Multiple sequence alignment - TraesCS2D01G485900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G485900 chr2D 100.000 2365 0 0 1 2365 586368878 586371242 0.000000e+00 4368
1 TraesCS2D01G485900 chr2D 79.957 928 104 49 757 1621 586359982 586360890 2.010000e-170 608
2 TraesCS2D01G485900 chr2D 93.684 190 12 0 164 353 82834079 82834268 3.850000e-73 285
3 TraesCS2D01G485900 chr2D 95.000 160 8 0 1 160 578924967 578924808 3.900000e-63 252
4 TraesCS2D01G485900 chr2D 82.781 151 15 5 1803 1947 586460245 586460390 8.880000e-25 124
5 TraesCS2D01G485900 chr2A 90.036 1646 90 23 426 2038 721449814 721451418 0.000000e+00 2063
6 TraesCS2D01G485900 chr2A 79.715 631 80 32 757 1356 721454280 721454893 1.690000e-111 412
7 TraesCS2D01G485900 chr2A 94.118 68 4 0 2081 2148 721451421 721451488 1.160000e-18 104
8 TraesCS2D01G485900 chr2B 88.919 731 45 11 891 1597 707987103 707987821 0.000000e+00 869
9 TraesCS2D01G485900 chr2B 91.949 472 24 7 1681 2148 707987834 707988295 0.000000e+00 649
10 TraesCS2D01G485900 chr2B 87.246 541 48 7 364 891 707986527 707987059 4.350000e-167 597
11 TraesCS2D01G485900 chr2B 89.873 474 27 8 1682 2148 708065249 708065708 7.280000e-165 590
12 TraesCS2D01G485900 chr2B 82.628 662 54 28 891 1517 708064404 708065039 1.610000e-146 529
13 TraesCS2D01G485900 chr2B 79.538 606 71 31 1056 1621 707978091 707978683 1.330000e-102 383
14 TraesCS2D01G485900 chr2B 90.667 225 14 4 2148 2365 729125254 729125478 2.300000e-75 292
15 TraesCS2D01G485900 chr2B 90.155 193 12 3 697 889 708064183 708064368 6.530000e-61 244
16 TraesCS2D01G485900 chr2B 79.000 300 39 15 783 1072 707977749 707978034 1.440000e-42 183
17 TraesCS2D01G485900 chr3D 97.906 191 4 0 164 354 268049412 268049602 4.870000e-87 331
18 TraesCS2D01G485900 chr3D 97.895 190 4 0 164 353 606087376 606087187 1.750000e-86 329
19 TraesCS2D01G485900 chr3D 96.053 152 6 0 1 152 508163671 508163520 5.050000e-62 248
20 TraesCS2D01G485900 chr3D 93.750 160 10 0 1 160 582737383 582737542 8.450000e-60 241
21 TraesCS2D01G485900 chr7D 90.991 222 13 4 2151 2365 329102004 329101783 2.300000e-75 292
22 TraesCS2D01G485900 chr7D 93.684 190 12 0 164 353 378710803 378710614 3.850000e-73 285
23 TraesCS2D01G485900 chr7D 93.684 190 12 0 164 353 598521030 598521219 3.850000e-73 285
24 TraesCS2D01G485900 chr7D 93.684 190 12 0 164 353 599723993 599724182 3.850000e-73 285
25 TraesCS2D01G485900 chr7D 89.908 218 20 2 137 353 452139525 452139741 1.790000e-71 279
26 TraesCS2D01G485900 chr7D 91.133 203 16 2 164 365 199047870 199047669 8.330000e-70 274
27 TraesCS2D01G485900 chr7D 95.000 160 8 0 1 160 599724114 599723955 3.900000e-63 252
28 TraesCS2D01G485900 chr7D 94.375 160 9 0 1 160 599723032 599723191 1.820000e-61 246
29 TraesCS2D01G485900 chr7B 90.583 223 14 4 2150 2365 332260709 332260487 2.970000e-74 289
30 TraesCS2D01G485900 chr7B 88.889 225 19 3 2147 2365 554122676 554122452 3.000000e-69 272
31 TraesCS2D01G485900 chr7B 87.611 226 20 6 2148 2365 489817647 489817422 3.020000e-64 255
32 TraesCS2D01G485900 chr5D 92.784 194 13 1 164 357 458842731 458842923 1.790000e-71 279
33 TraesCS2D01G485900 chr5D 90.338 207 14 3 2148 2348 373956910 373957116 1.390000e-67 267
34 TraesCS2D01G485900 chr5D 94.375 160 9 0 1 160 497816926 497816767 1.820000e-61 246
35 TraesCS2D01G485900 chr5D 93.750 160 10 0 1 160 497815749 497815908 8.450000e-60 241
36 TraesCS2D01G485900 chr6A 88.839 224 18 5 2149 2365 60164254 60164031 3.870000e-68 268
37 TraesCS2D01G485900 chr3A 88.000 225 20 4 2148 2365 102836156 102835932 2.330000e-65 259
38 TraesCS2D01G485900 chr3B 87.946 224 20 4 2149 2365 431546549 431546326 8.390000e-65 257
39 TraesCS2D01G485900 chr1D 95.000 160 8 0 1 160 439166129 439166288 3.900000e-63 252
40 TraesCS2D01G485900 chr1D 93.750 160 10 0 1 160 439167220 439167061 8.450000e-60 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G485900 chr2D 586368878 586371242 2364 False 4368.000000 4368 100.000000 1 2365 1 chr2D.!!$F3 2364
1 TraesCS2D01G485900 chr2D 586359982 586360890 908 False 608.000000 608 79.957000 757 1621 1 chr2D.!!$F2 864
2 TraesCS2D01G485900 chr2A 721449814 721454893 5079 False 859.666667 2063 87.956333 426 2148 3 chr2A.!!$F1 1722
3 TraesCS2D01G485900 chr2B 707986527 707988295 1768 False 705.000000 869 89.371333 364 2148 3 chr2B.!!$F3 1784
4 TraesCS2D01G485900 chr2B 708064183 708065708 1525 False 454.333333 590 87.552000 697 2148 3 chr2B.!!$F4 1451
5 TraesCS2D01G485900 chr2B 707977749 707978683 934 False 283.000000 383 79.269000 783 1621 2 chr2B.!!$F2 838
6 TraesCS2D01G485900 chr7D 599723032 599724182 1150 False 265.500000 285 94.029500 1 353 2 chr7D.!!$F3 352

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 1183 0.105964 TGGCCCTTAACCGATCGATG 59.894 55.0 18.66 2.8 0.0 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2243 4904 0.034186 CCCTAGATGCAGGCAACCAA 60.034 55.0 0.0 0.0 34.02 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.890088 TGATAACTACTGAAACCAGCGTT 58.110 39.130 0.00 0.00 35.09 4.84
55 56 1.605971 AAAACCCAAAACGCCCGTGT 61.606 50.000 0.00 0.00 0.00 4.49
93 94 2.862674 TTATGACAAGTCGGGCCCGC 62.863 60.000 39.89 31.68 39.59 6.13
101 102 3.404438 TCGGGCCCGCACCTAAAT 61.404 61.111 39.89 0.00 39.59 1.40
135 136 2.064014 GACCGTTCCTTTGACCGTTAG 58.936 52.381 0.00 0.00 0.00 2.34
146 147 1.616374 TGACCGTTAGCTGACATGTGA 59.384 47.619 1.15 0.00 0.00 3.58
152 153 1.960040 TAGCTGACATGTGAGGCCCG 61.960 60.000 14.43 0.00 0.00 6.13
160 161 2.124570 GTGAGGCCCGCATGTCAT 60.125 61.111 0.00 0.00 0.00 3.06
161 162 2.182842 GTGAGGCCCGCATGTCATC 61.183 63.158 0.00 0.00 0.00 2.92
175 974 4.436050 GCATGTCATCTAACGGTCAAACAG 60.436 45.833 0.00 0.00 0.00 3.16
230 1029 8.238631 GTCATAAACCGGTTTAATTTCTTAGCA 58.761 33.333 36.33 16.89 38.38 3.49
233 1032 6.394025 AACCGGTTTAATTTCTTAGCAACA 57.606 33.333 15.86 0.00 0.00 3.33
236 1035 5.048294 CCGGTTTAATTTCTTAGCAACAGGT 60.048 40.000 0.00 0.00 0.00 4.00
267 1066 3.793775 TTGAAACAGCCGACGCCGA 62.794 57.895 0.00 0.00 38.22 5.54
270 1069 2.292802 GAAACAGCCGACGCCGATTC 62.293 60.000 0.00 0.00 38.22 2.52
271 1070 2.781595 AAACAGCCGACGCCGATTCT 62.782 55.000 0.00 0.00 38.22 2.40
273 1072 3.449227 AGCCGACGCCGATTCTGA 61.449 61.111 0.00 0.00 38.22 3.27
353 1152 8.644318 AGTGGTAGTTTTATGCTATTTACTCG 57.356 34.615 0.00 0.00 0.00 4.18
354 1153 8.472413 AGTGGTAGTTTTATGCTATTTACTCGA 58.528 33.333 0.00 0.00 0.00 4.04
355 1154 8.538039 GTGGTAGTTTTATGCTATTTACTCGAC 58.462 37.037 0.00 0.00 0.00 4.20
356 1155 8.252417 TGGTAGTTTTATGCTATTTACTCGACA 58.748 33.333 0.00 0.00 0.00 4.35
357 1156 9.090692 GGTAGTTTTATGCTATTTACTCGACAA 57.909 33.333 0.00 0.00 0.00 3.18
360 1159 9.216117 AGTTTTATGCTATTTACTCGACAAACT 57.784 29.630 0.00 0.00 0.00 2.66
361 1160 9.474249 GTTTTATGCTATTTACTCGACAAACTC 57.526 33.333 0.00 0.00 0.00 3.01
362 1161 8.766000 TTTATGCTATTTACTCGACAAACTCA 57.234 30.769 0.00 0.00 0.00 3.41
368 1167 1.583054 ACTCGACAAACTCAGTTGGC 58.417 50.000 0.00 0.00 32.77 4.52
371 1170 0.535102 CGACAAACTCAGTTGGCCCT 60.535 55.000 0.00 0.00 32.42 5.19
382 1181 0.108041 GTTGGCCCTTAACCGATCGA 60.108 55.000 18.66 0.00 0.00 3.59
384 1183 0.105964 TGGCCCTTAACCGATCGATG 59.894 55.000 18.66 2.80 0.00 3.84
386 1185 1.217882 GCCCTTAACCGATCGATGTG 58.782 55.000 18.66 1.54 0.00 3.21
402 1201 1.691196 TGTGCTTTCTTGTCCTTGGG 58.309 50.000 0.00 0.00 0.00 4.12
486 1294 6.078456 ACTGGATTTTGATTCCACCTATCA 57.922 37.500 0.00 0.00 38.35 2.15
520 1334 5.860182 TGCTACAAGTTACACGTACATCTTC 59.140 40.000 0.00 0.00 0.00 2.87
534 1348 7.545965 CACGTACATCTTCCAAAATTCTCTAGT 59.454 37.037 0.00 0.00 0.00 2.57
631 1446 8.402798 TCTTTTTAGAACTGCATGAACCATTA 57.597 30.769 0.00 0.00 0.00 1.90
632 1447 8.855110 TCTTTTTAGAACTGCATGAACCATTAA 58.145 29.630 0.00 0.00 0.00 1.40
633 1448 9.474920 CTTTTTAGAACTGCATGAACCATTAAA 57.525 29.630 0.00 0.00 0.00 1.52
775 1594 1.878953 AAGCGTGAACACTTACTGGG 58.121 50.000 3.51 0.00 0.00 4.45
1170 2127 7.178451 TGGTCATCTTCTCAAGTTGATACTACA 59.822 37.037 5.91 0.00 38.91 2.74
1397 2383 0.038744 CTCATGGGGAGCACCAAGTT 59.961 55.000 1.58 0.00 45.13 2.66
1401 2387 0.251165 TGGGGAGCACCAAGTTAAGC 60.251 55.000 1.58 0.00 42.91 3.09
1462 2469 3.462021 CCTAGCTTCCTCTGTATTGCAC 58.538 50.000 0.00 0.00 0.00 4.57
1530 2551 5.163794 CCTTGTTTATATTTCGTTCGCCTGT 60.164 40.000 0.00 0.00 0.00 4.00
1627 2654 2.231478 TGAACTCTAGTAGCAGTGTGGC 59.769 50.000 0.00 0.00 0.00 5.01
1630 2657 1.821753 CTCTAGTAGCAGTGTGGCACT 59.178 52.381 19.83 0.00 46.51 4.40
1631 2658 2.232452 CTCTAGTAGCAGTGTGGCACTT 59.768 50.000 19.83 4.19 42.59 3.16
1676 2703 5.983540 AGATAGATGGTCGAAGAAGCTTTT 58.016 37.500 0.00 0.00 39.69 2.27
1677 2704 5.814705 AGATAGATGGTCGAAGAAGCTTTTG 59.185 40.000 0.00 0.00 39.69 2.44
1678 2705 3.744660 AGATGGTCGAAGAAGCTTTTGT 58.255 40.909 0.00 0.00 39.69 2.83
1683 2822 1.873591 TCGAAGAAGCTTTTGTCAGCC 59.126 47.619 0.00 0.00 41.12 4.85
1693 2840 3.550842 GCTTTTGTCAGCCCAACAACTAG 60.551 47.826 0.00 0.00 36.41 2.57
1759 2906 4.873746 ATCGTATGCCAATACTAGTGCT 57.126 40.909 5.39 0.00 37.16 4.40
1760 2907 3.977427 TCGTATGCCAATACTAGTGCTG 58.023 45.455 5.39 2.29 37.16 4.41
1761 2908 3.383505 TCGTATGCCAATACTAGTGCTGT 59.616 43.478 5.39 0.00 37.16 4.40
1762 2909 3.490896 CGTATGCCAATACTAGTGCTGTG 59.509 47.826 5.39 0.00 37.16 3.66
1763 2910 1.737838 TGCCAATACTAGTGCTGTGC 58.262 50.000 5.39 8.61 0.00 4.57
1776 2923 3.185082 CTGTGCACAGTGCCAACCG 62.185 63.158 34.04 10.42 44.23 4.44
1777 2924 3.209097 GTGCACAGTGCCAACCGT 61.209 61.111 23.06 0.00 44.23 4.83
1778 2925 2.899838 TGCACAGTGCCAACCGTC 60.900 61.111 23.06 0.00 44.23 4.79
1779 2926 3.660111 GCACAGTGCCAACCGTCC 61.660 66.667 15.27 0.00 37.42 4.79
1950 3107 6.867662 AACAGAGTAAACAAATCAGACAGG 57.132 37.500 0.00 0.00 0.00 4.00
2038 3203 2.971330 TGGGGTCAAATTTGCACAGAAT 59.029 40.909 13.54 0.00 0.00 2.40
2050 3215 9.643693 AAATTTGCACAGAATATCTACTTTTGG 57.356 29.630 0.00 0.00 0.00 3.28
2112 3277 7.476540 TCTGTTGTAGCTAGGTCTAATTCAA 57.523 36.000 0.00 0.00 0.00 2.69
2123 3288 9.226345 GCTAGGTCTAATTCAAAATTTGATTCG 57.774 33.333 9.41 3.47 39.84 3.34
2148 3313 3.432749 CCACATGGTCTCTAACAGATGGG 60.433 52.174 0.00 0.00 32.08 4.00
2149 3314 2.774234 ACATGGTCTCTAACAGATGGGG 59.226 50.000 0.00 0.00 32.08 4.96
2151 3316 0.105039 GGTCTCTAACAGATGGGGCG 59.895 60.000 0.00 0.00 32.08 6.13
2154 3319 0.537188 CTCTAACAGATGGGGCGTGT 59.463 55.000 0.00 0.00 0.00 4.49
2158 3323 1.178534 AACAGATGGGGCGTGTTTGG 61.179 55.000 0.00 0.00 30.07 3.28
2159 3324 1.603455 CAGATGGGGCGTGTTTGGT 60.603 57.895 0.00 0.00 0.00 3.67
2161 3326 1.178534 AGATGGGGCGTGTTTGGTTG 61.179 55.000 0.00 0.00 0.00 3.77
2164 3329 2.027460 GGGCGTGTTTGGTTGCAG 59.973 61.111 0.00 0.00 0.00 4.41
2165 3330 2.781158 GGGCGTGTTTGGTTGCAGT 61.781 57.895 0.00 0.00 0.00 4.40
2166 3331 1.448922 GGGCGTGTTTGGTTGCAGTA 61.449 55.000 0.00 0.00 0.00 2.74
2168 3333 0.661020 GCGTGTTTGGTTGCAGTAGT 59.339 50.000 0.00 0.00 0.00 2.73
2169 3334 1.596954 GCGTGTTTGGTTGCAGTAGTG 60.597 52.381 0.00 0.00 0.00 2.74
2172 3337 3.691498 GTGTTTGGTTGCAGTAGTGAAC 58.309 45.455 0.42 3.37 0.00 3.18
2174 3339 3.376859 TGTTTGGTTGCAGTAGTGAACAG 59.623 43.478 0.42 0.00 0.00 3.16
2175 3340 3.275617 TTGGTTGCAGTAGTGAACAGT 57.724 42.857 0.42 0.00 0.00 3.55
2177 3342 3.990092 TGGTTGCAGTAGTGAACAGTAG 58.010 45.455 0.42 0.00 0.00 2.57
2178 3343 2.737252 GGTTGCAGTAGTGAACAGTAGC 59.263 50.000 0.42 0.00 0.00 3.58
2179 3344 3.555168 GGTTGCAGTAGTGAACAGTAGCT 60.555 47.826 0.42 0.00 0.00 3.32
2180 3345 3.303881 TGCAGTAGTGAACAGTAGCTG 57.696 47.619 0.42 0.00 37.52 4.24
2181 3346 1.996191 GCAGTAGTGAACAGTAGCTGC 59.004 52.381 18.31 18.31 35.91 5.25
2182 3347 2.610479 GCAGTAGTGAACAGTAGCTGCA 60.610 50.000 22.91 0.00 39.02 4.41
2183 3348 3.854666 CAGTAGTGAACAGTAGCTGCAT 58.145 45.455 4.12 0.00 34.37 3.96
2184 3349 4.248859 CAGTAGTGAACAGTAGCTGCATT 58.751 43.478 4.12 0.00 34.37 3.56
2185 3350 4.092529 CAGTAGTGAACAGTAGCTGCATTG 59.907 45.833 4.12 0.00 34.37 2.82
2186 3351 3.131709 AGTGAACAGTAGCTGCATTGT 57.868 42.857 4.12 0.00 34.37 2.71
2188 3353 4.836825 AGTGAACAGTAGCTGCATTGTAT 58.163 39.130 4.12 0.00 34.37 2.29
2189 3354 5.977635 AGTGAACAGTAGCTGCATTGTATA 58.022 37.500 4.12 0.00 34.37 1.47
2190 3355 5.812642 AGTGAACAGTAGCTGCATTGTATAC 59.187 40.000 4.12 0.00 34.37 1.47
2192 3357 5.580691 TGAACAGTAGCTGCATTGTATACAC 59.419 40.000 4.68 0.00 34.37 2.90
2193 3358 5.084818 ACAGTAGCTGCATTGTATACACA 57.915 39.130 4.68 0.00 34.37 3.72
2194 3359 5.674525 ACAGTAGCTGCATTGTATACACAT 58.325 37.500 4.68 0.12 34.37 3.21
2195 3360 5.755375 ACAGTAGCTGCATTGTATACACATC 59.245 40.000 4.68 0.00 34.37 3.06
2196 3361 5.987953 CAGTAGCTGCATTGTATACACATCT 59.012 40.000 4.68 4.50 33.76 2.90
2199 3364 5.430886 AGCTGCATTGTATACACATCTCAA 58.569 37.500 4.68 0.00 33.76 3.02
2200 3365 5.295292 AGCTGCATTGTATACACATCTCAAC 59.705 40.000 4.68 0.00 33.76 3.18
2201 3366 5.504665 GCTGCATTGTATACACATCTCAACC 60.505 44.000 4.68 0.00 33.76 3.77
2202 3367 4.881273 TGCATTGTATACACATCTCAACCC 59.119 41.667 4.68 0.00 33.76 4.11
2203 3368 4.881273 GCATTGTATACACATCTCAACCCA 59.119 41.667 4.68 0.00 33.76 4.51
2204 3369 5.008019 GCATTGTATACACATCTCAACCCAG 59.992 44.000 4.68 0.00 33.76 4.45
2205 3370 4.137116 TGTATACACATCTCAACCCAGC 57.863 45.455 0.08 0.00 0.00 4.85
2206 3371 2.717639 ATACACATCTCAACCCAGCC 57.282 50.000 0.00 0.00 0.00 4.85
2207 3372 1.656587 TACACATCTCAACCCAGCCT 58.343 50.000 0.00 0.00 0.00 4.58
2208 3373 0.037303 ACACATCTCAACCCAGCCTG 59.963 55.000 0.00 0.00 0.00 4.85
2209 3374 0.679002 CACATCTCAACCCAGCCTGG 60.679 60.000 2.91 2.91 37.25 4.45
2210 3375 1.136329 ACATCTCAACCCAGCCTGGT 61.136 55.000 10.47 0.00 41.55 4.00
2215 3380 3.341270 AACCCAGCCTGGTTGACA 58.659 55.556 12.54 0.00 46.76 3.58
2216 3381 1.618030 AACCCAGCCTGGTTGACAA 59.382 52.632 12.54 0.00 46.76 3.18
2217 3382 0.755327 AACCCAGCCTGGTTGACAAC 60.755 55.000 12.54 9.97 46.76 3.32
2228 3393 2.774439 GTTGACAACCTCAAATGCGT 57.226 45.000 7.10 0.00 40.73 5.24
2229 3394 2.650608 GTTGACAACCTCAAATGCGTC 58.349 47.619 7.10 0.00 40.73 5.19
2232 4893 2.483877 TGACAACCTCAAATGCGTCATC 59.516 45.455 0.00 0.00 0.00 2.92
2234 4895 2.485426 ACAACCTCAAATGCGTCATCTG 59.515 45.455 0.00 0.00 0.00 2.90
2238 4899 3.935203 ACCTCAAATGCGTCATCTGTAAG 59.065 43.478 0.00 0.00 0.00 2.34
2243 4904 5.238432 TCAAATGCGTCATCTGTAAGTTGTT 59.762 36.000 0.00 0.00 35.22 2.83
2247 4908 3.250040 GCGTCATCTGTAAGTTGTTTGGT 59.750 43.478 0.00 0.00 35.22 3.67
2249 4910 5.204833 CGTCATCTGTAAGTTGTTTGGTTG 58.795 41.667 0.00 0.00 35.22 3.77
2251 4912 4.037446 TCATCTGTAAGTTGTTTGGTTGCC 59.963 41.667 0.00 0.00 35.22 4.52
2256 4917 1.122227 AGTTGTTTGGTTGCCTGCAT 58.878 45.000 0.00 0.00 0.00 3.96
2257 4918 1.069049 AGTTGTTTGGTTGCCTGCATC 59.931 47.619 0.00 0.00 0.00 3.91
2260 4921 2.161855 TGTTTGGTTGCCTGCATCTAG 58.838 47.619 0.00 0.00 0.00 2.43
2263 4924 1.207488 TGGTTGCCTGCATCTAGGGT 61.207 55.000 0.00 0.00 38.32 4.34
2264 4925 0.464554 GGTTGCCTGCATCTAGGGTC 60.465 60.000 0.00 0.00 38.32 4.46
2265 4926 0.464554 GTTGCCTGCATCTAGGGTCC 60.465 60.000 0.00 0.00 38.32 4.46
2267 4928 1.768077 GCCTGCATCTAGGGTCCCT 60.768 63.158 16.73 16.73 38.32 4.20
2270 4931 1.413082 CCTGCATCTAGGGTCCCTACA 60.413 57.143 14.22 9.44 34.61 2.74
2271 4932 2.614259 CTGCATCTAGGGTCCCTACAT 58.386 52.381 14.22 6.72 34.61 2.29
2274 4935 4.160329 TGCATCTAGGGTCCCTACATTAG 58.840 47.826 14.22 5.91 34.61 1.73
2275 4936 3.515901 GCATCTAGGGTCCCTACATTAGG 59.484 52.174 14.22 3.44 45.81 2.69
2276 4937 4.753186 CATCTAGGGTCCCTACATTAGGT 58.247 47.826 14.22 0.00 44.73 3.08
2277 4938 5.754148 GCATCTAGGGTCCCTACATTAGGTA 60.754 48.000 14.22 0.00 44.73 3.08
2278 4939 6.320518 CATCTAGGGTCCCTACATTAGGTAA 58.679 44.000 14.22 0.00 44.73 2.85
2279 4940 6.556644 TCTAGGGTCCCTACATTAGGTAAT 57.443 41.667 14.22 0.00 44.73 1.89
2280 4941 7.668131 TCTAGGGTCCCTACATTAGGTAATA 57.332 40.000 14.22 0.00 44.73 0.98
2283 4944 4.322273 GGGTCCCTACATTAGGTAATACGC 60.322 50.000 0.00 0.00 44.73 4.42
2284 4945 4.281688 GGTCCCTACATTAGGTAATACGCA 59.718 45.833 0.00 0.00 44.73 5.24
2286 4947 5.924825 GTCCCTACATTAGGTAATACGCAAG 59.075 44.000 0.00 0.00 44.73 4.01
2289 4950 6.278363 CCTACATTAGGTAATACGCAAGTGT 58.722 40.000 0.00 0.00 46.33 3.55
2290 4951 7.428020 CCTACATTAGGTAATACGCAAGTGTA 58.572 38.462 0.00 0.00 46.33 2.90
2301 4962 3.414549 CGCAAGTGTACTTTGTTTGGT 57.585 42.857 10.84 0.00 33.11 3.67
2302 4963 3.765026 CGCAAGTGTACTTTGTTTGGTT 58.235 40.909 10.84 0.00 33.11 3.67
2303 4964 3.545873 CGCAAGTGTACTTTGTTTGGTTG 59.454 43.478 10.84 0.00 33.11 3.77
2304 4965 3.305897 GCAAGTGTACTTTGTTTGGTTGC 59.694 43.478 10.84 0.00 33.11 4.17
2308 4969 2.159170 TGTACTTTGTTTGGTTGCCTGC 60.159 45.455 0.00 0.00 0.00 4.85
2309 4970 0.901124 ACTTTGTTTGGTTGCCTGCA 59.099 45.000 0.00 0.00 0.00 4.41
2310 4971 1.485895 ACTTTGTTTGGTTGCCTGCAT 59.514 42.857 0.00 0.00 0.00 3.96
2311 4972 2.093021 ACTTTGTTTGGTTGCCTGCATT 60.093 40.909 0.00 0.00 0.00 3.56
2313 4974 0.106335 TGTTTGGTTGCCTGCATTGG 59.894 50.000 0.00 0.00 0.00 3.16
2320 4981 2.046988 GCCTGCATTGGCCCAAAC 60.047 61.111 0.00 0.00 46.82 2.93
2321 4982 2.262292 CCTGCATTGGCCCAAACG 59.738 61.111 0.00 0.00 40.13 3.60
2335 6058 0.660005 CAAACGGCACATGAACACGG 60.660 55.000 0.00 0.00 0.00 4.94
2337 6060 1.781025 AACGGCACATGAACACGGTG 61.781 55.000 6.58 6.58 35.68 4.94
2339 6062 1.781025 CGGCACATGAACACGGTGTT 61.781 55.000 25.33 25.33 44.37 3.32
2341 6064 1.476074 GCACATGAACACGGTGTTTG 58.524 50.000 25.73 22.04 41.28 2.93
2342 6065 1.863624 GCACATGAACACGGTGTTTGG 60.864 52.381 25.73 19.37 41.28 3.28
2344 6067 2.096248 ACATGAACACGGTGTTTGGTT 58.904 42.857 25.73 5.00 41.28 3.67
2345 6068 2.159310 ACATGAACACGGTGTTTGGTTG 60.159 45.455 25.73 20.60 41.28 3.77
2346 6069 0.171455 TGAACACGGTGTTTGGTTGC 59.829 50.000 25.73 13.33 41.28 4.17
2347 6070 0.171455 GAACACGGTGTTTGGTTGCA 59.829 50.000 25.73 0.00 41.28 4.08
2348 6071 0.109039 AACACGGTGTTTGGTTGCAC 60.109 50.000 20.23 0.00 37.26 4.57
2349 6072 1.585002 CACGGTGTTTGGTTGCACG 60.585 57.895 0.00 0.00 36.54 5.34
2350 6073 2.653766 CGGTGTTTGGTTGCACGC 60.654 61.111 0.00 0.00 36.54 5.34
2351 6074 2.492090 GGTGTTTGGTTGCACGCA 59.508 55.556 0.00 0.00 36.54 5.24
2352 6075 1.067250 GGTGTTTGGTTGCACGCAT 59.933 52.632 0.00 0.00 36.54 4.73
2353 6076 1.214373 GGTGTTTGGTTGCACGCATG 61.214 55.000 0.00 0.00 36.54 4.06
2354 6077 0.248825 GTGTTTGGTTGCACGCATGA 60.249 50.000 0.00 0.00 0.00 3.07
2355 6078 0.030504 TGTTTGGTTGCACGCATGAG 59.969 50.000 0.00 0.00 0.00 2.90
2356 6079 0.664166 GTTTGGTTGCACGCATGAGG 60.664 55.000 0.00 0.00 0.00 3.86
2359 6082 0.035534 TGGTTGCACGCATGAGGTAT 60.036 50.000 0.00 0.00 0.00 2.73
2360 6083 0.378257 GGTTGCACGCATGAGGTATG 59.622 55.000 0.00 0.00 39.88 2.39
2362 6085 1.942657 GTTGCACGCATGAGGTATGAT 59.057 47.619 0.00 0.00 39.21 2.45
2363 6086 2.330440 TGCACGCATGAGGTATGATT 57.670 45.000 0.00 0.00 39.21 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 9.504708 TGTCATAAACCGGTTTAATTTCTTAGA 57.495 29.630 36.33 21.84 38.38 2.10
93 94 5.457473 GTCAAACAAACGGTTCATTTAGGTG 59.543 40.000 0.00 0.00 39.29 4.00
101 102 1.451067 ACGGTCAAACAAACGGTTCA 58.549 45.000 0.00 0.00 39.29 3.18
135 136 2.821366 CGGGCCTCACATGTCAGC 60.821 66.667 0.84 0.00 0.00 4.26
146 147 0.179045 GTTAGATGACATGCGGGCCT 60.179 55.000 0.84 0.00 0.00 5.19
152 153 3.435327 TGTTTGACCGTTAGATGACATGC 59.565 43.478 0.00 0.00 0.00 4.06
160 161 1.682854 ACCGTCTGTTTGACCGTTAGA 59.317 47.619 0.00 0.00 42.49 2.10
161 162 2.144482 ACCGTCTGTTTGACCGTTAG 57.856 50.000 0.00 0.00 42.49 2.34
175 974 1.620413 CCGCACCTAAACGAACCGTC 61.620 60.000 0.00 0.00 39.99 4.79
200 999 5.907866 AATTAAACCGGTTTATGACAGGG 57.092 39.130 34.14 0.00 46.59 4.45
202 1001 9.769093 CTAAGAAATTAAACCGGTTTATGACAG 57.231 33.333 34.14 21.46 35.27 3.51
316 1115 8.943002 CATAAAACTACCACTTTTCGTCCTATT 58.057 33.333 0.00 0.00 0.00 1.73
353 1152 1.692411 AAGGGCCAACTGAGTTTGTC 58.308 50.000 6.18 0.00 0.00 3.18
354 1153 2.956333 GTTAAGGGCCAACTGAGTTTGT 59.044 45.455 6.18 0.00 0.00 2.83
355 1154 2.296190 GGTTAAGGGCCAACTGAGTTTG 59.704 50.000 6.18 0.00 0.00 2.93
356 1155 2.594131 GGTTAAGGGCCAACTGAGTTT 58.406 47.619 6.18 0.00 0.00 2.66
357 1156 1.544759 CGGTTAAGGGCCAACTGAGTT 60.545 52.381 6.18 0.00 34.76 3.01
358 1157 0.036306 CGGTTAAGGGCCAACTGAGT 59.964 55.000 6.18 0.00 34.76 3.41
359 1158 0.323629 TCGGTTAAGGGCCAACTGAG 59.676 55.000 12.85 3.56 36.58 3.35
360 1159 0.988832 ATCGGTTAAGGGCCAACTGA 59.011 50.000 17.67 17.67 43.50 3.41
361 1160 1.379527 GATCGGTTAAGGGCCAACTG 58.620 55.000 6.18 7.84 34.23 3.16
362 1161 0.107848 CGATCGGTTAAGGGCCAACT 60.108 55.000 7.38 0.00 0.00 3.16
368 1167 1.202533 AGCACATCGATCGGTTAAGGG 60.203 52.381 16.41 0.00 0.00 3.95
371 1170 3.857052 AGAAAGCACATCGATCGGTTAA 58.143 40.909 16.41 0.00 0.00 2.01
382 1181 2.242043 CCCAAGGACAAGAAAGCACAT 58.758 47.619 0.00 0.00 0.00 3.21
384 1183 0.315251 GCCCAAGGACAAGAAAGCAC 59.685 55.000 0.00 0.00 0.00 4.40
386 1185 1.039856 TTGCCCAAGGACAAGAAAGC 58.960 50.000 0.00 0.00 0.00 3.51
402 1201 3.989817 CCTTGCTGGAGTAATTGTTTTGC 59.010 43.478 0.00 0.00 38.35 3.68
486 1294 6.018994 CGTGTAACTTGTAGCAAGTCTCTTTT 60.019 38.462 13.90 1.85 31.75 2.27
520 1334 9.965824 AAATGTGTTTACACTAGAGAATTTTGG 57.034 29.630 13.61 0.00 46.55 3.28
534 1348 7.921787 ACGTGTAATCTTGAAATGTGTTTACA 58.078 30.769 0.00 0.00 41.89 2.41
775 1594 1.269723 GAGTAGTTGTTTTGCCCCTGC 59.730 52.381 0.00 0.00 38.26 4.85
831 1658 3.512329 TCAAAATCTAGTAGCCCGACACA 59.488 43.478 0.00 0.00 0.00 3.72
989 1862 1.667154 GCCCGCCATTTTCCTTCTCC 61.667 60.000 0.00 0.00 0.00 3.71
1228 2208 2.308722 GGATTGACTCCCCCTGGCA 61.309 63.158 0.00 0.00 38.19 4.92
1273 2253 1.291184 CGCATCGAGCAACACCTTCA 61.291 55.000 7.47 0.00 46.13 3.02
1530 2551 6.723298 AATCCACAATTTGAACACCTGTTA 57.277 33.333 2.79 0.00 38.56 2.41
1651 2678 4.469657 AGCTTCTTCGACCATCTATCTCT 58.530 43.478 0.00 0.00 0.00 3.10
1658 2685 3.498397 TGACAAAAGCTTCTTCGACCATC 59.502 43.478 0.00 0.00 0.00 3.51
1676 2703 1.488812 ACACTAGTTGTTGGGCTGACA 59.511 47.619 0.00 0.00 33.09 3.58
1677 2704 2.143925 GACACTAGTTGTTGGGCTGAC 58.856 52.381 0.00 0.00 39.17 3.51
1678 2705 1.765904 TGACACTAGTTGTTGGGCTGA 59.234 47.619 0.00 0.00 39.17 4.26
1683 2822 1.202758 TGGGCTGACACTAGTTGTTGG 60.203 52.381 0.00 0.00 39.17 3.77
1762 2909 3.660111 GGACGGTTGGCACTGTGC 61.660 66.667 24.02 24.02 43.10 4.57
1763 2910 3.345808 CGGACGGTTGGCACTGTG 61.346 66.667 2.76 2.76 43.10 3.66
1776 2923 2.102553 GCTACCTGCTCGACGGAC 59.897 66.667 0.00 0.00 38.95 4.79
1777 2924 3.506096 CGCTACCTGCTCGACGGA 61.506 66.667 0.00 0.00 40.11 4.69
1778 2925 3.812019 ACGCTACCTGCTCGACGG 61.812 66.667 0.00 0.00 40.11 4.79
1779 2926 2.577112 CACGCTACCTGCTCGACG 60.577 66.667 0.00 0.00 40.11 5.12
1820 2967 2.594303 CGGTTGTCAGGCAGGCAA 60.594 61.111 0.00 0.00 40.09 4.52
1864 3018 2.094675 CGCTTGACCTTTCCATTCCAT 58.905 47.619 0.00 0.00 0.00 3.41
1928 3085 5.071788 TCCCTGTCTGATTTGTTTACTCTGT 59.928 40.000 0.00 0.00 0.00 3.41
2038 3203 6.995686 TCTGCAACAAACTCCAAAAGTAGATA 59.004 34.615 0.00 0.00 37.17 1.98
2049 3214 3.186909 GGTGTTTTCTGCAACAAACTCC 58.813 45.455 18.59 18.59 38.40 3.85
2050 3215 3.843999 TGGTGTTTTCTGCAACAAACTC 58.156 40.909 17.15 14.23 38.40 3.01
2109 3274 5.468592 CATGTGGACCGAATCAAATTTTGA 58.531 37.500 13.88 13.88 45.01 2.69
2112 3277 3.831911 ACCATGTGGACCGAATCAAATTT 59.168 39.130 5.96 0.00 38.94 1.82
2123 3288 2.832129 TCTGTTAGAGACCATGTGGACC 59.168 50.000 5.96 0.00 38.94 4.46
2148 3313 0.040425 CTACTGCAACCAAACACGCC 60.040 55.000 0.00 0.00 0.00 5.68
2149 3314 0.661020 ACTACTGCAACCAAACACGC 59.339 50.000 0.00 0.00 0.00 5.34
2151 3316 3.127895 TGTTCACTACTGCAACCAAACAC 59.872 43.478 0.00 0.00 0.00 3.32
2154 3319 3.616219 ACTGTTCACTACTGCAACCAAA 58.384 40.909 0.00 0.00 0.00 3.28
2158 3323 3.430218 CAGCTACTGTTCACTACTGCAAC 59.570 47.826 0.00 0.00 0.00 4.17
2159 3324 3.653344 CAGCTACTGTTCACTACTGCAA 58.347 45.455 0.00 0.00 0.00 4.08
2161 3326 1.996191 GCAGCTACTGTTCACTACTGC 59.004 52.381 0.00 0.00 41.80 4.40
2164 3329 3.997021 ACAATGCAGCTACTGTTCACTAC 59.003 43.478 0.00 0.00 33.43 2.73
2165 3330 4.271696 ACAATGCAGCTACTGTTCACTA 57.728 40.909 0.00 0.00 33.43 2.74
2166 3331 3.131709 ACAATGCAGCTACTGTTCACT 57.868 42.857 0.00 0.00 33.43 3.41
2168 3333 5.580691 GTGTATACAATGCAGCTACTGTTCA 59.419 40.000 7.25 0.00 33.43 3.18
2169 3334 5.580691 TGTGTATACAATGCAGCTACTGTTC 59.419 40.000 7.25 0.00 32.88 3.18
2172 3337 5.987953 AGATGTGTATACAATGCAGCTACTG 59.012 40.000 7.25 0.00 40.84 2.74
2174 3339 5.985530 TGAGATGTGTATACAATGCAGCTAC 59.014 40.000 7.25 5.29 40.84 3.58
2175 3340 6.160576 TGAGATGTGTATACAATGCAGCTA 57.839 37.500 7.25 0.00 40.84 3.32
2177 3342 5.504665 GGTTGAGATGTGTATACAATGCAGC 60.505 44.000 7.25 4.64 40.84 5.25
2178 3343 5.008019 GGGTTGAGATGTGTATACAATGCAG 59.992 44.000 7.25 0.00 40.84 4.41
2179 3344 4.881273 GGGTTGAGATGTGTATACAATGCA 59.119 41.667 7.25 1.91 40.84 3.96
2180 3345 4.881273 TGGGTTGAGATGTGTATACAATGC 59.119 41.667 7.25 0.00 40.84 3.56
2181 3346 5.008019 GCTGGGTTGAGATGTGTATACAATG 59.992 44.000 7.25 0.00 40.84 2.82
2182 3347 5.126067 GCTGGGTTGAGATGTGTATACAAT 58.874 41.667 7.25 3.84 40.84 2.71
2183 3348 4.513442 GCTGGGTTGAGATGTGTATACAA 58.487 43.478 7.25 0.00 40.84 2.41
2184 3349 3.118408 GGCTGGGTTGAGATGTGTATACA 60.118 47.826 0.08 0.08 41.89 2.29
2185 3350 3.134804 AGGCTGGGTTGAGATGTGTATAC 59.865 47.826 0.00 0.00 0.00 1.47
2186 3351 3.134623 CAGGCTGGGTTGAGATGTGTATA 59.865 47.826 6.61 0.00 0.00 1.47
2188 3353 1.278985 CAGGCTGGGTTGAGATGTGTA 59.721 52.381 6.61 0.00 0.00 2.90
2189 3354 0.037303 CAGGCTGGGTTGAGATGTGT 59.963 55.000 6.61 0.00 0.00 3.72
2190 3355 0.679002 CCAGGCTGGGTTGAGATGTG 60.679 60.000 26.34 0.00 32.67 3.21
2192 3357 1.687612 ACCAGGCTGGGTTGAGATG 59.312 57.895 35.34 9.19 43.37 2.90
2193 3358 4.257890 ACCAGGCTGGGTTGAGAT 57.742 55.556 35.34 11.69 43.37 2.75
2199 3364 1.152756 GTTGTCAACCAGGCTGGGT 60.153 57.895 35.34 29.30 43.37 4.51
2200 3365 3.763671 GTTGTCAACCAGGCTGGG 58.236 61.111 35.34 19.93 43.37 4.45
2209 3374 2.032799 TGACGCATTTGAGGTTGTCAAC 59.967 45.455 7.20 7.20 45.23 3.18
2210 3375 2.293170 TGACGCATTTGAGGTTGTCAA 58.707 42.857 0.00 0.00 43.82 3.18
2211 3376 1.960417 TGACGCATTTGAGGTTGTCA 58.040 45.000 0.00 0.00 34.27 3.58
2212 3377 2.744202 AGATGACGCATTTGAGGTTGTC 59.256 45.455 0.00 0.00 0.00 3.18
2213 3378 2.485426 CAGATGACGCATTTGAGGTTGT 59.515 45.455 4.96 0.00 28.98 3.32
2214 3379 2.485426 ACAGATGACGCATTTGAGGTTG 59.515 45.455 14.22 0.00 31.61 3.77
2215 3380 2.783135 ACAGATGACGCATTTGAGGTT 58.217 42.857 14.22 0.00 31.61 3.50
2216 3381 2.479566 ACAGATGACGCATTTGAGGT 57.520 45.000 14.22 0.01 31.61 3.85
2217 3382 3.935203 ACTTACAGATGACGCATTTGAGG 59.065 43.478 14.22 8.01 31.61 3.86
2218 3383 5.106948 ACAACTTACAGATGACGCATTTGAG 60.107 40.000 14.22 7.16 31.61 3.02
2220 3385 5.034554 ACAACTTACAGATGACGCATTTG 57.965 39.130 8.21 8.21 33.08 2.32
2221 3386 5.689383 AACAACTTACAGATGACGCATTT 57.311 34.783 0.00 0.00 0.00 2.32
2222 3387 5.451908 CAAACAACTTACAGATGACGCATT 58.548 37.500 0.00 0.00 0.00 3.56
2223 3388 4.083324 CCAAACAACTTACAGATGACGCAT 60.083 41.667 0.00 0.00 0.00 4.73
2224 3389 3.249799 CCAAACAACTTACAGATGACGCA 59.750 43.478 0.00 0.00 0.00 5.24
2225 3390 3.250040 ACCAAACAACTTACAGATGACGC 59.750 43.478 0.00 0.00 0.00 5.19
2227 3392 4.976116 GCAACCAAACAACTTACAGATGAC 59.024 41.667 0.00 0.00 0.00 3.06
2228 3393 4.037446 GGCAACCAAACAACTTACAGATGA 59.963 41.667 0.00 0.00 0.00 2.92
2229 3394 4.037923 AGGCAACCAAACAACTTACAGATG 59.962 41.667 0.00 0.00 37.17 2.90
2232 4893 3.705604 CAGGCAACCAAACAACTTACAG 58.294 45.455 0.00 0.00 37.17 2.74
2234 4895 2.159170 TGCAGGCAACCAAACAACTTAC 60.159 45.455 0.00 0.00 37.17 2.34
2238 4899 1.069049 AGATGCAGGCAACCAAACAAC 59.931 47.619 0.00 0.00 37.17 3.32
2243 4904 0.034186 CCCTAGATGCAGGCAACCAA 60.034 55.000 0.00 0.00 34.02 3.67
2247 4908 1.635817 GGGACCCTAGATGCAGGCAA 61.636 60.000 2.09 0.00 34.02 4.52
2249 4910 0.471971 TAGGGACCCTAGATGCAGGC 60.472 60.000 16.95 0.00 34.61 4.85
2251 4912 2.088104 TGTAGGGACCCTAGATGCAG 57.912 55.000 21.37 0.00 36.71 4.41
2267 4928 7.999679 AGTACACTTGCGTATTACCTAATGTA 58.000 34.615 0.00 0.00 0.00 2.29
2270 4931 7.820872 ACAAAGTACACTTGCGTATTACCTAAT 59.179 33.333 7.44 0.00 36.12 1.73
2271 4932 7.153985 ACAAAGTACACTTGCGTATTACCTAA 58.846 34.615 7.44 0.00 36.12 2.69
2274 4935 5.851047 ACAAAGTACACTTGCGTATTACC 57.149 39.130 7.44 0.00 36.12 2.85
2275 4936 6.575942 CCAAACAAAGTACACTTGCGTATTAC 59.424 38.462 7.44 0.00 36.12 1.89
2276 4937 6.260493 ACCAAACAAAGTACACTTGCGTATTA 59.740 34.615 7.44 0.00 36.12 0.98
2277 4938 5.066764 ACCAAACAAAGTACACTTGCGTATT 59.933 36.000 7.44 0.00 36.12 1.89
2278 4939 4.577283 ACCAAACAAAGTACACTTGCGTAT 59.423 37.500 7.44 0.00 36.12 3.06
2279 4940 3.940221 ACCAAACAAAGTACACTTGCGTA 59.060 39.130 7.44 0.00 36.12 4.42
2280 4941 2.750712 ACCAAACAAAGTACACTTGCGT 59.249 40.909 7.44 0.00 36.12 5.24
2283 4944 3.862845 GGCAACCAAACAAAGTACACTTG 59.137 43.478 0.00 0.66 36.12 3.16
2284 4945 3.767131 AGGCAACCAAACAAAGTACACTT 59.233 39.130 0.00 0.00 35.41 3.16
2286 4947 3.443976 CAGGCAACCAAACAAAGTACAC 58.556 45.455 0.00 0.00 37.17 2.90
2287 4948 2.159170 GCAGGCAACCAAACAAAGTACA 60.159 45.455 0.00 0.00 37.17 2.90
2289 4950 2.103373 TGCAGGCAACCAAACAAAGTA 58.897 42.857 0.00 0.00 37.17 2.24
2290 4951 0.901124 TGCAGGCAACCAAACAAAGT 59.099 45.000 0.00 0.00 37.17 2.66
2292 4953 2.286872 CAATGCAGGCAACCAAACAAA 58.713 42.857 0.00 0.00 37.17 2.83
2293 4954 1.474677 CCAATGCAGGCAACCAAACAA 60.475 47.619 0.00 0.00 37.17 2.83
2294 4955 0.106335 CCAATGCAGGCAACCAAACA 59.894 50.000 0.00 0.00 37.17 2.83
2304 4965 2.262292 CGTTTGGGCCAATGCAGG 59.738 61.111 21.65 7.29 40.13 4.85
2314 4975 0.318614 GTGTTCATGTGCCGTTTGGG 60.319 55.000 0.00 0.00 39.58 4.12
2315 4976 0.660005 CGTGTTCATGTGCCGTTTGG 60.660 55.000 0.00 0.00 38.77 3.28
2316 4977 0.660005 CCGTGTTCATGTGCCGTTTG 60.660 55.000 0.00 0.00 0.00 2.93
2317 4978 1.098712 ACCGTGTTCATGTGCCGTTT 61.099 50.000 0.00 0.00 0.00 3.60
2319 4980 2.110213 ACCGTGTTCATGTGCCGT 59.890 55.556 0.00 0.00 0.00 5.68
2320 4981 1.781025 AACACCGTGTTCATGTGCCG 61.781 55.000 11.24 0.00 35.27 5.69
2321 4982 0.383949 AAACACCGTGTTCATGTGCC 59.616 50.000 17.11 0.00 40.14 5.01
2323 4984 1.403679 ACCAAACACCGTGTTCATGTG 59.596 47.619 17.11 11.32 40.14 3.21
2335 6058 0.248825 TCATGCGTGCAACCAAACAC 60.249 50.000 0.00 0.00 0.00 3.32
2337 6060 0.664166 CCTCATGCGTGCAACCAAAC 60.664 55.000 0.00 0.00 0.00 2.93
2339 6062 0.250510 TACCTCATGCGTGCAACCAA 60.251 50.000 0.00 0.00 0.00 3.67
2341 6064 0.378257 CATACCTCATGCGTGCAACC 59.622 55.000 0.00 0.00 0.00 3.77
2342 6065 1.368641 TCATACCTCATGCGTGCAAC 58.631 50.000 0.00 0.00 34.35 4.17
2344 6067 2.330440 AATCATACCTCATGCGTGCA 57.670 45.000 0.00 0.00 34.35 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.