2.29
2378 11659 8.757164 ATGTAGGCTTTGTAAACATTTTAAGC 57.243 30.769 8.18 8.18 0.00 3.09
2379 11660 7.717568 TGTAGGCTTTGTAAACATTTTAAGCA 58.282 30.769 15.41 0.00 0.00 3.91
2380 11661 8.198109 TGTAGGCTTTGTAAACATTTTAAGCAA 58.802 29.630 15.41 4.47 0.00 3.91
2381 11662 7.477144 AGGCTTTGTAAACATTTTAAGCAAC 57.523 32.000 15.41 3.75 0.00 4.17
2398 11679 5.077134 AGCAACAATAATCTCAAAAGCCC 57.923 39.130 0.00 0.00 0.00 5.19
2399 11680 3.859386 GCAACAATAATCTCAAAAGCCCG 59.141 43.478 0.00 0.00 0.00 6.13
2411 11692 1.394618 AAAGCCCGTACACAAGCAAA 58.605 45.000 0.00 0.00 0.00 3.68
2423 11704 3.824443 ACACAAGCAAATGGGGTAGTAAC 59.176 43.478 0.00 0.00 0.00 2.50
2426 11707 3.366052 AGCAAATGGGGTAGTAACTGG 57.634 47.619 0.00 0.00 0.00 4.00
2428 11709 2.014128 CAAATGGGGTAGTAACTGGCG 58.986 52.381 0.00 0.00 0.00 5.69
2429 11710 0.107361 AATGGGGTAGTAACTGGCGC 60.107 55.000 0.00 0.00 0.00 6.53
2430 11711 1.979619 ATGGGGTAGTAACTGGCGCC 61.980 60.000 22.73 22.73 34.96 6.53
2431 11712 2.202837 GGGTAGTAACTGGCGCCG 60.203 66.667 23.90 18.98 0.00 6.46
2432 11713 2.202837 GGTAGTAACTGGCGCCGG 60.203 66.667 33.73 33.73 0.00 6.13
2434 11715 1.079612 GTAGTAACTGGCGCCGGTT 60.080 57.895 45.19 45.19 46.12 4.44
2436 11717 0.894141 TAGTAACTGGCGCCGGTTAA 59.106 50.000 46.23 34.87 45.74 2.01
2437 11718 0.671472 AGTAACTGGCGCCGGTTAAC 60.671 55.000 46.23 38.16 45.74 2.01
2438 11719 1.375780 TAACTGGCGCCGGTTAACC 60.376 57.895 44.11 15.13 42.66 2.85
2439 11720 2.109517 TAACTGGCGCCGGTTAACCA 62.110 55.000 44.11 31.16 42.66 3.67
2440 11721 2.437716 CTGGCGCCGGTTAACCAT 60.438 61.111 27.83 0.00 35.14 3.55
2441 11722 2.748251 TGGCGCCGGTTAACCATG 60.748 61.111 23.90 15.08 35.14 3.66
2450 11731 2.232452 CCGGTTAACCATGCATCCAAAA 59.768 45.455 24.14 0.00 35.14 2.44
2451 11732 3.510719 CGGTTAACCATGCATCCAAAAG 58.489 45.455 24.14 0.00 35.14 2.27
2452 11733 3.056891 CGGTTAACCATGCATCCAAAAGT 60.057 43.478 24.14 0.00 35.14 2.66
2490 11771 4.597507 TCATTTTGGAAGAGGAGTGTAGGT 59.402 41.667 0.00 0.00 0.00 3.08
2492 11773 2.992847 TGGAAGAGGAGTGTAGGTCA 57.007 50.000 0.00 0.00 0.00 4.02
2507 11788 2.845659 AGGTCACACTCATCCCCAATA 58.154 47.619 0.00 0.00 0.00 1.90
2510 11791 3.885297 GGTCACACTCATCCCCAATAATG 59.115 47.826 0.00 0.00 0.00 1.90
2537 11818 9.636965 GTGACAAAATTGTTTAGAATGCTTTTC 57.363 29.630 0.00 0.00 42.43 2.29
2551 11884 7.308435 AGAATGCTTTTCATTAGTAGTGTTGC 58.692 34.615 3.37 0.00 44.95 4.17
2623 11957 6.378280 AGGGGATGTGAATTTTCATGTACTTC 59.622 38.462 0.00 0.00 39.73 3.01
2636 11970 1.202675 TGTACTTCGGTTGTTGGGTCC 60.203 52.381 0.00 0.00 0.00 4.46
2637 11971 0.397564 TACTTCGGTTGTTGGGTCCC 59.602 55.000 0.00 0.00 0.00 4.46
2641 11975 2.600470 GGTTGTTGGGTCCCAGCC 60.600 66.667 21.14 13.36 33.72 4.85
2649 11983 1.198759 TGGGTCCCAGCCAAGTACTC 61.199 60.000 6.47 0.00 43.74 2.59
2651 11985 1.602771 GTCCCAGCCAAGTACTCCC 59.397 63.158 0.00 0.00 0.00 4.30
2655 11989 0.539051 CCAGCCAAGTACTCCCTCTG 59.461 60.000 0.00 1.87 0.00 3.35
2659 11993 3.068873 CAGCCAAGTACTCCCTCTGTATC 59.931 52.174 0.00 0.00 0.00 2.24
2758 12095 1.305886 TAGAGGTGCTCCCAGTCCTA 58.694 55.000 0.00 0.00 34.66 2.94
2759 12096 0.413832 AGAGGTGCTCCCAGTCCTAA 59.586 55.000 0.00 0.00 34.66 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.178451 TCCTAGAGATTTCAACATGTGACTACA 59.822 37.037 0.00 0.00 41.89 2.74
3 4 7.718334 TCCTAGAGATTTCAACATGTGACTA 57.282 36.000 0.00 0.00 35.39 2.59
5 6 7.064016 GTCTTCCTAGAGATTTCAACATGTGAC 59.936 40.741 0.00 0.00 35.39 3.67
6 7 7.099764 GTCTTCCTAGAGATTTCAACATGTGA 58.900 38.462 0.00 0.00 0.00 3.58
7 8 6.875726 TGTCTTCCTAGAGATTTCAACATGTG 59.124 38.462 0.00 0.00 0.00 3.21
8 9 7.009179 TGTCTTCCTAGAGATTTCAACATGT 57.991 36.000 0.00 0.00 0.00 3.21
9 10 7.912056 TTGTCTTCCTAGAGATTTCAACATG 57.088 36.000 0.00 0.00 0.00 3.21
20 21 9.250624 CGTTCCTAAATATTTGTCTTCCTAGAG 57.749 37.037 11.05 0.00 0.00 2.43
21 22 8.202137 CCGTTCCTAAATATTTGTCTTCCTAGA 58.798 37.037 11.05 0.00 0.00 2.43
22 23 8.202137 TCCGTTCCTAAATATTTGTCTTCCTAG 58.798 37.037 11.05 0.00 0.00 3.02
23 24 8.081517 TCCGTTCCTAAATATTTGTCTTCCTA 57.918 34.615 11.05 0.00 0.00 2.94
24 25 6.954232 TCCGTTCCTAAATATTTGTCTTCCT 58.046 36.000 11.05 0.00 0.00 3.36
25 26 7.255139 CCATCCGTTCCTAAATATTTGTCTTCC 60.255 40.741 11.05 0.00 0.00 3.46
26 27 7.497909 TCCATCCGTTCCTAAATATTTGTCTTC 59.502 37.037 11.05 0.00 0.00 2.87
27 28 7.343357 TCCATCCGTTCCTAAATATTTGTCTT 58.657 34.615 11.05 0.00 0.00 3.01
28 29 6.895782 TCCATCCGTTCCTAAATATTTGTCT 58.104 36.000 11.05 0.00 0.00 3.41
29 30 6.766467 ACTCCATCCGTTCCTAAATATTTGTC 59.234 38.462 11.05 0.00 0.00 3.18
30 31 6.659824 ACTCCATCCGTTCCTAAATATTTGT 58.340 36.000 11.05 0.00 0.00 2.83
31 32 7.713507 TGTACTCCATCCGTTCCTAAATATTTG 59.286 37.037 11.05 1.40 0.00 2.32
32 33 7.798071 TGTACTCCATCCGTTCCTAAATATTT 58.202 34.615 5.89 5.89 0.00 1.40
33 34 7.369551 TGTACTCCATCCGTTCCTAAATATT 57.630 36.000 0.00 0.00 0.00 1.28
34 35 6.989155 TGTACTCCATCCGTTCCTAAATAT 57.011 37.500 0.00 0.00 0.00 1.28
35 36 6.325545 ACATGTACTCCATCCGTTCCTAAATA 59.674 38.462 0.00 0.00 0.00 1.40
36 37 5.130477 ACATGTACTCCATCCGTTCCTAAAT 59.870 40.000 0.00 0.00 0.00 1.40
37 38 4.468510 ACATGTACTCCATCCGTTCCTAAA 59.531 41.667 0.00 0.00 0.00 1.85
38 39 4.028131 ACATGTACTCCATCCGTTCCTAA 58.972 43.478 0.00 0.00 0.00 2.69
39 40 3.635373 GACATGTACTCCATCCGTTCCTA 59.365 47.826 0.00 0.00 0.00 2.94
40 41 2.431057 GACATGTACTCCATCCGTTCCT 59.569 50.000 0.00 0.00 0.00 3.36
41 42 2.167693 TGACATGTACTCCATCCGTTCC 59.832 50.000 0.00 0.00 0.00 3.62
42 43 3.520290 TGACATGTACTCCATCCGTTC 57.480 47.619 0.00 0.00 0.00 3.95
43 44 3.973206 TTGACATGTACTCCATCCGTT 57.027 42.857 0.00 0.00 0.00 4.44
44 45 3.973206 TTTGACATGTACTCCATCCGT 57.027 42.857 0.00 0.00 0.00 4.69
45 46 5.818136 ATTTTTGACATGTACTCCATCCG 57.182 39.130 0.00 0.00 0.00 4.18
46 47 7.865706 ACTATTTTTGACATGTACTCCATCC 57.134 36.000 0.00 0.00 0.00 3.51
83 84 9.638239 AATGTGTAAACCTGCAAAATATTACTG 57.362 29.630 0.00 0.00 0.00 2.74
102 103 9.771534 TTGTGCAAGCTATACATATAATGTGTA 57.228 29.630 2.83 1.99 44.60 2.90
150 151 5.253330 TGATGGACCAAACCAGATAGTTTC 58.747 41.667 0.00 0.00 43.49 2.78
160 161 3.222603 ACAAGAGTTGATGGACCAAACC 58.777 45.455 0.00 0.00 0.00 3.27
161 162 3.882888 TGACAAGAGTTGATGGACCAAAC 59.117 43.478 0.00 0.00 0.00 2.93
171 172 7.040755 TGAGTTTTTGACTTTGACAAGAGTTGA 60.041 33.333 0.00 0.00 39.19 3.18
174 175 6.817765 TGAGTTTTTGACTTTGACAAGAGT 57.182 33.333 3.60 3.60 39.19 3.24
186 187 8.130307 ACAAATGTAGCATTTGAGTTTTTGAC 57.870 30.769 29.67 0.00 40.42 3.18
205 206 8.870160 TTGACCTTGATAGACAAAAACAAATG 57.130 30.769 0.00 0.00 38.08 2.32
258 259 6.421202 CGCCTCATTATTAGAACCTCTTACAC 59.579 42.308 0.00 0.00 0.00 2.90
270 271 0.792640 CGCTGCCGCCTCATTATTAG 59.207 55.000 0.00 0.00 0.00 1.73
295 296 0.036765 TTGTGGCGGCTAGGTTGTAG 60.037 55.000 11.43 0.00 0.00 2.74
302 303 2.083774 TCAAATCTTTGTGGCGGCTAG 58.916 47.619 11.43 2.62 39.18 3.42
307 308 5.610124 CGATTTTTGTCAAATCTTTGTGGCG 60.610 40.000 0.00 0.00 39.18 5.69
333 334 8.046107 TGAAGTTTTCATTCTCACCCAATTTTT 58.954 29.630 0.00 0.00 34.08 1.94
377 378 8.445275 AACATTAAAATTTCACCAAGTTTCCC 57.555 30.769 0.00 0.00 34.53 3.97
383 384 9.927668 ACTCCATAACATTAAAATTTCACCAAG 57.072 29.630 0.00 0.00 0.00 3.61
534 538 9.820229 TTTTCTACAAGTGAAAACATATTAGCG 57.180 29.630 0.00 0.00 38.15 4.26
655 681 6.489700 TGGATGCTTAAAATGAGTGTCTTCAA 59.510 34.615 0.00 0.00 0.00 2.69
657 683 6.372659 TCTGGATGCTTAAAATGAGTGTCTTC 59.627 38.462 0.00 0.00 0.00 2.87
679 705 3.992427 GCCTTTTTGAAGGAGCAAATCTG 59.008 43.478 9.29 0.00 42.62 2.90
687 713 7.256286 CAAATCTAGATGCCTTTTTGAAGGAG 58.744 38.462 5.86 0.00 42.62 3.69
688 714 6.350445 GCAAATCTAGATGCCTTTTTGAAGGA 60.350 38.462 15.24 0.00 42.62 3.36
689 715 5.809051 GCAAATCTAGATGCCTTTTTGAAGG 59.191 40.000 15.24 0.82 42.87 3.46
690 716 6.628185 AGCAAATCTAGATGCCTTTTTGAAG 58.372 36.000 13.51 0.00 43.57 3.02
691 717 6.350445 GGAGCAAATCTAGATGCCTTTTTGAA 60.350 38.462 13.51 0.00 43.57 2.69
692 718 5.126061 GGAGCAAATCTAGATGCCTTTTTGA 59.874 40.000 13.51 0.00 43.57 2.69
693 719 5.126707 AGGAGCAAATCTAGATGCCTTTTTG 59.873 40.000 13.51 11.14 43.57 2.44
694 720 5.267587 AGGAGCAAATCTAGATGCCTTTTT 58.732 37.500 13.51 0.00 43.57 1.94
695 721 4.864726 AGGAGCAAATCTAGATGCCTTTT 58.135 39.130 13.51 0.00 43.57 2.27
696 722 4.516652 AGGAGCAAATCTAGATGCCTTT 57.483 40.909 13.51 0.00 43.57 3.11
697 723 4.080129 TGAAGGAGCAAATCTAGATGCCTT 60.080 41.667 13.51 15.61 43.57 4.35
698 724 3.457380 TGAAGGAGCAAATCTAGATGCCT 59.543 43.478 13.51 9.31 43.57 4.75
699 725 3.813443 TGAAGGAGCAAATCTAGATGCC 58.187 45.455 13.51 7.47 43.57 4.40
700 726 5.824904 TTTGAAGGAGCAAATCTAGATGC 57.175 39.130 5.86 8.16 42.87 3.91
701 727 7.256286 CCTTTTTGAAGGAGCAAATCTAGATG 58.744 38.462 5.86 0.00 42.62 2.90
702 728 6.127507 GCCTTTTTGAAGGAGCAAATCTAGAT 60.128 38.462 9.29 0.00 42.62 1.98
703 729 5.183904 GCCTTTTTGAAGGAGCAAATCTAGA 59.816 40.000 9.29 0.00 42.62 2.43
704 730 5.047802 TGCCTTTTTGAAGGAGCAAATCTAG 60.048 40.000 9.29 0.00 42.62 2.43
705 731 4.832266 TGCCTTTTTGAAGGAGCAAATCTA 59.168 37.500 9.29 0.00 42.62 1.98
706 732 3.642848 TGCCTTTTTGAAGGAGCAAATCT 59.357 39.130 9.29 0.00 42.62 2.40
707 733 3.993920 TGCCTTTTTGAAGGAGCAAATC 58.006 40.909 9.29 0.00 42.62 2.17
708 734 4.285260 AGATGCCTTTTTGAAGGAGCAAAT 59.715 37.500 9.29 0.00 42.62 2.32
709 735 3.642848 AGATGCCTTTTTGAAGGAGCAAA 59.357 39.130 9.29 0.00 42.62 3.68
710 736 3.233507 AGATGCCTTTTTGAAGGAGCAA 58.766 40.909 9.29 0.00 42.62 3.91
711 737 2.880443 AGATGCCTTTTTGAAGGAGCA 58.120 42.857 9.29 1.57 42.62 4.26
712 738 4.265073 TCTAGATGCCTTTTTGAAGGAGC 58.735 43.478 9.29 0.00 42.62 4.70
713 739 7.256286 CAAATCTAGATGCCTTTTTGAAGGAG 58.744 38.462 5.86 0.00 42.62 3.69
714 740 6.350445 GCAAATCTAGATGCCTTTTTGAAGGA 60.350 38.462 15.24 0.00 42.62 3.36
715 741 5.809051 GCAAATCTAGATGCCTTTTTGAAGG 59.191 40.000 15.24 0.82 42.87 3.46
716 742 6.309737 GTGCAAATCTAGATGCCTTTTTGAAG 59.690 38.462 14.29 0.00 41.87 3.02
717 743 6.158598 GTGCAAATCTAGATGCCTTTTTGAA 58.841 36.000 14.29 3.79 41.87 2.69
718 744 5.243507 TGTGCAAATCTAGATGCCTTTTTGA 59.756 36.000 14.29 0.96 41.87 2.69
719 745 5.472148 TGTGCAAATCTAGATGCCTTTTTG 58.528 37.500 14.29 11.54 41.87 2.44
720 746 5.726980 TGTGCAAATCTAGATGCCTTTTT 57.273 34.783 14.29 0.00 41.87 1.94
721 747 5.244626 ACTTGTGCAAATCTAGATGCCTTTT 59.755 36.000 14.29 0.00 41.87 2.27
722 748 4.768968 ACTTGTGCAAATCTAGATGCCTTT 59.231 37.500 14.29 0.07 41.87 3.11
723 749 4.157289 CACTTGTGCAAATCTAGATGCCTT 59.843 41.667 14.29 0.00 41.87 4.35
724 750 3.693085 CACTTGTGCAAATCTAGATGCCT 59.307 43.478 14.29 0.00 41.87 4.75
725 751 3.733077 GCACTTGTGCAAATCTAGATGCC 60.733 47.826 19.36 7.56 41.87 4.40
726 752 3.432782 GCACTTGTGCAAATCTAGATGC 58.567 45.455 19.36 8.73 42.86 3.91
727 753 3.486375 CCGCACTTGTGCAAATCTAGATG 60.486 47.826 22.97 0.00 34.41 2.90
728 754 2.679837 CCGCACTTGTGCAAATCTAGAT 59.320 45.455 22.97 0.00 34.41 1.98
729 755 2.076100 CCGCACTTGTGCAAATCTAGA 58.924 47.619 22.97 0.00 34.41 2.43
730 756 1.131126 CCCGCACTTGTGCAAATCTAG 59.869 52.381 22.97 6.98 34.41 2.43
731 757 1.164411 CCCGCACTTGTGCAAATCTA 58.836 50.000 22.97 0.00 34.41 1.98
732 758 0.823356 ACCCGCACTTGTGCAAATCT 60.823 50.000 22.97 0.60 34.41 2.40
733 759 0.878416 TACCCGCACTTGTGCAAATC 59.122 50.000 22.97 0.00 34.41 2.17
734 760 1.323412 TTACCCGCACTTGTGCAAAT 58.677 45.000 22.97 11.06 34.41 2.32
735 761 1.103803 TTTACCCGCACTTGTGCAAA 58.896 45.000 22.97 13.72 34.41 3.68
736 762 0.382515 GTTTACCCGCACTTGTGCAA 59.617 50.000 22.97 8.92 34.41 4.08
737 763 0.748367 TGTTTACCCGCACTTGTGCA 60.748 50.000 22.97 3.27 34.41 4.57
738 764 0.040425 CTGTTTACCCGCACTTGTGC 60.040 55.000 15.01 15.01 0.00 4.57
739 765 1.263217 GTCTGTTTACCCGCACTTGTG 59.737 52.381 0.00 0.00 0.00 3.33
740 766 1.589803 GTCTGTTTACCCGCACTTGT 58.410 50.000 0.00 0.00 0.00 3.16
741 767 0.511221 CGTCTGTTTACCCGCACTTG 59.489 55.000 0.00 0.00 0.00 3.16
742 768 0.390124 TCGTCTGTTTACCCGCACTT 59.610 50.000 0.00 0.00 0.00 3.16
743 769 0.319297 GTCGTCTGTTTACCCGCACT 60.319 55.000 0.00 0.00 0.00 4.40
744 770 0.598158 TGTCGTCTGTTTACCCGCAC 60.598 55.000 0.00 0.00 0.00 5.34
745 771 0.598158 GTGTCGTCTGTTTACCCGCA 60.598 55.000 0.00 0.00 0.00 5.69
746 772 0.598158 TGTGTCGTCTGTTTACCCGC 60.598 55.000 0.00 0.00 0.00 6.13
747 773 1.855513 TTGTGTCGTCTGTTTACCCG 58.144 50.000 0.00 0.00 0.00 5.28
748 774 4.823790 AATTTGTGTCGTCTGTTTACCC 57.176 40.909 0.00 0.00 0.00 3.69
749 775 5.812652 TCAAATTTGTGTCGTCTGTTTACC 58.187 37.500 17.47 0.00 0.00 2.85
750 776 6.359617 CCATCAAATTTGTGTCGTCTGTTTAC 59.640 38.462 17.47 0.00 0.00 2.01
751 777 6.434596 CCATCAAATTTGTGTCGTCTGTTTA 58.565 36.000 17.47 0.00 0.00 2.01
752 778 5.280945 CCATCAAATTTGTGTCGTCTGTTT 58.719 37.500 17.47 0.00 0.00 2.83
753 779 4.261572 CCCATCAAATTTGTGTCGTCTGTT 60.262 41.667 17.47 0.00 0.00 3.16
754 780 3.253188 CCCATCAAATTTGTGTCGTCTGT 59.747 43.478 17.47 0.00 0.00 3.41
755 781 3.501828 TCCCATCAAATTTGTGTCGTCTG 59.498 43.478 17.47 5.73 0.00 3.51
756 782 3.502211 GTCCCATCAAATTTGTGTCGTCT 59.498 43.478 17.47 0.00 0.00 4.18
757 783 3.666902 CGTCCCATCAAATTTGTGTCGTC 60.667 47.826 17.47 5.78 0.00 4.20
758 784 2.225491 CGTCCCATCAAATTTGTGTCGT 59.775 45.455 17.47 0.00 0.00 4.34
775 801 1.001158 TCAACGAAAATTTGGCCGTCC 60.001 47.619 11.99 0.00 33.84 4.79
785 811 4.082125 AGGCTCCTTTGATCAACGAAAAT 58.918 39.130 13.20 0.00 0.00 1.82
786 812 3.486383 AGGCTCCTTTGATCAACGAAAA 58.514 40.909 13.20 0.00 0.00 2.29
790 816 1.339055 TGGAGGCTCCTTTGATCAACG 60.339 52.381 32.28 6.27 37.46 4.10
809 835 3.426695 GGCCGTCTCATCAAATTTGTCTG 60.427 47.826 17.47 15.31 0.00 3.51
812 838 2.513753 TGGCCGTCTCATCAAATTTGT 58.486 42.857 17.47 3.04 0.00 2.83
833 859 7.598278 AGTACAATCAAATTTTATCGCACCAA 58.402 30.769 0.00 0.00 0.00 3.67
848 874 4.221924 TCAAGATCCACCGAGTACAATCAA 59.778 41.667 0.00 0.00 0.00 2.57
854 880 4.608951 GTGTATCAAGATCCACCGAGTAC 58.391 47.826 0.00 0.00 0.00 2.73
878 904 1.304630 TGGGACGACGGGAAGATGA 60.305 57.895 0.00 0.00 0.00 2.92
879 905 1.141881 CTGGGACGACGGGAAGATG 59.858 63.158 0.00 0.00 0.00 2.90
891 917 2.359531 CCGACAGAGATAAGACTGGGAC 59.640 54.545 0.00 0.00 38.30 4.46
968 8041 2.028484 GTTGTCGTCCTGGTGCGA 59.972 61.111 10.85 10.85 34.54 5.10
969 8042 3.403057 CGTTGTCGTCCTGGTGCG 61.403 66.667 7.00 7.00 0.00 5.34
970 8043 0.108992 TATCGTTGTCGTCCTGGTGC 60.109 55.000 0.00 0.00 38.33 5.01
971 8044 1.471287 TCTATCGTTGTCGTCCTGGTG 59.529 52.381 0.00 0.00 38.33 4.17
973 8046 2.732366 CATCTATCGTTGTCGTCCTGG 58.268 52.381 0.00 0.00 38.33 4.45
974 8047 2.120232 GCATCTATCGTTGTCGTCCTG 58.880 52.381 0.00 0.00 38.33 3.86
975 8048 1.268589 CGCATCTATCGTTGTCGTCCT 60.269 52.381 0.00 0.00 38.33 3.85
976 8049 1.121240 CGCATCTATCGTTGTCGTCC 58.879 55.000 0.00 0.00 38.33 4.79
977 8050 1.121240 CCGCATCTATCGTTGTCGTC 58.879 55.000 0.00 0.00 38.33 4.20
991 8091 0.312416 TTTGCTTGTTTACGCCGCAT 59.688 45.000 0.00 0.00 0.00 4.73
1007 8111 0.310854 GGTGCTTTCCGGTCACTTTG 59.689 55.000 0.00 0.00 0.00 2.77
1035 8139 0.250553 TCGCGGACATTGGTTTTCCT 60.251 50.000 6.13 0.00 41.38 3.36
1046 8150 0.375454 CAAAACAGTTGTCGCGGACA 59.625 50.000 6.13 6.79 41.09 4.02
1056 8160 0.182775 AGGTCCGGAGCAAAACAGTT 59.817 50.000 33.52 9.20 0.00 3.16
1076 8180 1.113517 TATACAGGACGGAGGCTGGC 61.114 60.000 0.00 0.00 0.00 4.85
1103 8209 0.905337 AGAAAGGAGGTGGGACGGAG 60.905 60.000 0.00 0.00 0.00 4.63
1128 8236 4.365899 TGATTGATGCTTGTCTTGATGC 57.634 40.909 0.00 0.00 0.00 3.91
1135 8251 4.669318 CTGTTGGATGATTGATGCTTGTC 58.331 43.478 0.00 0.00 0.00 3.18
1174 8292 1.589716 GGGTGTGGATCTTGTGCTGC 61.590 60.000 0.00 0.00 0.00 5.25
1184 8302 0.990282 ATGGCTAGCAGGGTGTGGAT 60.990 55.000 18.24 0.00 0.00 3.41
1233 8358 3.367395 CGGTAAAGCTGACTGACTGATCA 60.367 47.826 0.00 0.00 0.00 2.92
1245 8370 1.588674 TTGTGGACACGGTAAAGCTG 58.411 50.000 0.00 0.00 0.00 4.24
1246 8371 1.944709 GTTTGTGGACACGGTAAAGCT 59.055 47.619 0.00 0.00 0.00 3.74
1247 8372 1.333435 CGTTTGTGGACACGGTAAAGC 60.333 52.381 0.00 0.00 32.58 3.51
1248 8373 1.333435 GCGTTTGTGGACACGGTAAAG 60.333 52.381 0.00 0.00 36.88 1.85
1250 8375 0.461516 TGCGTTTGTGGACACGGTAA 60.462 50.000 0.00 0.00 36.88 2.85
1257 8382 1.000163 TCTCTCTCTGCGTTTGTGGAC 60.000 52.381 0.00 0.00 0.00 4.02
1263 8388 0.523966 CGACCTCTCTCTCTGCGTTT 59.476 55.000 0.00 0.00 0.00 3.60
1278 8403 2.588877 CACCCGCCATGATCGACC 60.589 66.667 8.56 0.00 0.00 4.79
1279 8404 3.272334 GCACCCGCCATGATCGAC 61.272 66.667 8.56 0.00 0.00 4.20
1280 8405 4.889856 CGCACCCGCCATGATCGA 62.890 66.667 8.56 0.00 33.11 3.59
1634 8766 3.311106 CGTGGTATATTACAATCCGCGT 58.689 45.455 4.92 0.00 43.92 6.01
1635 8767 3.965209 CGTGGTATATTACAATCCGCG 57.035 47.619 0.00 0.00 43.59 6.46
1638 8770 6.384224 TCATCGTCGTGGTATATTACAATCC 58.616 40.000 0.00 0.00 0.00 3.01
1672 8807 8.489489 AGGTGATATAAACTCATGTGACAGAAT 58.511 33.333 0.94 0.00 0.00 2.40
1685 8820 7.995488 CCATCAAAAGAGGAGGTGATATAAACT 59.005 37.037 0.00 0.00 0.00 2.66
1694 8829 1.635487 TCCCCATCAAAAGAGGAGGTG 59.365 52.381 0.00 0.00 0.00 4.00
1695 8830 2.059756 TCCCCATCAAAAGAGGAGGT 57.940 50.000 0.00 0.00 0.00 3.85
1699 8834 3.214328 CCGTATTCCCCATCAAAAGAGG 58.786 50.000 0.00 0.00 0.00 3.69
1702 8837 1.681264 GCCCGTATTCCCCATCAAAAG 59.319 52.381 0.00 0.00 0.00 2.27
1703 8838 1.770294 GCCCGTATTCCCCATCAAAA 58.230 50.000 0.00 0.00 0.00 2.44
1705 8840 1.147376 CGCCCGTATTCCCCATCAA 59.853 57.895 0.00 0.00 0.00 2.57
1709 8863 2.364579 AGACGCCCGTATTCCCCA 60.365 61.111 0.00 0.00 0.00 4.96
1711 8865 0.106149 ATTGAGACGCCCGTATTCCC 59.894 55.000 0.00 0.00 0.00 3.97
1717 8871 0.536460 AAACCAATTGAGACGCCCGT 60.536 50.000 7.12 0.00 0.00 5.28
1718 8872 0.109781 CAAACCAATTGAGACGCCCG 60.110 55.000 7.12 0.00 41.85 6.13
1721 8875 0.598065 AGGCAAACCAATTGAGACGC 59.402 50.000 7.12 4.25 41.85 5.19
1725 8879 1.337447 CCTGCAGGCAAACCAATTGAG 60.337 52.381 22.33 0.00 41.85 3.02
1739 8894 0.247460 TGATCAGACCGAACCTGCAG 59.753 55.000 6.78 6.78 0.00 4.41
1745 8900 0.036388 TGGCCTTGATCAGACCGAAC 60.036 55.000 3.32 0.00 0.00 3.95
1746 8901 0.250234 CTGGCCTTGATCAGACCGAA 59.750 55.000 3.32 0.00 33.11 4.30
1748 8903 0.460987 GACTGGCCTTGATCAGACCG 60.461 60.000 3.32 0.00 35.20 4.79
1750 8905 1.277557 ACAGACTGGCCTTGATCAGAC 59.722 52.381 3.32 0.00 35.20 3.51
1752 8907 2.499289 ACTACAGACTGGCCTTGATCAG 59.501 50.000 3.32 0.00 37.07 2.90
1759 8914 1.620819 CAGAACACTACAGACTGGCCT 59.379 52.381 3.32 0.00 0.00 5.19
1764 8919 6.570672 TCGTATTTCAGAACACTACAGACT 57.429 37.500 0.00 0.00 0.00 3.24
1770 8925 8.462143 GAAGACATTCGTATTTCAGAACACTA 57.538 34.615 0.00 0.00 0.00 2.74
1771 8926 7.352719 GAAGACATTCGTATTTCAGAACACT 57.647 36.000 0.00 0.00 0.00 3.55
1824 8979 2.578786 TCGGTGCAGATACGAGGATTA 58.421 47.619 0.00 0.00 32.29 1.75
1839 8994 4.096003 AGATGCCCCCGTTCGGTG 62.096 66.667 10.36 0.00 0.00 4.94
1842 8997 4.891727 CCGAGATGCCCCCGTTCG 62.892 72.222 0.00 0.00 0.00 3.95
1846 9001 0.179029 AATTAACCGAGATGCCCCCG 60.179 55.000 0.00 0.00 0.00 5.73
1848 9003 2.361119 GGAAAATTAACCGAGATGCCCC 59.639 50.000 0.00 0.00 0.00 5.80
1851 9006 4.394920 TGACAGGAAAATTAACCGAGATGC 59.605 41.667 0.00 0.00 0.00 3.91
1852 9007 6.149474 AGTTGACAGGAAAATTAACCGAGATG 59.851 38.462 0.00 0.00 0.00 2.90
1853 9008 6.238648 AGTTGACAGGAAAATTAACCGAGAT 58.761 36.000 0.00 0.00 0.00 2.75
1854 9009 5.617252 AGTTGACAGGAAAATTAACCGAGA 58.383 37.500 0.00 0.00 0.00 4.04
1855 9010 5.106673 GGAGTTGACAGGAAAATTAACCGAG 60.107 44.000 0.00 0.00 0.00 4.63
1856 9011 4.758165 GGAGTTGACAGGAAAATTAACCGA 59.242 41.667 0.00 0.00 0.00 4.69
1857 9012 4.760204 AGGAGTTGACAGGAAAATTAACCG 59.240 41.667 0.00 0.00 0.00 4.44
1858 9013 5.048013 CCAGGAGTTGACAGGAAAATTAACC 60.048 44.000 0.00 0.00 0.00 2.85
1862 9017 4.184649 ACCAGGAGTTGACAGGAAAATT 57.815 40.909 0.00 0.00 0.00 1.82
1870 9025 2.684943 TGGTCTAACCAGGAGTTGACA 58.315 47.619 0.00 0.00 44.79 3.58
1887 9042 9.435570 ACTGATATATGGAGTAGTTAGTTTGGT 57.564 33.333 0.00 0.00 0.00 3.67
1902 9057 9.948964 TGTCAGGATCATTTAACTGATATATGG 57.051 33.333 8.18 0.00 41.46 2.74
1906 9061 8.790718 GCATTGTCAGGATCATTTAACTGATAT 58.209 33.333 8.18 0.00 41.46 1.63
1910 9065 6.198650 TGCATTGTCAGGATCATTTAACTG 57.801 37.500 0.00 0.00 0.00 3.16
1922 11197 1.378882 CCCGTGGATGCATTGTCAGG 61.379 60.000 0.00 6.06 0.00 3.86
1953 11228 2.022129 GACGCGTTCTGTCACCCTG 61.022 63.158 15.53 0.00 36.37 4.45
1955 11230 2.028484 TGACGCGTTCTGTCACCC 59.972 61.111 15.53 0.00 41.20 4.61
1958 11233 0.666274 GGATGTGACGCGTTCTGTCA 60.666 55.000 15.53 2.61 43.68 3.58
1959 11234 1.352156 GGGATGTGACGCGTTCTGTC 61.352 60.000 15.53 10.08 36.88 3.51
2009 11287 2.034221 AGGGAAACGGCTGCTTCC 59.966 61.111 17.93 17.93 39.23 3.46
2010 11288 1.003233 AGAGGGAAACGGCTGCTTC 60.003 57.895 0.00 0.00 0.00 3.86
2011 11289 1.302832 CAGAGGGAAACGGCTGCTT 60.303 57.895 0.00 0.00 0.00 3.91
2012 11290 1.768684 TTCAGAGGGAAACGGCTGCT 61.769 55.000 0.00 0.00 33.66 4.24
2013 11291 0.678048 ATTCAGAGGGAAACGGCTGC 60.678 55.000 0.00 0.00 39.39 5.25
2014 11292 1.089920 CATTCAGAGGGAAACGGCTG 58.910 55.000 0.00 0.00 39.39 4.85
2015 11293 0.984230 TCATTCAGAGGGAAACGGCT 59.016 50.000 0.00 0.00 39.39 5.52
2016 11294 1.821216 TTCATTCAGAGGGAAACGGC 58.179 50.000 0.00 0.00 39.39 5.68
2017 11295 4.034048 CGTAATTCATTCAGAGGGAAACGG 59.966 45.833 0.00 0.00 39.39 4.44
2018 11296 4.494199 GCGTAATTCATTCAGAGGGAAACG 60.494 45.833 0.00 0.00 39.39 3.60
2019 11297 4.394920 TGCGTAATTCATTCAGAGGGAAAC 59.605 41.667 0.00 0.00 39.39 2.78
2020 11298 4.584874 TGCGTAATTCATTCAGAGGGAAA 58.415 39.130 0.00 0.00 39.39 3.13
2021 11299 4.191544 CTGCGTAATTCATTCAGAGGGAA 58.808 43.478 0.00 0.00 40.46 3.97
2022 11300 3.797039 CTGCGTAATTCATTCAGAGGGA 58.203 45.455 0.00 0.00 0.00 4.20
2023 11301 2.289002 GCTGCGTAATTCATTCAGAGGG 59.711 50.000 0.00 0.00 0.00 4.30
2024 11302 3.201290 AGCTGCGTAATTCATTCAGAGG 58.799 45.455 0.00 0.00 0.00 3.69
2025 11303 4.118410 AGAGCTGCGTAATTCATTCAGAG 58.882 43.478 0.00 0.00 0.00 3.35
2026 11304 4.115516 GAGAGCTGCGTAATTCATTCAGA 58.884 43.478 0.00 0.00 0.00 3.27
2027 11305 3.247173 GGAGAGCTGCGTAATTCATTCAG 59.753 47.826 0.00 0.00 0.00 3.02
2028 11306 3.118629 AGGAGAGCTGCGTAATTCATTCA 60.119 43.478 0.00 0.00 0.00 2.57
2029 11307 3.247173 CAGGAGAGCTGCGTAATTCATTC 59.753 47.826 0.00 0.00 0.00 2.67
2030 11308 3.201290 CAGGAGAGCTGCGTAATTCATT 58.799 45.455 0.00 0.00 0.00 2.57
2031 11309 2.831333 CAGGAGAGCTGCGTAATTCAT 58.169 47.619 0.00 0.00 0.00 2.57
2032 11310 1.740380 GCAGGAGAGCTGCGTAATTCA 60.740 52.381 0.00 0.00 38.10 2.57
2033 11311 0.933796 GCAGGAGAGCTGCGTAATTC 59.066 55.000 0.00 0.00 38.10 2.17
2034 11312 3.071580 GCAGGAGAGCTGCGTAATT 57.928 52.632 0.00 0.00 38.10 1.40
2035 11313 4.844420 GCAGGAGAGCTGCGTAAT 57.156 55.556 0.00 0.00 38.10 1.89
2040 11318 0.952984 AAGAAACGCAGGAGAGCTGC 60.953 55.000 0.00 0.00 43.74 5.25
2041 11319 1.462670 GAAAGAAACGCAGGAGAGCTG 59.537 52.381 0.00 0.00 0.00 4.24
2042 11320 1.070758 TGAAAGAAACGCAGGAGAGCT 59.929 47.619 0.00 0.00 0.00 4.09
2043 11321 1.512926 TGAAAGAAACGCAGGAGAGC 58.487 50.000 0.00 0.00 0.00 4.09
2044 11322 4.552166 TTTTGAAAGAAACGCAGGAGAG 57.448 40.909 0.00 0.00 0.00 3.20
2045 11323 4.974368 TTTTTGAAAGAAACGCAGGAGA 57.026 36.364 0.00 0.00 0.00 3.71
2064 11342 7.222611 CACATGAAATTTCTTCCAGTCGTTTTT 59.777 33.333 18.64 0.00 0.00 1.94
2065 11343 6.697019 CACATGAAATTTCTTCCAGTCGTTTT 59.303 34.615 18.64 0.00 0.00 2.43
2066 11344 6.183360 ACACATGAAATTTCTTCCAGTCGTTT 60.183 34.615 18.64 0.00 0.00 3.60
2067 11345 5.299279 ACACATGAAATTTCTTCCAGTCGTT 59.701 36.000 18.64 0.00 0.00 3.85
2073 11351 6.016360 CACTGGTACACATGAAATTTCTTCCA 60.016 38.462 18.64 13.37 0.00 3.53
2077 11355 5.241506 CACCACTGGTACACATGAAATTTCT 59.758 40.000 18.64 1.17 32.11 2.52
2081 11359 4.098914 ACACCACTGGTACACATGAAAT 57.901 40.909 0.00 0.00 32.11 2.17
2094 11372 6.511416 TGGATATTTTCAAACAACACCACTG 58.489 36.000 0.00 0.00 0.00 3.66
2097 11375 8.970859 AAATTGGATATTTTCAAACAACACCA 57.029 26.923 0.00 0.00 0.00 4.17
2214 11494 7.592533 CGATTGACCCATAGCTTATCAAATTTG 59.407 37.037 12.15 12.15 33.29 2.32
2215 11495 7.502226 TCGATTGACCCATAGCTTATCAAATTT 59.498 33.333 0.00 0.00 33.29 1.82
2238 11518 7.972277 AGCAACTAAACTTCGAAGTAATATCGA 59.028 33.333 29.91 10.09 46.64 3.59
2281 11561 5.670792 TCCACTGGTTCGTATATTCAACT 57.329 39.130 0.00 0.00 0.00 3.16
2282 11562 7.656137 ACATATCCACTGGTTCGTATATTCAAC 59.344 37.037 0.00 0.00 0.00 3.18
2284 11564 7.297936 ACATATCCACTGGTTCGTATATTCA 57.702 36.000 0.00 0.00 0.00 2.57
2285 11565 7.870954 TCAACATATCCACTGGTTCGTATATTC 59.129 37.037 0.00 0.00 0.00 1.75
2286 11566 7.732025 TCAACATATCCACTGGTTCGTATATT 58.268 34.615 0.00 0.00 0.00 1.28
2287 11567 7.297936 TCAACATATCCACTGGTTCGTATAT 57.702 36.000 0.00 0.00 0.00 0.86
2353 11634 8.364142 TGCTTAAAATGTTTACAAAGCCTACAT 58.636 29.630 12.12 0.00 0.00 2.29
2355 11636 8.484799 GTTGCTTAAAATGTTTACAAAGCCTAC 58.515 33.333 12.12 8.18 0.00 3.18
2356 11637 8.198109 TGTTGCTTAAAATGTTTACAAAGCCTA 58.802 29.630 12.12 1.83 0.00 3.93
2357 11638 7.044798 TGTTGCTTAAAATGTTTACAAAGCCT 58.955 30.769 12.12 0.00 0.00 4.58
2358 11639 7.240414 TGTTGCTTAAAATGTTTACAAAGCC 57.760 32.000 12.12 2.37 0.00 4.35
2371 11652 8.987890 GGCTTTTGAGATTATTGTTGCTTAAAA 58.012 29.630 0.00 0.00 0.00 1.52
2372 11653 7.602265 GGGCTTTTGAGATTATTGTTGCTTAAA 59.398 33.333 0.00 0.00 0.00 1.52
2373 11654 7.096551 GGGCTTTTGAGATTATTGTTGCTTAA 58.903 34.615 0.00 0.00 0.00 1.85
2374 11655 6.624861 CGGGCTTTTGAGATTATTGTTGCTTA 60.625 38.462 0.00 0.00 0.00 3.09
2378 11659 5.059404 ACGGGCTTTTGAGATTATTGTTG 57.941 39.130 0.00 0.00 0.00 3.33
2379 11660 5.708230 TGTACGGGCTTTTGAGATTATTGTT 59.292 36.000 0.00 0.00 0.00 2.83
2380 11661 5.123344 GTGTACGGGCTTTTGAGATTATTGT 59.877 40.000 0.00 0.00 0.00 2.71
2381 11662 5.123186 TGTGTACGGGCTTTTGAGATTATTG 59.877 40.000 0.00 0.00 0.00 1.90
2396 11677 0.525761 CCCATTTGCTTGTGTACGGG 59.474 55.000 0.00 0.00 0.00 5.28
2398 11679 1.243902 ACCCCATTTGCTTGTGTACG 58.756 50.000 0.00 0.00 0.00 3.67
2399 11680 3.418047 ACTACCCCATTTGCTTGTGTAC 58.582 45.455 0.00 0.00 0.00 2.90
2411 11692 1.525442 GCGCCAGTTACTACCCCAT 59.475 57.895 0.00 0.00 0.00 4.00
2423 11704 2.437716 ATGGTTAACCGGCGCCAG 60.438 61.111 28.98 19.42 39.43 4.85
2426 11707 2.662091 GATGCATGGTTAACCGGCGC 62.662 60.000 26.48 23.44 40.48 6.53
2428 11709 1.034838 TGGATGCATGGTTAACCGGC 61.035 55.000 25.98 25.98 39.43 6.13
2429 11710 1.468985 TTGGATGCATGGTTAACCGG 58.531 50.000 19.65 14.92 39.43 5.28
2430 11711 3.056891 ACTTTTGGATGCATGGTTAACCG 60.057 43.478 19.65 7.62 39.43 4.44
2431 11712 4.220602 AGACTTTTGGATGCATGGTTAACC 59.779 41.667 18.27 18.27 0.00 2.85
2432 11713 5.391312 AGACTTTTGGATGCATGGTTAAC 57.609 39.130 2.46 0.00 0.00 2.01
2434 11715 5.538053 TGAAAGACTTTTGGATGCATGGTTA 59.462 36.000 2.46 0.00 0.00 2.85
2436 11717 3.896888 TGAAAGACTTTTGGATGCATGGT 59.103 39.130 2.46 0.00 0.00 3.55
2437 11718 4.524316 TGAAAGACTTTTGGATGCATGG 57.476 40.909 2.46 0.00 0.00 3.66
2438 11719 6.847956 TTTTGAAAGACTTTTGGATGCATG 57.152 33.333 2.46 0.00 0.00 4.06
2469 11750 4.597507 TGACCTACACTCCTCTTCCAAAAT 59.402 41.667 0.00 0.00 0.00 1.82
2490 11771 4.169059 CCATTATTGGGGATGAGTGTGA 57.831 45.455 0.00 0.00 39.56 3.58
2507 11788 7.933033 AGCATTCTAAACAATTTTGTCACCATT 59.067 29.630 0.00 0.00 41.31 3.16
2510 11791 7.713764 AAGCATTCTAAACAATTTTGTCACC 57.286 32.000 0.00 0.00 41.31 4.02
2528 11809 6.209391 AGGCAACACTACTAATGAAAAGCATT 59.791 34.615 0.00 0.00 44.89 3.56
2551 11884 2.357952 TCCGACATCGATGTTGTAGAGG 59.642 50.000 33.51 25.57 41.95 3.69
2586 11919 2.307098 CACATCCCCTCTTTGGTCTTCT 59.693 50.000 0.00 0.00 0.00 2.85
2623 11957 2.983592 GCTGGGACCCAACAACCG 60.984 66.667 15.87 2.42 30.80 4.44
2636 11970 0.539051 CAGAGGGAGTACTTGGCTGG 59.461 60.000 0.00 0.00 0.00 4.85
2637 11971 1.270907 ACAGAGGGAGTACTTGGCTG 58.729 55.000 0.00 5.71 0.00 4.85
2649 11983 8.888579 AACGTCTTATATTTTGATACAGAGGG 57.111 34.615 0.00 0.00 0.00 4.30
2738 12075 0.413832 AGGACTGGGAGCACCTCTAA 59.586 55.000 0.00 0.00 41.11 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.