Multiple sequence alignment - TraesCS2D01G486200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G486200 chr2D 100.000 8698 0 0 1 8698 586785212 586776515 0.000000e+00 16063.0
1 TraesCS2D01G486200 chr2D 85.131 1224 169 9 1095 2312 618883832 618885048 0.000000e+00 1240.0
2 TraesCS2D01G486200 chr2D 87.652 575 32 25 7975 8521 586577038 586576475 4.430000e-177 632.0
3 TraesCS2D01G486200 chr2D 84.014 588 47 24 8145 8698 586697156 586696582 1.000000e-143 521.0
4 TraesCS2D01G486200 chr2D 85.315 143 17 4 7773 7912 586579515 586579374 2.530000e-30 145.0
5 TraesCS2D01G486200 chr2A 94.772 4438 128 35 2891 7280 721567252 721562871 0.000000e+00 6815.0
6 TraesCS2D01G486200 chr2A 96.451 2761 86 9 54 2809 721570024 721567271 0.000000e+00 4545.0
7 TraesCS2D01G486200 chr2A 90.027 732 48 4 7256 7980 721562861 721562148 0.000000e+00 924.0
8 TraesCS2D01G486200 chr2A 80.293 1228 224 13 1095 2311 721591758 721590538 0.000000e+00 911.0
9 TraesCS2D01G486200 chr2A 88.070 285 31 3 3006 3288 102109004 102109287 1.400000e-87 335.0
10 TraesCS2D01G486200 chr2A 77.689 502 73 19 4602 5076 102109561 102110050 4.000000e-68 270.0
11 TraesCS2D01G486200 chr2A 78.134 343 62 11 7325 7658 721588526 721588188 1.140000e-48 206.0
12 TraesCS2D01G486200 chr2A 92.647 136 7 2 7951 8085 721522700 721522567 8.910000e-45 193.0
13 TraesCS2D01G486200 chr2A 87.429 175 12 5 8332 8504 721573914 721573748 8.910000e-45 193.0
14 TraesCS2D01G486200 chr2A 76.882 186 31 8 3717 3890 778247756 778247941 2.590000e-15 95.3
15 TraesCS2D01G486200 chr2B 91.744 2786 155 42 269 3019 708203322 708200577 0.000000e+00 3801.0
16 TraesCS2D01G486200 chr2B 95.171 1781 65 4 5484 7262 708200505 708198744 0.000000e+00 2793.0
17 TraesCS2D01G486200 chr2B 84.839 1339 191 10 982 2312 756314280 756312946 0.000000e+00 1338.0
18 TraesCS2D01G486200 chr2B 84.753 1338 194 8 982 2312 756329115 756327781 0.000000e+00 1332.0
19 TraesCS2D01G486200 chr2B 84.489 1341 192 12 982 2312 756343417 756342083 0.000000e+00 1310.0
20 TraesCS2D01G486200 chr2B 90.201 745 56 6 7344 8076 708191419 708190680 0.000000e+00 955.0
21 TraesCS2D01G486200 chr2B 80.540 1223 227 11 1095 2313 708211300 708210085 0.000000e+00 929.0
22 TraesCS2D01G486200 chr2B 82.836 938 96 30 3342 4254 278860204 278861101 0.000000e+00 780.0
23 TraesCS2D01G486200 chr2B 81.953 942 94 32 3339 4254 133683256 133684147 0.000000e+00 728.0
24 TraesCS2D01G486200 chr2B 91.532 496 33 5 7325 7812 708198633 708198139 0.000000e+00 675.0
25 TraesCS2D01G486200 chr2B 82.466 730 86 20 4294 5001 133684151 133684860 1.250000e-167 601.0
26 TraesCS2D01G486200 chr2B 83.148 540 45 20 8062 8573 708196532 708196011 1.330000e-122 451.0
27 TraesCS2D01G486200 chr2B 91.266 229 20 0 5201 5429 133685392 133685620 6.560000e-81 313.0
28 TraesCS2D01G486200 chr2B 91.266 229 20 0 5201 5429 278862294 278862522 6.560000e-81 313.0
29 TraesCS2D01G486200 chr2B 84.713 314 35 9 7638 7939 708187873 708188185 1.420000e-77 302.0
30 TraesCS2D01G486200 chr2B 84.713 314 35 9 7638 7939 708190164 708190476 1.420000e-77 302.0
31 TraesCS2D01G486200 chr2B 85.563 284 30 4 3007 3280 278859813 278860095 3.970000e-73 287.0
32 TraesCS2D01G486200 chr2B 84.892 278 32 6 3013 3280 133682874 133683151 1.110000e-68 272.0
33 TraesCS2D01G486200 chr2B 83.013 312 28 13 8332 8634 708189913 708189618 8.660000e-65 259.0
34 TraesCS2D01G486200 chr2B 91.061 179 9 3 8332 8510 708187622 708187451 1.460000e-57 235.0
35 TraesCS2D01G486200 chr2B 82.955 264 39 5 7401 7658 708207840 708207577 5.250000e-57 233.0
36 TraesCS2D01G486200 chr2B 72.387 909 188 45 6360 7260 756176056 756176909 6.790000e-56 230.0
37 TraesCS2D01G486200 chr2B 90.116 172 16 1 7511 7681 708188505 708188334 1.140000e-53 222.0
38 TraesCS2D01G486200 chr2B 93.333 120 4 3 124 242 708203436 708203320 3.230000e-39 174.0
39 TraesCS2D01G486200 chr2B 92.857 84 6 0 1 84 708203520 708203437 1.190000e-23 122.0
40 TraesCS2D01G486200 chr2B 97.059 34 1 0 5353 5386 133685617 133685650 3.390000e-04 58.4
41 TraesCS2D01G486200 chr7B 83.351 937 96 28 3342 4253 20399032 20399933 0.000000e+00 811.0
42 TraesCS2D01G486200 chr7B 82.040 696 92 19 4294 4968 20399938 20400621 5.900000e-156 562.0
43 TraesCS2D01G486200 chr7B 91.703 229 19 0 5201 5429 20400878 20401106 1.410000e-82 318.0
44 TraesCS2D01G486200 chr7B 74.169 391 70 20 4484 4853 530458085 530458465 5.480000e-27 134.0
45 TraesCS2D01G486200 chr7B 75.812 277 39 20 4256 4519 663741246 663740985 1.980000e-21 115.0
46 TraesCS2D01G486200 chr7B 100.000 34 0 0 5353 5386 20401103 20401136 7.290000e-06 63.9
47 TraesCS2D01G486200 chr6B 82.322 939 94 32 3342 4254 516481761 516480869 0.000000e+00 749.0
48 TraesCS2D01G486200 chr6B 82.466 730 86 20 4294 5001 516480865 516480156 1.250000e-167 601.0
49 TraesCS2D01G486200 chr6B 78.774 669 87 26 4601 5227 89526107 89526762 1.760000e-106 398.0
50 TraesCS2D01G486200 chr6B 91.266 229 20 0 5201 5429 516480065 516479837 6.560000e-81 313.0
51 TraesCS2D01G486200 chr6B 85.507 276 30 6 3015 3280 516482147 516481872 6.650000e-71 279.0
52 TraesCS2D01G486200 chr6B 100.000 34 0 0 5353 5386 516479840 516479807 7.290000e-06 63.9
53 TraesCS2D01G486200 chr4A 78.017 928 120 48 4348 5235 710644158 710643275 2.800000e-139 507.0
54 TraesCS2D01G486200 chr5B 78.892 668 86 26 4602 5227 465817886 465817232 1.360000e-107 401.0
55 TraesCS2D01G486200 chr5B 87.654 162 19 1 3482 3642 603758947 603759108 4.150000e-43 187.0
56 TraesCS2D01G486200 chr6D 82.651 415 58 10 4348 4749 360518745 360519158 1.070000e-93 355.0
57 TraesCS2D01G486200 chr6D 79.458 443 63 12 4815 5235 360519195 360519631 1.100000e-73 289.0
58 TraesCS2D01G486200 chr5A 77.760 634 84 25 4602 5192 613094424 613093805 3.890000e-88 337.0
59 TraesCS2D01G486200 chr5A 87.108 287 34 3 3013 3297 613094974 613094689 1.090000e-83 322.0
60 TraesCS2D01G486200 chr5A 86.063 287 37 3 3013 3297 658547911 658547626 1.100000e-78 305.0
61 TraesCS2D01G486200 chr5A 78.373 504 69 20 4602 5078 658547362 658546872 3.070000e-74 291.0
62 TraesCS2D01G486200 chr5A 76.190 189 31 9 3717 3891 660208099 660207911 4.330000e-13 87.9
63 TraesCS2D01G486200 chr5A 100.000 31 0 0 3013 3043 606906073 606906103 3.390000e-04 58.4
64 TraesCS2D01G486200 chr7D 74.113 958 175 42 4434 5349 29966423 29965497 2.340000e-85 327.0
65 TraesCS2D01G486200 chrUn 84.713 314 35 9 7638 7939 333087541 333087229 1.420000e-77 302.0
66 TraesCS2D01G486200 chrUn 85.821 268 26 8 7683 7939 333086689 333086955 3.090000e-69 274.0
67 TraesCS2D01G486200 chrUn 83.013 312 28 13 8332 8634 333087792 333088087 8.660000e-65 259.0
68 TraesCS2D01G486200 chrUn 90.116 172 16 1 7511 7681 333089200 333089371 1.140000e-53 222.0
69 TraesCS2D01G486200 chr6A 83.688 282 40 5 3034 3312 579975210 579975488 2.410000e-65 261.0
70 TraesCS2D01G486200 chr3A 84.959 246 34 2 3533 3778 310696233 310695991 6.740000e-61 246.0
71 TraesCS2D01G486200 chr3B 73.770 610 111 32 4281 4853 157725606 157726203 2.480000e-45 195.0
72 TraesCS2D01G486200 chr3B 97.143 35 0 1 3015 3049 214555007 214554974 3.390000e-04 58.4
73 TraesCS2D01G486200 chr1A 76.895 277 35 21 4256 4519 15806371 15806111 7.090000e-26 130.0
74 TraesCS2D01G486200 chr3D 73.750 240 47 14 4696 4929 94436534 94436763 7.240000e-11 80.5
75 TraesCS2D01G486200 chr5D 97.143 35 1 0 3015 3049 191930758 191930724 9.430000e-05 60.2
76 TraesCS2D01G486200 chr4B 100.000 28 0 0 3015 3042 149037224 149037251 1.600000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G486200 chr2D 586776515 586785212 8697 True 16063.000000 16063 100.000000 1 8698 1 chr2D.!!$R2 8697
1 TraesCS2D01G486200 chr2D 618883832 618885048 1216 False 1240.000000 1240 85.131000 1095 2312 1 chr2D.!!$F1 1217
2 TraesCS2D01G486200 chr2D 586696582 586697156 574 True 521.000000 521 84.014000 8145 8698 1 chr2D.!!$R1 553
3 TraesCS2D01G486200 chr2D 586576475 586579515 3040 True 388.500000 632 86.483500 7773 8521 2 chr2D.!!$R3 748
4 TraesCS2D01G486200 chr2A 721562148 721573914 11766 True 3119.250000 6815 92.169750 54 8504 4 chr2A.!!$R2 8450
5 TraesCS2D01G486200 chr2A 721588188 721591758 3570 True 558.500000 911 79.213500 1095 7658 2 chr2A.!!$R3 6563
6 TraesCS2D01G486200 chr2A 102109004 102110050 1046 False 302.500000 335 82.879500 3006 5076 2 chr2A.!!$F2 2070
7 TraesCS2D01G486200 chr2B 756312946 756314280 1334 True 1338.000000 1338 84.839000 982 2312 1 chr2B.!!$R1 1330
8 TraesCS2D01G486200 chr2B 708196011 708203520 7509 True 1336.000000 3801 91.297500 1 8573 6 chr2B.!!$R5 8572
9 TraesCS2D01G486200 chr2B 756327781 756329115 1334 True 1332.000000 1332 84.753000 982 2312 1 chr2B.!!$R2 1330
10 TraesCS2D01G486200 chr2B 756342083 756343417 1334 True 1310.000000 1310 84.489000 982 2312 1 chr2B.!!$R3 1330
11 TraesCS2D01G486200 chr2B 708207577 708211300 3723 True 581.000000 929 81.747500 1095 7658 2 chr2B.!!$R6 6563
12 TraesCS2D01G486200 chr2B 278859813 278862522 2709 False 460.000000 780 86.555000 3007 5429 3 chr2B.!!$F3 2422
13 TraesCS2D01G486200 chr2B 708187451 708191419 3968 True 417.750000 955 88.597750 7344 8634 4 chr2B.!!$R4 1290
14 TraesCS2D01G486200 chr2B 133682874 133685650 2776 False 394.480000 728 87.527200 3013 5429 5 chr2B.!!$F2 2416
15 TraesCS2D01G486200 chr2B 708187873 708190476 2603 False 302.000000 302 84.713000 7638 7939 2 chr2B.!!$F4 301
16 TraesCS2D01G486200 chr2B 756176056 756176909 853 False 230.000000 230 72.387000 6360 7260 1 chr2B.!!$F1 900
17 TraesCS2D01G486200 chr7B 20399032 20401136 2104 False 438.725000 811 89.273500 3342 5429 4 chr7B.!!$F2 2087
18 TraesCS2D01G486200 chr6B 516479807 516482147 2340 True 401.180000 749 88.312200 3015 5429 5 chr6B.!!$R1 2414
19 TraesCS2D01G486200 chr6B 89526107 89526762 655 False 398.000000 398 78.774000 4601 5227 1 chr6B.!!$F1 626
20 TraesCS2D01G486200 chr4A 710643275 710644158 883 True 507.000000 507 78.017000 4348 5235 1 chr4A.!!$R1 887
21 TraesCS2D01G486200 chr5B 465817232 465817886 654 True 401.000000 401 78.892000 4602 5227 1 chr5B.!!$R1 625
22 TraesCS2D01G486200 chr6D 360518745 360519631 886 False 322.000000 355 81.054500 4348 5235 2 chr6D.!!$F1 887
23 TraesCS2D01G486200 chr5A 613093805 613094974 1169 True 329.500000 337 82.434000 3013 5192 2 chr5A.!!$R2 2179
24 TraesCS2D01G486200 chr5A 658546872 658547911 1039 True 298.000000 305 82.218000 3013 5078 2 chr5A.!!$R3 2065
25 TraesCS2D01G486200 chr7D 29965497 29966423 926 True 327.000000 327 74.113000 4434 5349 1 chr7D.!!$R1 915
26 TraesCS2D01G486200 chrUn 333086689 333089371 2682 False 251.666667 274 86.316667 7511 8634 3 chrUn.!!$F1 1123

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 3947 0.817654 GCCCAGCCAGTTTTATCCAC 59.182 55.0 0.00 0.00 0.00 4.02 F
976 4819 2.093447 AGTAGTCTTTTGCCCCAGATCG 60.093 50.0 0.00 0.00 0.00 3.69 F
1306 5150 1.630244 GCTGGTGATCAGTGACACGC 61.630 60.0 15.20 10.42 45.08 5.34 F
2838 6708 0.109458 CTAGTGGCGTGCGAGTTGTA 60.109 55.0 0.00 0.00 0.00 2.41 F
2842 6712 0.314618 TGGCGTGCGAGTTGTAGTAA 59.685 50.0 0.00 0.00 0.00 2.24 F
3459 7412 0.327095 TCTACCCCTTGCCATGGCTA 60.327 55.0 35.53 27.89 42.51 3.93 F
3477 7448 1.877576 TACAGCTGCTCCTGGACACG 61.878 60.0 15.27 0.00 37.16 4.49 F
4028 8005 2.098117 CCTGGTCTCAATCGATTTTGCC 59.902 50.0 8.21 9.07 0.00 4.52 F
5597 10199 0.338814 AATGGTACTCCCTCCGTCCT 59.661 55.0 0.00 0.00 0.00 3.85 F
7070 11705 0.389025 TCTGTTCTTGTCTCGCAGCA 59.611 50.0 0.00 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1060 4904 1.032014 GCAGAGGCTGTGGAAACAAA 58.968 50.000 14.04 0.00 38.76 2.83 R
2214 6068 0.107361 TCCAGATGATGCAGCCTGTG 60.107 55.000 0.00 0.00 0.00 3.66 R
2903 6786 1.431243 AGGGACTAGCCTCCTATGGAG 59.569 57.143 6.64 6.64 43.71 3.86 R
3865 7841 1.289160 TCTGGACCAAATCTCCCCTG 58.711 55.000 0.00 0.00 0.00 4.45 R
4028 8005 2.291741 GGCAGAACAGGACACAGAAAAG 59.708 50.000 0.00 0.00 0.00 2.27 R
5444 10046 0.037734 TCACCAGTCCTGCTCGTAGA 59.962 55.000 0.00 0.00 0.00 2.59 R
5593 10195 4.667519 ACCTCGAAATGTATACCAGGAC 57.332 45.455 0.00 0.00 0.00 3.85 R
6080 10686 1.331214 ACAACCCTTGGAGCATTGTG 58.669 50.000 0.00 0.00 32.42 3.33 R
7577 12489 0.958382 TGCCGGTGTTGGTTAGCATC 60.958 55.000 1.90 0.00 0.00 3.91 R
8107 19078 1.254026 AGCTGCAGTGCATCATGTTT 58.746 45.000 20.10 0.00 38.13 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 3918 3.574445 GATGCCAGCGCTGCTCAG 61.574 66.667 31.96 18.86 36.40 3.35
84 3922 4.079850 CCAGCGCTGCTCAGAGGT 62.080 66.667 31.96 0.00 36.40 3.85
109 3947 0.817654 GCCCAGCCAGTTTTATCCAC 59.182 55.000 0.00 0.00 0.00 4.02
117 3955 2.747446 CCAGTTTTATCCACGGAGTTGG 59.253 50.000 0.00 0.00 41.61 3.77
170 4008 5.104900 GGCTAGATCTGGAAGTTCTTACCAA 60.105 44.000 10.75 0.00 39.94 3.67
171 4009 6.408662 GGCTAGATCTGGAAGTTCTTACCAAT 60.409 42.308 10.75 0.00 39.94 3.16
172 4010 6.481644 GCTAGATCTGGAAGTTCTTACCAATG 59.518 42.308 10.75 0.00 39.94 2.82
173 4011 6.627087 AGATCTGGAAGTTCTTACCAATGA 57.373 37.500 2.25 0.00 39.94 2.57
174 4012 7.020827 AGATCTGGAAGTTCTTACCAATGAA 57.979 36.000 2.25 0.00 39.94 2.57
369 4208 6.708949 TGTACCGATATTTTTATCTGAAGGGC 59.291 38.462 0.00 0.00 0.00 5.19
404 4243 2.543653 GCAAACGGAATCAGTTGTTGCT 60.544 45.455 13.13 0.00 34.39 3.91
411 4251 3.243068 GGAATCAGTTGTTGCTGTCGTTT 60.243 43.478 0.00 0.00 37.70 3.60
413 4253 2.351455 TCAGTTGTTGCTGTCGTTTGA 58.649 42.857 0.00 0.00 37.70 2.69
443 4283 5.126869 TGTTGATCAAACAGAACACCATGTT 59.873 36.000 10.35 0.00 43.96 2.71
478 4318 2.954868 CGGTACCTCGCATCGTGC 60.955 66.667 10.90 0.58 40.69 5.34
738 4581 3.786516 TCAATGTAGACGCGGTTGATA 57.213 42.857 12.47 0.00 0.00 2.15
976 4819 2.093447 AGTAGTCTTTTGCCCCAGATCG 60.093 50.000 0.00 0.00 0.00 3.69
1060 4904 3.491104 GCTTATCGTCGTTCCATTCCTCT 60.491 47.826 0.00 0.00 0.00 3.69
1091 4935 2.496341 CTCTGCCGCGAATCCTGA 59.504 61.111 8.23 1.67 0.00 3.86
1104 4948 4.701765 CGAATCCTGAATCTGACATCCTT 58.298 43.478 0.00 0.00 0.00 3.36
1306 5150 1.630244 GCTGGTGATCAGTGACACGC 61.630 60.000 15.20 10.42 45.08 5.34
2214 6068 1.676967 CAAAGGAGGAGGCACTGGC 60.677 63.158 0.00 0.00 41.55 4.85
2418 6274 0.314935 AACCAACCGCTGCAATTCAG 59.685 50.000 0.00 1.80 45.62 3.02
2494 6354 6.096423 ACCTTTCAGTTCAGGGTTTAGAAAAC 59.904 38.462 0.00 0.00 34.02 2.43
2523 6383 9.579932 ACTCTCTTTCAAATAAGATTTCTGGTT 57.420 29.630 0.00 0.00 33.89 3.67
2606 6476 3.387962 TCTCCACCCATCTAGCTTTGAT 58.612 45.455 0.00 0.00 0.00 2.57
2670 6540 4.017380 ACTCGTAGCTAGATTGTCAACG 57.983 45.455 0.00 0.00 0.00 4.10
2718 6588 2.173519 ACTGTAGCAACTAAGGCGGTA 58.826 47.619 0.00 0.00 36.08 4.02
2734 6604 6.679327 AGGCGGTAAATTCTAAAGATGTTC 57.321 37.500 0.00 0.00 0.00 3.18
2812 6682 1.804748 CTAAAGAACTGGGCGTTGACC 59.195 52.381 0.00 0.00 35.56 4.02
2832 6702 3.997397 TTGGCTAGTGGCGTGCGA 61.997 61.111 0.00 0.00 42.94 5.10
2833 6703 3.932580 TTGGCTAGTGGCGTGCGAG 62.933 63.158 0.00 0.00 42.94 5.03
2835 6705 2.432628 GCTAGTGGCGTGCGAGTT 60.433 61.111 0.00 0.00 0.00 3.01
2837 6707 1.372997 CTAGTGGCGTGCGAGTTGT 60.373 57.895 0.00 0.00 0.00 3.32
2838 6708 0.109458 CTAGTGGCGTGCGAGTTGTA 60.109 55.000 0.00 0.00 0.00 2.41
2840 6710 1.663702 GTGGCGTGCGAGTTGTAGT 60.664 57.895 0.00 0.00 0.00 2.73
2841 6711 0.387622 GTGGCGTGCGAGTTGTAGTA 60.388 55.000 0.00 0.00 0.00 1.82
2842 6712 0.314618 TGGCGTGCGAGTTGTAGTAA 59.685 50.000 0.00 0.00 0.00 2.24
2843 6713 1.067425 TGGCGTGCGAGTTGTAGTAAT 60.067 47.619 0.00 0.00 0.00 1.89
2845 6715 2.256174 GCGTGCGAGTTGTAGTAATCA 58.744 47.619 0.00 0.00 0.00 2.57
2846 6716 2.858344 GCGTGCGAGTTGTAGTAATCAT 59.142 45.455 0.00 0.00 0.00 2.45
2849 6719 4.675565 CGTGCGAGTTGTAGTAATCATAGG 59.324 45.833 0.00 0.00 0.00 2.57
2850 6720 4.982916 GTGCGAGTTGTAGTAATCATAGGG 59.017 45.833 0.00 0.00 0.00 3.53
2851 6721 4.038763 TGCGAGTTGTAGTAATCATAGGGG 59.961 45.833 0.00 0.00 0.00 4.79
2852 6722 4.557205 CGAGTTGTAGTAATCATAGGGGC 58.443 47.826 0.00 0.00 0.00 5.80
2853 6723 4.281182 CGAGTTGTAGTAATCATAGGGGCT 59.719 45.833 0.00 0.00 0.00 5.19
2854 6724 5.475909 CGAGTTGTAGTAATCATAGGGGCTA 59.524 44.000 0.00 0.00 0.00 3.93
2855 6725 6.349445 CGAGTTGTAGTAATCATAGGGGCTAG 60.349 46.154 0.00 0.00 0.00 3.42
2856 6726 6.382925 AGTTGTAGTAATCATAGGGGCTAGT 58.617 40.000 0.00 0.00 0.00 2.57
2885 6768 1.369692 CAGGGCGTGTGACTGGTTA 59.630 57.895 0.00 0.00 0.00 2.85
2889 6772 2.303600 AGGGCGTGTGACTGGTTATTTA 59.696 45.455 0.00 0.00 0.00 1.40
2924 6807 1.148027 TCCATAGGAGGCTAGTCCCTG 59.852 57.143 12.98 4.32 37.31 4.45
2930 6813 1.145325 GGAGGCTAGTCCCTGCTAGTA 59.855 57.143 0.00 0.00 39.93 1.82
3216 7118 6.985188 ATCTCGCAAATTACAGAAAGCTTA 57.015 33.333 0.00 0.00 0.00 3.09
3292 7195 7.918562 ACAAAGTTGCAACAATAATTAGACGTT 59.081 29.630 30.11 8.99 0.00 3.99
3336 7242 3.518634 TTGTGGACCAAAACTCTTTGC 57.481 42.857 0.00 0.00 40.61 3.68
3417 7370 4.456280 ACGTCAAGCATACATCTTCAGA 57.544 40.909 0.00 0.00 0.00 3.27
3425 7378 2.024176 TACATCTTCAGAAAGCCGCC 57.976 50.000 0.00 0.00 32.18 6.13
3458 7411 0.995675 ATCTACCCCTTGCCATGGCT 60.996 55.000 35.53 18.13 42.51 4.75
3459 7412 0.327095 TCTACCCCTTGCCATGGCTA 60.327 55.000 35.53 27.89 42.51 3.93
3477 7448 1.877576 TACAGCTGCTCCTGGACACG 61.878 60.000 15.27 0.00 37.16 4.49
3865 7841 8.812329 TCAATTTAATACGCATAATTTGTTGCC 58.188 29.630 0.00 0.00 35.41 4.52
3897 7874 6.485830 TTTGGTCCAGATCTTAGGATACAG 57.514 41.667 5.16 0.00 36.11 2.74
4028 8005 2.098117 CCTGGTCTCAATCGATTTTGCC 59.902 50.000 8.21 9.07 0.00 4.52
4313 8291 2.959516 TGTTACTGTGAAGGAGATGCG 58.040 47.619 0.00 0.00 0.00 4.73
4612 8729 9.226345 GCAGATAGCAATTCAAGTATAAAACAC 57.774 33.333 0.00 0.00 44.79 3.32
4843 8996 4.463539 TGCAAATAATGGCCTGCTATATGG 59.536 41.667 12.97 0.00 35.78 2.74
5430 10032 6.434340 ACTCATCCATATATAGCTTGTCACGA 59.566 38.462 0.00 0.00 0.00 4.35
5444 10046 4.336889 TGTCACGACATCTTCCTTCTTT 57.663 40.909 0.00 0.00 36.21 2.52
5593 10195 3.402628 CCATAAATGGTACTCCCTCCG 57.597 52.381 0.49 0.00 43.05 4.63
5594 10196 2.704065 CCATAAATGGTACTCCCTCCGT 59.296 50.000 0.49 0.00 43.05 4.69
5597 10199 0.338814 AATGGTACTCCCTCCGTCCT 59.661 55.000 0.00 0.00 0.00 3.85
5602 10204 1.133544 GTACTCCCTCCGTCCTGGTAT 60.134 57.143 0.00 0.00 39.52 2.73
5780 10382 4.680702 ACATGCGCAATATAATGCAACAA 58.319 34.783 17.11 0.00 46.76 2.83
5791 10393 1.427435 ATGCAACAAATTTTCGCCGG 58.573 45.000 0.00 0.00 0.00 6.13
6647 11276 5.911378 TTTGGTAATCACTGCATTGCATA 57.089 34.783 12.53 1.33 38.13 3.14
6684 11313 2.222931 TGCATTACATGTAGAAACGCGC 60.223 45.455 5.73 0.00 0.00 6.86
7058 11693 6.261826 GCAACAGCTATGGATATTTCTGTTCT 59.738 38.462 0.00 0.00 41.21 3.01
7062 11697 7.497249 ACAGCTATGGATATTTCTGTTCTTGTC 59.503 37.037 0.00 0.00 31.51 3.18
7070 11705 0.389025 TCTGTTCTTGTCTCGCAGCA 59.611 50.000 0.00 0.00 0.00 4.41
7276 11948 8.285394 TCAAGTAAGTACTAAGTACACGTCTTG 58.715 37.037 0.00 4.95 41.03 3.02
7333 12027 0.988832 AACTCAGCGGATACCCCAAA 59.011 50.000 0.00 0.00 34.14 3.28
7356 12050 1.194547 CACGTTCCACACATTCCGAAG 59.805 52.381 0.00 0.00 0.00 3.79
7363 12057 0.744414 ACACATTCCGAAGATGGCCG 60.744 55.000 0.00 0.00 0.00 6.13
7525 12431 2.309613 GTGCATCCATATTGGCCTTCA 58.690 47.619 3.32 0.00 37.47 3.02
7601 12513 1.096386 TAACCAACACCGGCACACAC 61.096 55.000 0.00 0.00 0.00 3.82
7640 12552 4.778143 ACGGCCAACATCGGAGCC 62.778 66.667 2.24 0.00 42.18 4.70
7669 12581 1.264020 CGCACAACCAATATCGGATGG 59.736 52.381 0.00 0.00 42.60 3.51
7737 12656 4.568359 CAGTTTGTGATATCTTGGGACGAG 59.432 45.833 3.98 0.00 0.00 4.18
7803 12729 2.911102 GCTTCATTGCGTTTCAGCTTAC 59.089 45.455 0.00 0.00 38.13 2.34
7867 12800 3.077359 AGACAGTTGCAGCATTCTAACC 58.923 45.455 2.55 0.00 0.00 2.85
7913 15007 5.289595 GCCTTCGTTTTCATTTTCCTTTCT 58.710 37.500 0.00 0.00 0.00 2.52
7957 15051 4.818546 ACATGATGGATGGAACTTTCGATC 59.181 41.667 0.00 5.62 40.40 3.69
8059 17001 0.890683 CACAGGCTAAGCTTTTGGGG 59.109 55.000 3.20 0.00 0.00 4.96
8104 19075 4.778579 CAAGTGGAACATGGATCAGAGAT 58.221 43.478 0.00 0.00 44.52 2.75
8105 19076 4.686191 AGTGGAACATGGATCAGAGATC 57.314 45.455 0.00 0.00 44.52 2.75
8107 19078 4.472470 AGTGGAACATGGATCAGAGATCAA 59.528 41.667 9.02 0.00 44.52 2.57
8138 19116 3.427863 GCACTGCAGCTTCATTTCTTTTC 59.572 43.478 15.27 0.00 0.00 2.29
8176 19164 3.703001 TCCCATGACTGGAAGAAGAAC 57.297 47.619 0.00 0.00 46.37 3.01
8180 19169 3.693085 CCATGACTGGAAGAAGAACATGG 59.307 47.826 0.00 0.00 46.37 3.66
8240 19234 0.465460 ATGTCGGTGTGTTTGGCTGT 60.465 50.000 0.00 0.00 0.00 4.40
8329 19329 9.676195 CATTTTTCTTCTTCTTCTTCTTCTTCC 57.324 33.333 0.00 0.00 0.00 3.46
8337 19361 9.799106 TTCTTCTTCTTCTTCTTCCACAAATAT 57.201 29.630 0.00 0.00 0.00 1.28
8381 19406 1.599518 CCTGCCGTGTGGTGCTAAA 60.600 57.895 0.00 0.00 37.67 1.85
8511 19538 3.060866 CCGTAGGCCCATAGCTCC 58.939 66.667 0.00 0.00 46.14 4.70
8521 19548 2.164624 GCCCATAGCTCCGTATACTCTG 59.835 54.545 0.56 0.00 38.99 3.35
8522 19549 2.164624 CCCATAGCTCCGTATACTCTGC 59.835 54.545 0.56 2.40 0.00 4.26
8523 19550 2.820197 CCATAGCTCCGTATACTCTGCA 59.180 50.000 0.56 0.00 0.00 4.41
8590 19625 1.014044 TCTGCTTCGTTCATGCCGTC 61.014 55.000 4.83 0.00 0.00 4.79
8594 19629 0.439985 CTTCGTTCATGCCGTCTGTG 59.560 55.000 4.83 0.00 0.00 3.66
8595 19630 1.565156 TTCGTTCATGCCGTCTGTGC 61.565 55.000 4.83 0.00 0.00 4.57
8596 19631 2.870372 GTTCATGCCGTCTGTGCC 59.130 61.111 0.00 0.00 0.00 5.01
8601 19642 3.939837 ATGCCGTCTGTGCCTGTCG 62.940 63.158 0.00 0.00 0.00 4.35
8627 19668 3.978687 ACCGCAATACTAGATGCTACAC 58.021 45.455 14.61 0.00 40.39 2.90
8637 19708 4.988065 TGCTACACGCAGGAGAAC 57.012 55.556 0.00 0.00 45.47 3.01
8638 19709 2.351777 TGCTACACGCAGGAGAACT 58.648 52.632 0.00 0.00 45.47 3.01
8639 19710 0.243907 TGCTACACGCAGGAGAACTC 59.756 55.000 0.00 0.00 45.47 3.01
8640 19711 0.243907 GCTACACGCAGGAGAACTCA 59.756 55.000 4.23 0.00 38.92 3.41
8689 19760 6.777580 AGGCAGGAAATTTCTCTCAAGTAAAA 59.222 34.615 17.42 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 7.027874 ACCCTCAAATAGATGGTGTTCTTTA 57.972 36.000 0.00 0.00 42.80 1.85
80 3918 1.809567 CTGGCTGGGCAACAAACCTC 61.810 60.000 0.00 0.00 39.74 3.85
84 3922 0.908198 AAAACTGGCTGGGCAACAAA 59.092 45.000 0.00 0.00 39.74 2.83
109 3947 3.404899 TGGTTTAGTTTAGCCAACTCCG 58.595 45.455 2.18 0.00 42.62 4.63
170 4008 7.253422 CAATTTCGAATTCTTAGCCAGTTCAT 58.747 34.615 0.00 0.00 0.00 2.57
171 4009 6.611381 CAATTTCGAATTCTTAGCCAGTTCA 58.389 36.000 0.00 0.00 0.00 3.18
172 4010 5.513141 GCAATTTCGAATTCTTAGCCAGTTC 59.487 40.000 0.00 0.00 0.00 3.01
173 4011 5.402398 GCAATTTCGAATTCTTAGCCAGTT 58.598 37.500 0.00 0.00 0.00 3.16
174 4012 4.437390 CGCAATTTCGAATTCTTAGCCAGT 60.437 41.667 0.00 0.00 0.00 4.00
177 4015 4.029043 GTCGCAATTTCGAATTCTTAGCC 58.971 43.478 0.72 0.00 40.43 3.93
242 4081 0.613260 TGCATTTCTCTAGTGGCCGT 59.387 50.000 0.00 0.00 0.00 5.68
249 4088 3.756069 GCTGTTTGCTGCATTTCTCTAG 58.244 45.455 1.84 0.00 39.07 2.43
369 4208 2.667481 CCGTTTGCTGCATTTTGTATGG 59.333 45.455 1.84 0.00 0.00 2.74
404 4243 5.237048 TGATCAACAGATCATCAAACGACA 58.763 37.500 4.17 0.00 42.31 4.35
443 4283 1.746615 GCTCGCTTCATGCCAGGAA 60.747 57.895 0.00 0.00 38.78 3.36
478 4318 0.944311 CGAGGTGTCAAGGTGAACGG 60.944 60.000 0.00 0.00 0.00 4.44
579 4419 1.363807 AAAAAGCCAACTCCAGCGC 59.636 52.632 0.00 0.00 0.00 5.92
738 4581 7.278424 CACGGCAATTTTTAATCCTTGATTGAT 59.722 33.333 0.00 0.00 33.95 2.57
976 4819 1.949257 CTGGTGTTTCTTGTCCCGC 59.051 57.895 0.00 0.00 0.00 6.13
1060 4904 1.032014 GCAGAGGCTGTGGAAACAAA 58.968 50.000 14.04 0.00 38.76 2.83
1104 4948 1.971167 GATGTTGCGGCCCTTGTCA 60.971 57.895 0.00 0.00 0.00 3.58
1306 5150 4.210955 GCTATCAATCAAGAGAAGGCTTCG 59.789 45.833 20.78 7.51 34.02 3.79
1803 5654 2.132762 CATACCAGGCGTCGGAATAAC 58.867 52.381 4.93 0.00 0.00 1.89
2214 6068 0.107361 TCCAGATGATGCAGCCTGTG 60.107 55.000 0.00 0.00 0.00 3.66
2418 6274 2.232208 CAGAATCACCCCCTTTTTGAGC 59.768 50.000 0.00 0.00 0.00 4.26
2494 6354 8.457261 CAGAAATCTTATTTGAAAGAGAGTGGG 58.543 37.037 1.34 0.00 38.81 4.61
2523 6383 1.831736 GAGCACCCCTAAGTTAGCAGA 59.168 52.381 4.22 0.00 0.00 4.26
2693 6563 2.540101 GCCTTAGTTGCTACAGTATGCG 59.460 50.000 0.13 0.00 42.53 4.73
2734 6604 9.019764 GTTCAAAATTACCACCGATAAATGATG 57.980 33.333 0.00 0.00 0.00 3.07
2740 6610 6.016192 TGCAAGTTCAAAATTACCACCGATAA 60.016 34.615 0.00 0.00 0.00 1.75
2741 6611 5.473846 TGCAAGTTCAAAATTACCACCGATA 59.526 36.000 0.00 0.00 0.00 2.92
2812 6682 2.680913 GCACGCCACTAGCCAACTG 61.681 63.158 0.00 0.00 38.78 3.16
2832 6702 6.382925 ACTAGCCCCTATGATTACTACAACT 58.617 40.000 0.00 0.00 0.00 3.16
2833 6703 6.295180 GGACTAGCCCCTATGATTACTACAAC 60.295 46.154 0.00 0.00 0.00 3.32
2835 6705 5.331069 GGACTAGCCCCTATGATTACTACA 58.669 45.833 0.00 0.00 0.00 2.74
2850 6720 4.228567 GCGAGCCTGGGACTAGCC 62.229 72.222 0.00 0.00 30.48 3.93
2851 6721 3.438017 CTGCGAGCCTGGGACTAGC 62.438 68.421 0.00 0.00 36.44 3.42
2852 6722 2.790791 CCTGCGAGCCTGGGACTAG 61.791 68.421 0.00 0.00 0.00 2.57
2853 6723 2.759973 CCTGCGAGCCTGGGACTA 60.760 66.667 0.00 0.00 0.00 2.59
2872 6755 7.359262 TGAGAAATAAATAACCAGTCACACG 57.641 36.000 0.00 0.00 0.00 4.49
2903 6786 1.431243 AGGGACTAGCCTCCTATGGAG 59.569 57.143 6.64 6.64 43.71 3.86
2912 6795 2.719705 AGATACTAGCAGGGACTAGCCT 59.280 50.000 0.00 0.00 42.91 4.58
2959 6844 2.490509 TCCTCTACGAAATGAAGCGTCA 59.509 45.455 4.40 4.40 41.49 4.35
2960 6845 3.146618 TCCTCTACGAAATGAAGCGTC 57.853 47.619 0.00 0.00 41.49 5.19
3114 7000 3.119849 CCCACTTCAGCGGTAAAATTCAG 60.120 47.826 0.00 0.00 0.00 3.02
3302 7205 6.723298 TGGTCCACAAATTTCATTACTGTT 57.277 33.333 0.00 0.00 0.00 3.16
3336 7242 3.691118 CCATGATGTCTGTTGTAAGTGGG 59.309 47.826 0.00 0.00 0.00 4.61
3417 7370 1.152756 GTATGGGGATGGCGGCTTT 60.153 57.895 11.43 0.00 0.00 3.51
3425 7378 5.039645 AGGGGTAGATTATGTATGGGGATG 58.960 45.833 0.00 0.00 0.00 3.51
3458 7411 1.877576 CGTGTCCAGGAGCAGCTGTA 61.878 60.000 16.64 0.00 0.00 2.74
3459 7412 2.746359 GTGTCCAGGAGCAGCTGT 59.254 61.111 16.64 1.59 0.00 4.40
3480 7451 6.369065 CACAAAAATCTACTAGAAGGCGTCTT 59.631 38.462 8.55 0.00 37.84 3.01
3484 7455 4.201822 GGCACAAAAATCTACTAGAAGGCG 60.202 45.833 0.00 0.00 0.00 5.52
3770 7745 7.920160 AATTTGACATCCTGTTTTGTTTTGT 57.080 28.000 0.00 0.00 0.00 2.83
3865 7841 1.289160 TCTGGACCAAATCTCCCCTG 58.711 55.000 0.00 0.00 0.00 4.45
3897 7874 5.642919 TCCGGTTGTTTGTTGTATATGTACC 59.357 40.000 0.00 0.00 0.00 3.34
4028 8005 2.291741 GGCAGAACAGGACACAGAAAAG 59.708 50.000 0.00 0.00 0.00 2.27
4257 8235 2.414559 CCGCGAACAAAGATTGAAGCAT 60.415 45.455 8.23 0.00 0.00 3.79
4313 8291 4.406003 TCTCTCTTTTGTATCAGCTACCCC 59.594 45.833 0.00 0.00 0.00 4.95
4612 8729 5.287226 AGCTGATTTTGTTGAGAAAAGCTG 58.713 37.500 0.00 4.33 33.36 4.24
4843 8996 8.333908 CAGTCATTGATAGCAAGTTCATTAGTC 58.666 37.037 0.00 0.00 37.45 2.59
5430 10032 4.220821 TGCTCGTAGAAAGAAGGAAGATGT 59.779 41.667 0.00 0.00 34.09 3.06
5444 10046 0.037734 TCACCAGTCCTGCTCGTAGA 59.962 55.000 0.00 0.00 0.00 2.59
5593 10195 4.667519 ACCTCGAAATGTATACCAGGAC 57.332 45.455 0.00 0.00 0.00 3.85
5594 10196 4.712829 TGAACCTCGAAATGTATACCAGGA 59.287 41.667 0.00 0.00 0.00 3.86
5597 10199 6.045072 ACTTGAACCTCGAAATGTATACCA 57.955 37.500 0.00 0.00 0.00 3.25
5602 10204 5.051816 ACGAAACTTGAACCTCGAAATGTA 58.948 37.500 0.00 0.00 35.34 2.29
5670 10272 7.224753 CACATTATTAGTGGAGGTATGTGTCAC 59.775 40.741 0.00 0.00 34.09 3.67
5780 10382 3.705604 CATTATTGCTCCGGCGAAAATT 58.294 40.909 9.30 0.00 42.25 1.82
5829 10431 1.439679 CAGTAGGAAACGACTTGGGC 58.560 55.000 0.00 0.00 44.50 5.36
5963 10568 7.283254 CGCAACCAATGTGTCTATATAGATC 57.717 40.000 15.43 11.94 34.39 2.75
5979 10584 4.279671 ACAAAGGAATATGAACGCAACCAA 59.720 37.500 0.00 0.00 0.00 3.67
6080 10686 1.331214 ACAACCCTTGGAGCATTGTG 58.669 50.000 0.00 0.00 32.42 3.33
6151 10757 0.329596 GACCAACTGCAGGGAAGGAT 59.670 55.000 19.93 5.00 0.00 3.24
6299 10905 5.588240 TCTTTGTGTGTACTGTGTAGTCAG 58.412 41.667 0.00 0.00 38.36 3.51
6684 11313 6.820656 AGATAGGAATAGCAAGTTGTGTCTTG 59.179 38.462 4.48 2.58 45.09 3.02
7058 11693 1.078918 CCTGGATGCTGCGAGACAA 60.079 57.895 0.00 0.00 0.00 3.18
7062 11697 1.067749 CTCTCCTGGATGCTGCGAG 59.932 63.158 0.00 0.00 0.00 5.03
7104 11740 7.707893 CACATATCCCCTTCATTTAGCAAAAAG 59.292 37.037 0.00 0.00 0.00 2.27
7276 11948 5.234543 GCTCGTTTCAGTGGGAAGATATTAC 59.765 44.000 0.00 0.00 36.72 1.89
7281 11954 1.347707 TGCTCGTTTCAGTGGGAAGAT 59.652 47.619 0.00 0.00 36.72 2.40
7333 12027 1.305201 GGAATGTGTGGAACGTGTGT 58.695 50.000 0.00 0.00 42.39 3.72
7356 12050 3.607078 GCTCATTTTTCGATACGGCCATC 60.607 47.826 2.24 0.00 0.00 3.51
7363 12057 2.615262 GTCGCGCTCATTTTTCGATAC 58.385 47.619 5.56 0.00 0.00 2.24
7568 12474 1.295357 TGGTTAGCATCGCCACAACG 61.295 55.000 0.00 0.00 0.00 4.10
7577 12489 0.958382 TGCCGGTGTTGGTTAGCATC 60.958 55.000 1.90 0.00 0.00 3.91
7601 12513 2.037687 TTGCTTGGCATGGGGAGG 59.962 61.111 2.33 0.00 38.76 4.30
7803 12729 2.159819 CTCTCACCGTGTCACCCTGG 62.160 65.000 0.00 0.00 0.00 4.45
7867 12800 4.142816 CGGCATCCAGTGTTAAGAGAAAAG 60.143 45.833 0.00 0.00 0.00 2.27
7913 15007 6.879276 TGTCGTAATTTGAACAAATACCCA 57.121 33.333 12.20 4.42 39.88 4.51
7957 15051 8.641155 CAAATGCTCATACAAAGTGTGTTAATG 58.359 33.333 0.00 0.00 41.98 1.90
7987 15200 7.408123 TCACAAATTAAGCTGCAATTTTGTTG 58.592 30.769 17.64 11.79 34.22 3.33
8059 17001 1.746220 ACTGTACTCATCTCTGACGGC 59.254 52.381 0.00 0.00 0.00 5.68
8104 19075 2.608506 GCTGCAGTGCATCATGTTTTGA 60.609 45.455 20.10 0.00 38.13 2.69
8105 19076 1.724623 GCTGCAGTGCATCATGTTTTG 59.275 47.619 20.10 4.46 38.13 2.44
8107 19078 1.254026 AGCTGCAGTGCATCATGTTT 58.746 45.000 20.10 0.00 38.13 2.83
8288 19287 5.611374 AGAAAAATGACAGGAAAGAGACGA 58.389 37.500 0.00 0.00 0.00 4.20
8289 19288 5.931441 AGAAAAATGACAGGAAAGAGACG 57.069 39.130 0.00 0.00 0.00 4.18
8352 19377 4.624364 CGGCAGGTGTGGTCAGCA 62.624 66.667 0.00 0.00 43.57 4.41
8496 19523 1.558233 ATACGGAGCTATGGGCCTAC 58.442 55.000 4.53 0.00 43.05 3.18
8511 19538 3.482472 GTGAACACGATGCAGAGTATACG 59.518 47.826 0.00 0.00 0.00 3.06
8521 19548 2.027073 TCGCCTGTGAACACGATGC 61.027 57.895 0.00 2.60 0.00 3.91
8522 19549 1.781555 GTCGCCTGTGAACACGATG 59.218 57.895 0.00 0.00 36.85 3.84
8523 19550 1.733041 CGTCGCCTGTGAACACGAT 60.733 57.895 0.00 0.00 36.85 3.73
8548 19580 1.303282 GAGCCCGGGAAACATCCTT 59.697 57.895 29.31 0.00 0.00 3.36
8601 19642 2.673368 GCATCTAGTATTGCGGTATGCC 59.327 50.000 0.00 0.00 45.60 4.40
8659 19730 3.615155 AGAGAAATTTCCTGCCTGTAGC 58.385 45.455 14.61 0.00 44.14 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.