Multiple sequence alignment - TraesCS2D01G486100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G486100 chr2D 100.000 4239 0 0 1 4239 586768598 586772836 0.000000e+00 7829.0
1 TraesCS2D01G486100 chr2D 94.967 1351 61 5 611 1959 586693371 586694716 0.000000e+00 2111.0
2 TraesCS2D01G486100 chr2D 92.006 1351 86 12 611 1959 586571547 586572877 0.000000e+00 1877.0
3 TraesCS2D01G486100 chr2D 95.340 1073 25 5 1959 3030 586694974 586696022 0.000000e+00 1681.0
4 TraesCS2D01G486100 chr2D 95.552 607 23 3 5 607 48012338 48011732 0.000000e+00 968.0
5 TraesCS2D01G486100 chr2D 90.239 461 28 9 3023 3466 586695786 586696246 1.700000e-163 586.0
6 TraesCS2D01G486100 chr2D 81.265 427 39 15 2604 3030 586574871 586575256 1.480000e-79 307.0
7 TraesCS2D01G486100 chr2D 89.474 228 17 7 1711 1936 586573676 586573898 8.970000e-72 281.0
8 TraesCS2D01G486100 chr2D 88.839 224 18 4 3734 3954 586575675 586575894 6.990000e-68 268.0
9 TraesCS2D01G486100 chr2D 85.448 268 25 9 3027 3284 586575036 586575299 2.510000e-67 267.0
10 TraesCS2D01G486100 chr2D 82.700 237 24 9 3023 3242 586771391 586771627 1.200000e-45 195.0
11 TraesCS2D01G486100 chr2D 82.700 237 24 9 2794 3030 586771620 586771839 1.200000e-45 195.0
12 TraesCS2D01G486100 chr2D 95.000 120 3 2 3734 3853 586696338 586696454 7.240000e-43 185.0
13 TraesCS2D01G486100 chr2B 94.259 1080 51 8 1959 3030 708185183 708186259 0.000000e+00 1640.0
14 TraesCS2D01G486100 chr2B 94.373 1013 52 3 611 1623 708183616 708184623 0.000000e+00 1550.0
15 TraesCS2D01G486100 chr2B 94.930 355 18 0 3105 3459 708186122 708186476 1.330000e-154 556.0
16 TraesCS2D01G486100 chr2B 90.873 252 12 3 1709 1959 708184681 708184922 1.140000e-85 327.0
17 TraesCS2D01G486100 chr2B 92.544 228 9 1 4012 4239 708192840 708193059 1.900000e-83 320.0
18 TraesCS2D01G486100 chr2B 86.758 219 22 4 3735 3951 708189059 708189272 1.970000e-58 237.0
19 TraesCS2D01G486100 chr2B 92.086 139 10 1 3815 3952 708186963 708187101 1.200000e-45 195.0
20 TraesCS2D01G486100 chr2B 90.526 95 1 1 3734 3828 708186599 708186685 7.450000e-23 119.0
21 TraesCS2D01G486100 chr2A 92.365 1074 70 4 611 1676 721504626 721505695 0.000000e+00 1519.0
22 TraesCS2D01G486100 chr2A 92.442 688 40 5 2351 3030 721519233 721519916 0.000000e+00 972.0
23 TraesCS2D01G486100 chr2A 85.466 461 36 11 3023 3466 721519680 721520126 6.460000e-123 451.0
24 TraesCS2D01G486100 chr2A 92.017 238 11 4 3735 3964 721520234 721520471 1.140000e-85 327.0
25 TraesCS2D01G486100 chr2A 94.245 139 8 0 1669 1807 721519099 721519237 3.320000e-51 213.0
26 TraesCS2D01G486100 chr7D 95.915 612 20 4 1 607 549830368 549829757 0.000000e+00 987.0
27 TraesCS2D01G486100 chr7D 95.417 611 24 3 1 607 58172036 58171426 0.000000e+00 970.0
28 TraesCS2D01G486100 chr7D 95.238 609 27 2 1 607 8748369 8747761 0.000000e+00 963.0
29 TraesCS2D01G486100 chr7D 91.667 48 3 1 2533 2579 610217761 610217714 9.840000e-07 65.8
30 TraesCS2D01G486100 chr5D 95.745 611 22 3 1 607 528885428 528884818 0.000000e+00 981.0
31 TraesCS2D01G486100 chr5D 95.559 608 21 5 5 607 558252483 558251877 0.000000e+00 968.0
32 TraesCS2D01G486100 chr1D 95.417 611 24 3 1 607 79155004 79155614 0.000000e+00 970.0
33 TraesCS2D01G486100 chr1D 95.702 605 22 3 7 607 408856147 408855543 0.000000e+00 970.0
34 TraesCS2D01G486100 chr1D 93.750 112 7 0 3465 3576 41754462 41754351 7.290000e-38 169.0
35 TraesCS2D01G486100 chr6D 95.261 612 24 4 1 607 8274190 8273579 0.000000e+00 965.0
36 TraesCS2D01G486100 chr6D 73.124 986 208 38 611 1569 41545132 41544177 2.480000e-77 300.0
37 TraesCS2D01G486100 chr6D 97.297 111 3 0 3462 3572 68900011 68899901 5.600000e-44 189.0
38 TraesCS2D01G486100 chr6D 94.690 113 6 0 3460 3572 79857099 79857211 4.360000e-40 176.0
39 TraesCS2D01G486100 chr4A 82.601 592 81 10 611 1182 514353438 514354027 1.760000e-138 503.0
40 TraesCS2D01G486100 chr4A 87.574 169 14 5 1707 1870 514354553 514354719 5.600000e-44 189.0
41 TraesCS2D01G486100 chr4B 81.940 598 87 9 611 1188 106049212 106048616 1.770000e-133 486.0
42 TraesCS2D01G486100 chr4B 88.535 157 14 4 1707 1860 106048090 106047935 2.010000e-43 187.0
43 TraesCS2D01G486100 chr4D 83.117 462 56 9 1238 1693 73992742 73992297 6.600000e-108 401.0
44 TraesCS2D01G486100 chr4D 89.308 159 13 3 1707 1862 73992244 73992087 3.340000e-46 196.0
45 TraesCS2D01G486100 chr4D 88.667 150 12 5 1707 1852 73991391 73991243 1.210000e-40 178.0
46 TraesCS2D01G486100 chr5A 80.336 417 73 5 1226 1639 657550826 657551236 1.480000e-79 307.0
47 TraesCS2D01G486100 chr5A 94.643 112 6 0 3463 3574 422874848 422874737 1.570000e-39 174.0
48 TraesCS2D01G486100 chr7A 84.229 279 32 4 3962 4239 652341641 652341908 1.170000e-65 261.0
49 TraesCS2D01G486100 chrUn 86.758 219 22 4 3735 3951 333088646 333088433 1.970000e-58 237.0
50 TraesCS2D01G486100 chrUn 91.837 49 3 1 2528 2575 11035642 11035690 2.740000e-07 67.6
51 TraesCS2D01G486100 chr6B 76.559 401 75 15 611 997 62001470 62001865 7.190000e-48 202.0
52 TraesCS2D01G486100 chr6B 96.396 111 4 0 3464 3574 520852430 520852320 2.600000e-42 183.0
53 TraesCS2D01G486100 chr6A 76.441 399 79 12 611 997 33967307 33967702 7.190000e-48 202.0
54 TraesCS2D01G486100 chr6A 93.162 117 6 2 3460 3574 516579137 516579021 2.030000e-38 171.0
55 TraesCS2D01G486100 chr6A 72.621 599 131 26 611 1185 30905676 30905087 2.620000e-37 167.0
56 TraesCS2D01G486100 chr6A 92.857 42 1 2 2526 2566 457088791 457088831 4.580000e-05 60.2
57 TraesCS2D01G486100 chr3D 94.872 117 6 0 3456 3572 55745092 55744976 2.600000e-42 183.0
58 TraesCS2D01G486100 chr5B 95.455 110 5 0 3463 3572 51836919 51836810 4.360000e-40 176.0
59 TraesCS2D01G486100 chr5B 91.304 46 2 2 2522 2565 224322085 224322040 1.270000e-05 62.1
60 TraesCS2D01G486100 chr5B 90.909 44 3 1 2516 2558 698467302 698467259 1.650000e-04 58.4
61 TraesCS2D01G486100 chr3A 93.220 118 7 1 3465 3582 91478336 91478220 5.630000e-39 172.0
62 TraesCS2D01G486100 chr1B 91.489 47 3 1 2528 2573 411573097 411573143 3.540000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G486100 chr2D 586768598 586772836 4238 False 2739.666667 7829 88.466667 1 4239 3 chr2D.!!$F3 4238
1 TraesCS2D01G486100 chr2D 586693371 586696454 3083 False 1140.750000 2111 93.886500 611 3853 4 chr2D.!!$F2 3242
2 TraesCS2D01G486100 chr2D 48011732 48012338 606 True 968.000000 968 95.552000 5 607 1 chr2D.!!$R1 602
3 TraesCS2D01G486100 chr2D 586571547 586575894 4347 False 600.000000 1877 87.406400 611 3954 5 chr2D.!!$F1 3343
4 TraesCS2D01G486100 chr2B 708183616 708193059 9443 False 618.000000 1640 92.043625 611 4239 8 chr2B.!!$F1 3628
5 TraesCS2D01G486100 chr2A 721504626 721505695 1069 False 1519.000000 1519 92.365000 611 1676 1 chr2A.!!$F1 1065
6 TraesCS2D01G486100 chr2A 721519099 721520471 1372 False 490.750000 972 91.042500 1669 3964 4 chr2A.!!$F2 2295
7 TraesCS2D01G486100 chr7D 549829757 549830368 611 True 987.000000 987 95.915000 1 607 1 chr7D.!!$R3 606
8 TraesCS2D01G486100 chr7D 58171426 58172036 610 True 970.000000 970 95.417000 1 607 1 chr7D.!!$R2 606
9 TraesCS2D01G486100 chr7D 8747761 8748369 608 True 963.000000 963 95.238000 1 607 1 chr7D.!!$R1 606
10 TraesCS2D01G486100 chr5D 528884818 528885428 610 True 981.000000 981 95.745000 1 607 1 chr5D.!!$R1 606
11 TraesCS2D01G486100 chr5D 558251877 558252483 606 True 968.000000 968 95.559000 5 607 1 chr5D.!!$R2 602
12 TraesCS2D01G486100 chr1D 79155004 79155614 610 False 970.000000 970 95.417000 1 607 1 chr1D.!!$F1 606
13 TraesCS2D01G486100 chr1D 408855543 408856147 604 True 970.000000 970 95.702000 7 607 1 chr1D.!!$R2 600
14 TraesCS2D01G486100 chr6D 8273579 8274190 611 True 965.000000 965 95.261000 1 607 1 chr6D.!!$R1 606
15 TraesCS2D01G486100 chr6D 41544177 41545132 955 True 300.000000 300 73.124000 611 1569 1 chr6D.!!$R2 958
16 TraesCS2D01G486100 chr4A 514353438 514354719 1281 False 346.000000 503 85.087500 611 1870 2 chr4A.!!$F1 1259
17 TraesCS2D01G486100 chr4B 106047935 106049212 1277 True 336.500000 486 85.237500 611 1860 2 chr4B.!!$R1 1249
18 TraesCS2D01G486100 chr4D 73991243 73992742 1499 True 258.333333 401 87.030667 1238 1862 3 chr4D.!!$R1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 608 0.035458 CGACCTGAACCAAAGCCTCT 59.965 55.000 0.0 0.0 0.00 3.69 F
630 635 1.692042 CCTCCTCCACAGGCTCCAT 60.692 63.158 0.0 0.0 40.12 3.41 F
1061 1104 1.828595 TGCGGCTGGATTCTACTACAA 59.171 47.619 0.0 0.0 0.00 2.41 F
2596 5055 1.326245 GTTGAACTTGTTTTTGGGCGC 59.674 47.619 0.0 0.0 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2585 5044 0.891904 TACTCCCTGCGCCCAAAAAC 60.892 55.0 4.18 0.0 0.0 2.43 R
2593 5052 2.159085 AGATAACAACTACTCCCTGCGC 60.159 50.0 0.00 0.0 0.0 6.09 R
3007 5468 0.247460 TCAGACATGGGTGAGCTTCG 59.753 55.0 0.00 0.0 0.0 3.79 R
3726 6305 0.033601 ATTCAATAACCAGCCCCGCA 60.034 50.0 0.00 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 105 1.296056 CGGCGGTGAAGACGGAAATT 61.296 55.000 0.00 0.00 39.34 1.82
128 130 1.520120 GACGGGCCGCTAAACCTAC 60.520 63.158 28.71 2.49 0.00 3.18
205 207 0.037590 TAGTGTGGCTCGGGCATTTT 59.962 50.000 10.74 0.00 40.92 1.82
408 410 1.451207 CGCCAACCGGGATCAATGA 60.451 57.895 6.32 0.00 40.01 2.57
496 499 4.141876 CCGGGACCAATGCCCCAT 62.142 66.667 9.10 0.00 42.92 4.00
544 549 3.716195 CGGGACCAGTGCCCATGA 61.716 66.667 2.43 0.00 46.36 3.07
556 561 1.335132 GCCCATGAGTCCCGGTTCTA 61.335 60.000 0.00 0.00 0.00 2.10
601 606 1.073199 CCGACCTGAACCAAAGCCT 59.927 57.895 0.00 0.00 0.00 4.58
602 607 0.955919 CCGACCTGAACCAAAGCCTC 60.956 60.000 0.00 0.00 0.00 4.70
603 608 0.035458 CGACCTGAACCAAAGCCTCT 59.965 55.000 0.00 0.00 0.00 3.69
607 612 2.695147 ACCTGAACCAAAGCCTCTTTTG 59.305 45.455 0.00 0.00 37.70 2.44
608 613 2.695147 CCTGAACCAAAGCCTCTTTTGT 59.305 45.455 0.00 0.00 36.54 2.83
609 614 3.132824 CCTGAACCAAAGCCTCTTTTGTT 59.867 43.478 8.03 8.03 36.54 2.83
630 635 1.692042 CCTCCTCCACAGGCTCCAT 60.692 63.158 0.00 0.00 40.12 3.41
978 1003 2.478709 CGTGTACTCATCAGAGACAGGC 60.479 54.545 0.00 0.00 44.98 4.85
1061 1104 1.828595 TGCGGCTGGATTCTACTACAA 59.171 47.619 0.00 0.00 0.00 2.41
2041 4303 7.509318 ACATACAATTGGAGATACTAGTAGCCA 59.491 37.037 14.41 14.49 0.00 4.75
2558 5017 4.506625 CCCTCTGTCCCAAAATAAGTGTCA 60.507 45.833 0.00 0.00 0.00 3.58
2566 5025 4.931002 CCCAAAATAAGTGTCATGGCTTTG 59.069 41.667 0.00 0.00 0.00 2.77
2575 5034 5.783111 AGTGTCATGGCTTTGGTTAAATTC 58.217 37.500 0.00 0.00 0.00 2.17
2585 5044 6.292114 GGCTTTGGTTAAATTCGTTGAACTTG 60.292 38.462 0.00 0.00 0.00 3.16
2593 5052 6.415798 AAATTCGTTGAACTTGTTTTTGGG 57.584 33.333 0.00 0.00 0.00 4.12
2596 5055 1.326245 GTTGAACTTGTTTTTGGGCGC 59.674 47.619 0.00 0.00 0.00 6.53
2634 5093 5.363562 TCTTCACATGTAGAGATTGCCAT 57.636 39.130 0.00 0.00 0.00 4.40
2651 5110 2.819608 GCCATAGACCATGTGTGTTTGT 59.180 45.455 0.00 0.00 32.21 2.83
2657 5116 4.776349 AGACCATGTGTGTTTGTTAGTGA 58.224 39.130 0.00 0.00 0.00 3.41
2774 5233 7.966246 TGCATGCAAACTTTTAAATCTCATT 57.034 28.000 20.30 0.00 0.00 2.57
2996 5457 9.449719 AATAACTTTTCAGATCGTGGTAGATTT 57.550 29.630 0.00 0.00 0.00 2.17
2997 5458 6.969828 ACTTTTCAGATCGTGGTAGATTTC 57.030 37.500 0.00 0.00 0.00 2.17
2998 5459 5.875359 ACTTTTCAGATCGTGGTAGATTTCC 59.125 40.000 0.00 0.00 0.00 3.13
2999 5460 5.414789 TTTCAGATCGTGGTAGATTTCCA 57.585 39.130 0.00 0.00 0.00 3.53
3000 5461 5.614324 TTCAGATCGTGGTAGATTTCCAT 57.386 39.130 0.00 0.00 37.30 3.41
3001 5462 5.201713 TCAGATCGTGGTAGATTTCCATC 57.798 43.478 0.00 0.00 37.30 3.51
3002 5463 3.983988 CAGATCGTGGTAGATTTCCATCG 59.016 47.826 0.00 0.00 37.30 3.84
3003 5464 2.218953 TCGTGGTAGATTTCCATCGC 57.781 50.000 0.00 0.00 37.30 4.58
3004 5465 1.754803 TCGTGGTAGATTTCCATCGCT 59.245 47.619 0.00 0.00 37.30 4.93
3005 5466 1.860950 CGTGGTAGATTTCCATCGCTG 59.139 52.381 0.00 0.00 37.30 5.18
3006 5467 2.213499 GTGGTAGATTTCCATCGCTGG 58.787 52.381 0.00 0.00 44.64 4.85
3007 5468 1.230324 GGTAGATTTCCATCGCTGGC 58.770 55.000 0.00 0.00 42.80 4.85
3008 5469 0.861837 GTAGATTTCCATCGCTGGCG 59.138 55.000 8.80 8.80 42.80 5.69
3025 5486 2.759783 CGAAGCTCACCCATGTCTG 58.240 57.895 0.00 0.00 0.00 3.51
3026 5487 0.247460 CGAAGCTCACCCATGTCTGA 59.753 55.000 0.00 0.00 0.00 3.27
3027 5488 1.134580 CGAAGCTCACCCATGTCTGAT 60.135 52.381 0.00 0.00 0.00 2.90
3028 5489 2.101415 CGAAGCTCACCCATGTCTGATA 59.899 50.000 0.00 0.00 0.00 2.15
3029 5490 3.244009 CGAAGCTCACCCATGTCTGATAT 60.244 47.826 0.00 0.00 0.00 1.63
3030 5491 4.712476 GAAGCTCACCCATGTCTGATATT 58.288 43.478 0.00 0.00 0.00 1.28
3031 5492 4.348863 AGCTCACCCATGTCTGATATTC 57.651 45.455 0.00 0.00 0.00 1.75
3032 5493 3.972638 AGCTCACCCATGTCTGATATTCT 59.027 43.478 0.00 0.00 0.00 2.40
3033 5494 4.411540 AGCTCACCCATGTCTGATATTCTT 59.588 41.667 0.00 0.00 0.00 2.52
3034 5495 4.754114 GCTCACCCATGTCTGATATTCTTC 59.246 45.833 0.00 0.00 0.00 2.87
3035 5496 5.454471 GCTCACCCATGTCTGATATTCTTCT 60.454 44.000 0.00 0.00 0.00 2.85
3036 5497 6.166984 TCACCCATGTCTGATATTCTTCTC 57.833 41.667 0.00 0.00 0.00 2.87
3037 5498 5.901853 TCACCCATGTCTGATATTCTTCTCT 59.098 40.000 0.00 0.00 0.00 3.10
3038 5499 5.990386 CACCCATGTCTGATATTCTTCTCTG 59.010 44.000 0.00 0.00 0.00 3.35
3039 5500 5.901853 ACCCATGTCTGATATTCTTCTCTGA 59.098 40.000 0.00 0.00 0.00 3.27
3040 5501 6.385176 ACCCATGTCTGATATTCTTCTCTGAA 59.615 38.462 0.00 0.00 0.00 3.02
3041 5502 7.072202 ACCCATGTCTGATATTCTTCTCTGAAT 59.928 37.037 0.00 0.00 39.63 2.57
3042 5503 7.937942 CCCATGTCTGATATTCTTCTCTGAATT 59.062 37.037 0.00 0.00 37.73 2.17
3043 5504 9.993454 CCATGTCTGATATTCTTCTCTGAATTA 57.007 33.333 0.00 0.00 37.73 1.40
3075 5536 8.846943 TGTTTTTCTTGTATATCTGAAGCTCA 57.153 30.769 0.00 0.00 0.00 4.26
3076 5537 9.453572 TGTTTTTCTTGTATATCTGAAGCTCAT 57.546 29.630 0.00 0.00 0.00 2.90
3117 5578 8.836268 TGTAAAGACCTTTCGTATTATGTTGT 57.164 30.769 0.00 0.00 34.23 3.32
3118 5579 9.926158 TGTAAAGACCTTTCGTATTATGTTGTA 57.074 29.630 0.00 0.00 34.23 2.41
3121 5582 9.498176 AAAGACCTTTCGTATTATGTTGTACTT 57.502 29.630 0.00 0.00 0.00 2.24
3122 5583 8.475331 AGACCTTTCGTATTATGTTGTACTTG 57.525 34.615 0.00 0.00 0.00 3.16
3123 5584 8.092687 AGACCTTTCGTATTATGTTGTACTTGT 58.907 33.333 0.00 0.00 0.00 3.16
3124 5585 9.357652 GACCTTTCGTATTATGTTGTACTTGTA 57.642 33.333 0.00 0.00 0.00 2.41
3125 5586 9.880157 ACCTTTCGTATTATGTTGTACTTGTAT 57.120 29.630 0.00 0.00 0.00 2.29
3142 5603 9.651718 GTACTTGTATATAGCAAATCAAACTGC 57.348 33.333 0.00 0.00 38.91 4.40
3143 5604 8.279970 ACTTGTATATAGCAAATCAAACTGCA 57.720 30.769 0.00 0.00 41.17 4.41
3144 5605 8.739039 ACTTGTATATAGCAAATCAAACTGCAA 58.261 29.630 0.00 0.00 41.17 4.08
3145 5606 9.571810 CTTGTATATAGCAAATCAAACTGCAAA 57.428 29.630 0.00 0.00 41.17 3.68
3147 5608 9.518906 TGTATATAGCAAATCAAACTGCAAATG 57.481 29.630 0.00 0.00 41.17 2.32
3148 5609 5.789710 ATAGCAAATCAAACTGCAAATGC 57.210 34.783 0.00 0.00 41.17 3.56
3149 5610 3.735591 AGCAAATCAAACTGCAAATGCT 58.264 36.364 6.97 0.00 41.17 3.79
3150 5611 3.496884 AGCAAATCAAACTGCAAATGCTG 59.503 39.130 10.28 10.28 41.01 4.41
3151 5612 3.495377 GCAAATCAAACTGCAAATGCTGA 59.505 39.130 17.56 8.17 41.71 4.26
3152 5613 4.609783 GCAAATCAAACTGCAAATGCTGAC 60.610 41.667 17.56 0.00 41.71 3.51
3153 5614 4.595762 AATCAAACTGCAAATGCTGACT 57.404 36.364 17.56 3.23 41.71 3.41
3154 5615 4.595762 ATCAAACTGCAAATGCTGACTT 57.404 36.364 17.56 8.39 41.71 3.01
3155 5616 3.708890 TCAAACTGCAAATGCTGACTTG 58.291 40.909 17.56 17.33 41.71 3.16
3156 5617 2.798283 CAAACTGCAAATGCTGACTTGG 59.202 45.455 17.56 0.00 41.71 3.61
3157 5618 1.985473 ACTGCAAATGCTGACTTGGA 58.015 45.000 17.56 0.00 41.71 3.53
3158 5619 2.309613 ACTGCAAATGCTGACTTGGAA 58.690 42.857 17.56 0.00 41.71 3.53
3159 5620 2.895404 ACTGCAAATGCTGACTTGGAAT 59.105 40.909 17.56 0.00 41.71 3.01
3160 5621 3.250744 CTGCAAATGCTGACTTGGAATG 58.749 45.455 6.97 0.00 41.71 2.67
3161 5622 2.629137 TGCAAATGCTGACTTGGAATGT 59.371 40.909 6.97 0.00 42.66 2.71
3162 5623 3.069872 TGCAAATGCTGACTTGGAATGTT 59.930 39.130 6.97 0.00 42.66 2.71
3163 5624 3.430895 GCAAATGCTGACTTGGAATGTTG 59.569 43.478 0.00 0.00 38.21 3.33
3164 5625 3.947910 AATGCTGACTTGGAATGTTGG 57.052 42.857 0.00 0.00 0.00 3.77
3165 5626 2.363306 TGCTGACTTGGAATGTTGGT 57.637 45.000 0.00 0.00 0.00 3.67
3166 5627 2.665165 TGCTGACTTGGAATGTTGGTT 58.335 42.857 0.00 0.00 0.00 3.67
3167 5628 3.030291 TGCTGACTTGGAATGTTGGTTT 58.970 40.909 0.00 0.00 0.00 3.27
3168 5629 3.450457 TGCTGACTTGGAATGTTGGTTTT 59.550 39.130 0.00 0.00 0.00 2.43
3169 5630 3.803778 GCTGACTTGGAATGTTGGTTTTG 59.196 43.478 0.00 0.00 0.00 2.44
3170 5631 4.441356 GCTGACTTGGAATGTTGGTTTTGA 60.441 41.667 0.00 0.00 0.00 2.69
3171 5632 5.739935 GCTGACTTGGAATGTTGGTTTTGAT 60.740 40.000 0.00 0.00 0.00 2.57
3172 5633 6.232581 TGACTTGGAATGTTGGTTTTGATT 57.767 33.333 0.00 0.00 0.00 2.57
3173 5634 6.648192 TGACTTGGAATGTTGGTTTTGATTT 58.352 32.000 0.00 0.00 0.00 2.17
3174 5635 7.108847 TGACTTGGAATGTTGGTTTTGATTTT 58.891 30.769 0.00 0.00 0.00 1.82
3175 5636 7.609532 TGACTTGGAATGTTGGTTTTGATTTTT 59.390 29.630 0.00 0.00 0.00 1.94
3176 5637 7.760437 ACTTGGAATGTTGGTTTTGATTTTTG 58.240 30.769 0.00 0.00 0.00 2.44
3177 5638 7.392953 ACTTGGAATGTTGGTTTTGATTTTTGT 59.607 29.630 0.00 0.00 0.00 2.83
3178 5639 7.081526 TGGAATGTTGGTTTTGATTTTTGTG 57.918 32.000 0.00 0.00 0.00 3.33
3179 5640 5.970612 GGAATGTTGGTTTTGATTTTTGTGC 59.029 36.000 0.00 0.00 0.00 4.57
3180 5641 6.404074 GGAATGTTGGTTTTGATTTTTGTGCA 60.404 34.615 0.00 0.00 0.00 4.57
3181 5642 6.696441 ATGTTGGTTTTGATTTTTGTGCAT 57.304 29.167 0.00 0.00 0.00 3.96
3182 5643 7.798596 ATGTTGGTTTTGATTTTTGTGCATA 57.201 28.000 0.00 0.00 0.00 3.14
3183 5644 7.615582 TGTTGGTTTTGATTTTTGTGCATAA 57.384 28.000 0.00 0.00 0.00 1.90
3184 5645 8.218338 TGTTGGTTTTGATTTTTGTGCATAAT 57.782 26.923 0.00 0.00 0.00 1.28
3185 5646 9.330063 TGTTGGTTTTGATTTTTGTGCATAATA 57.670 25.926 0.00 0.00 0.00 0.98
3188 5649 9.553064 TGGTTTTGATTTTTGTGCATAATAACT 57.447 25.926 0.00 0.00 0.00 2.24
3194 5655 9.844790 TGATTTTTGTGCATAATAACTTCTCAG 57.155 29.630 0.00 0.00 0.00 3.35
3198 5659 7.468922 TTGTGCATAATAACTTCTCAGATCG 57.531 36.000 0.00 0.00 0.00 3.69
3199 5660 6.573434 TGTGCATAATAACTTCTCAGATCGT 58.427 36.000 0.00 0.00 0.00 3.73
3200 5661 6.476706 TGTGCATAATAACTTCTCAGATCGTG 59.523 38.462 0.00 0.00 0.00 4.35
3201 5662 5.985530 TGCATAATAACTTCTCAGATCGTGG 59.014 40.000 0.00 0.00 0.00 4.94
3202 5663 5.986135 GCATAATAACTTCTCAGATCGTGGT 59.014 40.000 0.00 0.00 0.00 4.16
3203 5664 7.145985 GCATAATAACTTCTCAGATCGTGGTA 58.854 38.462 0.00 0.00 0.00 3.25
3204 5665 7.327275 GCATAATAACTTCTCAGATCGTGGTAG 59.673 40.741 0.00 0.00 0.00 3.18
3205 5666 8.568794 CATAATAACTTCTCAGATCGTGGTAGA 58.431 37.037 0.00 0.00 0.00 2.59
3206 5667 7.589958 AATAACTTCTCAGATCGTGGTAGAT 57.410 36.000 0.00 0.00 0.00 1.98
3207 5668 5.923733 AACTTCTCAGATCGTGGTAGATT 57.076 39.130 0.00 0.00 0.00 2.40
3248 5754 0.389025 TGATGTCTGATATGCGCCGT 59.611 50.000 4.18 0.00 0.00 5.68
3375 5881 1.226746 GTTGAGTAGGCAAAGCACGT 58.773 50.000 0.00 0.00 0.00 4.49
3420 5926 6.980397 CCAAAACTAGGGATGCATAATTTGAC 59.020 38.462 14.30 0.00 0.00 3.18
3433 5939 5.507985 GCATAATTTGACTTATCTGGGCCAC 60.508 44.000 0.00 0.00 0.00 5.01
3464 5978 6.068010 TGTCCAAAGTTCATCCAAATGTACT 58.932 36.000 0.00 0.00 43.10 2.73
3465 5979 7.227873 TGTCCAAAGTTCATCCAAATGTACTA 58.772 34.615 0.00 0.00 41.16 1.82
3466 5980 7.174253 TGTCCAAAGTTCATCCAAATGTACTAC 59.826 37.037 0.00 0.00 41.16 2.73
3467 5981 7.390718 GTCCAAAGTTCATCCAAATGTACTACT 59.609 37.037 0.00 0.00 41.16 2.57
3468 5982 7.606456 TCCAAAGTTCATCCAAATGTACTACTC 59.394 37.037 0.00 0.00 41.16 2.59
3469 5983 7.148239 CCAAAGTTCATCCAAATGTACTACTCC 60.148 40.741 0.00 0.00 41.16 3.85
3470 5984 5.990668 AGTTCATCCAAATGTACTACTCCC 58.009 41.667 0.00 0.00 40.50 4.30
3471 5985 5.726793 AGTTCATCCAAATGTACTACTCCCT 59.273 40.000 0.00 0.00 40.50 4.20
3472 5986 5.871396 TCATCCAAATGTACTACTCCCTC 57.129 43.478 0.00 0.00 34.32 4.30
3473 5987 4.654262 TCATCCAAATGTACTACTCCCTCC 59.346 45.833 0.00 0.00 34.32 4.30
3474 5988 3.028850 TCCAAATGTACTACTCCCTCCG 58.971 50.000 0.00 0.00 0.00 4.63
3475 5989 2.764572 CCAAATGTACTACTCCCTCCGT 59.235 50.000 0.00 0.00 0.00 4.69
3476 5990 3.197116 CCAAATGTACTACTCCCTCCGTT 59.803 47.826 0.00 0.00 0.00 4.44
3477 5991 4.430908 CAAATGTACTACTCCCTCCGTTC 58.569 47.826 0.00 0.00 0.00 3.95
3478 5992 2.885135 TGTACTACTCCCTCCGTTCA 57.115 50.000 0.00 0.00 0.00 3.18
3479 5993 2.440409 TGTACTACTCCCTCCGTTCAC 58.560 52.381 0.00 0.00 0.00 3.18
3480 5994 2.040813 TGTACTACTCCCTCCGTTCACT 59.959 50.000 0.00 0.00 0.00 3.41
3481 5995 2.305858 ACTACTCCCTCCGTTCACTT 57.694 50.000 0.00 0.00 0.00 3.16
3482 5996 2.606378 ACTACTCCCTCCGTTCACTTT 58.394 47.619 0.00 0.00 0.00 2.66
3483 5997 2.970640 ACTACTCCCTCCGTTCACTTTT 59.029 45.455 0.00 0.00 0.00 2.27
3484 5998 4.154942 ACTACTCCCTCCGTTCACTTTTA 58.845 43.478 0.00 0.00 0.00 1.52
3485 5999 4.776308 ACTACTCCCTCCGTTCACTTTTAT 59.224 41.667 0.00 0.00 0.00 1.40
3486 6000 5.954150 ACTACTCCCTCCGTTCACTTTTATA 59.046 40.000 0.00 0.00 0.00 0.98
3487 6001 5.750352 ACTCCCTCCGTTCACTTTTATAA 57.250 39.130 0.00 0.00 0.00 0.98
3488 6002 5.731591 ACTCCCTCCGTTCACTTTTATAAG 58.268 41.667 0.00 0.00 37.40 1.73
3489 6003 5.482878 ACTCCCTCCGTTCACTTTTATAAGA 59.517 40.000 0.00 0.00 35.30 2.10
3490 6004 5.727434 TCCCTCCGTTCACTTTTATAAGAC 58.273 41.667 0.00 0.00 35.30 3.01
3491 6005 4.874396 CCCTCCGTTCACTTTTATAAGACC 59.126 45.833 0.00 0.00 35.30 3.85
3492 6006 5.338137 CCCTCCGTTCACTTTTATAAGACCT 60.338 44.000 0.00 0.00 35.30 3.85
3493 6007 6.171213 CCTCCGTTCACTTTTATAAGACCTT 58.829 40.000 0.00 0.00 35.30 3.50
3494 6008 6.653740 CCTCCGTTCACTTTTATAAGACCTTT 59.346 38.462 0.00 0.00 35.30 3.11
3495 6009 7.174426 CCTCCGTTCACTTTTATAAGACCTTTT 59.826 37.037 0.00 0.00 35.30 2.27
3496 6010 9.211485 CTCCGTTCACTTTTATAAGACCTTTTA 57.789 33.333 0.00 0.00 35.30 1.52
3497 6011 9.211485 TCCGTTCACTTTTATAAGACCTTTTAG 57.789 33.333 0.00 0.00 35.30 1.85
3498 6012 9.211485 CCGTTCACTTTTATAAGACCTTTTAGA 57.789 33.333 0.00 0.00 35.30 2.10
3514 6028 9.569167 GACCTTTTAGACATTTAAAATAGCACC 57.431 33.333 0.00 0.00 33.43 5.01
3515 6029 9.309224 ACCTTTTAGACATTTAAAATAGCACCT 57.691 29.630 0.00 0.00 33.43 4.00
3523 6037 9.908152 GACATTTAAAATAGCACCTAAAACAGT 57.092 29.630 0.00 0.00 0.00 3.55
3534 6048 6.923508 AGCACCTAAAACAGTTTAATTTCAGC 59.076 34.615 0.00 0.00 0.00 4.26
3535 6049 6.923508 GCACCTAAAACAGTTTAATTTCAGCT 59.076 34.615 0.00 0.00 0.00 4.24
3536 6050 7.096065 GCACCTAAAACAGTTTAATTTCAGCTG 60.096 37.037 7.63 7.63 0.00 4.24
3537 6051 7.920682 CACCTAAAACAGTTTAATTTCAGCTGT 59.079 33.333 14.67 0.00 41.51 4.40
3538 6052 8.135529 ACCTAAAACAGTTTAATTTCAGCTGTC 58.864 33.333 14.67 0.00 39.19 3.51
3539 6053 7.595130 CCTAAAACAGTTTAATTTCAGCTGTCC 59.405 37.037 14.67 0.00 39.19 4.02
3540 6054 6.715347 AAACAGTTTAATTTCAGCTGTCCT 57.285 33.333 14.67 0.00 39.19 3.85
3541 6055 7.817418 AAACAGTTTAATTTCAGCTGTCCTA 57.183 32.000 14.67 0.00 39.19 2.94
3542 6056 7.817418 AACAGTTTAATTTCAGCTGTCCTAA 57.183 32.000 14.67 4.81 39.19 2.69
3543 6057 7.817418 ACAGTTTAATTTCAGCTGTCCTAAA 57.183 32.000 14.67 7.20 35.78 1.85
3544 6058 7.649057 ACAGTTTAATTTCAGCTGTCCTAAAC 58.351 34.615 21.98 21.98 35.78 2.01
3545 6059 6.797033 CAGTTTAATTTCAGCTGTCCTAAACG 59.203 38.462 14.67 13.72 34.51 3.60
3546 6060 6.708949 AGTTTAATTTCAGCTGTCCTAAACGA 59.291 34.615 14.67 0.00 34.51 3.85
3547 6061 6.476243 TTAATTTCAGCTGTCCTAAACGAC 57.524 37.500 14.67 0.00 0.00 4.34
3548 6062 3.746045 TTTCAGCTGTCCTAAACGACT 57.254 42.857 14.67 0.00 33.70 4.18
3549 6063 3.746045 TTCAGCTGTCCTAAACGACTT 57.254 42.857 14.67 0.00 33.70 3.01
3550 6064 4.859304 TTCAGCTGTCCTAAACGACTTA 57.141 40.909 14.67 0.00 33.70 2.24
3551 6065 4.170292 TCAGCTGTCCTAAACGACTTAC 57.830 45.455 14.67 0.00 33.70 2.34
3552 6066 3.570975 TCAGCTGTCCTAAACGACTTACA 59.429 43.478 14.67 0.00 33.70 2.41
3553 6067 4.038282 TCAGCTGTCCTAAACGACTTACAA 59.962 41.667 14.67 0.00 33.70 2.41
3554 6068 4.748102 CAGCTGTCCTAAACGACTTACAAA 59.252 41.667 5.25 0.00 33.70 2.83
3555 6069 5.235616 CAGCTGTCCTAAACGACTTACAAAA 59.764 40.000 5.25 0.00 33.70 2.44
3556 6070 5.465724 AGCTGTCCTAAACGACTTACAAAAG 59.534 40.000 0.00 0.00 38.77 2.27
3558 6072 6.592798 TGTCCTAAACGACTTACAAAAGTG 57.407 37.500 0.00 0.00 46.09 3.16
3559 6073 6.339730 TGTCCTAAACGACTTACAAAAGTGA 58.660 36.000 0.00 0.00 46.09 3.41
3560 6074 6.817641 TGTCCTAAACGACTTACAAAAGTGAA 59.182 34.615 0.00 0.00 46.09 3.18
3561 6075 7.121911 GTCCTAAACGACTTACAAAAGTGAAC 58.878 38.462 0.00 0.00 46.09 3.18
3562 6076 6.817641 TCCTAAACGACTTACAAAAGTGAACA 59.182 34.615 0.00 0.00 46.09 3.18
3563 6077 7.010738 TCCTAAACGACTTACAAAAGTGAACAG 59.989 37.037 0.00 0.00 46.09 3.16
3564 6078 6.730960 AAACGACTTACAAAAGTGAACAGA 57.269 33.333 0.00 0.00 46.09 3.41
3565 6079 5.968387 ACGACTTACAAAAGTGAACAGAG 57.032 39.130 0.00 0.00 46.09 3.35
3566 6080 4.809426 ACGACTTACAAAAGTGAACAGAGG 59.191 41.667 0.00 0.00 46.09 3.69
3567 6081 4.211374 CGACTTACAAAAGTGAACAGAGGG 59.789 45.833 0.00 0.00 46.09 4.30
3568 6082 5.365619 GACTTACAAAAGTGAACAGAGGGA 58.634 41.667 0.00 0.00 46.09 4.20
3569 6083 5.368989 ACTTACAAAAGTGAACAGAGGGAG 58.631 41.667 0.00 0.00 44.40 4.30
3606 6120 1.264288 GCGACAAAAGTGGAACAGAGG 59.736 52.381 0.00 0.00 41.80 3.69
3607 6121 1.873591 CGACAAAAGTGGAACAGAGGG 59.126 52.381 0.00 0.00 41.80 4.30
3608 6122 2.484770 CGACAAAAGTGGAACAGAGGGA 60.485 50.000 0.00 0.00 41.80 4.20
3610 6124 2.509964 ACAAAAGTGGAACAGAGGGAGT 59.490 45.455 0.00 0.00 41.80 3.85
3612 6126 4.202367 ACAAAAGTGGAACAGAGGGAGTAG 60.202 45.833 0.00 0.00 41.80 2.57
3613 6127 3.261818 AAGTGGAACAGAGGGAGTAGT 57.738 47.619 0.00 0.00 41.80 2.73
3615 6129 3.166679 AGTGGAACAGAGGGAGTAGTTC 58.833 50.000 0.00 0.00 41.80 3.01
3616 6130 2.094649 GTGGAACAGAGGGAGTAGTTCG 60.095 54.545 0.00 0.00 41.80 3.95
3617 6131 1.477295 GGAACAGAGGGAGTAGTTCGG 59.523 57.143 0.00 0.00 40.83 4.30
3618 6132 2.444421 GAACAGAGGGAGTAGTTCGGA 58.556 52.381 0.00 0.00 32.17 4.55
3619 6133 2.830651 ACAGAGGGAGTAGTTCGGAT 57.169 50.000 0.00 0.00 0.00 4.18
3624 6138 4.401519 CAGAGGGAGTAGTTCGGATTACAA 59.598 45.833 0.00 0.00 0.00 2.41
3625 6139 5.021458 AGAGGGAGTAGTTCGGATTACAAA 58.979 41.667 0.00 0.00 0.00 2.83
3627 6141 5.731591 AGGGAGTAGTTCGGATTACAAAAG 58.268 41.667 0.00 0.00 0.00 2.27
3628 6142 4.331992 GGGAGTAGTTCGGATTACAAAAGC 59.668 45.833 0.00 0.00 0.00 3.51
3629 6143 5.176592 GGAGTAGTTCGGATTACAAAAGCT 58.823 41.667 0.00 0.00 0.00 3.74
3665 6244 9.593134 TTTAATGGTATTTTTGAATTCCGGATG 57.407 29.630 4.15 0.00 0.00 3.51
3666 6245 6.790232 ATGGTATTTTTGAATTCCGGATGT 57.210 33.333 4.15 0.00 0.00 3.06
3667 6246 6.597832 TGGTATTTTTGAATTCCGGATGTT 57.402 33.333 4.15 3.14 0.00 2.71
3668 6247 6.998802 TGGTATTTTTGAATTCCGGATGTTT 58.001 32.000 4.15 0.00 0.00 2.83
3669 6248 8.123639 TGGTATTTTTGAATTCCGGATGTTTA 57.876 30.769 4.15 0.00 0.00 2.01
3670 6249 8.030106 TGGTATTTTTGAATTCCGGATGTTTAC 58.970 33.333 4.15 2.35 0.00 2.01
3671 6250 8.248253 GGTATTTTTGAATTCCGGATGTTTACT 58.752 33.333 4.15 0.00 0.00 2.24
3672 6251 9.634163 GTATTTTTGAATTCCGGATGTTTACTT 57.366 29.630 4.15 0.00 0.00 2.24
3674 6253 9.855021 ATTTTTGAATTCCGGATGTTTACTTAG 57.145 29.630 4.15 0.00 0.00 2.18
3675 6254 7.989416 TTTGAATTCCGGATGTTTACTTAGT 57.011 32.000 4.15 0.00 0.00 2.24
3676 6255 6.978343 TGAATTCCGGATGTTTACTTAGTG 57.022 37.500 4.15 0.00 0.00 2.74
3677 6256 6.469410 TGAATTCCGGATGTTTACTTAGTGT 58.531 36.000 4.15 0.00 0.00 3.55
3678 6257 6.938030 TGAATTCCGGATGTTTACTTAGTGTT 59.062 34.615 4.15 0.00 0.00 3.32
3679 6258 7.446013 TGAATTCCGGATGTTTACTTAGTGTTT 59.554 33.333 4.15 0.00 0.00 2.83
3680 6259 7.754851 ATTCCGGATGTTTACTTAGTGTTTT 57.245 32.000 4.15 0.00 0.00 2.43
3681 6260 6.548441 TCCGGATGTTTACTTAGTGTTTTG 57.452 37.500 0.00 0.00 0.00 2.44
3682 6261 5.470777 TCCGGATGTTTACTTAGTGTTTTGG 59.529 40.000 0.00 0.00 0.00 3.28
3683 6262 5.470777 CCGGATGTTTACTTAGTGTTTTGGA 59.529 40.000 0.00 0.00 0.00 3.53
3684 6263 6.150474 CCGGATGTTTACTTAGTGTTTTGGAT 59.850 38.462 0.00 0.00 0.00 3.41
3685 6264 7.334921 CCGGATGTTTACTTAGTGTTTTGGATA 59.665 37.037 0.00 0.00 0.00 2.59
3686 6265 8.723311 CGGATGTTTACTTAGTGTTTTGGATAA 58.277 33.333 0.00 0.00 0.00 1.75
3694 6273 8.934023 ACTTAGTGTTTTGGATAAGAATTGGA 57.066 30.769 0.00 0.00 0.00 3.53
3695 6274 9.362151 ACTTAGTGTTTTGGATAAGAATTGGAA 57.638 29.630 0.00 0.00 0.00 3.53
3696 6275 9.846248 CTTAGTGTTTTGGATAAGAATTGGAAG 57.154 33.333 0.00 0.00 0.00 3.46
3697 6276 7.232118 AGTGTTTTGGATAAGAATTGGAAGG 57.768 36.000 0.00 0.00 0.00 3.46
3698 6277 6.782494 AGTGTTTTGGATAAGAATTGGAAGGT 59.218 34.615 0.00 0.00 0.00 3.50
3699 6278 6.868339 GTGTTTTGGATAAGAATTGGAAGGTG 59.132 38.462 0.00 0.00 0.00 4.00
3700 6279 6.780031 TGTTTTGGATAAGAATTGGAAGGTGA 59.220 34.615 0.00 0.00 0.00 4.02
3701 6280 7.454380 TGTTTTGGATAAGAATTGGAAGGTGAT 59.546 33.333 0.00 0.00 0.00 3.06
3702 6281 7.645058 TTTGGATAAGAATTGGAAGGTGATC 57.355 36.000 0.00 0.00 0.00 2.92
3703 6282 6.581388 TGGATAAGAATTGGAAGGTGATCT 57.419 37.500 0.00 0.00 0.00 2.75
3704 6283 6.359804 TGGATAAGAATTGGAAGGTGATCTG 58.640 40.000 0.00 0.00 0.00 2.90
3705 6284 5.767168 GGATAAGAATTGGAAGGTGATCTGG 59.233 44.000 0.00 0.00 0.00 3.86
3706 6285 4.664688 AAGAATTGGAAGGTGATCTGGT 57.335 40.909 0.00 0.00 0.00 4.00
3707 6286 4.664688 AGAATTGGAAGGTGATCTGGTT 57.335 40.909 0.00 0.00 0.00 3.67
3708 6287 5.779241 AGAATTGGAAGGTGATCTGGTTA 57.221 39.130 0.00 0.00 0.00 2.85
3709 6288 6.332976 AGAATTGGAAGGTGATCTGGTTAT 57.667 37.500 0.00 0.00 0.00 1.89
3710 6289 6.735556 AGAATTGGAAGGTGATCTGGTTATT 58.264 36.000 0.00 0.00 0.00 1.40
3711 6290 6.604795 AGAATTGGAAGGTGATCTGGTTATTG 59.395 38.462 0.00 0.00 0.00 1.90
3712 6291 5.512942 TTGGAAGGTGATCTGGTTATTGA 57.487 39.130 0.00 0.00 0.00 2.57
3713 6292 5.512942 TGGAAGGTGATCTGGTTATTGAA 57.487 39.130 0.00 0.00 0.00 2.69
3714 6293 6.078456 TGGAAGGTGATCTGGTTATTGAAT 57.922 37.500 0.00 0.00 0.00 2.57
3715 6294 7.206789 TGGAAGGTGATCTGGTTATTGAATA 57.793 36.000 0.00 0.00 0.00 1.75
3716 6295 7.282585 TGGAAGGTGATCTGGTTATTGAATAG 58.717 38.462 0.00 0.00 0.00 1.73
3717 6296 7.092444 TGGAAGGTGATCTGGTTATTGAATAGT 60.092 37.037 0.00 0.00 0.00 2.12
3718 6297 7.775561 GGAAGGTGATCTGGTTATTGAATAGTT 59.224 37.037 0.00 0.00 0.00 2.24
3719 6298 9.178758 GAAGGTGATCTGGTTATTGAATAGTTT 57.821 33.333 0.00 0.00 0.00 2.66
3720 6299 9.533831 AAGGTGATCTGGTTATTGAATAGTTTT 57.466 29.630 0.00 0.00 0.00 2.43
3721 6300 9.533831 AGGTGATCTGGTTATTGAATAGTTTTT 57.466 29.630 0.00 0.00 0.00 1.94
3880 6752 3.795688 TGCTCCCTTTTCTTCTGTCAT 57.204 42.857 0.00 0.00 0.00 3.06
3927 6805 1.069765 CGTGTTGTGGAGTGGAGCT 59.930 57.895 0.00 0.00 0.00 4.09
3952 6830 4.836125 TCAGTTTTGTTCTCCTGCATTC 57.164 40.909 0.00 0.00 0.00 2.67
3970 6848 2.107950 TCCCAAATAGGAACTGCGTG 57.892 50.000 0.00 0.00 41.52 5.34
3971 6849 1.094785 CCCAAATAGGAACTGCGTGG 58.905 55.000 0.00 0.00 41.52 4.94
3975 6853 2.673368 CAAATAGGAACTGCGTGGAGTC 59.327 50.000 0.00 0.00 41.52 3.36
3976 6854 0.824759 ATAGGAACTGCGTGGAGTCC 59.175 55.000 0.73 0.73 41.52 3.85
3984 6862 4.530857 CGTGGAGTCCGCCCCATC 62.531 72.222 17.13 0.00 34.58 3.51
3985 6863 3.399181 GTGGAGTCCGCCCCATCA 61.399 66.667 12.00 0.00 34.58 3.07
3987 6865 2.190578 GGAGTCCGCCCCATCAAG 59.809 66.667 0.00 0.00 0.00 3.02
3990 6868 2.198304 GAGTCCGCCCCATCAAGGTT 62.198 60.000 0.00 0.00 34.66 3.50
3991 6869 2.046285 GTCCGCCCCATCAAGGTTG 61.046 63.158 0.00 0.00 34.66 3.77
3992 6870 2.755469 CCGCCCCATCAAGGTTGG 60.755 66.667 0.00 0.00 34.66 3.77
4003 6881 4.770010 CCATCAAGGTTGGGTTAAGCTAAA 59.230 41.667 4.94 0.00 45.88 1.85
4004 6882 5.422012 CCATCAAGGTTGGGTTAAGCTAAAT 59.578 40.000 4.94 0.00 45.88 1.40
4005 6883 6.605594 CCATCAAGGTTGGGTTAAGCTAAATA 59.394 38.462 4.94 0.00 45.88 1.40
4006 6884 7.416326 CCATCAAGGTTGGGTTAAGCTAAATAC 60.416 40.741 4.94 0.00 45.88 1.89
4008 6886 4.520179 AGGTTGGGTTAAGCTAAATACGG 58.480 43.478 4.94 0.00 44.84 4.02
4009 6887 4.225717 AGGTTGGGTTAAGCTAAATACGGA 59.774 41.667 4.94 0.00 44.84 4.69
4010 6888 4.333649 GGTTGGGTTAAGCTAAATACGGAC 59.666 45.833 4.94 0.00 34.01 4.79
4033 12590 4.695455 CGGTTCTTACTCATTTGATGGTGT 59.305 41.667 0.00 0.00 0.00 4.16
4067 12624 3.871006 GGATGATCTTACGTGATGTTGCA 59.129 43.478 0.00 0.00 0.00 4.08
4068 12625 4.512944 GGATGATCTTACGTGATGTTGCAT 59.487 41.667 0.00 0.00 0.00 3.96
4069 12626 5.008019 GGATGATCTTACGTGATGTTGCATT 59.992 40.000 0.00 0.00 0.00 3.56
4070 12627 5.220557 TGATCTTACGTGATGTTGCATTG 57.779 39.130 0.00 0.00 0.00 2.82
4071 12628 4.694982 TGATCTTACGTGATGTTGCATTGT 59.305 37.500 0.00 0.00 0.00 2.71
4073 12630 4.782156 TCTTACGTGATGTTGCATTGTTG 58.218 39.130 0.00 0.00 0.00 3.33
4109 12666 0.107606 CTCATCTTGCAGCAGAGCCT 60.108 55.000 0.00 0.00 0.00 4.58
4137 12694 1.126488 TGCAGAGATGCCCTAGAAGG 58.874 55.000 0.00 0.00 34.30 3.46
4171 12728 4.702131 GCATGTATGGAAGGACTGTCTTTT 59.298 41.667 6.61 2.56 0.00 2.27
4184 12741 5.746721 GGACTGTCTTTTGCAAATTAACGTT 59.253 36.000 13.65 5.88 0.00 3.99
4205 12762 2.752903 TCTGATCGTCCAATCGAAGTCA 59.247 45.455 0.00 0.00 42.99 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 130 5.047519 AGCTCCATTTTCCTCAAGATTTGTG 60.048 40.000 0.00 0.00 0.00 3.33
339 341 1.748879 CCCGGTTCATGCCACGAAT 60.749 57.895 0.00 0.00 0.00 3.34
391 393 0.670162 CATCATTGATCCCGGTTGGC 59.330 55.000 0.00 0.00 0.00 4.52
402 404 1.144298 CTCCTGGCCCATCATCATTGA 59.856 52.381 0.00 0.00 36.00 2.57
408 410 2.769621 TCGCTCCTGGCCCATCAT 60.770 61.111 0.00 0.00 37.74 2.45
430 432 1.616091 GGGACGAACCGGGACCAATA 61.616 60.000 6.32 0.00 40.11 1.90
470 472 1.189524 ATTGGTCCCGGTTCGTCTGA 61.190 55.000 0.00 0.00 0.00 3.27
544 549 3.397849 GTTCAGTTTAGAACCGGGACT 57.602 47.619 6.32 7.19 41.52 3.85
556 561 2.290705 CCCATTAGTCCCGGTTCAGTTT 60.291 50.000 0.00 0.00 0.00 2.66
586 591 2.695147 CAAAAGAGGCTTTGGTTCAGGT 59.305 45.455 0.00 0.00 33.48 4.00
601 606 0.850100 TGGAGGAGGCCAACAAAAGA 59.150 50.000 5.01 0.00 34.31 2.52
602 607 0.961753 GTGGAGGAGGCCAACAAAAG 59.038 55.000 5.01 0.00 40.20 2.27
603 608 0.260230 TGTGGAGGAGGCCAACAAAA 59.740 50.000 5.01 0.00 40.20 2.44
607 612 2.352805 CCTGTGGAGGAGGCCAAC 59.647 66.667 5.01 0.00 42.93 3.77
630 635 1.103803 CGGGATCTCCTTCGAAGACA 58.896 55.000 26.61 11.31 34.32 3.41
1039 1076 2.235155 TGTAGTAGAATCCAGCCGCAAA 59.765 45.455 0.00 0.00 0.00 3.68
1061 1104 0.472734 CCTAGGCTGGACATAGGGCT 60.473 60.000 0.00 0.00 39.21 5.19
1418 1467 2.033141 CACCCACACCCTCTGCAG 59.967 66.667 7.63 7.63 0.00 4.41
1623 1680 8.977412 AGACCATAATAAACCAACCAATTAAGG 58.023 33.333 0.00 0.00 31.90 2.69
1638 1695 9.952030 TGAGTAATTGTTCACAGACCATAATAA 57.048 29.630 0.00 0.00 0.00 1.40
2558 5017 5.461032 TCAACGAATTTAACCAAAGCCAT 57.539 34.783 0.00 0.00 0.00 4.40
2566 5025 7.900864 CCAAAAACAAGTTCAACGAATTTAACC 59.099 33.333 0.00 0.00 0.00 2.85
2575 5034 1.586123 CGCCCAAAAACAAGTTCAACG 59.414 47.619 0.00 0.00 0.00 4.10
2585 5044 0.891904 TACTCCCTGCGCCCAAAAAC 60.892 55.000 4.18 0.00 0.00 2.43
2593 5052 2.159085 AGATAACAACTACTCCCTGCGC 60.159 50.000 0.00 0.00 0.00 6.09
2596 5055 6.037786 TGTGAAGATAACAACTACTCCCTG 57.962 41.667 0.00 0.00 0.00 4.45
2634 5093 5.919755 TCACTAACAAACACACATGGTCTA 58.080 37.500 0.00 0.00 0.00 2.59
2651 5110 8.862325 ATGGACATGTATTCAGTTTTCACTAA 57.138 30.769 0.00 0.00 0.00 2.24
2657 5116 5.496556 TCCGATGGACATGTATTCAGTTTT 58.503 37.500 0.00 0.00 0.00 2.43
2922 5383 3.366679 CCAACTCAGCATTTACAGCTTGG 60.367 47.826 0.00 0.00 41.14 3.61
3005 5466 2.045926 ACATGGGTGAGCTTCGCC 60.046 61.111 0.00 7.09 46.03 5.54
3006 5467 1.078848 AGACATGGGTGAGCTTCGC 60.079 57.895 0.00 0.00 0.00 4.70
3007 5468 0.247460 TCAGACATGGGTGAGCTTCG 59.753 55.000 0.00 0.00 0.00 3.79
3008 5469 2.706339 ATCAGACATGGGTGAGCTTC 57.294 50.000 0.00 0.00 0.00 3.86
3009 5470 4.411540 AGAATATCAGACATGGGTGAGCTT 59.588 41.667 0.00 0.00 0.00 3.74
3010 5471 3.972638 AGAATATCAGACATGGGTGAGCT 59.027 43.478 0.00 0.00 0.00 4.09
3011 5472 4.348863 AGAATATCAGACATGGGTGAGC 57.651 45.455 0.00 0.00 0.00 4.26
3012 5473 6.041865 AGAGAAGAATATCAGACATGGGTGAG 59.958 42.308 0.00 0.00 0.00 3.51
3013 5474 5.901853 AGAGAAGAATATCAGACATGGGTGA 59.098 40.000 0.00 0.00 0.00 4.02
3014 5475 5.990386 CAGAGAAGAATATCAGACATGGGTG 59.010 44.000 0.00 0.00 0.00 4.61
3015 5476 5.901853 TCAGAGAAGAATATCAGACATGGGT 59.098 40.000 0.00 0.00 0.00 4.51
3016 5477 6.416631 TCAGAGAAGAATATCAGACATGGG 57.583 41.667 0.00 0.00 0.00 4.00
3017 5478 8.905660 AATTCAGAGAAGAATATCAGACATGG 57.094 34.615 0.00 0.00 37.24 3.66
3049 5510 9.283768 TGAGCTTCAGATATACAAGAAAAACAA 57.716 29.630 0.00 0.00 0.00 2.83
3050 5511 8.846943 TGAGCTTCAGATATACAAGAAAAACA 57.153 30.769 0.00 0.00 0.00 2.83
3091 5552 9.275398 ACAACATAATACGAAAGGTCTTTACAA 57.725 29.630 0.00 0.00 32.11 2.41
3092 5553 8.836268 ACAACATAATACGAAAGGTCTTTACA 57.164 30.769 0.00 0.00 32.11 2.41
3095 5556 9.498176 AAGTACAACATAATACGAAAGGTCTTT 57.502 29.630 0.00 0.00 35.14 2.52
3096 5557 8.932791 CAAGTACAACATAATACGAAAGGTCTT 58.067 33.333 0.00 0.00 0.00 3.01
3097 5558 8.092687 ACAAGTACAACATAATACGAAAGGTCT 58.907 33.333 0.00 0.00 0.00 3.85
3098 5559 8.248117 ACAAGTACAACATAATACGAAAGGTC 57.752 34.615 0.00 0.00 0.00 3.85
3099 5560 9.880157 ATACAAGTACAACATAATACGAAAGGT 57.120 29.630 0.00 0.00 0.00 3.50
3116 5577 9.651718 GCAGTTTGATTTGCTATATACAAGTAC 57.348 33.333 0.00 0.00 37.35 2.73
3117 5578 9.389755 TGCAGTTTGATTTGCTATATACAAGTA 57.610 29.630 0.00 0.00 40.87 2.24
3118 5579 8.279970 TGCAGTTTGATTTGCTATATACAAGT 57.720 30.769 0.00 0.00 40.87 3.16
3119 5580 9.571810 TTTGCAGTTTGATTTGCTATATACAAG 57.428 29.630 0.00 0.00 40.87 3.16
3121 5582 9.518906 CATTTGCAGTTTGATTTGCTATATACA 57.481 29.630 0.00 0.00 40.87 2.29
3122 5583 8.482429 GCATTTGCAGTTTGATTTGCTATATAC 58.518 33.333 0.00 0.00 40.87 1.47
3123 5584 8.415553 AGCATTTGCAGTTTGATTTGCTATATA 58.584 29.630 5.20 0.00 45.16 0.86
3124 5585 7.223971 CAGCATTTGCAGTTTGATTTGCTATAT 59.776 33.333 5.20 0.00 45.16 0.86
3125 5586 6.532302 CAGCATTTGCAGTTTGATTTGCTATA 59.468 34.615 5.20 0.00 45.16 1.31
3126 5587 5.350365 CAGCATTTGCAGTTTGATTTGCTAT 59.650 36.000 5.20 0.00 45.16 2.97
3127 5588 4.687018 CAGCATTTGCAGTTTGATTTGCTA 59.313 37.500 5.20 0.00 45.16 3.49
3128 5589 3.496884 CAGCATTTGCAGTTTGATTTGCT 59.503 39.130 5.20 0.00 45.16 3.91
3129 5590 3.495377 TCAGCATTTGCAGTTTGATTTGC 59.505 39.130 5.20 0.00 45.16 3.68
3130 5591 4.748102 AGTCAGCATTTGCAGTTTGATTTG 59.252 37.500 5.20 0.00 45.16 2.32
3131 5592 4.952460 AGTCAGCATTTGCAGTTTGATTT 58.048 34.783 5.20 0.00 45.16 2.17
3132 5593 4.595762 AGTCAGCATTTGCAGTTTGATT 57.404 36.364 5.20 0.00 45.16 2.57
3133 5594 4.304110 CAAGTCAGCATTTGCAGTTTGAT 58.696 39.130 5.20 0.00 45.16 2.57
3134 5595 3.491276 CCAAGTCAGCATTTGCAGTTTGA 60.491 43.478 5.20 0.00 45.16 2.69
3135 5596 2.798283 CCAAGTCAGCATTTGCAGTTTG 59.202 45.455 5.20 6.64 45.16 2.93
3136 5597 2.694628 TCCAAGTCAGCATTTGCAGTTT 59.305 40.909 5.20 0.00 45.16 2.66
3137 5598 2.309613 TCCAAGTCAGCATTTGCAGTT 58.690 42.857 5.20 0.00 45.16 3.16
3138 5599 1.985473 TCCAAGTCAGCATTTGCAGT 58.015 45.000 5.20 0.00 45.16 4.40
3139 5600 3.250744 CATTCCAAGTCAGCATTTGCAG 58.749 45.455 5.20 0.00 45.16 4.41
3140 5601 2.629137 ACATTCCAAGTCAGCATTTGCA 59.371 40.909 5.20 0.00 45.16 4.08
3141 5602 3.308438 ACATTCCAAGTCAGCATTTGC 57.692 42.857 0.00 0.00 42.49 3.68
3142 5603 3.991773 CCAACATTCCAAGTCAGCATTTG 59.008 43.478 0.00 0.00 0.00 2.32
3143 5604 3.642848 ACCAACATTCCAAGTCAGCATTT 59.357 39.130 0.00 0.00 0.00 2.32
3144 5605 3.233507 ACCAACATTCCAAGTCAGCATT 58.766 40.909 0.00 0.00 0.00 3.56
3145 5606 2.880443 ACCAACATTCCAAGTCAGCAT 58.120 42.857 0.00 0.00 0.00 3.79
3146 5607 2.363306 ACCAACATTCCAAGTCAGCA 57.637 45.000 0.00 0.00 0.00 4.41
3147 5608 3.733443 AAACCAACATTCCAAGTCAGC 57.267 42.857 0.00 0.00 0.00 4.26
3148 5609 5.261209 TCAAAACCAACATTCCAAGTCAG 57.739 39.130 0.00 0.00 0.00 3.51
3149 5610 5.867903 ATCAAAACCAACATTCCAAGTCA 57.132 34.783 0.00 0.00 0.00 3.41
3150 5611 7.552458 AAAATCAAAACCAACATTCCAAGTC 57.448 32.000 0.00 0.00 0.00 3.01
3151 5612 7.392953 ACAAAAATCAAAACCAACATTCCAAGT 59.607 29.630 0.00 0.00 0.00 3.16
3152 5613 7.697291 CACAAAAATCAAAACCAACATTCCAAG 59.303 33.333 0.00 0.00 0.00 3.61
3153 5614 7.533426 CACAAAAATCAAAACCAACATTCCAA 58.467 30.769 0.00 0.00 0.00 3.53
3154 5615 6.404074 GCACAAAAATCAAAACCAACATTCCA 60.404 34.615 0.00 0.00 0.00 3.53
3155 5616 5.970612 GCACAAAAATCAAAACCAACATTCC 59.029 36.000 0.00 0.00 0.00 3.01
3156 5617 6.549952 TGCACAAAAATCAAAACCAACATTC 58.450 32.000 0.00 0.00 0.00 2.67
3157 5618 6.506500 TGCACAAAAATCAAAACCAACATT 57.493 29.167 0.00 0.00 0.00 2.71
3158 5619 6.696441 ATGCACAAAAATCAAAACCAACAT 57.304 29.167 0.00 0.00 0.00 2.71
3159 5620 7.615582 TTATGCACAAAAATCAAAACCAACA 57.384 28.000 0.00 0.00 0.00 3.33
3162 5623 9.553064 AGTTATTATGCACAAAAATCAAAACCA 57.447 25.926 0.00 0.00 0.00 3.67
3168 5629 9.844790 CTGAGAAGTTATTATGCACAAAAATCA 57.155 29.630 0.00 0.00 0.00 2.57
3172 5633 8.390354 CGATCTGAGAAGTTATTATGCACAAAA 58.610 33.333 0.00 0.00 0.00 2.44
3173 5634 7.549134 ACGATCTGAGAAGTTATTATGCACAAA 59.451 33.333 0.00 0.00 0.00 2.83
3174 5635 7.010460 CACGATCTGAGAAGTTATTATGCACAA 59.990 37.037 0.00 0.00 0.00 3.33
3175 5636 6.476706 CACGATCTGAGAAGTTATTATGCACA 59.523 38.462 0.00 0.00 0.00 4.57
3176 5637 6.074088 CCACGATCTGAGAAGTTATTATGCAC 60.074 42.308 0.00 0.00 0.00 4.57
3177 5638 5.985530 CCACGATCTGAGAAGTTATTATGCA 59.014 40.000 0.00 0.00 0.00 3.96
3178 5639 5.986135 ACCACGATCTGAGAAGTTATTATGC 59.014 40.000 0.00 0.00 0.00 3.14
3179 5640 8.568794 TCTACCACGATCTGAGAAGTTATTATG 58.431 37.037 0.00 0.00 0.00 1.90
3180 5641 8.693120 TCTACCACGATCTGAGAAGTTATTAT 57.307 34.615 0.00 0.00 0.00 1.28
3181 5642 8.693120 ATCTACCACGATCTGAGAAGTTATTA 57.307 34.615 0.00 0.00 0.00 0.98
3182 5643 7.589958 ATCTACCACGATCTGAGAAGTTATT 57.410 36.000 0.00 0.00 0.00 1.40
3183 5644 7.589958 AATCTACCACGATCTGAGAAGTTAT 57.410 36.000 0.00 0.00 0.00 1.89
3184 5645 7.406031 AAATCTACCACGATCTGAGAAGTTA 57.594 36.000 0.00 0.00 0.00 2.24
3185 5646 5.923733 AATCTACCACGATCTGAGAAGTT 57.076 39.130 0.00 0.00 0.00 2.66
3186 5647 5.163499 GGAAATCTACCACGATCTGAGAAGT 60.163 44.000 0.00 0.00 0.00 3.01
3187 5648 5.163509 TGGAAATCTACCACGATCTGAGAAG 60.164 44.000 0.00 0.00 32.03 2.85
3188 5649 4.709886 TGGAAATCTACCACGATCTGAGAA 59.290 41.667 0.00 0.00 32.03 2.87
3189 5650 4.278310 TGGAAATCTACCACGATCTGAGA 58.722 43.478 0.00 0.00 32.03 3.27
3190 5651 4.655762 TGGAAATCTACCACGATCTGAG 57.344 45.455 0.00 0.00 32.03 3.35
3191 5652 4.039245 GGATGGAAATCTACCACGATCTGA 59.961 45.833 0.00 0.00 40.36 3.27
3192 5653 4.310769 GGATGGAAATCTACCACGATCTG 58.689 47.826 0.00 0.00 40.36 2.90
3193 5654 3.325135 GGGATGGAAATCTACCACGATCT 59.675 47.826 0.00 0.00 40.36 2.75
3194 5655 3.325135 AGGGATGGAAATCTACCACGATC 59.675 47.826 0.00 0.00 40.36 3.69
3195 5656 3.071602 CAGGGATGGAAATCTACCACGAT 59.928 47.826 0.00 0.00 40.36 3.73
3196 5657 2.434336 CAGGGATGGAAATCTACCACGA 59.566 50.000 0.00 0.00 40.36 4.35
3197 5658 2.485479 CCAGGGATGGAAATCTACCACG 60.485 54.545 0.00 0.00 40.36 4.94
3198 5659 2.749800 GCCAGGGATGGAAATCTACCAC 60.750 54.545 0.00 0.00 40.36 4.16
3199 5660 1.494721 GCCAGGGATGGAAATCTACCA 59.505 52.381 0.00 0.00 41.83 3.25
3200 5661 1.543429 CGCCAGGGATGGAAATCTACC 60.543 57.143 0.00 0.00 0.00 3.18
3201 5662 1.543429 CCGCCAGGGATGGAAATCTAC 60.543 57.143 0.00 0.00 38.47 2.59
3202 5663 0.764890 CCGCCAGGGATGGAAATCTA 59.235 55.000 0.00 0.00 38.47 1.98
3203 5664 0.988145 TCCGCCAGGGATGGAAATCT 60.988 55.000 0.00 0.00 40.94 2.40
3204 5665 0.536006 CTCCGCCAGGGATGGAAATC 60.536 60.000 0.00 0.00 46.04 2.17
3205 5666 0.988145 TCTCCGCCAGGGATGGAAAT 60.988 55.000 0.00 0.00 46.04 2.17
3206 5667 0.988145 ATCTCCGCCAGGGATGGAAA 60.988 55.000 0.00 0.00 46.04 3.13
3207 5668 1.384502 ATCTCCGCCAGGGATGGAA 60.385 57.895 0.00 0.00 46.04 3.53
3375 5881 7.517614 TTTGGTCATAATTACTTGCAACAGA 57.482 32.000 0.00 0.00 0.00 3.41
3420 5926 0.105039 GACCGAGTGGCCCAGATAAG 59.895 60.000 0.00 0.00 39.70 1.73
3433 5939 2.526304 TGAACTTTGGACAGACCGAG 57.474 50.000 0.00 0.00 42.61 4.63
3464 5978 6.664816 TCTTATAAAAGTGAACGGAGGGAGTA 59.335 38.462 0.00 0.00 34.13 2.59
3465 5979 5.482878 TCTTATAAAAGTGAACGGAGGGAGT 59.517 40.000 0.00 0.00 34.13 3.85
3466 5980 5.811100 GTCTTATAAAAGTGAACGGAGGGAG 59.189 44.000 0.00 0.00 34.13 4.30
3467 5981 5.337813 GGTCTTATAAAAGTGAACGGAGGGA 60.338 44.000 0.00 0.00 34.13 4.20
3468 5982 4.874396 GGTCTTATAAAAGTGAACGGAGGG 59.126 45.833 0.00 0.00 34.13 4.30
3469 5983 5.731591 AGGTCTTATAAAAGTGAACGGAGG 58.268 41.667 0.00 0.00 34.13 4.30
3470 5984 7.668525 AAAGGTCTTATAAAAGTGAACGGAG 57.331 36.000 0.00 0.00 34.13 4.63
3471 5985 9.211485 CTAAAAGGTCTTATAAAAGTGAACGGA 57.789 33.333 0.00 0.00 34.13 4.69
3472 5986 9.211485 TCTAAAAGGTCTTATAAAAGTGAACGG 57.789 33.333 0.00 0.00 34.13 4.44
3488 6002 9.569167 GGTGCTATTTTAAATGTCTAAAAGGTC 57.431 33.333 0.00 0.00 34.97 3.85
3489 6003 9.309224 AGGTGCTATTTTAAATGTCTAAAAGGT 57.691 29.630 0.00 0.00 34.97 3.50
3497 6011 9.908152 ACTGTTTTAGGTGCTATTTTAAATGTC 57.092 29.630 0.00 0.00 0.00 3.06
3508 6022 8.079809 GCTGAAATTAAACTGTTTTAGGTGCTA 58.920 33.333 11.48 0.00 0.00 3.49
3509 6023 6.923508 GCTGAAATTAAACTGTTTTAGGTGCT 59.076 34.615 11.48 0.00 0.00 4.40
3510 6024 6.923508 AGCTGAAATTAAACTGTTTTAGGTGC 59.076 34.615 11.48 7.86 32.66 5.01
3511 6025 7.920682 ACAGCTGAAATTAAACTGTTTTAGGTG 59.079 33.333 23.35 15.81 46.19 4.00
3512 6026 8.007405 ACAGCTGAAATTAAACTGTTTTAGGT 57.993 30.769 23.35 4.25 38.38 3.08
3513 6027 7.595130 GGACAGCTGAAATTAAACTGTTTTAGG 59.405 37.037 23.35 0.00 41.45 2.69
3514 6028 8.352942 AGGACAGCTGAAATTAAACTGTTTTAG 58.647 33.333 23.35 2.88 41.45 1.85
3515 6029 8.232913 AGGACAGCTGAAATTAAACTGTTTTA 57.767 30.769 23.35 2.46 41.45 1.52
3516 6030 7.112452 AGGACAGCTGAAATTAAACTGTTTT 57.888 32.000 23.35 0.00 41.45 2.43
3517 6031 6.715347 AGGACAGCTGAAATTAAACTGTTT 57.285 33.333 23.35 10.98 41.45 2.83
3518 6032 7.817418 TTAGGACAGCTGAAATTAAACTGTT 57.183 32.000 23.35 0.00 41.45 3.16
3519 6033 7.519970 CGTTTAGGACAGCTGAAATTAAACTGT 60.520 37.037 23.35 0.00 43.93 3.55
3520 6034 6.797033 CGTTTAGGACAGCTGAAATTAAACTG 59.203 38.462 23.35 17.47 31.05 3.16
3521 6035 6.708949 TCGTTTAGGACAGCTGAAATTAAACT 59.291 34.615 23.35 8.35 31.05 2.66
3522 6036 6.795593 GTCGTTTAGGACAGCTGAAATTAAAC 59.204 38.462 23.35 22.91 36.91 2.01
3523 6037 6.708949 AGTCGTTTAGGACAGCTGAAATTAAA 59.291 34.615 23.35 15.21 39.42 1.52
3524 6038 6.228258 AGTCGTTTAGGACAGCTGAAATTAA 58.772 36.000 23.35 10.25 39.42 1.40
3525 6039 5.790593 AGTCGTTTAGGACAGCTGAAATTA 58.209 37.500 23.35 4.35 39.42 1.40
3526 6040 4.642429 AGTCGTTTAGGACAGCTGAAATT 58.358 39.130 23.35 0.00 39.42 1.82
3527 6041 4.273148 AGTCGTTTAGGACAGCTGAAAT 57.727 40.909 23.35 7.64 39.42 2.17
3528 6042 3.746045 AGTCGTTTAGGACAGCTGAAA 57.254 42.857 23.35 7.52 39.42 2.69
3529 6043 3.746045 AAGTCGTTTAGGACAGCTGAA 57.254 42.857 23.35 0.04 39.42 3.02
3530 6044 3.570975 TGTAAGTCGTTTAGGACAGCTGA 59.429 43.478 23.35 0.00 39.42 4.26
3531 6045 3.909430 TGTAAGTCGTTTAGGACAGCTG 58.091 45.455 13.48 13.48 39.42 4.24
3532 6046 4.595762 TTGTAAGTCGTTTAGGACAGCT 57.404 40.909 5.50 0.00 39.42 4.24
3533 6047 5.235831 ACTTTTGTAAGTCGTTTAGGACAGC 59.764 40.000 5.50 0.00 40.60 4.40
3534 6048 6.477688 TCACTTTTGTAAGTCGTTTAGGACAG 59.522 38.462 5.50 0.00 42.67 3.51
3535 6049 6.339730 TCACTTTTGTAAGTCGTTTAGGACA 58.660 36.000 5.50 0.00 42.67 4.02
3536 6050 6.833342 TCACTTTTGTAAGTCGTTTAGGAC 57.167 37.500 0.00 0.00 42.67 3.85
3537 6051 6.817641 TGTTCACTTTTGTAAGTCGTTTAGGA 59.182 34.615 0.00 0.00 42.67 2.94
3538 6052 7.007313 TGTTCACTTTTGTAAGTCGTTTAGG 57.993 36.000 0.00 0.00 42.67 2.69
3539 6053 7.902032 TCTGTTCACTTTTGTAAGTCGTTTAG 58.098 34.615 0.00 0.00 42.67 1.85
3540 6054 7.010738 CCTCTGTTCACTTTTGTAAGTCGTTTA 59.989 37.037 0.00 0.00 42.67 2.01
3541 6055 6.183360 CCTCTGTTCACTTTTGTAAGTCGTTT 60.183 38.462 0.00 0.00 42.67 3.60
3542 6056 5.293569 CCTCTGTTCACTTTTGTAAGTCGTT 59.706 40.000 0.00 0.00 42.67 3.85
3543 6057 4.809426 CCTCTGTTCACTTTTGTAAGTCGT 59.191 41.667 0.00 0.00 42.67 4.34
3544 6058 4.211374 CCCTCTGTTCACTTTTGTAAGTCG 59.789 45.833 0.00 0.00 42.67 4.18
3545 6059 5.365619 TCCCTCTGTTCACTTTTGTAAGTC 58.634 41.667 0.00 0.00 42.67 3.01
3546 6060 5.104485 ACTCCCTCTGTTCACTTTTGTAAGT 60.104 40.000 0.00 0.00 45.40 2.24
3547 6061 5.368989 ACTCCCTCTGTTCACTTTTGTAAG 58.631 41.667 0.00 0.00 37.40 2.34
3548 6062 5.367945 ACTCCCTCTGTTCACTTTTGTAA 57.632 39.130 0.00 0.00 0.00 2.41
3549 6063 5.601313 ACTACTCCCTCTGTTCACTTTTGTA 59.399 40.000 0.00 0.00 0.00 2.41
3550 6064 3.933861 ACTCCCTCTGTTCACTTTTGT 57.066 42.857 0.00 0.00 0.00 2.83
3551 6065 4.962155 ACTACTCCCTCTGTTCACTTTTG 58.038 43.478 0.00 0.00 0.00 2.44
3552 6066 5.612351 GAACTACTCCCTCTGTTCACTTTT 58.388 41.667 0.00 0.00 38.74 2.27
3553 6067 4.262079 CGAACTACTCCCTCTGTTCACTTT 60.262 45.833 0.00 0.00 38.80 2.66
3554 6068 3.256136 CGAACTACTCCCTCTGTTCACTT 59.744 47.826 0.00 0.00 38.80 3.16
3555 6069 2.820787 CGAACTACTCCCTCTGTTCACT 59.179 50.000 0.00 0.00 38.80 3.41
3556 6070 2.094649 CCGAACTACTCCCTCTGTTCAC 60.095 54.545 0.00 0.00 38.80 3.18
3557 6071 2.168496 CCGAACTACTCCCTCTGTTCA 58.832 52.381 0.00 0.00 38.80 3.18
3558 6072 2.444421 TCCGAACTACTCCCTCTGTTC 58.556 52.381 0.00 0.00 36.44 3.18
3559 6073 2.599408 TCCGAACTACTCCCTCTGTT 57.401 50.000 0.00 0.00 0.00 3.16
3560 6074 2.830651 ATCCGAACTACTCCCTCTGT 57.169 50.000 0.00 0.00 0.00 3.41
3561 6075 2.362717 GGAATCCGAACTACTCCCTCTG 59.637 54.545 0.00 0.00 0.00 3.35
3562 6076 2.024273 TGGAATCCGAACTACTCCCTCT 60.024 50.000 0.00 0.00 0.00 3.69
3563 6077 2.385803 TGGAATCCGAACTACTCCCTC 58.614 52.381 0.00 0.00 0.00 4.30
3564 6078 2.544844 TGGAATCCGAACTACTCCCT 57.455 50.000 0.00 0.00 0.00 4.20
3565 6079 3.532542 CTTTGGAATCCGAACTACTCCC 58.467 50.000 0.00 0.00 0.00 4.30
3566 6080 2.937149 GCTTTGGAATCCGAACTACTCC 59.063 50.000 0.00 0.00 0.00 3.85
3567 6081 2.603560 CGCTTTGGAATCCGAACTACTC 59.396 50.000 0.00 0.00 0.00 2.59
3568 6082 2.232941 TCGCTTTGGAATCCGAACTACT 59.767 45.455 0.00 0.00 0.00 2.57
3569 6083 2.347755 GTCGCTTTGGAATCCGAACTAC 59.652 50.000 0.00 0.00 0.00 2.73
3606 6120 5.063564 CAGCTTTTGTAATCCGAACTACTCC 59.936 44.000 0.00 0.00 0.00 3.85
3607 6121 5.446073 GCAGCTTTTGTAATCCGAACTACTC 60.446 44.000 0.00 0.00 0.00 2.59
3608 6122 4.392138 GCAGCTTTTGTAATCCGAACTACT 59.608 41.667 0.00 0.00 0.00 2.57
3610 6124 4.575885 AGCAGCTTTTGTAATCCGAACTA 58.424 39.130 0.00 0.00 0.00 2.24
3612 6126 3.831715 AGCAGCTTTTGTAATCCGAAC 57.168 42.857 0.00 0.00 0.00 3.95
3613 6127 4.072131 AGAAGCAGCTTTTGTAATCCGAA 58.928 39.130 9.62 0.00 0.00 4.30
3615 6129 4.425577 AAGAAGCAGCTTTTGTAATCCG 57.574 40.909 9.62 0.00 0.00 4.18
3644 6161 6.597832 AACATCCGGAATTCAAAAATACCA 57.402 33.333 9.01 0.00 0.00 3.25
3669 6248 8.934023 TCCAATTCTTATCCAAAACACTAAGT 57.066 30.769 0.00 0.00 0.00 2.24
3670 6249 9.846248 CTTCCAATTCTTATCCAAAACACTAAG 57.154 33.333 0.00 0.00 0.00 2.18
3671 6250 8.802267 CCTTCCAATTCTTATCCAAAACACTAA 58.198 33.333 0.00 0.00 0.00 2.24
3672 6251 7.947890 ACCTTCCAATTCTTATCCAAAACACTA 59.052 33.333 0.00 0.00 0.00 2.74
3673 6252 6.782494 ACCTTCCAATTCTTATCCAAAACACT 59.218 34.615 0.00 0.00 0.00 3.55
3674 6253 6.868339 CACCTTCCAATTCTTATCCAAAACAC 59.132 38.462 0.00 0.00 0.00 3.32
3675 6254 6.780031 TCACCTTCCAATTCTTATCCAAAACA 59.220 34.615 0.00 0.00 0.00 2.83
3676 6255 7.227049 TCACCTTCCAATTCTTATCCAAAAC 57.773 36.000 0.00 0.00 0.00 2.43
3677 6256 7.895429 AGATCACCTTCCAATTCTTATCCAAAA 59.105 33.333 0.00 0.00 0.00 2.44
3678 6257 7.340232 CAGATCACCTTCCAATTCTTATCCAAA 59.660 37.037 0.00 0.00 0.00 3.28
3679 6258 6.830324 CAGATCACCTTCCAATTCTTATCCAA 59.170 38.462 0.00 0.00 0.00 3.53
3680 6259 6.359804 CAGATCACCTTCCAATTCTTATCCA 58.640 40.000 0.00 0.00 0.00 3.41
3681 6260 5.767168 CCAGATCACCTTCCAATTCTTATCC 59.233 44.000 0.00 0.00 0.00 2.59
3682 6261 6.360618 ACCAGATCACCTTCCAATTCTTATC 58.639 40.000 0.00 0.00 0.00 1.75
3683 6262 6.332976 ACCAGATCACCTTCCAATTCTTAT 57.667 37.500 0.00 0.00 0.00 1.73
3684 6263 5.779241 ACCAGATCACCTTCCAATTCTTA 57.221 39.130 0.00 0.00 0.00 2.10
3685 6264 4.664688 ACCAGATCACCTTCCAATTCTT 57.335 40.909 0.00 0.00 0.00 2.52
3686 6265 4.664688 AACCAGATCACCTTCCAATTCT 57.335 40.909 0.00 0.00 0.00 2.40
3687 6266 6.603201 TCAATAACCAGATCACCTTCCAATTC 59.397 38.462 0.00 0.00 0.00 2.17
3688 6267 6.493166 TCAATAACCAGATCACCTTCCAATT 58.507 36.000 0.00 0.00 0.00 2.32
3689 6268 6.078456 TCAATAACCAGATCACCTTCCAAT 57.922 37.500 0.00 0.00 0.00 3.16
3690 6269 5.512942 TCAATAACCAGATCACCTTCCAA 57.487 39.130 0.00 0.00 0.00 3.53
3691 6270 5.512942 TTCAATAACCAGATCACCTTCCA 57.487 39.130 0.00 0.00 0.00 3.53
3692 6271 7.283329 ACTATTCAATAACCAGATCACCTTCC 58.717 38.462 0.00 0.00 0.00 3.46
3693 6272 8.738645 AACTATTCAATAACCAGATCACCTTC 57.261 34.615 0.00 0.00 0.00 3.46
3694 6273 9.533831 AAAACTATTCAATAACCAGATCACCTT 57.466 29.630 0.00 0.00 0.00 3.50
3695 6274 9.533831 AAAAACTATTCAATAACCAGATCACCT 57.466 29.630 0.00 0.00 0.00 4.00
3722 6301 1.001406 CAATAACCAGCCCCGCAAAAA 59.999 47.619 0.00 0.00 0.00 1.94
3723 6302 0.605589 CAATAACCAGCCCCGCAAAA 59.394 50.000 0.00 0.00 0.00 2.44
3724 6303 0.251386 TCAATAACCAGCCCCGCAAA 60.251 50.000 0.00 0.00 0.00 3.68
3725 6304 0.251386 TTCAATAACCAGCCCCGCAA 60.251 50.000 0.00 0.00 0.00 4.85
3726 6305 0.033601 ATTCAATAACCAGCCCCGCA 60.034 50.000 0.00 0.00 0.00 5.69
3727 6306 1.880027 CTATTCAATAACCAGCCCCGC 59.120 52.381 0.00 0.00 0.00 6.13
3728 6307 3.208747 ACTATTCAATAACCAGCCCCG 57.791 47.619 0.00 0.00 0.00 5.73
3729 6308 4.532834 TCAACTATTCAATAACCAGCCCC 58.467 43.478 0.00 0.00 0.00 5.80
3730 6309 6.016777 CAGATCAACTATTCAATAACCAGCCC 60.017 42.308 0.00 0.00 0.00 5.19
3731 6310 6.016777 CCAGATCAACTATTCAATAACCAGCC 60.017 42.308 0.00 0.00 0.00 4.85
3732 6311 6.543831 ACCAGATCAACTATTCAATAACCAGC 59.456 38.462 0.00 0.00 0.00 4.85
3880 6752 5.818678 TGTACTCCCAGCTTTTCTTTCTA 57.181 39.130 0.00 0.00 0.00 2.10
3927 6805 2.612212 GCAGGAGAACAAAACTGAACGA 59.388 45.455 0.00 0.00 32.86 3.85
3952 6830 1.094785 CCACGCAGTTCCTATTTGGG 58.905 55.000 0.00 0.00 41.61 4.12
3967 6845 4.530857 GATGGGGCGGACTCCACG 62.531 72.222 0.00 0.00 35.67 4.94
3968 6846 2.876368 CTTGATGGGGCGGACTCCAC 62.876 65.000 0.00 0.00 35.67 4.02
3970 6848 2.190578 CTTGATGGGGCGGACTCC 59.809 66.667 0.00 0.00 0.00 3.85
3971 6849 2.190578 CCTTGATGGGGCGGACTC 59.809 66.667 0.00 0.00 0.00 3.36
3975 6853 2.755469 CCAACCTTGATGGGGCGG 60.755 66.667 0.00 0.00 41.11 6.13
3980 6858 2.807676 AGCTTAACCCAACCTTGATGG 58.192 47.619 0.00 0.00 42.93 3.51
3981 6859 5.975693 TTTAGCTTAACCCAACCTTGATG 57.024 39.130 0.00 0.00 0.00 3.07
3983 6861 5.644636 CGTATTTAGCTTAACCCAACCTTGA 59.355 40.000 0.00 0.00 0.00 3.02
3984 6862 5.163693 CCGTATTTAGCTTAACCCAACCTTG 60.164 44.000 0.00 0.00 0.00 3.61
3985 6863 4.945543 CCGTATTTAGCTTAACCCAACCTT 59.054 41.667 0.00 0.00 0.00 3.50
3987 6865 4.333649 GTCCGTATTTAGCTTAACCCAACC 59.666 45.833 0.00 0.00 0.00 3.77
3990 6868 3.430651 CCGTCCGTATTTAGCTTAACCCA 60.431 47.826 0.00 0.00 0.00 4.51
3991 6869 3.126073 CCGTCCGTATTTAGCTTAACCC 58.874 50.000 0.00 0.00 0.00 4.11
3992 6870 3.785486 ACCGTCCGTATTTAGCTTAACC 58.215 45.455 0.00 0.00 0.00 2.85
3994 6872 5.329035 AGAACCGTCCGTATTTAGCTTAA 57.671 39.130 0.00 0.00 0.00 1.85
3997 6875 3.881937 AAGAACCGTCCGTATTTAGCT 57.118 42.857 0.00 0.00 0.00 3.32
3998 6876 4.676546 AGTAAGAACCGTCCGTATTTAGC 58.323 43.478 0.00 0.00 0.00 3.09
4000 6878 5.895636 TGAGTAAGAACCGTCCGTATTTA 57.104 39.130 0.00 0.00 0.00 1.40
4003 6881 4.996788 AATGAGTAAGAACCGTCCGTAT 57.003 40.909 0.00 0.00 0.00 3.06
4004 6882 4.218200 TCAAATGAGTAAGAACCGTCCGTA 59.782 41.667 0.00 0.00 0.00 4.02
4005 6883 3.006110 TCAAATGAGTAAGAACCGTCCGT 59.994 43.478 0.00 0.00 0.00 4.69
4006 6884 3.581755 TCAAATGAGTAAGAACCGTCCG 58.418 45.455 0.00 0.00 0.00 4.79
4008 6886 4.935808 ACCATCAAATGAGTAAGAACCGTC 59.064 41.667 0.00 0.00 0.00 4.79
4009 6887 4.695455 CACCATCAAATGAGTAAGAACCGT 59.305 41.667 0.00 0.00 0.00 4.83
4010 6888 4.695455 ACACCATCAAATGAGTAAGAACCG 59.305 41.667 0.00 0.00 0.00 4.44
4067 12624 4.292186 AGATGACAGTACCAGCAACAAT 57.708 40.909 0.00 0.00 0.00 2.71
4068 12625 3.769739 AGATGACAGTACCAGCAACAA 57.230 42.857 0.00 0.00 0.00 2.83
4069 12626 3.324846 AGAAGATGACAGTACCAGCAACA 59.675 43.478 0.00 0.00 0.00 3.33
4070 12627 3.929610 GAGAAGATGACAGTACCAGCAAC 59.070 47.826 0.00 0.00 0.00 4.17
4071 12628 3.578282 TGAGAAGATGACAGTACCAGCAA 59.422 43.478 0.00 0.00 0.00 3.91
4073 12630 3.876274 TGAGAAGATGACAGTACCAGC 57.124 47.619 0.00 0.00 0.00 4.85
4074 12631 5.850557 AGATGAGAAGATGACAGTACCAG 57.149 43.478 0.00 0.00 0.00 4.00
4075 12632 5.625426 GCAAGATGAGAAGATGACAGTACCA 60.625 44.000 0.00 0.00 0.00 3.25
4076 12633 4.808364 GCAAGATGAGAAGATGACAGTACC 59.192 45.833 0.00 0.00 0.00 3.34
4077 12634 5.414360 TGCAAGATGAGAAGATGACAGTAC 58.586 41.667 0.00 0.00 0.00 2.73
4078 12635 5.658468 CTGCAAGATGAGAAGATGACAGTA 58.342 41.667 0.00 0.00 34.07 2.74
4079 12636 4.505808 CTGCAAGATGAGAAGATGACAGT 58.494 43.478 0.00 0.00 34.07 3.55
4080 12637 3.310227 GCTGCAAGATGAGAAGATGACAG 59.690 47.826 0.00 0.00 34.07 3.51
4137 12694 2.161410 TCCATACATGCGCACAACTTTC 59.839 45.455 14.90 0.00 0.00 2.62
4171 12728 4.142988 GGACGATCAGAACGTTAATTTGCA 60.143 41.667 7.22 0.00 43.97 4.08
4184 12741 2.752903 TGACTTCGATTGGACGATCAGA 59.247 45.455 0.00 0.00 41.82 3.27
4205 12762 5.337894 CCACTGATGTACTTGAGTCCATCTT 60.338 44.000 14.99 3.18 40.62 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.